Query 022062
Match_columns 303
No_of_seqs 278 out of 1697
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gg4_A UDP-N-acetylmuramoylala 100.0 8.6E-53 2.9E-57 410.1 27.1 260 27-300 4-267 (452)
2 2am1_A SP protein, UDP-N-acety 100.0 9.1E-52 3.1E-56 402.9 24.3 252 27-298 3-259 (454)
3 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 4.8E-51 1.6E-55 405.5 21.4 266 21-300 28-328 (535)
4 1e8c_A UDP-N-acetylmuramoylala 100.0 3.9E-50 1.3E-54 395.8 22.3 259 28-300 4-292 (498)
5 3eag_A UDP-N-acetylmuramate:L- 100.0 3.5E-32 1.2E-36 254.3 17.6 162 132-301 108-278 (326)
6 2f00_A UDP-N-acetylmuramate--L 100.0 4.6E-30 1.6E-34 252.2 21.6 196 73-299 69-276 (491)
7 1p3d_A UDP-N-acetylmuramate--a 100.0 2.6E-30 8.8E-35 253.0 19.3 196 73-299 68-275 (475)
8 3hn7_A UDP-N-acetylmuramate-L- 100.0 2.1E-30 7.3E-35 256.6 17.2 252 13-301 18-326 (524)
9 4hv4_A UDP-N-acetylmuramate--L 100.0 8.2E-30 2.8E-34 250.7 19.7 191 85-301 80-281 (494)
10 2x5o_A UDP-N-acetylmuramoylala 100.0 5.1E-30 1.7E-34 248.6 9.3 201 47-275 30-234 (439)
11 3lk7_A UDP-N-acetylmuramoylala 100.0 1.1E-27 3.8E-32 232.9 16.7 166 86-276 72-248 (451)
12 2vos_A Folylpolyglutamate synt 100.0 1E-27 3.5E-32 235.4 16.0 178 113-299 45-281 (487)
13 1jbw_A Folylpolyglutamate synt 99.9 3.2E-28 1.1E-32 235.2 10.9 171 113-299 24-244 (428)
14 3nrs_A Dihydrofolate:folylpoly 99.9 7.6E-28 2.6E-32 233.3 12.6 154 115-274 35-229 (437)
15 1o5z_A Folylpolyglutamate synt 99.9 4.9E-27 1.7E-31 228.0 12.5 170 113-298 37-255 (442)
16 1j6u_A UDP-N-acetylmuramate-al 99.9 2.2E-25 7.5E-30 217.9 22.1 178 86-300 71-262 (469)
17 1w78_A FOLC bifunctional prote 99.9 1.8E-26 6.3E-31 222.4 11.3 148 120-273 37-225 (422)
18 3eh0_A UDP-3-O-[3-hydroxymyris 92.0 0.38 1.3E-05 44.2 7.6 87 26-127 3-92 (341)
19 2g0t_A Conserved hypothetical 91.5 0.76 2.6E-05 42.6 9.1 107 131-238 168-310 (350)
20 1rz3_A Hypothetical protein rb 91.4 0.35 1.2E-05 40.5 6.3 48 115-162 4-54 (201)
21 3bfv_A CAPA1, CAPB2, membrane 91.4 0.37 1.3E-05 42.7 6.6 48 115-162 63-115 (271)
22 4dzz_A Plasmid partitioning pr 90.6 0.19 6.6E-06 41.6 3.8 31 132-162 1-34 (206)
23 4e79_A UDP-3-O-acylglucosamine 90.6 0.45 1.5E-05 44.1 6.6 85 27-126 8-97 (357)
24 3of5_A Dethiobiotin synthetase 90.4 0.24 8.2E-06 42.9 4.3 33 130-162 2-37 (228)
25 3cio_A ETK, tyrosine-protein k 90.3 0.46 1.6E-05 42.7 6.3 48 115-162 85-137 (299)
26 1xjc_A MOBB protein homolog; s 89.8 0.28 9.6E-06 40.7 4.1 32 131-162 3-36 (169)
27 3pmo_A UDP-3-O-[3-hydroxymyris 89.7 0.73 2.5E-05 42.9 7.3 85 27-126 26-113 (372)
28 3la6_A Tyrosine-protein kinase 89.4 0.56 1.9E-05 42.0 6.1 48 115-162 73-125 (286)
29 3fwy_A Light-independent proto 89.3 0.29 9.8E-06 44.6 4.1 32 131-162 47-80 (314)
30 1byi_A Dethiobiotin synthase; 88.5 0.31 1.1E-05 41.1 3.6 30 133-162 2-34 (224)
31 3ea0_A ATPase, para family; al 87.5 0.38 1.3E-05 41.0 3.5 32 131-162 3-38 (245)
32 1pjq_A CYSG, siroheme synthase 86.9 1.3 4.5E-05 42.3 7.3 22 134-156 123-145 (457)
33 1wcv_1 SOJ, segregation protei 85.0 0.56 1.9E-05 40.7 3.4 32 131-162 5-39 (257)
34 3fgn_A Dethiobiotin synthetase 84.6 0.86 3E-05 40.1 4.4 33 130-162 24-59 (251)
35 1g3q_A MIND ATPase, cell divis 84.5 0.8 2.7E-05 38.8 4.0 30 133-162 3-35 (237)
36 3c8u_A Fructokinase; YP_612366 84.1 2.5 8.6E-05 35.2 7.0 44 115-158 5-50 (208)
37 2xj4_A MIPZ; replication, cell 83.0 0.93 3.2E-05 40.1 3.9 30 133-162 5-37 (286)
38 2oze_A ORF delta'; para, walke 82.6 1.6 5.5E-05 38.5 5.4 49 113-162 18-69 (298)
39 1a7j_A Phosphoribulokinase; tr 82.5 1 3.4E-05 40.3 4.0 29 131-159 4-34 (290)
40 3qxc_A Dethiobiotin synthetase 81.9 1.2 4.2E-05 38.9 4.2 31 132-162 21-54 (242)
41 1zu4_A FTSY; GTPase, signal re 81.6 1.2 4.3E-05 40.4 4.3 31 132-162 105-137 (320)
42 3k9g_A PF-32 protein; ssgcid, 81.1 0.99 3.4E-05 39.2 3.3 33 129-162 24-59 (267)
43 2z0h_A DTMP kinase, thymidylat 81.1 1.4 4.9E-05 35.9 4.2 31 134-164 2-34 (197)
44 1hyq_A MIND, cell division inh 80.7 1.2 4.1E-05 38.5 3.7 30 133-162 3-35 (263)
45 2ph1_A Nucleotide-binding prot 80.5 1.6 5.4E-05 37.9 4.5 31 132-162 18-51 (262)
46 3end_A Light-independent proto 80.5 1.4 4.8E-05 39.2 4.2 33 130-162 39-73 (307)
47 3ez2_A Plasmid partition prote 80.4 1.4 4.9E-05 40.8 4.4 37 126-162 102-147 (398)
48 3q9l_A Septum site-determining 80.2 1.4 4.9E-05 37.7 4.1 30 133-162 3-35 (260)
49 1uj2_A Uridine-cytidine kinase 80.0 0.82 2.8E-05 39.6 2.4 39 113-154 6-46 (252)
50 3ez9_A Para; DNA binding, wing 79.9 0.86 2.9E-05 42.5 2.7 36 127-162 106-150 (403)
51 3dm5_A SRP54, signal recogniti 79.7 4.9 0.00017 38.3 7.9 31 132-162 100-132 (443)
52 3zq6_A Putative arsenical pump 79.7 1.6 5.5E-05 39.5 4.4 34 129-162 10-46 (324)
53 3kl4_A SRP54, signal recogniti 79.7 3.9 0.00013 38.9 7.2 31 132-162 97-129 (433)
54 2px0_A Flagellar biosynthesis 79.6 0.93 3.2E-05 40.8 2.7 31 132-162 105-138 (296)
55 1vma_A Cell division protein F 79.0 1.8 6.3E-05 39.1 4.5 31 132-162 104-136 (306)
56 3cwq_A Para family chromosome 78.2 1.6 5.5E-05 36.7 3.6 61 134-195 2-78 (209)
57 1odf_A YGR205W, hypothetical 3 78.0 2.8 9.6E-05 37.4 5.4 29 129-157 28-58 (290)
58 2pbr_A DTMP kinase, thymidylat 77.7 2.3 7.8E-05 34.4 4.4 31 134-164 2-34 (195)
59 1nn5_A Similar to deoxythymidy 77.2 1.9 6.4E-05 35.7 3.7 31 132-162 9-41 (215)
60 2wwf_A Thymidilate kinase, put 76.7 2 6.7E-05 35.5 3.7 31 131-161 9-41 (212)
61 3ug7_A Arsenical pump-driving 76.6 2.3 7.9E-05 38.9 4.5 33 130-162 23-58 (349)
62 1nks_A Adenylate kinase; therm 76.5 2.2 7.6E-05 34.4 4.0 30 133-162 2-33 (194)
63 3tqc_A Pantothenate kinase; bi 76.1 3.3 0.00011 37.7 5.3 40 116-155 74-117 (321)
64 2pez_A Bifunctional 3'-phospho 76.0 2.6 8.7E-05 34.1 4.2 31 132-162 5-37 (179)
65 3asz_A Uridine kinase; cytidin 76.0 1.4 4.8E-05 36.6 2.6 25 131-155 5-31 (211)
66 2afh_E Nitrogenase iron protei 75.5 2.1 7.2E-05 37.6 3.8 31 132-162 2-34 (289)
67 2jeo_A Uridine-cytidine kinase 75.4 1.8 6E-05 37.3 3.2 23 132-154 25-49 (245)
68 1cp2_A CP2, nitrogenase iron p 75.1 2.2 7.5E-05 36.8 3.7 30 133-162 2-33 (269)
69 1uf9_A TT1252 protein; P-loop, 74.3 1.6 5.4E-05 35.8 2.4 26 128-153 4-31 (203)
70 1np6_A Molybdopterin-guanine d 73.7 3.1 0.0001 34.3 4.1 31 132-162 6-38 (174)
71 3fkq_A NTRC-like two-domain pr 72.6 2.6 9E-05 38.8 3.8 33 130-162 141-176 (373)
72 3pg5_A Uncharacterized protein 72.6 1.5 5E-05 40.4 2.0 31 132-162 1-34 (361)
73 2if2_A Dephospho-COA kinase; a 72.5 1.4 4.9E-05 36.3 1.8 21 133-154 2-24 (204)
74 1zuh_A Shikimate kinase; alpha 71.8 2.2 7.5E-05 34.0 2.7 29 131-162 6-36 (168)
75 3kb2_A SPBC2 prophage-derived 70.9 2.4 8.1E-05 33.6 2.7 28 132-162 1-30 (173)
76 2f1r_A Molybdopterin-guanine d 70.3 2.7 9.2E-05 34.5 2.9 30 132-161 2-33 (171)
77 1sq5_A Pantothenate kinase; P- 69.4 2.6 8.8E-05 37.8 2.9 26 130-155 78-105 (308)
78 2yvu_A Probable adenylyl-sulfa 69.2 4.7 0.00016 32.6 4.2 32 131-162 12-45 (186)
79 2grj_A Dephospho-COA kinase; T 68.3 2.8 9.6E-05 35.0 2.7 28 132-162 12-41 (192)
80 3ake_A Cytidylate kinase; CMP 68.1 2.9 9.8E-05 34.3 2.7 21 134-154 4-26 (208)
81 1rj9_A FTSY, signal recognitio 67.8 4.7 0.00016 36.3 4.3 32 131-162 101-134 (304)
82 3b9q_A Chloroplast SRP recepto 67.1 4.6 0.00016 36.3 4.0 31 132-162 100-132 (302)
83 1jjv_A Dephospho-COA kinase; P 66.9 2.8 9.4E-05 34.6 2.4 20 133-152 3-24 (206)
84 3tr0_A Guanylate kinase, GMP k 66.6 2.9 0.0001 34.2 2.5 23 132-154 7-31 (205)
85 1knq_A Gluconate kinase; ALFA/ 66.5 4.2 0.00014 32.5 3.4 26 129-154 5-32 (175)
86 1j8m_F SRP54, signal recogniti 65.3 17 0.00057 32.4 7.4 31 132-162 98-130 (297)
87 3uie_A Adenylyl-sulfate kinase 65.1 5.1 0.00018 33.0 3.7 30 131-160 24-55 (200)
88 3lnc_A Guanylate kinase, GMP k 64.5 3.5 0.00012 34.8 2.6 23 132-154 27-52 (231)
89 4ehx_A Tetraacyldisaccharide 4 64.5 12 0.00042 33.8 6.4 37 129-166 33-73 (315)
90 4i1u_A Dephospho-COA kinase; s 64.4 3.6 0.00012 35.2 2.6 29 130-162 7-37 (210)
91 3e70_C DPA, signal recognition 64.4 6.7 0.00023 35.7 4.6 32 131-162 128-161 (328)
92 1cke_A CK, MSSA, protein (cyti 64.3 3.9 0.00013 34.1 2.9 22 133-154 6-29 (227)
93 2obn_A Hypothetical protein; s 63.9 5.6 0.00019 36.7 4.0 108 132-239 152-290 (349)
94 3hjn_A DTMP kinase, thymidylat 63.7 4.1 0.00014 34.0 2.9 25 141-165 11-35 (197)
95 3aez_A Pantothenate kinase; tr 63.2 4.4 0.00015 36.5 3.2 28 130-157 88-117 (312)
96 4eun_A Thermoresistant glucoki 62.7 4.7 0.00016 33.2 3.0 24 131-154 28-53 (200)
97 1e6c_A Shikimate kinase; phosp 62.5 3.7 0.00013 32.6 2.3 22 133-154 3-26 (173)
98 3lv8_A DTMP kinase, thymidylat 62.0 7.3 0.00025 33.7 4.2 32 129-160 24-57 (236)
99 2og2_A Putative signal recogni 61.7 7.1 0.00024 36.1 4.3 31 132-162 157-189 (359)
100 2i3b_A HCR-ntpase, human cance 61.6 4.5 0.00016 33.6 2.7 25 134-158 3-29 (189)
101 1ye8_A Protein THEP1, hypothet 59.7 5.1 0.00018 32.8 2.7 21 134-154 2-24 (178)
102 3p32_A Probable GTPase RV1496/ 59.4 17 0.00057 33.0 6.4 33 129-161 76-110 (355)
103 2yhs_A FTSY, cell division pro 59.2 8 0.00027 37.5 4.3 31 132-162 293-325 (503)
104 1kag_A SKI, shikimate kinase I 59.0 3.9 0.00013 32.5 1.8 22 133-154 5-28 (173)
105 1ls1_A Signal recognition part 58.7 8.4 0.00029 34.3 4.2 31 132-162 98-130 (295)
106 4edh_A DTMP kinase, thymidylat 58.7 10 0.00034 32.1 4.5 33 132-164 6-40 (213)
107 2vli_A Antibiotic resistance p 58.5 5.2 0.00018 32.0 2.5 23 132-154 5-29 (183)
108 3a00_A Guanylate kinase, GMP k 58.3 3.5 0.00012 33.7 1.4 23 133-155 2-26 (186)
109 2xxa_A Signal recognition part 58.3 9.2 0.00031 36.2 4.5 31 132-162 100-133 (433)
110 1qf9_A UMP/CMP kinase, protein 58.2 6.2 0.00021 31.6 3.0 23 132-154 6-30 (194)
111 3syl_A Protein CBBX; photosynt 57.9 9.1 0.00031 33.4 4.2 26 133-159 71-96 (309)
112 3upu_A ATP-dependent DNA helic 57.9 9.4 0.00032 36.0 4.6 46 113-159 29-74 (459)
113 2woo_A ATPase GET3; tail-ancho 57.8 6.5 0.00022 35.5 3.3 26 137-162 26-51 (329)
114 2j41_A Guanylate kinase; GMP, 57.6 4.3 0.00015 33.1 1.9 23 132-154 6-30 (207)
115 4tmk_A Protein (thymidylate ki 57.2 10 0.00034 32.1 4.2 30 133-162 4-36 (213)
116 2plr_A DTMP kinase, probable t 57.0 8.7 0.0003 31.3 3.7 29 133-162 5-35 (213)
117 1y63_A LMAJ004144AAA protein; 56.4 7.1 0.00024 31.6 3.0 23 131-153 9-33 (184)
118 2pt5_A Shikimate kinase, SK; a 56.2 6.6 0.00023 30.9 2.7 26 134-162 2-29 (168)
119 3czq_A Putative polyphosphate 55.9 31 0.0011 31.1 7.4 146 113-260 68-266 (304)
120 2qt1_A Nicotinamide riboside k 55.5 3.5 0.00012 34.1 1.0 23 132-154 21-45 (207)
121 3kjh_A CO dehydrogenase/acetyl 55.2 3.3 0.00011 34.8 0.8 25 138-162 8-32 (254)
122 3io3_A DEHA2D07832P; chaperone 54.9 7.7 0.00026 35.5 3.3 30 133-162 19-52 (348)
123 2iyv_A Shikimate kinase, SK; t 53.9 5.7 0.0002 31.9 2.0 22 133-154 3-26 (184)
124 3a4m_A L-seryl-tRNA(SEC) kinas 53.6 12 0.0004 32.3 4.1 90 132-222 4-113 (260)
125 3t61_A Gluconokinase; PSI-biol 53.3 7.7 0.00026 31.8 2.8 23 132-154 18-42 (202)
126 1kht_A Adenylate kinase; phosp 53.2 11 0.00037 30.1 3.6 26 133-158 4-31 (192)
127 3iqw_A Tail-anchored protein t 52.2 8 0.00027 35.2 2.9 26 137-162 23-48 (334)
128 2p67_A LAO/AO transport system 51.7 11 0.00037 34.2 3.7 33 129-161 53-87 (341)
129 3tlx_A Adenylate kinase 2; str 50.9 16 0.00054 31.2 4.5 39 116-154 13-53 (243)
130 1ukz_A Uridylate kinase; trans 50.8 8.6 0.00029 31.4 2.6 25 130-154 13-39 (203)
131 1q3t_A Cytidylate kinase; nucl 50.7 10 0.00034 32.1 3.1 24 131-154 15-40 (236)
132 3ec2_A DNA replication protein 50.6 21 0.00072 28.4 5.0 48 114-161 19-70 (180)
133 3vaa_A Shikimate kinase, SK; s 50.3 10 0.00035 31.1 3.0 23 132-154 25-49 (199)
134 1zak_A Adenylate kinase; ATP:A 50.3 5.6 0.00019 33.2 1.4 20 134-154 10-29 (222)
135 2c95_A Adenylate kinase 1; tra 50.2 9.1 0.00031 30.8 2.7 23 132-154 9-33 (196)
136 2cdn_A Adenylate kinase; phosp 49.6 12 0.00039 30.6 3.3 28 132-162 20-49 (201)
137 3pzx_A Formate--tetrahydrofola 49.4 15 0.00051 35.7 4.3 34 129-162 54-93 (557)
138 3tau_A Guanylate kinase, GMP k 49.3 7.5 0.00026 32.3 2.1 24 131-154 7-32 (208)
139 3v9p_A DTMP kinase, thymidylat 49.1 17 0.00058 31.1 4.4 34 131-164 24-63 (227)
140 3ld9_A DTMP kinase, thymidylat 48.4 12 0.0004 32.1 3.2 33 131-163 20-55 (223)
141 2qm8_A GTPase/ATPase; G protei 48.0 15 0.00053 33.2 4.1 32 130-161 53-86 (337)
142 1m7g_A Adenylylsulfate kinase; 47.8 14 0.00047 30.5 3.5 31 132-162 25-58 (211)
143 1vht_A Dephospho-COA kinase; s 47.6 11 0.00037 31.3 2.8 27 132-162 4-32 (218)
144 2f6r_A COA synthase, bifunctio 47.5 10 0.00036 33.2 2.8 27 132-162 75-103 (281)
145 1lv7_A FTSH; alpha/beta domain 47.1 9.3 0.00032 32.6 2.4 42 113-154 19-69 (257)
146 3n70_A Transport activator; si 46.6 50 0.0017 25.3 6.5 28 134-162 29-56 (145)
147 2kjq_A DNAA-related protein; s 46.1 32 0.0011 26.9 5.4 32 131-162 35-68 (149)
148 1znw_A Guanylate kinase, GMP k 46.1 9.8 0.00034 31.4 2.3 24 132-155 20-45 (207)
149 4eaq_A DTMP kinase, thymidylat 46.0 18 0.00061 30.7 4.0 33 131-164 25-59 (229)
150 1dek_A Deoxynucleoside monopho 45.8 10 0.00035 32.9 2.4 23 132-154 1-25 (241)
151 2woj_A ATPase GET3; tail-ancho 45.7 15 0.00053 33.5 3.8 26 137-162 25-52 (354)
152 2ffh_A Protein (FFH); SRP54, s 45.6 17 0.00057 34.4 4.0 31 132-162 98-130 (425)
153 4e22_A Cytidylate kinase; P-lo 45.4 11 0.00038 32.4 2.6 23 132-154 27-51 (252)
154 2eyu_A Twitching motility prot 45.4 13 0.00045 32.4 3.1 26 132-157 25-52 (261)
155 2j37_W Signal recognition part 45.1 17 0.00059 35.1 4.2 32 131-162 100-133 (504)
156 2w58_A DNAI, primosome compone 44.5 48 0.0016 26.7 6.4 30 133-162 55-86 (202)
157 1x6v_B Bifunctional 3'-phospho 44.4 23 0.00078 35.2 5.0 35 130-164 50-86 (630)
158 2gks_A Bifunctional SAT/APS ki 44.4 24 0.00082 34.3 5.1 31 132-162 372-404 (546)
159 1xx6_A Thymidine kinase; NESG, 44.3 25 0.00085 29.1 4.5 33 130-162 6-40 (191)
160 2w0m_A SSO2452; RECA, SSPF, un 44.0 19 0.00063 29.5 3.7 31 132-162 23-55 (235)
161 4hlc_A DTMP kinase, thymidylat 43.7 12 0.00042 31.3 2.5 31 134-165 4-36 (205)
162 2v54_A DTMP kinase, thymidylat 43.6 9.3 0.00032 31.0 1.7 28 132-161 4-33 (204)
163 2jaq_A Deoxyguanosine kinase; 43.3 14 0.00047 29.8 2.8 21 134-154 2-24 (205)
164 3gdg_A Probable NADP-dependent 43.1 46 0.0016 28.1 6.3 86 130-218 18-110 (267)
165 3oig_A Enoyl-[acyl-carrier-pro 43.1 83 0.0028 26.5 8.0 87 130-219 5-97 (266)
166 1lvg_A Guanylate kinase, GMP k 43.0 11 0.00038 31.0 2.1 22 133-154 5-28 (198)
167 1g8f_A Sulfate adenylyltransfe 42.3 19 0.00066 34.8 4.0 26 131-156 394-421 (511)
168 2vo1_A CTP synthase 1; pyrimid 41.9 31 0.0011 30.7 4.9 31 131-161 22-56 (295)
169 1via_A Shikimate kinase; struc 41.8 12 0.00042 29.7 2.2 22 133-154 5-28 (175)
170 1aky_A Adenylate kinase; ATP:A 41.7 16 0.00054 30.3 3.0 23 132-154 4-28 (220)
171 1tev_A UMP-CMP kinase; ploop, 41.7 15 0.00053 29.2 2.8 22 133-154 4-27 (196)
172 3jvv_A Twitching mobility prot 40.9 18 0.00062 33.2 3.4 29 133-161 124-155 (356)
173 2qor_A Guanylate kinase; phosp 40.6 6.6 0.00023 32.4 0.4 23 132-154 12-36 (204)
174 1kyq_A Met8P, siroheme biosynt 40.5 21 0.00072 31.6 3.7 21 134-155 161-182 (274)
175 1kgd_A CASK, peripheral plasma 40.4 14 0.00048 29.7 2.4 23 132-154 5-29 (180)
176 2bwj_A Adenylate kinase 5; pho 40.2 15 0.00051 29.6 2.5 22 133-154 13-36 (199)
177 2www_A Methylmalonic aciduria 39.8 53 0.0018 29.7 6.4 30 132-161 74-105 (349)
178 1qhx_A CPT, protein (chloramph 39.3 13 0.00045 29.4 2.0 22 133-154 4-27 (178)
179 2bdt_A BH3686; alpha-beta prot 38.9 15 0.00053 29.5 2.4 20 133-152 3-24 (189)
180 1gtv_A TMK, thymidylate kinase 38.7 7.9 0.00027 31.8 0.5 27 134-161 5-31 (214)
181 2jnb_A NHP2-like protein 1; sp 38.7 1.1E+02 0.0036 24.3 7.3 71 74-155 54-137 (144)
182 3trf_A Shikimate kinase, SK; a 38.4 19 0.00064 28.7 2.8 28 132-162 5-34 (185)
183 3o38_A Short chain dehydrogena 38.4 87 0.003 26.3 7.3 86 130-218 20-110 (266)
184 3cm0_A Adenylate kinase; ATP-b 38.2 18 0.00063 28.7 2.7 22 133-154 5-28 (186)
185 3do6_A Formate--tetrahydrofola 37.9 30 0.001 33.3 4.5 34 130-163 41-80 (543)
186 3vkg_A Dynein heavy chain, cyt 37.4 14 0.00047 43.7 2.3 53 100-161 1622-1674(3245)
187 3lfu_A DNA helicase II; SF1 he 37.3 17 0.00057 35.5 2.7 52 102-155 24-76 (647)
188 3iij_A Coilin-interacting nucl 36.8 20 0.0007 28.4 2.8 23 132-154 11-35 (180)
189 3czp_A Putative polyphosphate 36.7 1.2E+02 0.0041 29.1 8.6 50 113-163 24-76 (500)
190 1ihu_A Arsenical pump-driving 36.4 22 0.00077 34.5 3.5 30 133-162 9-40 (589)
191 3lw7_A Adenylate kinase relate 36.3 23 0.00077 27.4 2.9 26 133-162 2-29 (179)
192 3rd5_A Mypaa.01249.C; ssgcid, 35.8 1.7E+02 0.006 24.9 9.0 82 129-218 13-95 (291)
193 2b8t_A Thymidine kinase; deoxy 35.0 37 0.0013 28.9 4.2 33 130-162 10-44 (223)
194 2v3c_C SRP54, signal recogniti 35.0 23 0.00077 33.4 3.1 30 133-162 100-131 (432)
195 3kta_A Chromosome segregation 34.9 16 0.00054 29.1 1.8 22 133-154 27-50 (182)
196 1zp6_A Hypothetical protein AT 34.9 19 0.00063 28.9 2.2 23 132-154 9-33 (191)
197 2rhm_A Putative kinase; P-loop 34.8 22 0.00075 28.3 2.7 23 132-154 5-29 (193)
198 1htw_A HI0065; nucleotide-bind 33.6 23 0.00078 28.3 2.5 24 131-154 32-57 (158)
199 2ewv_A Twitching motility prot 33.3 25 0.00084 32.3 3.0 26 132-157 136-163 (372)
200 1l8q_A Chromosomal replication 33.0 66 0.0023 28.1 5.8 46 117-162 22-69 (324)
201 2bbw_A Adenylate kinase 4, AK4 32.1 28 0.00095 29.4 3.0 23 132-154 27-51 (246)
202 2orw_A Thymidine kinase; TMTK, 31.8 35 0.0012 27.8 3.5 29 133-162 4-35 (184)
203 4a0g_A Adenosylmethionine-8-am 31.0 30 0.001 35.5 3.5 31 132-162 34-72 (831)
204 4fcw_A Chaperone protein CLPB; 31.0 60 0.0021 27.9 5.1 34 128-161 43-78 (311)
205 3hws_A ATP-dependent CLP prote 30.8 26 0.0009 31.5 2.8 20 134-154 56-75 (363)
206 1nij_A Hypothetical protein YJ 30.3 25 0.00086 31.3 2.5 24 131-154 3-28 (318)
207 2h92_A Cytidylate kinase; ross 30.3 20 0.00068 29.5 1.7 22 133-154 4-27 (219)
208 3b85_A Phosphate starvation-in 29.8 36 0.0012 28.4 3.2 25 132-157 22-48 (208)
209 3nwj_A ATSK2; P loop, shikimat 29.7 26 0.00091 30.3 2.4 23 132-154 48-72 (250)
210 3igf_A ALL4481 protein; two-do 29.5 17 0.00058 33.7 1.2 24 139-162 11-34 (374)
211 1cr0_A DNA primase/helicase; R 29.3 49 0.0017 28.6 4.2 31 132-162 35-68 (296)
212 1z6g_A Guanylate kinase; struc 29.3 21 0.00073 29.8 1.7 23 132-154 23-47 (218)
213 1p9r_A General secretion pathw 29.2 33 0.0011 32.1 3.2 30 132-161 167-198 (418)
214 3l77_A Short-chain alcohol deh 29.0 1.6E+02 0.0053 24.1 7.3 84 132-219 2-90 (235)
215 3ney_A 55 kDa erythrocyte memb 28.9 34 0.0011 28.6 2.9 27 128-154 15-43 (197)
216 3be4_A Adenylate kinase; malar 28.7 27 0.00091 28.9 2.2 27 133-162 6-34 (217)
217 3fb4_A Adenylate kinase; psych 28.5 31 0.0011 28.2 2.6 21 134-154 2-24 (216)
218 2qz4_A Paraplegin; AAA+, SPG7, 28.5 83 0.0028 26.2 5.5 42 113-154 13-63 (262)
219 1yrb_A ATP(GTP)binding protein 28.4 25 0.00086 29.6 2.1 29 132-161 14-44 (262)
220 3co5_A Putative two-component 28.2 30 0.001 26.6 2.4 23 131-154 29-51 (143)
221 3lf2_A Short chain oxidoreduct 28.2 1.7E+02 0.0056 24.7 7.4 86 130-219 6-97 (265)
222 2bjv_A PSP operon transcriptio 27.9 41 0.0014 28.5 3.4 27 135-161 32-60 (265)
223 3hdt_A Putative kinase; struct 27.6 34 0.0012 29.0 2.8 27 132-161 14-42 (223)
224 3bos_A Putative DNA replicatio 27.5 1.3E+02 0.0043 24.3 6.4 45 116-162 38-84 (242)
225 2j9r_A Thymidine kinase; TK1, 27.4 68 0.0023 27.2 4.6 34 129-162 25-60 (214)
226 1ak2_A Adenylate kinase isoenz 27.3 40 0.0014 28.2 3.1 23 132-154 16-40 (233)
227 4akg_A Glutathione S-transfera 26.6 18 0.0006 42.2 0.9 52 101-161 1586-1637(2695)
228 3r20_A Cytidylate kinase; stru 26.5 38 0.0013 29.0 2.8 22 133-154 10-33 (233)
229 1s96_A Guanylate kinase, GMP k 26.5 32 0.0011 29.0 2.3 25 131-155 15-41 (219)
230 3fdi_A Uncharacterized protein 26.2 38 0.0013 28.0 2.7 27 132-161 6-34 (201)
231 2ze6_A Isopentenyl transferase 26.1 38 0.0013 29.0 2.8 22 133-154 2-25 (253)
232 1m8p_A Sulfate adenylyltransfe 26.1 55 0.0019 32.0 4.2 31 132-162 396-429 (573)
233 2c5m_A CTP synthase; cytidine 26.0 53 0.0018 29.1 3.6 31 131-161 22-56 (294)
234 1xg5_A ARPG836; short chain de 25.9 1.5E+02 0.0051 25.1 6.7 84 131-218 31-120 (279)
235 3d8b_A Fidgetin-like protein 1 25.4 25 0.00086 31.8 1.6 23 132-154 117-141 (357)
236 2hly_A AGR_C_4178P, hypothetic 25.3 36 0.0012 28.6 2.3 29 118-146 165-195 (207)
237 2ged_A SR-beta, signal recogni 25.1 55 0.0019 25.7 3.5 38 113-150 28-68 (193)
238 2vp4_A Deoxynucleoside kinase; 25.0 26 0.00087 29.4 1.5 24 130-153 18-43 (230)
239 3h7a_A Short chain dehydrogena 25.0 2.6E+02 0.0088 23.3 8.0 82 131-218 6-92 (252)
240 3m1a_A Putative dehydrogenase; 24.8 3E+02 0.01 23.0 8.5 80 131-218 4-88 (281)
241 1iy8_A Levodione reductase; ox 24.5 2.2E+02 0.0075 23.8 7.5 84 131-218 12-101 (267)
242 2olj_A Amino acid ABC transpor 24.4 33 0.0011 29.9 2.1 24 132-155 50-75 (263)
243 1ly1_A Polynucleotide kinase; 24.4 38 0.0013 26.4 2.3 19 134-152 4-24 (181)
244 1njg_A DNA polymerase III subu 24.2 97 0.0033 24.7 5.0 40 116-156 30-71 (250)
245 4ag6_A VIRB4 ATPase, type IV s 24.0 38 0.0013 30.8 2.5 30 131-161 37-66 (392)
246 3ucx_A Short chain dehydrogena 23.8 2.2E+02 0.0076 23.8 7.4 80 130-214 9-94 (264)
247 4egb_A DTDP-glucose 4,6-dehydr 23.8 2.6E+02 0.0088 24.1 8.0 80 132-215 24-105 (346)
248 3r1i_A Short-chain type dehydr 23.6 2.8E+02 0.0095 23.5 8.1 83 130-218 30-118 (276)
249 4e3z_A Putative oxidoreductase 23.5 2.2E+02 0.0077 23.8 7.4 82 131-218 25-113 (272)
250 2o23_A HADH2 protein; HSD17B10 23.5 3.1E+02 0.011 22.5 8.7 80 131-218 11-95 (265)
251 3afn_B Carbonyl reductase; alp 23.3 2.4E+02 0.0084 23.0 7.5 80 131-214 6-91 (258)
252 2p5t_B PEZT; postsegregational 23.2 51 0.0017 28.0 3.0 24 131-154 31-56 (253)
253 3v2h_A D-beta-hydroxybutyrate 22.7 2.7E+02 0.0092 23.6 7.8 84 130-219 23-114 (281)
254 2zu0_C Probable ATP-dependent 22.7 44 0.0015 29.0 2.6 23 132-154 46-70 (267)
255 1b0u_A Histidine permease; ABC 22.7 37 0.0013 29.4 2.1 24 132-155 32-57 (262)
256 1zd8_A GTP:AMP phosphotransfer 22.4 34 0.0012 28.4 1.7 23 132-154 7-31 (227)
257 2pcj_A ABC transporter, lipopr 22.3 33 0.0011 28.9 1.6 23 132-154 30-54 (224)
258 2r8r_A Sensor protein; KDPD, P 22.3 47 0.0016 28.5 2.6 27 135-161 11-37 (228)
259 1lw7_A Transcriptional regulat 22.3 39 0.0013 30.6 2.2 24 132-155 170-195 (365)
260 2onk_A Molybdate/tungstate ABC 22.3 44 0.0015 28.5 2.4 23 133-155 25-49 (240)
261 3te6_A Regulatory protein SIR3 22.3 44 0.0015 30.1 2.5 22 134-156 50-71 (318)
262 2yz2_A Putative ABC transporte 22.3 38 0.0013 29.3 2.1 24 132-155 33-58 (266)
263 3i4f_A 3-oxoacyl-[acyl-carrier 22.2 2.2E+02 0.0076 23.6 7.1 84 131-218 6-94 (264)
264 3b9p_A CG5977-PA, isoform A; A 22.2 35 0.0012 29.4 1.8 23 132-154 54-78 (297)
265 2d2e_A SUFC protein; ABC-ATPas 22.1 45 0.0015 28.6 2.5 22 132-153 29-52 (250)
266 2r44_A Uncharacterized protein 21.9 29 0.001 30.6 1.2 23 131-154 48-70 (331)
267 3dl0_A Adenylate kinase; phosp 21.8 39 0.0013 27.6 1.9 21 134-154 2-24 (216)
268 3u9l_A 3-oxoacyl-[acyl-carrier 21.6 2.1E+02 0.0073 25.1 7.1 84 132-218 5-96 (324)
269 1ixz_A ATP-dependent metallopr 21.5 38 0.0013 28.5 1.9 42 113-154 23-73 (254)
270 3r3s_A Oxidoreductase; structu 21.2 2.4E+02 0.0081 24.2 7.2 83 131-218 48-137 (294)
271 3pxx_A Carveol dehydrogenase; 21.2 3.5E+02 0.012 22.6 8.2 87 130-219 8-109 (287)
272 2ce7_A Cell division protein F 21.1 54 0.0018 31.3 3.0 42 113-154 23-73 (476)
273 3is3_A 17BETA-hydroxysteroid d 21.0 3.1E+02 0.011 23.0 7.8 85 129-219 15-106 (270)
274 1ji0_A ABC transporter; ATP bi 20.9 41 0.0014 28.6 1.9 24 132-155 32-57 (240)
275 1vpl_A ABC transporter, ATP-bi 20.9 42 0.0014 29.0 2.1 24 132-155 41-66 (256)
276 2oap_1 GSPE-2, type II secreti 20.8 38 0.0013 32.6 1.8 21 134-154 262-284 (511)
277 2nq2_C Hypothetical ABC transp 20.7 40 0.0014 29.0 1.9 24 132-155 31-56 (253)
278 3ezl_A Acetoacetyl-COA reducta 20.7 2E+02 0.0068 23.8 6.4 83 131-218 12-100 (256)
279 1yo6_A Putative carbonyl reduc 20.7 3.3E+02 0.011 21.9 9.0 76 132-214 3-87 (250)
280 2v9p_A Replication protein E1; 20.6 60 0.0021 29.0 3.1 23 132-154 126-150 (305)
281 2npi_A Protein CLP1; CLP1-PCF1 20.6 19 0.00064 34.3 -0.4 43 113-159 123-167 (460)
282 1g6h_A High-affinity branched- 20.5 42 0.0014 28.9 1.9 24 132-155 33-58 (257)
283 3rih_A Short chain dehydrogena 20.5 3.9E+02 0.013 22.9 8.5 82 131-218 40-128 (293)
284 1rpn_A GDP-mannose 4,6-dehydra 20.4 4E+02 0.014 22.7 8.5 83 129-215 11-93 (335)
285 3nav_A Tryptophan synthase alp 20.4 1.8E+02 0.0061 25.4 6.1 18 75-93 115-132 (271)
286 1in4_A RUVB, holliday junction 20.4 85 0.0029 27.8 4.1 23 132-154 51-75 (334)
287 1jwy_B Dynamin A GTPase domain 20.3 52 0.0018 28.6 2.6 21 130-150 22-44 (315)
288 3rwb_A TPLDH, pyridoxal 4-dehy 20.3 2.4E+02 0.0082 23.4 6.8 81 130-218 4-89 (247)
289 2pjz_A Hypothetical protein ST 20.2 39 0.0013 29.4 1.6 23 132-154 30-54 (263)
290 1tq4_A IIGP1, interferon-induc 20.2 50 0.0017 30.9 2.5 24 132-155 69-94 (413)
291 1wiw_A Glucose-6-phosphate iso 20.1 33 0.0011 30.6 1.2 56 54-122 58-119 (290)
292 4da9_A Short-chain dehydrogena 20.1 3.3E+02 0.011 23.0 7.9 84 130-218 27-116 (280)
293 3oid_A Enoyl-[acyl-carrier-pro 20.1 3.2E+02 0.011 22.8 7.6 81 132-218 4-91 (258)
No 1
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=8.6e-53 Score=410.14 Aligned_cols=260 Identities=30% Similarity=0.442 Sum_probs=223.4
Q ss_pred cCHHHHHHHcCCeeccc-CCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCceEEE
Q 022062 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~ 105 (303)
|++++|++.+++++..+ ..|+++++|||.++| |++|+|++|.++|||+|+++|++ +||.+||++++.+ +++|+|.
T Consensus 4 ~~l~~i~~~~~~~~~~~~~~i~~i~~Dsr~v~~--g~lf~al~G~~~dgh~f~~~a~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (452)
T 1gg4_A 4 VTLSQLTDILNGELQGADITLDAVTTDTRKLTP--GCLFVALKGERFDAHDFADQAKA-GGAGALLVSRPLD-IDLPQLI 79 (452)
T ss_dssp EEHHHHHHHTTEEEESCCCEESCEESCGGGCCT--TCEEECCBCSSCBTTTTHHHHHH-TTCCEEEESSCCS-CSSCEEE
T ss_pred CcHHHHHHHhCCEEeCCCceEEEEEEeCCCcCC--CcEEEEeCCCCCCHHHHHHHHHH-cCCEEEEECCCcC-CCCCEEE
Confidence 68999999999987642 248999999999999 99999999999999999999999 9999999998654 2689999
Q ss_pred EcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCC
Q 022062 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (303)
Q Consensus 106 V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~ 185 (303)
|+ |++++|++|+..++. ..++++||||||||||||++||+++|++.| ++.++.|++|+.+|.|++++.++.++
T Consensus 80 v~-----~~~~~l~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~t~g~~n~~ig~p~t~~~~~~~~ 152 (452)
T 1gg4_A 80 VK-----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452)
T ss_dssp ES-----CHHHHHHHHHHHHHH-HSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred EC-----CHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeeccccccCCcchhHHHHcCCCCC
Confidence 99 999999999995543 245889999999999999999999997777 67789999999999999998888889
Q ss_pred CEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc--CC
Q 022062 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT--VP 263 (303)
Q Consensus 186 ~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~--~~ 263 (303)
+++|||+|+++.+++.++.+.++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|||+...+. ..
T Consensus 153 d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~ 232 (452)
T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhc
Confidence 9999999999999999988878999999999999999999999999999999999988889999999999887763 22
Q ss_pred CCCeEEEEecCC-CceEEEEEEEEeeCCCeEEEEEEEC
Q 022062 264 RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 264 ~~~~vit~g~~~-~ad~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
..++++||.+. ++|+++.+++ ....+..|.+..+
T Consensus 233 -~~~~~~~g~~~~~~d~~~~~~~--~~~~g~~~~~~~~ 267 (452)
T 1gg4_A 233 -SRKVWRFSPNAANSDFTATNIH--VTSHGTEFTLQTP 267 (452)
T ss_dssp -TSEEEEECSSCTTCSBEEEEEE--ECSSSEEEEEEET
T ss_pred -CCCEEEEeCCCCCCcEEEEEEE--EcCCceEEEEEEC
Confidence 26899999865 6789999888 7777888887654
No 2
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=9.1e-52 Score=402.95 Aligned_cols=252 Identities=25% Similarity=0.385 Sum_probs=223.8
Q ss_pred cCHHHHHHHcCCeec-c---cCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCCCCce
Q 022062 27 WTINEIAESVNGKIL-K---WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG 102 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~-~---~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~~~~~ 102 (303)
|++++|++.++|.+. . +..|+++++|||.++| |++|||++|. +|||+|+++|++ +||.+||++++.+ ++|
T Consensus 3 ~~~~~i~~~~~~~~~~~~~~~~~i~~i~~Dsr~v~~--g~lF~al~G~-~dgh~~~~~a~~-~Ga~~vv~~~~~~--~~p 76 (454)
T 2am1_A 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGT--GDLFVPLKGA-RDGHDFIETAFE-NGAAVTLSEKEVS--NHP 76 (454)
T ss_dssp CBHHHHHHHHTCSSCSTTSCCCBCCCEESCGGGCCT--TCEECCCBSS-SBGGGGHHHHHH-HTCSEEEESSCCC--SSC
T ss_pred CcHHHHHHHhCCcccCCCccCceeeeEEEeCCCCCC--CCEEEEccCC-cchHHHHHHHHH-CCCEEEEECCCCC--CCC
Confidence 699999999998862 1 1248999999999999 9999999999 999999999999 9999999998654 689
Q ss_pred EEEEcCCCcccHHHHHHHHHHHh-hcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc
Q 022062 103 FVQVEGNGNVNTLNSLVNMACYA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (303)
Q Consensus 103 ~i~V~~~~~~d~~~al~~la~~~-~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~ 181 (303)
+|.|+ |++++|++|+.++ .+| ++++|+||||||||||++||+++|++.| ++..+.|++|+.+|.|++++.+
T Consensus 77 ~i~v~-----~~~~al~~la~~~~~~~--~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~s~g~~n~~ig~p~t~~~~ 148 (454)
T 2am1_A 77 YILVD-----DVLTAFQSLASYYLEKT--TVDVFAVTGSNGKTTTKDMLAHLLSTRY-KTYKTQGNYNNEIGLPYTVLHM 148 (454)
T ss_dssp EEECS-----CHHHHHHHHHHHHHHHH--CCEEEEEECCCSSSCHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHHTC
T ss_pred EEEEC-----CHHHHHHHHHHHHhhCC--CCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeecCCccCcccchHHHHhcC
Confidence 99999 9999999999944 444 5789999999999999999999997777 5778999999999999999988
Q ss_pred cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc
Q 022062 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (303)
Q Consensus 182 ~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~ 261 (303)
+++++++|||+|+++.+++.++.+.++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|| +...+.
T Consensus 149 ~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~~ 227 (454)
T 2am1_A 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADP-IVEDYL 227 (454)
T ss_dssp CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGGC
T ss_pred CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHHH
Confidence 8899999999999899999998887899999999999999999999999999999999988888999999999 877665
Q ss_pred CCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEE
Q 022062 262 VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298 (303)
Q Consensus 262 ~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~ 298 (303)
.. ..++++||.+..+|+ .++. ....++.|.+.
T Consensus 228 ~~-~~~~~~~g~~~~~d~--~~i~--~~~~~~~~~~~ 259 (454)
T 2am1_A 228 PI-DKKVVRFGQGAELEI--TDLV--ERKDSLTFKAN 259 (454)
T ss_dssp CS-SSEEEEESTTSSBCE--EEEE--ECSSCEEEEET
T ss_pred hc-CCcEEEEeCCCCCce--eeeE--EeCCceEEEEE
Confidence 32 368999998766787 6777 77777778764
No 3
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=4.8e-51 Score=405.55 Aligned_cols=266 Identities=18% Similarity=0.205 Sum_probs=220.7
Q ss_pred CCCCCccCHHHHHHHcCCeecc---------cCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEE
Q 022062 21 PSNSPIWTINEIAESVNGKILK---------WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVI 91 (303)
Q Consensus 21 ~~~~~~~~l~~l~~~~~~~~~~---------~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv 91 (303)
|..+.+|++++|++.+++.+.. +..|++|++|||+++| |+||||++|+++|||+|+++|++ +||+++|
T Consensus 28 ~~~m~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~avv 104 (535)
T 2wtz_A 28 PNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSP--GDLFAALTGSTTHGARHVGDAIA-RGAVAVL 104 (535)
T ss_dssp CSCCCCCBHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCT--TEEEEECBCSSCBGGGGHHHHHH-TTCCEEE
T ss_pred CcccccccHHHHHhhccccccccccccccCCCcceeeEEecCCcCCC--CCEEEEeccccccHHHHHHHHHH-CCCeEEE
Confidence 3344447999999999887531 2249999999999999 99999999999999999999999 9999999
Q ss_pred EcccC----CC-CCceEEEEcCCCcccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 92 GNQVC----NN-WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 92 ~~~~~----~~-~~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
++++. +. +++|+|.|+ |++++|+.||+ ++++|+.++++||||||||||||++||+++|++.|+++. +.
T Consensus 105 ~~~~~~~~~~~~~~~~~i~v~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g-~~ 178 (535)
T 2wtz_A 105 TDPAGVAEIAGRAAVPVLVHP-----APRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG-LI 178 (535)
T ss_dssp ECHHHHHHHCSCCSSCEEECS-----SSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEE-EE
T ss_pred EecCcccccccCCCceEEEEC-----CHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEE-EE
Confidence 99742 11 158999999 99999999998 778888889999999999999999999999999998763 45
Q ss_pred CCCcCccc---hhhH--------H----hc-ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHH
Q 022062 166 GNWNNRVG---VALS--------L----IG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLE 229 (303)
Q Consensus 166 g~~n~~~g---~p~~--------l----~~-~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e 229 (303)
|+.++.++ .|.+ + .. .+.+++++|||+| |+.+++.|+.. ++|+++|||||++||+|+|||+|
T Consensus 179 gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e 256 (535)
T 2wtz_A 179 GTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS-SHALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMA 256 (535)
T ss_dssp SSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHH
T ss_pred CCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECC-Ccccccccccc-CCcCEEEEcCCChHHhhhcCCHH
Confidence 55433332 3322 1 22 3688999999999 78877788876 89999999999999999999999
Q ss_pred HHHHHHHHHhhcCC--CCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCc-eEEEEEEEEeeC-CCeEEEEEEEC
Q 022062 230 DVARAKGEIFQESK--LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG-GLGVQVVLEKE 300 (303)
Q Consensus 230 ~~~~aK~~l~~~~~--~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~a-d~~~~~i~~~~~-~~g~~f~l~~~ 300 (303)
+|+++|++||+.++ +.+.+|+|.|||+...+.... .++++||.+..+ |+++.++. .+ ..|+.|.+..+
T Consensus 257 ~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~-~~v~~~g~~~~~~d~~~~~i~--~~~~~g~~f~~~~~ 328 (535)
T 2wtz_A 257 DYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA-ADAITVSAADRPAHWRATDVA--PTDAGGQQFTAIDP 328 (535)
T ss_dssp HHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH-SSCEEEESSSSCCSEEEEEEE--EETTTEEEEEEECT
T ss_pred HHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhc-CCEEEEecCCCcCcEEEEEEE--EcCCCCeEEEEEeC
Confidence 99999999998765 678999999999988776211 168999987766 89999988 77 77888888654
No 4
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.9e-50 Score=395.78 Aligned_cols=259 Identities=18% Similarity=0.219 Sum_probs=212.6
Q ss_pred CHHHHHHHcCCeecccCCcceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC--------C
Q 022062 28 TINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--------W 99 (303)
Q Consensus 28 ~l~~l~~~~~~~~~~~~~i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~--------~ 99 (303)
++++|++.+... -.+..|++|++|||+++| |+||||++|+++|||+|+++|++ +||++||++++... .
T Consensus 4 ~~~~l~~~~~~~-~~~~~i~~v~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~avv~~~~~~~~~~e~~~~~ 79 (498)
T 1e8c_A 4 NLRDLLAPWVPD-APSRALREMTLDSRVAAA--GDLFVAVVGHQADGRRYIPQAIA-QGVAAIIAEAKDEATDGEIREMH 79 (498)
T ss_dssp BHHHHHTTTCTT-CCCCBCCCEESCGGGCCT--TCEEEECBCSSCBGGGGHHHHHH-TTCSEEEEECTTTCCTTCEEEET
T ss_pred hHHHHHhhcccC-CCCceeeeEEeeCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEcCccccccccccccC
Confidence 467777654320 012348999999999999 99999999999999999999999 99999999975311 1
Q ss_pred CceEEEEcCCCcccHHHHHHHHHH-HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe--EEecCCCcCccchh-
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNWNNRVGVA- 175 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~-~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~--~~t~g~~n~~~g~p- 175 (303)
++|+|.|+ |++++|+.|+. ++++|+.++++|+||||||||||++||+++|++.|+++ .++.++.++..+.|
T Consensus 80 ~~~~i~V~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~ 154 (498)
T 1e8c_A 80 GVPVIYLS-----QLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPT 154 (498)
T ss_dssp TEEEEEET-----THHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCC
T ss_pred CccEEEEC-----CHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeec
Confidence 57999999 99999999998 77888889999999999999999999999999999876 34454433332233
Q ss_pred -------hHH----hc-ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCC
Q 022062 176 -------LSL----IG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESK 243 (303)
Q Consensus 176 -------~~l----~~-~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~ 243 (303)
.++ .. .+.+++++|||+| |+.+++.|+.. ++|+++|||||++||+|+|||+|+|+++|++||+. +
T Consensus 155 ~~t~~~~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~ 231 (498)
T 1e8c_A 155 ENTTGSAVDVQHELAGLVDQGATFCAMEVS-SHGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-H 231 (498)
T ss_dssp SSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-S
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEEcC-Cchhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-C
Confidence 222 22 2688999999999 77777778776 79999999999999999999999999999999987 6
Q ss_pred CCCEEEEeCCChhhhhhcCCCCC---eEEEEecCCCc---eEEEEEEEEeeCCCeEEEEEEEC
Q 022062 244 LGDVCVLNADDPLVANLTVPRGV---RKVFFGWRRGC---DVRLVAAQVANGGLGVQVVLEKE 300 (303)
Q Consensus 244 ~~g~~Vin~Dd~~~~~~~~~~~~---~vit~g~~~~a---d~~~~~i~~~~~~~g~~f~l~~~ 300 (303)
+++.+|+|.|||+...+...... ++++||.+..+ |+++.++. ....++.|.+..+
T Consensus 232 ~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~--~~~~g~~f~~~~~ 292 (498)
T 1e8c_A 232 HCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVN--YHDSGATIRFSSS 292 (498)
T ss_dssp BCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEEEE--ECSSCEEEEEEET
T ss_pred CCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCCCCCcCCEEEEEEE--EcCCceEEEEEEC
Confidence 67899999999998877622112 78999987666 89999998 8888888888754
No 5
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=3.5e-32 Score=254.28 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=128.3
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEE----ecCCCcCc--cchhhHHhcccCCCCEEEEEecCCChhhHHHhhc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ----SYGNWNNR--VGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~----t~g~~n~~--~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~ 205 (303)
.++||||||||||||++||+++|+..|.++.. ..||+++. .+.|.++ ..+++.+++|+|+|+++.+.+.++..
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~~~p~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~ 186 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQ-DPNSQSPFFVIEADEYDTAFFDKRSK 186 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEECCCCCSS-CTTSCCCEEEEECCCSEEETTEEEEG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceecCCcccc-ccCCCCCEEEEEccccccchhhcccc
Confidence 68999999999999999999999999987632 23566543 4556555 45678999999999766544333222
Q ss_pred --ccCccEEEEcCCChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCC-CCCeEEEEecCCCceEEEE
Q 022062 206 --MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLV 282 (303)
Q Consensus 206 --~~~p~iaViTNi~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~-~~~~vit~g~~~~ad~~~~ 282 (303)
.++|+++|||||++||||+|+|+|+|+++|.+||+.+++++.+|+|.|||+...+... ...++++||. ++|+++.
T Consensus 187 ~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~--~~d~~~~ 264 (326)
T 3eag_A 187 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT--EHGWQAG 264 (326)
T ss_dssp GGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS--SSSEEEE
T ss_pred eeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC--CCcEEEE
Confidence 2699999999999999999999999999999999998889999999999999887621 2257899995 4789888
Q ss_pred EEEEeeCCCeEEEEEEECC
Q 022062 283 AAQVANGGLGVQVVLEKER 301 (303)
Q Consensus 283 ~i~~~~~~~g~~f~l~~~~ 301 (303)
++. . +|+ |.+..++
T Consensus 265 ~~~--~--~g~-f~~~~~~ 278 (326)
T 3eag_A 265 EAN--A--DGS-FDVLLDG 278 (326)
T ss_dssp EEC--T--TSC-EEEEETT
T ss_pred Eec--C--CcE-EEEEECC
Confidence 776 4 355 7776544
No 6
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=99.97 E-value=4.6e-30 Score=252.24 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=151.7
Q ss_pred ChhhcHHHhHhcCCceEEEEcccCCC--C--------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 022062 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (303)
Q Consensus 73 dg~~~i~~A~~~~GA~~vv~~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnG 142 (303)
+||.+ +.+ +||.+||+++.++. + ++|++.+. + . |+.+++. .++|+||||||
T Consensus 69 ~g~~~--~~~--~~a~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~-----~---~---l~~~~~~----~~vI~VTGTnG 129 (491)
T 2f00_A 69 FNHRP--ENV--RDASVVVVSSAISADNPEIVAAHEARIPVIRRA-----E---M---LAELMRF----RHGIAIAGTHG 129 (491)
T ss_dssp SSCCG--GGG--TTCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH-----H---H---HHHHHTT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----H---H---HHHHHcC----CCEEEEECCCC
Confidence 46655 234 58999999987642 1 57888666 4 2 3333333 58999999999
Q ss_pred CcHHHHHHHHHHHhCCCC-eEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhh
Q 022062 143 KSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (303)
Q Consensus 143 KTTt~~ml~~iL~~~g~~-~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dH 221 (303)
||||++||+++|++.|++ +...-|+.+ ..+.+.. ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 130 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 199 (491)
T 2f00_A 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK-AAGVHAR----LGHGRYLIAEADESDAS-----FLHLQPMVAIVTNIEADH 199 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCeec-ccccccc----CCCCCEEEEEeCCCccc-----hhcCCCCEEEEcCCChhh
Confidence 999999999999999986 333445544 3343321 24689999999977652 224799999999999999
Q ss_pred hhcc-CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEE
Q 022062 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299 (303)
Q Consensus 222 ld~~-gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~ 299 (303)
+|+| +|+|+|+++|.++|..+++++.+|+|.|||....+......++++||.+.++|+++.++. .+..++.|.+..
T Consensus 200 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~--~~~~~~~~~~~~ 276 (491)
T 2f00_A 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQ--QIGPQGHFTLLR 276 (491)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEE--EETTEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEE--EcCCceEEEEEE
Confidence 9999 899999999999999888889999999999988876322268999998777899999888 777788887754
No 7
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=99.97 E-value=2.6e-30 Score=253.03 Aligned_cols=196 Identities=20% Similarity=0.254 Sum_probs=150.5
Q ss_pred ChhhcHHHhHhcCCceEEEEcccCCC--C--------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 022062 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (303)
Q Consensus 73 dg~~~i~~A~~~~GA~~vv~~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnG 142 (303)
+||.+ +.+ +||.+||+++.++. + ++|++.+. + .| +++++. .++|+||||||
T Consensus 68 ~g~~~--~~~--~~a~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~-----~---~l---~~~~~~----~~vI~VTGTnG 128 (475)
T 1p3d_A 68 IGHAE--EHI--EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRA-----Q---ML---AEIMRF----RHGIAVAGTHG 128 (475)
T ss_dssp ESCCG--GGG--TTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHH-----H---HH---HHHHHT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----H---HH---HHHhcC----CCEEEEECCCC
Confidence 35554 234 58999999987642 1 57888666 4 33 333333 58999999999
Q ss_pred CcHHHHHHHHHHHhCCCC-eEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhh
Q 022062 143 KSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (303)
Q Consensus 143 KTTt~~ml~~iL~~~g~~-~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dH 221 (303)
||||++||+++|++.|++ +...-|+.+ ..+.+.. ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 129 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 198 (475)
T 1p3d_A 129 KTTTTAMISMIYTQAKLDPTFVNGGLVK-SAGKNAH----LGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDH 198 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCccc-ccccccc----cCCCCEEEEEecCCcCc-----cccccCCEEEEcCCChhh
Confidence 999999999999999986 333445544 3343321 24689999999976642 234799999999999999
Q ss_pred hhcc-CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEE
Q 022062 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299 (303)
Q Consensus 222 ld~~-gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~ 299 (303)
+|+| +|+|+|+++|.++|..+++++.+|+|.|||....+......++++||.+.++|+++.+++ .+..++.|.+..
T Consensus 199 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~--~~~~~~~f~~~~ 275 (475)
T 1p3d_A 199 MDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYE--QTGFQGHYTVIC 275 (475)
T ss_dssp GGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEE--EETTEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEE--EcCCceEEEEEE
Confidence 9999 899999999999999888899999999999988776211268999998777899999888 777777887754
No 8
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=99.97 E-value=2.1e-30 Score=256.58 Aligned_cols=252 Identities=12% Similarity=0.035 Sum_probs=162.1
Q ss_pred CCCccccCCCCCCccC-HHHHHHHcCCeecccCCcceEEeccCc-------cccCCCcEEEEecCCcCChhhcHHHhHhc
Q 022062 13 TSKTTFRCPSNSPIWT-INEIAESVNGKILKWGPPGIICTDTRI-------LAPNKNQWFFAITGQHFDAHEFISPELYG 84 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~i~~i~~dsr~-------v~~~~g~lFval~G~~~dg~~~i~~A~~~ 84 (303)
..++.+..+..+--|+ +..++...|..... .|.+. ++. .|--++. | |+. +-+.
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~--------sD~~~~~~~~~~L~~-~gi~~~~--G-----~~~--~~~~- 78 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTG--------SDANIYPPMSTQLEQ-AGVTIEE--G-----YLI--AHLQ- 78 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEE--------EESCCCTTHHHHHHH-TTCEEEE--S-----CCG--GGGC-
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEE--------ECCCCCcHHHHHHHH-CCCEEEC--C-----CCH--HHcC-
Confidence 3455555565555565 67888877765432 23322 211 0221211 2 211 1233
Q ss_pred CCceEEEEcccCCC--C--------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 85 ~GA~~vv~~~~~~~--~--------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.++..||+++.++. | ++|++... +. ++++.. ...++||||||||||||++||+++|
T Consensus 79 ~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~--------e~---l~~~~~---~~~~vIaVTGTnGKTTTt~li~~iL 144 (524)
T 3hn7_A 79 PAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGP--------QF---LSEQVL---QSRHVIAVAGTHGKTTTTTMLAWIL 144 (524)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHH--------HH---HHHHTG---GGSEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHH--------HH---HHHHHh---ccCcEEEEECCCCHHHHHHHHHHHH
Confidence 46788888876653 1 57777433 22 222211 1267999999999999999999999
Q ss_pred HhCCCCeEEec----------CCCcCccchhhHHhcc------cCCCCEEEEEecCCChhhHHHhhcc--cCccEEEEcC
Q 022062 155 ESLGVNVFQSY----------GNWNNRVGVALSLIGI------DRAVDIAVLEMGMSGKGEILELARM--ARPEIRVVLN 216 (303)
Q Consensus 155 ~~~g~~~~~t~----------g~~n~~~g~p~~l~~~------~~~~~~~V~E~~~s~~~~~~~l~~~--~~p~iaViTN 216 (303)
++.|+++.... +|+|+.+|.|..+... +.+++++|+|+|+++.+.+.++..+ ++|+++||||
T Consensus 145 ~~~G~~~~~~iGg~~~~~~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTN 224 (524)
T 3hn7_A 145 HYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNN 224 (524)
T ss_dssp HHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECC
T ss_pred HHcCCCceEEECCEeccccCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcC
Confidence 99998763223 3344556666443221 1346899999998776544332222 6999999999
Q ss_pred CChhhhhccCCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhc-CCCCCeEEEEecC--------------------C
Q 022062 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWR--------------------R 275 (303)
Q Consensus 217 i~~dHld~~gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~-~~~~~~vit~g~~--------------------~ 275 (303)
|++||||+|+|+|+|+++|.++|+.+++++.+|+|.|||++..+. .....++++||.+ .
T Consensus 225 I~~DHLd~~gs~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
T 3hn7_A 225 LEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAEN 304 (524)
T ss_dssp CCCC------CHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------C
T ss_pred CChHHccccCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCC
Confidence 999999999999999999999999988899999999999998875 2222578999975 2
Q ss_pred CceEEEEEEEEeeCCCeEEEEEEECC
Q 022062 276 GCDVRLVAAQVANGGLGVQVVLEKER 301 (303)
Q Consensus 276 ~ad~~~~~i~~~~~~~g~~f~l~~~~ 301 (303)
.+|+++.++. . +|+.|.+..++
T Consensus 305 ~~d~~~~~i~--~--~g~~f~l~~~~ 326 (524)
T 3hn7_A 305 SSDWQAELIS--A--DGSQFTVSFND 326 (524)
T ss_dssp CCSEEEEEEE--T--TTTEEEEEETT
T ss_pred CCcEEEEEEE--C--CceEEEEEECC
Confidence 5789888876 4 45677766543
No 9
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=99.97 E-value=8.2e-30 Score=250.72 Aligned_cols=191 Identities=17% Similarity=0.245 Sum_probs=146.7
Q ss_pred CCceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 85 KGCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 85 ~GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.++..||+++.++.. ++|++. -.+.+. ++.+. .++||||||||||||++||+++|
T Consensus 80 ~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~--------~~e~l~---~~~~~----~~~IaVTGTnGKTTTt~ml~~iL 144 (494)
T 4hv4_A 80 LDASVVVVSTAISADNPEIVAAREARIPVIR--------RAEMLA---ELMRY----RHGIAVAGTHGKTTTTAMLSSIY 144 (494)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHHTTCCEEE--------HHHHHH---HHHTT----SEEEEEECSSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEc--------HHHHHH---HHhcC----CCEEEEecCCChHHHHHHHHHHH
Confidence 368888888876531 577762 223333 33332 47999999999999999999999
Q ss_pred HhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhcc-CCHHHHHH
Q 022062 155 ESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVAR 233 (303)
Q Consensus 155 ~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~-gt~e~~~~ 233 (303)
+..|.++....|+..+.++.+.. + .+.+++|+|+|+++.. ...++|+++|||||++||+|+| +|+|+|++
T Consensus 145 ~~~g~~~~~~~gg~~~~~g~~~~---~-~~~d~~VlE~~e~~~s-----~~~~~P~iaVITNI~~DHld~~G~t~e~~a~ 215 (494)
T 4hv4_A 145 AEAGLDPTFVNGGLVKAAGTHAR---L-GSSRYLIAEADESDAS-----FLHLQPMVAIVTNIEADHMDTYQGDFENLKQ 215 (494)
T ss_dssp HHTTCCCEEEEEEEETTTTEEEE---C-CSSSEEEEECCCGGGG-----GGGCCCSEEEECCCCCSSCCSSTTHHHHHHH
T ss_pred HhcCCCCEEEECCcccccccccc---c-CCCcEEEEEccccccc-----cccccCCEEEEcCCCHHHhhhhccCHHHHHH
Confidence 99998632223332223443321 2 4689999999977542 2348999999999999999999 89999999
Q ss_pred HHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEECC
Q 022062 234 AKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKER 301 (303)
Q Consensus 234 aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~~~ 301 (303)
+|.++|+.+++++.+|+|.|||....+......++++||.+.++|+++.++. ....++.|.+..++
T Consensus 216 aK~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~--~~~~~~~f~~~~~~ 281 (494)
T 4hv4_A 216 TFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYR--QEGPQGHFTLRRQD 281 (494)
T ss_dssp HHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEE--EETTEEEEEEECTT
T ss_pred HHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEE--EeCCEEEEEEEECC
Confidence 9999999988899999999999998877322368999999888999999998 88888889887654
No 10
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=99.96 E-value=5.1e-30 Score=248.61 Aligned_cols=201 Identities=22% Similarity=0.265 Sum_probs=150.0
Q ss_pred ceEEeccCccccCCCcEEEEecCCcCC-hhhcHHHhHhcCCceEEEEcccCCCCCceEEEE--cCCCcccHHHHHHHHHH
Q 022062 47 GIICTDTRILAPNKNQWFFAITGQHFD-AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMAC 123 (303)
Q Consensus 47 ~~i~~dsr~v~~~~g~lFval~G~~~d-g~~~i~~A~~~~GA~~vv~~~~~~~~~~~~i~V--~~~~~~d~~~al~~la~ 123 (303)
.-..+|+|...+ +..|++ .|.+++ ||.+ .++++ |+.+||+++.++. +.|.+.+ + +...++.+++.
T Consensus 30 ~v~~~D~~~~~~--~~~~l~-~G~~~~~g~~~-~~~~~--~~d~vV~s~gi~~-~~p~~~~a~~-----~~~~v~~~~~~ 97 (439)
T 2x5o_A 30 TPRVMDTRMTPP--GLDKLP-EAVERHTGSLN-DEWLM--AADLIVASPGIAL-AHPSLSAAAD-----AGIEIVGDIEL 97 (439)
T ss_dssp CCEEEESSSSCT--TGGGSC-TTSCEEESSCC-HHHHH--TCSEEEECTTSCT-TCHHHHHHHH-----TTCEEECHHHH
T ss_pred EEEEEECCCCcc--hhHHhh-CCCEEEECCCc-HHHhc--cCCEEEeCCCCCC-CCHHHHHHHH-----CCCcEEEHHHH
Confidence 345799999988 888888 899886 7754 66776 8999999987653 1222221 1 11112233333
Q ss_pred HhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHh
Q 022062 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (303)
Q Consensus 124 ~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l 203 (303)
+++. .+.++|+||||||||||++||+++|++.|+++. +.|| +|.|++.... .+.+++|+|+|+ +.++++
T Consensus 98 ~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~-~~gn----ig~~~~~~~~-~~~d~~VlE~~~---~~l~~~ 166 (439)
T 2x5o_A 98 FCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG-VGGN----IGLPALMLLD-DECELYVLELSS---FQLETT 166 (439)
T ss_dssp HHHH--CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE-EEES----SSBCHHHHCC-TTCCEEEEECCH---HHHHTC
T ss_pred HHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEE-Eecc----cCHHHHHHhC-CCCCEEEEECCc---hhhccc
Confidence 3333 237899999999999999999999999998874 5555 5666654332 356999999984 345554
Q ss_pred hcccCccEEEEcCCChhhhhcc-CCHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCC
Q 022062 204 ARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (303)
Q Consensus 204 ~~~~~p~iaViTNi~~dHld~~-gt~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~ 275 (303)
+.++|+++|||||++||+|+| +|+|+|+++|.++|+. .+.+|+|.|||....+... ..++++||.+.
T Consensus 167 -~~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~ 234 (439)
T 2x5o_A 167 -SSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DERCVSFGVNM 234 (439)
T ss_dssp -CCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEETTCGGGSCSCCC-SSCCEEECSSS
T ss_pred -ccCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEeCCCHHHHHHhhc-CCcEEEEeCCC
Confidence 458999999999999999999 8999999999999964 6899999999988776532 36889999754
No 11
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=99.95 E-value=1.1e-27 Score=232.95 Aligned_cols=166 Identities=27% Similarity=0.289 Sum_probs=127.5
Q ss_pred CceEEEEcccCCCC----------CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 86 GA~~vv~~~~~~~~----------~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
++..||.++.++.. ++|++. + .+.+. .+. +.++||||||||||||++||+++|+
T Consensus 72 ~~d~vv~spgi~~~~p~~~~a~~~gi~v~~-------~-~e~~~---~~~-----~~~~IaVTGTnGKTTTt~ml~~iL~ 135 (451)
T 3lk7_A 72 DFCYMIKNPGIPYNNPMVKKALEKQIPVLT-------E-VELAY---LVS-----ESQLIGITGSNGKTTTTTMIAEVLN 135 (451)
T ss_dssp CEEEEEECTTSCTTSHHHHHHHHTTCCEEC-------H-HHHHH---HHC-----CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEECCcCCCCChhHHHHHHCCCcEEe-------H-HHHHH---Hhc-----CCCEEEEECCCCHHHHHHHHHHHHH
Confidence 38888888776531 567652 1 12222 221 2489999999999999999999999
Q ss_pred hCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCCHHHHHHH
Q 022062 156 SLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARA 234 (303)
Q Consensus 156 ~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt~e~~~~a 234 (303)
..|.++ ...|| +|.|+..... ..+.+++|+|+| ++. ++. ...++|+++|||||++||+|+|||+|+|+++
T Consensus 136 ~~g~~~-~~~Gn----ig~~~~~~~~~~~~~d~~VlE~~-s~~--l~~-~~~~~p~iaviTNI~~DHld~~gt~e~i~~a 206 (451)
T 3lk7_A 136 AGGQRG-LLAGN----IGFPASEVVQAANDKDTLVMELS-SFQ--LMG-VKEFRPHIAVITNLMPTHLDYHGSFEDYVAA 206 (451)
T ss_dssp HTTCCE-EEEET----SSSCHHHHTTTCCTTCEEEEECC-HHH--HTT-CSSCCCSEEEECCCCSCCHHHHSSHHHHHHH
T ss_pred hcCCCE-EEeee----cChhhhhhhhcCCCCCEEEEECC-ccc--ccc-ccccCCCEEEEcCCChhHhhhcCCHHHHHHH
Confidence 998877 34555 5666654433 357899999998 332 233 3458999999999999999999999999999
Q ss_pred HHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCC
Q 022062 235 KGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG 276 (303)
Q Consensus 235 K~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ 276 (303)
|.+||+.++++|.+|+|.|||....+......++++||.+..
T Consensus 207 K~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~ 248 (451)
T 3lk7_A 207 KWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEK 248 (451)
T ss_dssp HHGGGTTCCTTSEEEEETTSHHHHHHHTTCSSEEEEEESSSC
T ss_pred HHHHHhcCCCCCEEEEECCcHHHHHHHhhcCCeEEEEccCCC
Confidence 999999988899999999999998876322368999998653
No 12
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=99.95 E-value=1e-27 Score=235.36 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=134.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--EecC--CCcCc-----------------
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNR----------------- 171 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t~g--~~n~~----------------- 171 (303)
...+.+..|+.++++|+.++++|+||||||||||++||+++|++.|+++. .++. ++|.+
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 44566777888888999999999999999999999999999999999983 2332 22222
Q ss_pred --------------------cchhhHHhc----------ccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhh
Q 022062 172 --------------------VGVALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (303)
Q Consensus 172 --------------------~g~p~~l~~----------~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dH 221 (303)
.+.|+++++ .+.+++++|||+|+...+ ++ .+.++|+++|||||+.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~--d~-tn~i~p~vaVITnI~~DH 201 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRW--DA-TNVINAPVAVITPISIDH 201 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT--ST-TCSSCCSEEEECCCCCCB
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcc--cc-ccccCCCEEEECCcchhh
Confidence 123334332 267899999999865443 33 467899999999999999
Q ss_pred hhccC-CHHHHHHHHHHHhhcC---CCCCEEEEeCCChhhhhhc----CCCCCeEEEEecCCCceEEEEEEEEeeCCCeE
Q 022062 222 LESLG-SLEDVARAKGEIFQES---KLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293 (303)
Q Consensus 222 ld~~g-t~e~~~~aK~~l~~~~---~~~g~~Vin~Dd~~~~~~~----~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~ 293 (303)
+|+|| |+|+|+++|++||+.+ ++++.+|+|.|||....++ .....++++||. |+.+..+. ....+.
T Consensus 202 ld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~----d~~~~~~~--~~~~g~ 275 (487)
T 2vos_A 202 VDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS----EFAVLRRQ--IAVGGQ 275 (487)
T ss_dssp CSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT----TBEEEEEE--EETTEE
T ss_pred hhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC----ceEEEeec--cccCCc
Confidence 99999 8999999999999765 6788999999999765543 111257888874 46666666 555666
Q ss_pred EEEEEE
Q 022062 294 QVVLEK 299 (303)
Q Consensus 294 ~f~l~~ 299 (303)
.|.+..
T Consensus 276 ~~~~~~ 281 (487)
T 2vos_A 276 VLQLQG 281 (487)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 666643
No 13
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=99.95 E-value=3.2e-28 Score=235.20 Aligned_cols=171 Identities=27% Similarity=0.389 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--Ee--cCCCcC------------------
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QS--YGNWNN------------------ 170 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t--~g~~n~------------------ 170 (303)
+++++|+.|+ +|+.+.++|+||||||||||++||+++|++.|+++. .+ +.++|.
T Consensus 24 ~~~~~l~~lg----~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~ 99 (428)
T 1jbw_A 24 RILTLLHALG----NPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAV 99 (428)
T ss_dssp HHHHHHHHTT----CGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcC----CchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHH
Confidence 7877777665 456668999999999999999999999999999985 23 123331
Q ss_pred --------ccc-----hhhHHhcc----------cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-
Q 022062 171 --------RVG-----VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG- 226 (303)
Q Consensus 171 --------~~g-----~p~~l~~~----------~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g- 226 (303)
.+| .|++++++ +++++++|||+|+.+.++ ..++++|+++|||||++||+|+||
T Consensus 100 ~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~p~vaviTnI~~DHld~~g~ 176 (428)
T 1jbw_A 100 AFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTD---STNVITPVVSVLTEVALDHQKLLGH 176 (428)
T ss_dssp HHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTS---TTCSCCCSEEEECCCCSCCHHHHCS
T ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccc---ccccCCCCEEEECcCcHhhhhhhCC
Confidence 223 44444432 678999999999654443 245689999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC----CCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEEE
Q 022062 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK 299 (303)
Q Consensus 227 t~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~----~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~~ 299 (303)
|+|+|+++|+++|+ +++.+|+|.|||....+.. ....++++||. |+++.... .+..+..|.+..
T Consensus 177 t~e~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~--~~~~~~~~~~~~ 244 (428)
T 1jbw_A 177 TITAIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR----DFSVPKAK--LHGWGQRFTYED 244 (428)
T ss_dssp SHHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TEEEEEEE--ECSSSEEEEEEE
T ss_pred CHHHHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCc----cceeeccc--cccCCceEEEec
Confidence 99999999999995 5789999999998765541 11257899985 45555545 445566666543
No 14
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=99.95 E-value=7.6e-28 Score=233.31 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--Eec--CCCcCcc------------------
Q 022062 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV------------------ 172 (303)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t~--g~~n~~~------------------ 172 (303)
.+.+.++++.+++|+.+.++|+||||||||||+.||+++|++.|++|+ .|+ .++|+++
T Consensus 35 L~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~ 114 (437)
T 3nrs_A 35 LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQ 114 (437)
T ss_dssp CHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHH
Confidence 466777888888899999999999999999999999999999999983 444 4667655
Q ss_pred ------chhhHHhcc----------cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHHHHH
Q 022062 173 ------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAK 235 (303)
Q Consensus 173 ------g~p~~l~~~----------~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~~aK 235 (303)
+.|++.+++ ++++|++|||+|+++..+ . .++++|+++|||||+.||+|+|| |+|+|+++|
T Consensus 115 v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld--~-tnii~p~vaVITnI~~DHld~lG~t~e~ia~~K 191 (437)
T 3nrs_A 115 IEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLD--A-TNIVDSDVAAITSIALDHTDWLGYDRESIGREK 191 (437)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTS--G-GGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccc--c-ccccCCCEEEEcCccHHHHHHhCCcHHHHHHHH
Confidence 234433322 689999999999765443 3 45689999999999999999999 899999999
Q ss_pred HHHhhcCCCCCEEEEeCCChh--hhhhcCCCCCeEEEEecC
Q 022062 236 GEIFQESKLGDVCVLNADDPL--VANLTVPRGVRKVFFGWR 274 (303)
Q Consensus 236 ~~l~~~~~~~g~~Vin~Dd~~--~~~~~~~~~~~vit~g~~ 274 (303)
++||+ +++.+|+|.||+. +...+....+++++||.+
T Consensus 192 a~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~ 229 (437)
T 3nrs_A 192 AGVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVA 229 (437)
T ss_dssp GGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT
T ss_pred Hhhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEeccc
Confidence 99995 5789999988864 223221112688899864
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=99.94 E-value=4.9e-27 Score=227.97 Aligned_cols=170 Identities=20% Similarity=0.256 Sum_probs=120.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--Ee--cCCCcCcc---c------------
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QS--YGNWNNRV---G------------ 173 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t--~g~~n~~~---g------------ 173 (303)
+++++|..|+ +|..+.++|+||||||||||++||+++|++.|+++. .| ++++|+++ |
T Consensus 37 ~~~~~l~~lg----~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~ 112 (442)
T 1o5z_A 37 RISMLLSKLG----NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIY 112 (442)
T ss_dssp HHHHHHHHTT----CGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcC----CchhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHH
Confidence 7777776665 455568999999999999999999999999999985 33 24555443 2
Q ss_pred ---------------hhhHHhcc----------cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-C
Q 022062 174 ---------------VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-S 227 (303)
Q Consensus 174 ---------------~p~~l~~~----------~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t 227 (303)
.|++++++ +.+++++|||+|++...+ . .++++|+++|||||+.||+|+|| |
T Consensus 113 ~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d--~-t~~~~P~vaViTnI~~DHld~~G~t 189 (442)
T 1o5z_A 113 ETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLD--A-TNVVFPLCSTIVTVDRDHEKTLGYT 189 (442)
T ss_dssp HHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTC--G-GGGCCCSCEEECCCCC-------CC
T ss_pred HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc--c-cccCCCCEEEECCccHhhhhhhCcC
Confidence 22333222 678999999999765544 2 45689999999999999999999 9
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEeCCChhhhhhcC----CCCCeEEEEecCCCceEEEEEEEEeeCCCeEEEEEE
Q 022062 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLE 298 (303)
Q Consensus 228 ~e~~~~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~----~~~~~vit~g~~~~ad~~~~~i~~~~~~~g~~f~l~ 298 (303)
+|+|+++|+++|+ +++.+|+|.||+....+.. ....++++||. |+++.... ....+..|.+.
T Consensus 190 ~e~ia~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~----d~~~~~~~--~~~~~~~~~~~ 255 (442)
T 1o5z_A 190 IEQIAWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDK----DFSVKVKS--LKLHENRFDYC 255 (442)
T ss_dssp HHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TBEEEEEE--CCTTCEEEEEE
T ss_pred HHHHHHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCc----ceeeeccc--cccCCceEEEe
Confidence 9999999999996 5788999999998766541 11257889985 45555555 45455656553
No 16
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=99.94 E-value=2.2e-25 Score=217.86 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=130.9
Q ss_pred CceEEEEcccCCC----------CCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 86 GCVGVIGNQVCNN----------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 86 GA~~vv~~~~~~~----------~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
++..||.++.++. .++|++... +.|.+++..+ +.++|+||||||||||++||+++|+
T Consensus 71 ~~d~vV~spgi~~~~p~~~~a~~~gi~v~~~~--------e~l~~~~~~~-----~~~vI~VTGTnGKTTTt~ml~~iL~ 137 (469)
T 1j6u_A 71 DPDLVIKTPAVRDDNPEIVRARMERVPIENRL--------HYFRDTLKRE-----KKEEFAVTGTDGKTTTTAMVAHVLK 137 (469)
T ss_dssp CCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH--------HHHHHHHHHH-----CCCEEEEECSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCHHHHHHHHcCCcEEEHH--------HHHHHHHhcc-----CCCEEEEECCCCHHHHHHHHHHHHH
Confidence 4556666655442 157777444 4555554321 3679999999999999999999999
Q ss_pred hCCCCe-EEecCCCcCccc-hhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccCC-HHHHH
Q 022062 156 SLGVNV-FQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVA 232 (303)
Q Consensus 156 ~~g~~~-~~t~g~~n~~~g-~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~gt-~e~~~ 232 (303)
+.|+++ ..+-|+.++ ++ .+.. + .+.+ +|+|+++++. ....++|+++|||||++||+|+||+ +|+|+
T Consensus 138 ~~G~~~~~~~~g~~~~-~g~~~~~---~-~~~~-~V~E~~~~~~-----~~~~~~p~vaviTNI~~DHld~~g~t~e~ia 206 (469)
T 1j6u_A 138 HLRKSPTVFLGGIMDS-LEHGNYE---K-GNGP-VVYELDESEE-----FFSEFSPNYLIITNARGDHLENYGNSLTRYR 206 (469)
T ss_dssp HTTCCCEEECSSCCTT-STTSSEE---C-CSSC-EEEEECTTSG-----GGGGCCCSEEEECCCCCCCGGGGTTCHHHHH
T ss_pred HcCCCceEEECCeecc-cCccccc---c-CCCC-EEEECCCccC-----ccccccCCEEEEcCCCcchhhhhcCHHHHHH
Confidence 999887 445556544 44 3332 2 3467 9999985532 2335799999999999999999999 99999
Q ss_pred HHHHHHhhcCCCCCEEEEeCCChhhhhhcCCCCCeEEEEecCCCceEEEEEEEEeeCCCe-EEEEEEEC
Q 022062 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLG-VQVVLEKE 300 (303)
Q Consensus 233 ~aK~~l~~~~~~~g~~Vin~Dd~~~~~~~~~~~~~vit~g~~~~ad~~~~~i~~~~~~~g-~~f~l~~~ 300 (303)
++|.+++..++ .+|+|.|||....+ ++++||.+. +|+++ ++. ....+ ..|.+..+
T Consensus 207 ~ak~~~~~~~~---~~V~n~dd~~~~~~------~~~~~g~~~-~d~~~-~~~--~~~~~~~~f~~~~~ 262 (469)
T 1j6u_A 207 SAFEKISRNTD---LVVTFAEDELTSHL------GDVTFGVKK-GTYTL-EMR--SASRAEQKAMVEKN 262 (469)
T ss_dssp HHHHHHHHTCS---EEEEETTCTTTGGG------CSEEECSSS-SSEEE-EEE--EECSSCEEEEEEET
T ss_pred HHHHHHHhhCC---EEEEECCChhhccc------eEEEEECCC-ceEEE-EEE--ECCCCCEEEEEEEC
Confidence 99999998754 89999999976532 578999766 78888 777 66666 67776543
No 17
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=99.93 E-value=1.8e-26 Score=222.39 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=112.0
Q ss_pred HHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeE--Eec--CCCcCcc-----------------------
Q 022062 120 NMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV----------------------- 172 (303)
Q Consensus 120 ~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~--~t~--g~~n~~~----------------------- 172 (303)
++.+.+++|+.+.++|+||||||||||++||+++|++.|+++. .+. +++|+++
T Consensus 37 ~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~ 116 (422)
T 1w78_A 37 LVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESAR 116 (422)
T ss_dssp HHHHHHTCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHh
Confidence 3444556788889999999999999999999999999999983 333 3555432
Q ss_pred -chhhHHhcc----------cCCCCEEEEEecCCChhhHHHhhcccCccEEEEcCCChhhhhccC-CHHHHHHHHHHHhh
Q 022062 173 -GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARAKGEIFQ 240 (303)
Q Consensus 173 -g~p~~l~~~----------~~~~~~~V~E~~~s~~~~~~~l~~~~~p~iaViTNi~~dHld~~g-t~e~~~~aK~~l~~ 240 (303)
+.|++++++ +.+++++|||+|+++.++ ..+.++|+++|||||++||+|+|| |+|+|+++|+++|+
T Consensus 117 ~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d---~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~ 193 (422)
T 1w78_A 117 GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLD---ATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR 193 (422)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTS---GGGGSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC
T ss_pred ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccc---cccCCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc
Confidence 234333322 678999999999876554 345689999999999999999999 89999999999995
Q ss_pred cCCCCCEEEEeCCChhh--hhhcCCCCCeEEEEec
Q 022062 241 ESKLGDVCVLNADDPLV--ANLTVPRGVRKVFFGW 273 (303)
Q Consensus 241 ~~~~~g~~Vin~Dd~~~--~~~~~~~~~~vit~g~ 273 (303)
+++.+|+|.||+.. .........++++||.
T Consensus 194 ---~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~ 225 (422)
T 1w78_A 194 ---SEKPAIVGEPEMPSTIADVAQEKGALLQRRGV 225 (422)
T ss_dssp ---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTT
T ss_pred ---CCCcEEEcCccHHHHHHHHHHHcCCceEEeCc
Confidence 46789999887642 1222111257889985
No 18
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=91.99 E-value=0.38 Score=44.22 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=59.5
Q ss_pred ccCHHHHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC-CCCce
Q 022062 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKG 102 (303)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~-~~~~~ 102 (303)
.|+++||++.+++++.++.. ++++.. -+...+ ++|-|. +...|.+.+.. -.|.++++.++.. ....+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~-~~~a~~--~~i~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~ 72 (341)
T 3eh0_A 3 SIRLADLAQQLDAELHGDGDIVITGVAS-MQSAQT--GHITFM------VNPKYREHLGL-CQASAVVMTQDDLPFAKSA 72 (341)
T ss_dssp CEEHHHHHHHTTCEEESCSCCEECEECC-TTTCCT--TEEEEC------CCSSGGGGGGG-CCCSEEEECTTTGGGCCSC
T ss_pred cccHHHHHHHhCCEEeCCCCceEeeeec-cccCCC--CeEEEe------CCHHHHHHHhh-CCCCEEEECHHHhhhhccc
Confidence 36899999999999886543 666543 345677 888765 33455555555 5677788776432 12344
Q ss_pred EEEEcCCCcccHHHHHHHHHHHhhc
Q 022062 103 FVQVEGNGNVNTLNSLVNMACYARN 127 (303)
Q Consensus 103 ~i~V~~~~~~d~~~al~~la~~~~~ 127 (303)
.+.++ |+..+++.+.+++..
T Consensus 73 ~~~~~-----~p~~~~~~~~~~~~~ 92 (341)
T 3eh0_A 73 ALVVK-----NPYLTYARMAQILDT 92 (341)
T ss_dssp EEECS-----CHHHHHHHHHHHHCC
T ss_pred eEEeC-----CHHHHHHHHHHHhcc
Confidence 68899 999999999985543
No 19
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=91.54 E-value=0.76 Score=42.60 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred CCcEEEEeCCC---CCcHHHHHHHHHHHhCCCCeEE--ecC--C-CcCccchhhH--------------Hhcc-cCCCCE
Q 022062 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ--SYG--N-WNNRVGVALS--------------LIGI-DRAVDI 187 (303)
Q Consensus 131 ~~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~~~--t~g--~-~n~~~g~p~~--------------l~~~-~~~~~~ 187 (303)
+.+.|.||||. |||+|+..|.+.|++.|+++.. +.. . .+...|.|+. +... .++.++
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 35679999984 9999999999999999999732 111 0 1122232211 0112 467899
Q ss_pred EEEEec--CCChh----hHHHhhcccCccEEEEcC-CChhhhhcc------CCHHHHHHHHHHH
Q 022062 188 AVLEMG--MSGKG----EILELARMARPEIRVVLN-VGDSHLESL------GSLEDVARAKGEI 238 (303)
Q Consensus 188 ~V~E~~--~s~~~----~~~~l~~~~~p~iaViTN-i~~dHld~~------gt~e~~~~aK~~l 238 (303)
.++|-. ..++. .+..+ ...+|+..|+.- -++.|++.| +++++..+.-..+
T Consensus 248 ivVEGqGgl~~P~~~~v~~~ll-~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l 310 (350)
T 2g0t_A 248 VFVEGQGALRHPAYGQVTLGLL-YGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETL 310 (350)
T ss_dssp EEEECCSCTTCTTTHHHHHHHH-HHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHS
T ss_pred EEEccCeeccccCchHHHHHHH-cCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHh
Confidence 999974 22222 22223 347999999965 566666554 6677766554443
No 20
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.39 E-value=0.35 Score=40.48 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHHHHH-HhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 115 LNSLVNMAC-YARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 115 ~~al~~la~-~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.+..|+. ....+..+..+|+|+|.+ ||||++.+|...|...+.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 345556665 222223446799999987 899999999999977777663
No 21
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.36 E-value=0.37 Score=42.74 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 115 ~~al~~la~--~~~~p~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|.+.|.+|.
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVL 115 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTL 115 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 456666544 23233456789999965 6899999999999988899985
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.63 E-value=0.19 Score=41.65 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=26.9
Q ss_pred CcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|++|+|+ |-.||||++..|+..|...|.+|.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl 34 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIA 34 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4788898 557899999999999988998884
No 23
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=90.56 E-value=0.45 Score=44.08 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=62.4
Q ss_pred cCHHHHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCC--CC-Cc
Q 022062 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NW-DK 101 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~--~~-~~ 101 (303)
|+|+||++.+++++.++.. |+++..= ....+ ++|=|. +...|.+.+.+ -.|.++|+.+... .+ ..
T Consensus 8 ~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~~~f~------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 77 (357)
T 4e79_A 8 YRLDELAHLVKGELIGEGSLQFSNLASL-ENAEV--NHLTFV------NGEKHLDQAKV-SRAGAYIVTAALKEHLPEKD 77 (357)
T ss_dssp EEHHHHHHHTTCEEESCTTCEECEECCT-TTCCT--TEEEEC------CSGGGHHHHHT-CCCSEEEECHHHHHTCTTCC
T ss_pred ccHHHHHHHhCCEEECCCCceEEeecCh-hcCCC--CcEEEe------CChhHHHHHhc-CCCEEEEEcHHHhhhccCCc
Confidence 6999999999999887543 7777654 34567 888665 44578877666 7788888876421 12 35
Q ss_pred eEEEEcCCCcccHHHHHHHHHHHhh
Q 022062 102 GFVQVEGNGNVNTLNSLVNMACYAR 126 (303)
Q Consensus 102 ~~i~V~~~~~~d~~~al~~la~~~~ 126 (303)
+.+.++ |+..+++++.+++.
T Consensus 78 ~~i~~~-----~p~~~~~~~~~~~~ 97 (357)
T 4e79_A 78 NFIIVD-----NPYLAFAILTHVFD 97 (357)
T ss_dssp EEEECS-----CHHHHHHHHHTTSS
T ss_pred cEEEEC-----CHHHHHHHHHHHhc
Confidence 788899 99999999988443
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.37 E-value=0.24 Score=42.93 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++.|-|||| .|||+++..|.+.|.+.|+++.
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~ 37 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL 37 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 45788999999 5999999999999999999873
No 25
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.31 E-value=0.46 Score=42.73 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 115 ~~al~~la~--~~~~p~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|.+.|.+|.
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 137 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 137 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEE
Confidence 456655543 22222455789999976 6899999999999988898884
No 26
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.75 E-value=0.28 Score=40.69 Aligned_cols=32 Identities=25% Similarity=0.063 Sum_probs=27.2
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++|+|+|.. ||||+...|...|...|+++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 47899999975 999999999999988888873
No 27
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=89.70 E-value=0.73 Score=42.92 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=59.2
Q ss_pred cCHHHHHHHcCCeecccCC--cceEEeccCccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccC-CCCCceE
Q 022062 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NNWDKGF 103 (303)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~--i~~i~~dsr~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~-~~~~~~~ 103 (303)
|+++||++.+++++.++.. ++++..= ++..+ ++|-|. +...|.+.+.+ -.|.++++.+.. .....+.
T Consensus 26 ~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~l~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 95 (372)
T 3pmo_A 26 YTLGQLAAHVGAEVRGDADLPIQGLATL-QEAGP--AQLSFL------ANPQYRKYLPE-SRAGAVLLTAADADGFAGTA 95 (372)
T ss_dssp EEHHHHHHHHTCEEESCTTCEEEEEECG-GGCCT--TSEEEC------CCGGGGGGGGG-CCCSEEEECHHHHTTCSSCE
T ss_pred ccHHHHHHHhCCEEECCCCceEeeecCh-hhCCC--CeEEEE------CCHHHHHHHhc-CCCcEEEEcHHHHhhccccE
Confidence 6899999999999877543 6676543 45667 888664 34466665555 567778877642 2113467
Q ss_pred EEEcCCCcccHHHHHHHHHHHhh
Q 022062 104 VQVEGNGNVNTLNSLVNMACYAR 126 (303)
Q Consensus 104 i~V~~~~~~d~~~al~~la~~~~ 126 (303)
+.++ |+..++..+.+++.
T Consensus 96 l~~~-----~p~~~~~~~~~~~~ 113 (372)
T 3pmo_A 96 LVVA-----NPYLAYASLSHLFD 113 (372)
T ss_dssp EECS-----CHHHHHHHHHGGGC
T ss_pred EEEC-----CHHHHHHHHHHHhc
Confidence 8899 99999988888553
No 28
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=89.44 E-value=0.56 Score=41.97 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHH--HhhcCCCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 115 ~~al~~la~--~~~~p~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|.+.|.+|.
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 455555543 22233455789999876 5899999999999988888884
No 29
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.35 E-value=0.29 Score=44.63 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.1
Q ss_pred CCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.++|||+| =.|||||+--|+..|.+.|++|.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 368999995 56899999999999999999984
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.50 E-value=0.31 Score=41.08 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=25.8
Q ss_pred cEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+||++ .||||++.-|+..|.+.|++|.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVl 34 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTA 34 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 46788776 7899999999999988998874
No 31
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.46 E-value=0.38 Score=41.04 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCcEEEEe---CCCCCcHHHHHHHHHHHhC-CCCeE
Q 022062 131 SGVLVGVT---GSVGKSTTKSMIALALESL-GVNVF 162 (303)
Q Consensus 131 ~~~vIgVT---GTnGKTTt~~ml~~iL~~~-g~~~~ 162 (303)
.+++|+|+ |-.||||++..|+..|... |++|.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 38 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVL 38 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEE
Confidence 46789998 5578999999999999777 88874
No 32
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=86.88 E-value=1.3 Score=42.27 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHH-HHHHHHHHHh
Q 022062 134 LVGVTGSVGKSTT-KSMIALALES 156 (303)
Q Consensus 134 vIgVTGTnGKTTt-~~ml~~iL~~ 156 (303)
+|||| |||||++ +.+|++-|++
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLES 145 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHH
Confidence 89999 9999998 8888888854
No 33
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.03 E-value=0.56 Score=40.70 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCcEEEEeCCC---CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~~ 162 (303)
++++|+|++.. ||||++..|+..|...|++|.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 39 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVL 39 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 46899998654 799999999999988898884
No 34
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=84.60 E-value=0.86 Score=40.10 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCcEEEEeCCC---CCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGTn---GKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+++.|-||||. |||+++..|.+.|++.|+++.
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~ 59 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 457889999986 899999999999999999873
No 35
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.49 E-value=0.8 Score=38.80 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.5
Q ss_pred cEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|+++ .||||++..|+..|.+.|++|.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL 35 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 57888754 5899999999999988898874
No 36
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.11 E-value=2.5 Score=35.23 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCC
Q 022062 115 LNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLG 158 (303)
Q Consensus 115 ~~al~~la~~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g 158 (303)
.+.+..|+.....-..+..+|+|.|-| ||||+..+|+.++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 345566666332202346799999987 89999999999997544
No 37
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=82.98 E-value=0.93 Score=40.11 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=26.2
Q ss_pred cEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|+ |-.||||++..|+..|...|++|.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 37 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVA 37 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 588998 567899999999999988998884
No 38
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=82.59 E-value=1.6 Score=38.48 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEE---eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGV---TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgV---TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+..+..+-+..+. ..+.-+|+. -|-.||||++..|+..|...|++|.
T Consensus 18 ~~~~~~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVl 69 (298)
T 2oze_A 18 EELKILEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVL 69 (298)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEE
Confidence 444455555443332 222323333 4578999999999999988899884
No 39
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.49 E-value=1 Score=40.34 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCC
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~ 159 (303)
+..+|||||.. ||||++.+|++.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~ 34 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGV 34 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 35689999985 899999999999864444
No 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=81.88 E-value=1.2 Score=38.90 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.8
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.|-|||| .|||+++..|.+.|++.|+++.
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~ 54 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceE
Confidence 578999999 6999999999999999998873
No 41
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.58 E-value=1.2 Score=40.42 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=26.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|+|.+ |||||+..|+..|...+.++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5689999875 799999999999988888874
No 42
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.09 E-value=0.99 Score=39.18 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+.++|+|++. .||||++..|+..|. .|++|.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVL 59 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 345789999766 479999999999996 888874
No 43
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.07 E-value=1.4 Score=35.86 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=25.4
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
.|+++|. .||||.+.+|++.|...|.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 5888885 689999999999998888887644
No 44
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.71 E-value=1.2 Score=38.45 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.8
Q ss_pred cEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|++ -.||||++..|+..|...|++|.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVT 35 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 5677764 56899999999999988898874
No 45
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=80.51 E-value=1.6 Score=37.93 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.5
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++|+|+++ .||||++..|+..|...|++|.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vl 51 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVG 51 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 578888865 5799999999999988898874
No 46
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.49 E-value=1.4 Score=39.17 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=27.0
Q ss_pred CCCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++++|+|+| -.||||++.-|+..|.+.|++|.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vl 73 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 73 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 3567888874 46799999999999988999984
No 47
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=80.44 E-value=1.4 Score=40.82 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=29.3
Q ss_pred hcCCCCCcEEEEe---CCCCCcHHHHHHHHHHHh------CCCCeE
Q 022062 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALES------LGVNVF 162 (303)
Q Consensus 126 ~~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~~------~g~~~~ 162 (303)
+.+....++|+|+ |-.||||++..|+..|.. .|++|.
T Consensus 102 ~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVl 147 (398)
T 3ez2_A 102 RDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRIL 147 (398)
T ss_dssp GGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEE
T ss_pred CcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 4445568899998 557899999999999963 588873
No 48
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=80.23 E-value=1.4 Score=37.67 Aligned_cols=30 Identities=33% Similarity=0.446 Sum_probs=25.4
Q ss_pred cEEEEeC---CCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTG---TnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+|++ -.||||++..|+..|...|++|.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 5788864 46899999999999988999884
No 49
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=80.00 E-value=0.82 Score=39.61 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
|..+.|...... +..++.+|+|||. .||||++.+|+..|
T Consensus 6 ~~~~~~~~~~~~---~~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 6 DSEQTLQNHQQP---NGGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred chHHHHHHhhhc---cCCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 666777666652 1334678999997 59999999999987
No 50
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=79.94 E-value=0.86 Score=42.51 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=22.7
Q ss_pred cCCCCCcEEEEe---CCCCCcHHHHHHHHHHH------hCCCCeE
Q 022062 127 NSRFSGVLVGVT---GSVGKSTTKSMIALALE------SLGVNVF 162 (303)
Q Consensus 127 ~p~~~~~vIgVT---GTnGKTTt~~ml~~iL~------~~g~~~~ 162 (303)
.+..+.++|+|+ |-.||||++..|+..|. ..|++|.
T Consensus 106 ~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVl 150 (403)
T 3ez9_A 106 DIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRIL 150 (403)
T ss_dssp HHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEE
T ss_pred CCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 334567899999 66799999999999996 3578873
No 51
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=79.72 E-value=4.9 Score=38.34 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=25.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|.++|.+ |||||+.-|+..|...|.++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4678888765 799999999999988888874
No 52
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.72 E-value=1.6 Score=39.46 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
...+++|.|+ |-.||||++.-++..|.+.|++|.
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVL 46 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTL 46 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEE
Confidence 3344677776 777899999999999988999984
No 53
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.66 E-value=3.9 Score=38.88 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+++|-+ |||||+..|+..|...|.++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5688888865 599999999999998998873
No 54
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.56 E-value=0.93 Score=40.76 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=24.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHh-CCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALES-LGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~-~g~~~~ 162 (303)
..+|+++|.+ ||||+...|+..+.. .|.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 4566666654 899999999999974 787773
No 55
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.00 E-value=1.8 Score=39.07 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|+|-+ |||||...|+..|...+.++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 4689999876 799999999999988887773
No 56
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=78.15 E-value=1.6 Score=36.68 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=38.4
Q ss_pred EEEEe---CCCCCcHHHHHHHHHHHhCCCCeEEe-cCCCcC---ccc---hh-----h-HHhcccCCCCEEEEEecCC
Q 022062 134 LVGVT---GSVGKSTTKSMIALALESLGVNVFQS-YGNWNN---RVG---VA-----L-SLIGIDRAVDIAVLEMGMS 195 (303)
Q Consensus 134 vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~~t-~g~~n~---~~g---~p-----~-~l~~~~~~~~~~V~E~~~s 195 (303)
+|+|+ |-.||||++..|+..|...| +|..- .....+ ..+ .| . .+..+....|++|+.++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 56665 67799999999999998888 88431 111110 000 00 0 1223456789999999854
No 57
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.05 E-value=2.8 Score=37.44 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCCCcEEEEeCC--CCCcHHHHHHHHHHHhC
Q 022062 129 RFSGVLVGVTGS--VGKSTTKSMIALALESL 157 (303)
Q Consensus 129 ~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~ 157 (303)
..+..+|||+|. .||||++.+|...|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 344678999996 68999999999999654
No 58
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.70 E-value=2.3 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.0
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
+|+++|. .||||.+.+|+.-|...|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5777776 589999999999997778877543
No 59
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.15 E-value=1.9 Score=35.68 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=26.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|+|- .||||++.+|++-|...++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 457889886 6999999999999987787763
No 60
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=76.67 E-value=2 Score=35.52 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+..+|+|+|- .||||.+.+|+.-|...++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3468999987 689999999999997777766
No 61
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=76.62 E-value=2.3 Score=38.94 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCcEEEEe---CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVT---GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+++|.|+ |-.||||++.-++..|...|++|.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVL 58 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVV 58 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 456777777 667899999999999988999984
No 62
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=76.48 E-value=2.2 Score=34.37 Aligned_cols=30 Identities=37% Similarity=0.364 Sum_probs=24.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|.|+|. .||||.+..|++-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 46777776 6899999999999976776653
No 63
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=76.13 E-value=3.3 Score=37.74 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=27.9
Q ss_pred HHHHHHHH-HhhcC-CCCCcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 116 NSLVNMAC-YARNS-RFSGVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 116 ~al~~la~-~~~~p-~~~~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
++|..+.. +...+ .....+|||+|.+ ||||++.+|..+|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444443 55543 2334589999975 79999999999995
No 64
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.02 E-value=2.6 Score=34.06 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=25.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+++|.+ ||||+..+|+..|...|++++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 4678899985 899999999999977777765
No 65
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=75.97 E-value=1.4 Score=36.58 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
+..+|||+|-| ||||+..+|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999986 69999999999983
No 66
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=75.46 E-value=2.1 Score=37.59 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.3
Q ss_pred CcEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+++|+|+ |-.||||++..|+..|...|++|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4566664 557999999999999988899884
No 67
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=75.37 E-value=1.8 Score=37.27 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|||+|-| ||||++.+|+.+|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999987 7999999999988
No 68
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=75.06 E-value=2.2 Score=36.85 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=24.1
Q ss_pred cEEEE--eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgV--TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++|+| -|-.||||++..|+..|...|++|.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 44555 4567899999999999988888884
No 69
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.26 E-value=1.6 Score=35.81 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred CCCCCcEEEEeCC--CCCcHHHHHHHHH
Q 022062 128 SRFSGVLVGVTGS--VGKSTTKSMIALA 153 (303)
Q Consensus 128 p~~~~~vIgVTGT--nGKTTt~~ml~~i 153 (303)
+..+..+|+|+|. .||||++.+|+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3455678999996 5899999988764
No 70
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.71 E-value=3.1 Score=34.30 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=26.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+++++|+|. .||||+...|...|...++++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 678999998 4899999998888877787763
No 71
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=72.64 E-value=2.6 Score=38.79 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.++|+|++. .||||++..++..|...|.+|.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 35789999864 5799999999999988888884
No 72
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=72.60 E-value=1.5 Score=40.44 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=25.9
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+++|+|++. .||||++.-|+..|...|++|.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVL 34 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVL 34 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 467887754 6899999999999988899884
No 73
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=72.52 E-value=1.4 Score=36.35 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=17.9
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+|+|.+ ||||++.+|+. +
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C
Confidence 579999875 89999999988 5
No 74
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.85 E-value=2.2 Score=34.02 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.+|++||. .||||++.+|+.-| |++++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 4788999997 68999999999988 45553
No 75
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=70.93 E-value=2.4 Score=33.57 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=21.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|.+|.|+|- .||||++.+|++.| ++..+
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l---~~~~i 30 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKEL---KYPII 30 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHH---CCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCeee
Confidence 357899997 57999999999888 45543
No 76
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.29 E-value=2.7 Score=34.51 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=24.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
+++++|+|.+ ||||+..+|...+...|+++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~ 33 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRV 33 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCce
Confidence 4689999975 79999999999998777665
No 77
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=69.41 E-value=2.6 Score=37.79 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 130 FSGVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 130 ~~~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
.+..+|||+|-| ||||+..+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446799999986 59999999999985
No 78
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.18 E-value=4.7 Score=32.64 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=26.6
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+|.++|- .||||....|+..|...|.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4568899987 6799999999999987787763
No 79
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.33 E-value=2.8 Score=35.03 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=22.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-.+||+||- +||||++.++++.| |..++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g~~vi 41 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---GAHVV 41 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCEEE
Confidence 468999997 69999999999876 55553
No 80
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=68.14 E-value=2.9 Score=34.32 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+|+|||. .||||++.+|+..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 8999997 59999999999987
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.79 E-value=4.7 Score=36.26 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=25.6
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+|+|.|-| ||||+...|+.++...+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35678887776 699999999999987777763
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.07 E-value=4.6 Score=36.25 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..++++.|-| ||||+...|+..+...+.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4578888876 799999999999987777763
No 83
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.85 E-value=2.8 Score=34.65 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=17.5
Q ss_pred cEEEEeCCC--CCcHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIAL 152 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~ 152 (303)
.+|++||-+ ||||+..+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 579999985 89999999987
No 84
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.64 E-value=2.9 Score=34.21 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|+++|-| ||||+..+|...+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999987 7999999999886
No 85
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.53 E-value=4.2 Score=32.48 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCCcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 129 RFSGVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 129 ~~~~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+.+..+|+++|- .||||+..+|+..+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 345678999998 57999999999887
No 86
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=65.27 E-value=17 Score=32.40 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+++|- .||||++..|+..+...|.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 457888775 4799999999999988888874
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.12 E-value=5.1 Score=32.97 Aligned_cols=30 Identities=33% Similarity=0.342 Sum_probs=24.6
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCC
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~ 160 (303)
+..+|+|+|- .||||+..+|+..|...|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 3578999997 57999999999999765654
No 88
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.47 E-value=3.5 Score=34.83 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHH-HHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIA-LAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~-~iL 154 (303)
..+|+++|-| ||||+..+|. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999997 6999999999 776
No 89
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=64.46 E-value=12 Score=33.77 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCCCcEEEE----eCCCCCcHHHHHHHHHHHhCCCCeEEecC
Q 022062 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQSYG 166 (303)
Q Consensus 129 ~~~~~vIgV----TGTnGKTTt~~ml~~iL~~~g~~~~~t~g 166 (303)
+.+.|||.| .|-.|||-++.+|++.|+..+. .+-+.|
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~~-~ilsRG 73 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKRV-CILSRG 73 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSCE-EEEECC
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcCc-eEEeec
Confidence 345789988 7999999999999999965432 233444
No 90
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=64.43 E-value=3.6 Score=35.15 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+..||+||. .||||++.+++. + |..++
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vi 37 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLV 37 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 34788999997 689999988876 4 66654
No 91
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.37 E-value=6.7 Score=35.68 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=26.3
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+..+|++.|-| ||||+...|+..+...+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 35678888866 699999999999988888773
No 92
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=64.33 E-value=3.9 Score=34.07 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.1
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+++|.+ ||||++.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999985 5999999999877
No 93
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=63.95 E-value=5.6 Score=36.72 Aligned_cols=108 Identities=24% Similarity=0.249 Sum_probs=66.4
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhCCCCeEEe-cCC---CcCccchhhH-------------H-hcccCCCCEEEE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVFQS-YGN---WNNRVGVALS-------------L-IGIDRAVDIAVL 190 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~g~~~~~t-~g~---~n~~~g~p~~-------------l-~~~~~~~~~~V~ 190 (303)
.+.|.|+|| .|||+|+..|.+.|++.|+++..- .|. .-...+.|.. + ..+.++.|+.++
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d~vlV 231 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILHI 231 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCCEEEE
Confidence 568999998 599999999999999999997431 110 0011122211 1 124557899999
Q ss_pred Eec--CCChh--hHHHhhcccCcc-EEEEcCCChhhhhcc-----CCHHHHHHHHHHHh
Q 022062 191 EMG--MSGKG--EILELARMARPE-IRVVLNVGDSHLESL-----GSLEDVARAKGEIF 239 (303)
Q Consensus 191 E~~--~s~~~--~~~~l~~~~~p~-iaViTNi~~dHld~~-----gt~e~~~~aK~~l~ 239 (303)
|-. ..++. ....+....+|+ +.+....++-|++.| +++++....-..+.
T Consensus 232 EGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~ 290 (349)
T 2obn_A 232 EGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVA 290 (349)
T ss_dssp CCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHH
T ss_pred eCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHH
Confidence 963 22221 012233446888 666666777676444 46777776666654
No 94
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=63.72 E-value=4.1 Score=34.01 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 141 VGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 141 nGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
.||||-+.+|++-|++.|+++..+.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6999999999999999999986553
No 95
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.24 E-value=4.4 Score=36.54 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 130 FSGVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 130 ~~~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
.+..+|||.|.| ||||+..+|..++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 346799999987 8999999999999643
No 96
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=62.74 E-value=4.7 Score=33.25 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+..+|+|+|-+ ||||+..+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999976 6999999999988
No 97
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=62.51 E-value=3.7 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|.++|. .||||++.+|++.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 69999999999988
No 98
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=62.01 E-value=7.3 Score=33.68 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=25.3
Q ss_pred CCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCC
Q 022062 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (303)
Q Consensus 129 ~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~ 160 (303)
..+...|.+.|-. ||||.+..|++.|...|++
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3345678888864 7999999999999988888
No 99
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=61.74 E-value=7.1 Score=36.06 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|++.|-| ||||+...|+.++...+.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 4578888876 899999999999987777763
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.62 E-value=4.5 Score=33.61 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEeCCC--CCcHHHHHHHHHHHhCC
Q 022062 134 LVGVTGSV--GKSTTKSMIALALESLG 158 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL~~~g 158 (303)
+++++|-| ||||+..+|+..++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 46777766 59999999999997656
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=59.72 E-value=5.1 Score=32.81 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEeCCCC--CcHHHHHHHHHH
Q 022062 134 LVGVTGSVG--KSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTnG--KTTt~~ml~~iL 154 (303)
.++++|-|| |||+..+|..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 588999987 999999999998
No 102
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.36 E-value=17 Score=33.05 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 129 ~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+.++|+|+|. .||||+..-|+..|...|.++
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV 110 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCce
Confidence 345678999986 479999999988887778776
No 103
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=59.23 E-value=8 Score=37.49 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|.|-| ||||+..+|+.++...+.++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 4578888877 799999999999987777774
No 104
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.95 E-value=3.9 Score=32.50 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.0
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+++|.+ ||||+..+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899875 7999999999887
No 105
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.74 E-value=8.4 Score=34.26 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|+|- .||||++..|+..+...+.++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 568888885 5799999999999988888873
No 106
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=58.68 E-value=10 Score=32.08 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=26.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeEEe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~~t 164 (303)
...|.+.|-. ||||.+.+|++-|...|+++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4578888864 69999999999998888887544
No 107
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=58.54 E-value=5.2 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=17.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+.+|.++|. .||||.+.+|++-|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999996 68999999998876
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=58.29 E-value=3.5 Score=33.68 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.3
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
++++++|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888877 59999999999884
No 109
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.28 E-value=9.2 Score=36.18 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhC-CCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESL-GVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~-g~~~~ 162 (303)
.++|+|+|- .|||||+.-|+..|... |+++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 457777754 58999999999999888 88874
No 110
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.23 E-value=6.2 Score=31.60 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+++|+++|. .||||++.+|++-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999997 58999999999877
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.89 E-value=9.1 Score=33.43 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=19.4
Q ss_pred cEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022062 133 VLVGVTGSVGKSTTKSMIALALESLGV 159 (303)
Q Consensus 133 ~vIgVTGTnGKTTt~~ml~~iL~~~g~ 159 (303)
-+.|=+|| |||+++..+++.+...+.
T Consensus 71 ll~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 71 SFTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EEECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 34555555 899999999999966544
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=57.86 E-value=9.4 Score=36.02 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~ 159 (303)
.=++|+..+..+...+....-+.|-.|| |||++...+...|...+.
T Consensus 29 ~Q~~av~~~~~~i~~~~~~~li~G~aGT-GKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKKHHVTINGPAGT-GATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECCTTS-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCCC-CHHHHHHHHHHHHHhcCC
Confidence 4456666666544432222334444454 899998888877777776
No 113
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=57.81 E-value=6.5 Score=35.51 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 137 VTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
=-|-.||||++..++..|.+.|++|.
T Consensus 26 gkGGvGKTTva~~LA~~lA~~G~rVl 51 (329)
T 2woo_A 26 GKGGVGKTTTSCSLAIQMSKVRSSVL 51 (329)
T ss_dssp CSSSSSHHHHHHHHHHHHHTSSSCEE
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 33678999999999999988899985
No 114
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.64 E-value=4.3 Score=33.14 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|+++|-+ ||||+..+|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999986 7999999998877
No 115
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=57.17 E-value=10 Score=32.14 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=22.9
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHHhCCC-CeE
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALESLGV-NVF 162 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~~~g~-~~~ 162 (303)
..|.+.|.. ||||.+.+|++.|+..|+ .+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~ 36 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce
Confidence 456666654 599999999999988887 543
No 116
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=57.02 E-value=8.7 Score=31.27 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.1
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|.|+|. .||||.+..|++-|...| ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 57888885 799999999999995555 553
No 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.40 E-value=7.1 Score=31.65 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALA 153 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~i 153 (303)
+.+.|++||.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999985 699999999887
No 118
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.17 E-value=6.6 Score=30.92 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|+++|. .||||.+.+|++.| +..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 5788886 69999999999988 45543
No 119
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=55.87 E-value=31 Score=31.06 Aligned_cols=146 Identities=13% Similarity=0.175 Sum_probs=81.6
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhh--HH-hcccCCCC
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL--SL-IGIDRAVD 186 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~--~l-~~~~~~~~ 186 (303)
.....|..|.. .+.. ....+|.+-| ..||+|+...|.+-|...|++|..+..........++ .. -.++..-+
T Consensus 68 ~lq~~L~~lQ~~~~~~--~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G~ 145 (304)
T 3czq_A 68 KLQIELVKVQFWMQAT--GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGE 145 (304)
T ss_dssp HHHHHHHHHHHHHHHH--CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTTC
T ss_pred HHHHHHHHHHHHHHHc--CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCCe
Confidence 34444555554 3322 2244666666 6899999999999998888888654322111111111 11 12344556
Q ss_pred EEEEEecCCChh-------------------hHHH----hhcccCccEEEEcCCChhh-hhcc-----------------
Q 022062 187 IAVLEMGMSGKG-------------------EILE----LARMARPEIRVVLNVGDSH-LESL----------------- 225 (303)
Q Consensus 187 ~~V~E~~~s~~~-------------------~~~~----l~~~~~p~iaViTNi~~dH-ld~~----------------- 225 (303)
++|+-=|..+.. ++.+ +...-.|++-++.+|+.+- +..+
T Consensus 146 IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D 225 (304)
T 3czq_A 146 FVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMD 225 (304)
T ss_dssp EEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHH
T ss_pred EEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHH
Confidence 666654422211 0111 1101147788888888641 1111
Q ss_pred ----CCHHHHHHHHHHHhhcC--CCCCEEEEeCCChhhhhh
Q 022062 226 ----GSLEDVARAKGEIFQES--KLGDVCVLNADDPLVANL 260 (303)
Q Consensus 226 ----gt~e~~~~aK~~l~~~~--~~~g~~Vin~Dd~~~~~~ 260 (303)
.-.+.|.+++.+++... ....+.||+++|+...++
T Consensus 226 ~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl 266 (304)
T 3czq_A 226 IAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRI 266 (304)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHH
Confidence 22477888888888653 344699999999875443
No 120
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.48 E-value=3.5 Score=34.09 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|+|+|. .||||++.+|+..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 568999995 67999999888765
No 121
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=55.17 E-value=3.3 Score=34.84 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 138 TGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 138 TGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.|-.||||++.-|+..|...|++|.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vl 32 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIY 32 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4556799999999999988888873
No 122
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=54.94 E-value=7.7 Score=35.55 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=23.8
Q ss_pred cEEEE--eCCCCCcHHHHHHHHHHH--hCCCCeE
Q 022062 133 VLVGV--TGSVGKSTTKSMIALALE--SLGVNVF 162 (303)
Q Consensus 133 ~vIgV--TGTnGKTTt~~ml~~iL~--~~g~~~~ 162 (303)
+++.+ .|-.||||++..++..|. ..|.+|.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vl 52 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFL 52 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 44444 467889999999999997 7888884
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=53.87 E-value=5.7 Score=31.94 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=18.6
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|+++|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 35888886 78999999999987
No 124
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.60 E-value=12 Score=32.34 Aligned_cols=90 Identities=16% Similarity=0.053 Sum_probs=49.3
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE-EecCCCc------Cccchhh------H-HhcccCCCCEEEEEecCC
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF-QSYGNWN------NRVGVAL------S-LIGIDRAVDIAVLEMGMS 195 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~-~t~g~~n------~~~g~p~------~-l~~~~~~~~~~V~E~~~s 195 (303)
+.+|.++|- .||||.+..|+.-|...|+.++ .+...+. ...+... . +...-.. ..+|++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~~ 82 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTNY 82 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCcc
Confidence 456777764 5899999999999977887765 2211110 0011111 0 1111233 7888886433
Q ss_pred ChhhHHHhhc----ccCccEEEEcCCChhhh
Q 022062 196 GKGEILELAR----MARPEIRVVLNVGDSHL 222 (303)
Q Consensus 196 ~~~~~~~l~~----~~~p~iaViTNi~~dHl 222 (303)
.......+.. .-.|++.|+.....+-+
T Consensus 83 ~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~ 113 (260)
T 3a4m_A 83 YNSMRRDLINIAKKYNKNYAIIYLKASLDVL 113 (260)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEEECCHHHH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEeCCHHHH
Confidence 3333332322 12468888877766543
No 125
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.33 E-value=7.7 Score=31.78 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+++|+++|-+ ||||++..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999975 7999999999888
No 126
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=53.20 E-value=11 Score=30.14 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.4
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCC
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLG 158 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g 158 (303)
.+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46888886 589999999999996555
No 127
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=52.20 E-value=8 Score=35.22 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.2
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 137 VTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
-.|-.||||++.-++..|...|.+|.
T Consensus 23 gkGGvGKTt~a~~lA~~la~~g~~vl 48 (334)
T 3iqw_A 23 GKGGVGKTTTSCSLAIQLAKVRRSVL 48 (334)
T ss_dssp CSTTSSHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 34778999999999999988888874
No 128
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=51.74 E-value=11 Score=34.15 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 129 ~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..+..+|+++|-+ ||||+...|...+...+.++
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3457889999986 79999999999997777765
No 129
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.91 E-value=16 Score=31.17 Aligned_cols=39 Identities=13% Similarity=-0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+.+++.-+..+..+...|+++|-. ||||.+.+|++-+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45556665332223345689999974 7999999998776
No 130
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=50.76 E-value=8.6 Score=31.40 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.0
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.++.+|+|+|. .||||.+.+|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44678999997 47999999888765
No 131
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=50.65 E-value=10 Score=32.11 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+..+|+|+|.+ ||||+..+|+..|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999975 7999999999876
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=50.60 E-value=21 Score=28.39 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCC-CCCcEEEEeCCC--CCcHHHHHHHHHHH-hCCCCe
Q 022062 114 TLNSLVNMACYARNSR-FSGVLVGVTGSV--GKSTTKSMIALALE-SLGVNV 161 (303)
Q Consensus 114 ~~~al~~la~~~~~p~-~~~~vIgVTGTn--GKTTt~~ml~~iL~-~~g~~~ 161 (303)
-.+++..+-.+...-. .+...+++.|-+ ||||+...++..+. ..|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 3445544443443201 124678999865 69999999999986 556554
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.30 E-value=10 Score=31.09 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+++|.++|-+ ||||++..|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4577777765 8999999999988
No 134
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.27 E-value=5.6 Score=33.24 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 022062 134 LVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL 154 (303)
++|..|| ||||.+.+|++-|
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l 29 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKY 29 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHh
Confidence 4455555 8999999999988
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.24 E-value=9.1 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.8
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|+++|- .||||++.+|++-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457777775 58999999999877
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=49.63 E-value=12 Score=30.63 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=21.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|.++|. .||||.+.+|++-| +..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 49 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIPQI 49 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 347888886 58999999999887 44543
No 137
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=49.41 E-value=15 Score=35.66 Aligned_cols=34 Identities=38% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCCcEEEEeCC------CCCcHHHHHHHHHHHhCCCCeE
Q 022062 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVTGT------nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+.++|.||.+ -|||||+.=|++.|.+.|.++.
T Consensus 54 ~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVL 93 (557)
T 3pzx_A 54 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVM 93 (557)
T ss_dssp SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEE
Confidence 345789999987 4799999999999998998874
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.32 E-value=7.5 Score=32.32 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+..+|+++|-+ ||||+..+|...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999987 6999999998877
No 139
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=49.13 E-value=17 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhC----CCCeEEe
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESL----GVNVFQS 164 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~----g~~~~~t 164 (303)
+...|.+.|-. ||||.+..|++-|... |+++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 35678888865 5999999999999877 8887544
No 140
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=48.43 E-value=12 Score=32.10 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHh-CCCCeEE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALES-LGVNVFQ 163 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~-~g~~~~~ 163 (303)
+...|.+.|.. ||||.+..|++.|.. .|+++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 35688888864 699999999999988 8888755
No 141
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=48.03 E-value=15 Score=33.18 Aligned_cols=32 Identities=38% Similarity=0.446 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCCC--CcHHHHHHHHHHHhCCCCe
Q 022062 130 FSGVLVGVTGSVG--KSTTKSMIALALESLGVNV 161 (303)
Q Consensus 130 ~~~~vIgVTGTnG--KTTt~~ml~~iL~~~g~~~ 161 (303)
.+..+++|+|.+| |||+..+|..++...+.++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 3467999999986 9999999999997766665
No 142
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.80 E-value=14 Score=30.53 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.6
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHH-hCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALE-SLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~-~~g~~~~ 162 (303)
..+|.++|. .||||.+.+|+..|. ..|+++.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEE
Confidence 467888886 689999999999996 5665553
No 143
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.60 E-value=11 Score=31.26 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+|+|.. ||||++.+|+. | |+.++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l---g~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L---GINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 3589999974 89999999987 4 55543
No 144
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=47.46 E-value=10 Score=33.24 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.+|+|||.. ||||++.+|+. + |+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-l---g~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-L---GAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-H---TCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 5689999974 89999999984 3 55543
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.15 E-value=9.3 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHhhcCC-------CCCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSR-------FSGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 113 d~~~al~~la~~~~~p~-------~~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+..+.+..+..++.+|. ...+-+.+.|-+ ||||++..++..+
T Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 19 EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp HHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 55666666665443321 012346777764 7999999999877
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=46.57 E-value=50 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=17.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.|=+|| |||+++..|+......+.+.+
T Consensus 29 l~G~~Gt-GKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 29 LYGAPGT-GRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp EESSTTS-SHHHHHHHHHHSSTTTTSCCE
T ss_pred EECCCCC-CHHHHHHHHHHhCCccCCCEE
Confidence 3344443 799999988876644444433
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=46.13 E-value=32 Score=26.90 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
+...+++.|.+ ||||+..++...+...|.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~ 68 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAA 68 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 35678888875 799999999999976665554
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.09 E-value=9.8 Score=31.44 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||+..+|..++.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999987 79999999999883
No 149
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=46.05 E-value=18 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
+...|.+.|- .||||.+.+|++.|.. +..+..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3567888887 4699999999999976 7777544
No 150
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=45.81 E-value=10 Score=32.89 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=18.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+.+||+||. +||||++.++..-+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999996 68999988886653
No 151
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=45.71 E-value=15 Score=33.47 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred EeCCCCCcHHHHHHHHHHH--hCCCCeE
Q 022062 137 VTGSVGKSTTKSMIALALE--SLGVNVF 162 (303)
Q Consensus 137 VTGTnGKTTt~~ml~~iL~--~~g~~~~ 162 (303)
=-|-.||||++.-++..|. +.|++|.
T Consensus 25 gKGGvGKTTvaanLA~~lA~~~~G~rVL 52 (354)
T 2woj_A 25 GKGGVGKTTSSCSIAIQMALSQPNKQFL 52 (354)
T ss_dssp ESTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 3477899999999999997 7888884
No 152
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=45.55 E-value=17 Score=34.39 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|+++|- .||||++..|+..|...|.++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 457777765 4799999999999987888873
No 153
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=45.38 E-value=11 Score=32.40 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|+|+|-+ ||||+..+|+.-|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999976 6999999999666
No 154
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=45.35 E-value=13 Score=32.37 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=22.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
..+++|+|-| ||||+..+|...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 5689999986 8999999999998653
No 155
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=45.09 E-value=17 Score=35.05 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=25.1
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+.++|+|+|. .||||++.-|+..|...|.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3568888886 5799999999999988888873
No 156
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=44.46 E-value=48 Score=26.66 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=23.6
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+.++|.. |||+.+..++..+...+.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 567788874 899999999998876666653
No 157
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=44.40 E-value=23 Score=35.24 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=28.3
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEe
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t 164 (303)
.+..+|.+||. .||||++..|++.|.+.|.++..+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34568999986 789999999999998778776543
No 158
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=44.37 E-value=24 Score=34.33 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=25.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+|.+||. .||||++.+|++.|...|.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~ 404 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVT 404 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 467888877 5799999999999977776653
No 159
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=44.26 E-value=25 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=20.9
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.+++.++|. .||||..--++.=+...|.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34679999999 5555544444444445788873
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=43.96 E-value=19 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~~ 162 (303)
..+++|+|-| ||||+...++..+...+.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4689999986 599999998866655565663
No 161
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=43.66 E-value=12 Score=31.31 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.7
Q ss_pred EEEEeCC--CCCcHHHHHHHHHHHhCCCCeEEec
Q 022062 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQSY 165 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~~t~ 165 (303)
.|.+-|- .||||.+.+|++-| ..|+++..+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEee
Confidence 4555453 58999999999999 5688876543
No 162
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.60 E-value=9.3 Score=31.04 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
...|+++|- .||||.+.+|++-| .|+++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~ 33 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTI 33 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCce
Confidence 357888886 59999999999877 24444
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=43.26 E-value=14 Score=29.82 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.4
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|+|+|. .||||.+.+|++.|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 4677776 57999999999988
No 164
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=43.15 E-value=46 Score=28.15 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc--cCCCCEEEEEecCCChhhHHHhhccc
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILELARMA 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~--~~~~~~~V~E~~~s~~~~~~~l~~~~ 207 (303)
.+.+++-|||.+|-+-.-.-++..|-+.|.++.....+... . ....+..+ ..+.++.+++++.++..++.++...+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQ-G-AEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSS-H-HHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcch-h-HHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 34578999999853344454555554788887543322111 1 01111111 22467778888878877666544333
Q ss_pred -----CccEEEEcCCC
Q 022062 208 -----RPEIRVVLNVG 218 (303)
Q Consensus 208 -----~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 96 ~~~~g~id~l-i~nAg 110 (267)
T 3gdg_A 96 VADFGQIDAF-IANAG 110 (267)
T ss_dssp HHHTSCCSEE-EECCC
T ss_pred HHHcCCCCEE-EECCC
Confidence 66765 45554
No 165
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=43.13 E-value=83 Score=26.48 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchh-hHHhcccCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA-LSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p-~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
.+.+++-|||..|-+-+-.-++..|.+.|.++....-+ ...... ..+.......++.++.++.++..++.++...+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG--ERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS--GGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc--hHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999885445555555555889887543221 111111 11111112235667777777776666554322
Q ss_pred ----CccEEEEcCCCh
Q 022062 208 ----RPEIRVVLNVGD 219 (303)
Q Consensus 208 ----~p~iaViTNi~~ 219 (303)
++|+ +|-|.+.
T Consensus 83 ~~~g~id~-li~~Ag~ 97 (266)
T 3oig_A 83 EQVGVIHG-IAHCIAF 97 (266)
T ss_dssp HHHSCCCE-EEECCCC
T ss_pred HHhCCeeE-EEEcccc
Confidence 5675 4555543
No 166
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=42.98 E-value=11 Score=31.04 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=18.3
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
++++|.|-| ||||+..+|...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467777766 8999999999887
No 167
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=42.30 E-value=19 Score=34.83 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCcEEEEeCC--CCCcHHHHHHHHHHHh
Q 022062 131 SGVLVGVTGS--VGKSTTKSMIALALES 156 (303)
Q Consensus 131 ~~~vIgVTGT--nGKTTt~~ml~~iL~~ 156 (303)
+..+|.+||- +||||++..|++-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4568999995 6999999999999954
No 168
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=41.94 E-value=31 Score=30.70 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=28.6
Q ss_pred CCcEEEEeC----CCCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTG----SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTG----TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.++-|-||| +-||.-|++-|..+|++.|+++
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~V 56 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHV 56 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcc
Confidence 478899999 7899999999999999999997
No 169
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.80 E-value=12 Score=29.72 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=18.1
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45777775 58999999999888
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=41.67 E-value=16 Score=30.29 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.6
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+..|.++|- .||||.+.+|++-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456777775 48999999999988
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=41.66 E-value=15 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.4
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+|+++|. .||||.+..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888887 48999999998877
No 172
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=40.89 E-value=18 Score=33.16 Aligned_cols=29 Identities=38% Similarity=0.298 Sum_probs=22.7
Q ss_pred cEEEEeCCCC--CcHHHHHHHHHHHhC-CCCe
Q 022062 133 VLVGVTGSVG--KSTTKSMIALALESL-GVNV 161 (303)
Q Consensus 133 ~vIgVTGTnG--KTTt~~ml~~iL~~~-g~~~ 161 (303)
.+|+|+|-+| |||+...+...+... +..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 4899999875 999999999888654 4333
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=40.65 E-value=6.6 Score=32.39 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.1
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.++|.++|- .||||....|...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445666664 48999999998877
No 174
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=40.49 E-value=21 Score=31.59 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHH-HHHHHHHH
Q 022062 134 LVGVTGSVGKSTTK-SMIALALE 155 (303)
Q Consensus 134 vIgVTGTnGKTTt~-~ml~~iL~ 155 (303)
+|||| |+|||++. ..|..-++
T Consensus 161 ~IaIS-T~Gksp~lA~~ir~~ie 182 (274)
T 1kyq_A 161 QILIS-TNGLSPRFGALVRDEIR 182 (274)
T ss_dssp EEEEE-ESSSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCcHHHHHHHHHHH
Confidence 89999 99998764 55665553
No 175
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=40.37 E-value=14 Score=29.72 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.++++|.|-+ ||||+..+|...+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999976 6999999998876
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.21 E-value=15 Score=29.56 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.8
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+|+|+|. .||||.+.+|++-|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888886 48999999999988
No 177
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=39.83 E-value=53 Score=29.68 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..+|+++|.+ ||||+...|...+...+.++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v 105 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKL 105 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 6799999996 69999999998887666654
No 178
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.33 E-value=13 Score=29.39 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.2
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+|.++|- .||||++..|++-|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 46777775 68999999999887
No 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.91 E-value=15 Score=29.46 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=16.7
Q ss_pred cEEEEeCCC--CCcHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIAL 152 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~ 152 (303)
.+|+++|-| ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 468888875 79999999976
No 180
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.69 E-value=7.9 Score=31.76 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 134 LVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
+.|..| .||||.+.+|+..|...|+++
T Consensus 5 i~G~~G-sGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 5 IEGVDG-AGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEE-EEHHHHHHHHHHHHHEEEEEE
T ss_pred EEcCCC-CCHHHHHHHHHHHHHhcCCeE
Confidence 344444 489999999999997666554
No 181
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=38.66 E-value=1.1e+02 Score=24.27 Aligned_cols=71 Identities=11% Similarity=-0.059 Sum_probs=41.7
Q ss_pred hhhcHHHhHhcCCceEEEEcccCCC-------------CCceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCC
Q 022062 74 AHEFISPELYGKGCVGVIGNQVCNN-------------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (303)
Q Consensus 74 g~~~i~~A~~~~GA~~vv~~~~~~~-------------~~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGT 140 (303)
|-.-+..++++.-|..||...+.+. .++|++.|+ +- .+|+...+. ....-+++|| .
T Consensus 54 G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~-----sk----~eLG~a~Gk-~~~vs~vaI~-~ 122 (144)
T 2jnb_A 54 GANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVR-----SK----QALGRACGV-SRPVIACSVT-I 122 (144)
T ss_dssp CHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEES-----CS----HHHHHHHTC-SSCCSEEEEE-C
T ss_pred cHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEC-----CH----HHHHHHhCC-CCceEEEEEE-e
Confidence 4444556666233555554432211 178998887 43 345555554 3334469999 5
Q ss_pred CCCcHHHHHHHHHHH
Q 022062 141 VGKSTTKSMIALALE 155 (303)
Q Consensus 141 nGKTTt~~ml~~iL~ 155 (303)
.|.+-....+.++.+
T Consensus 123 ~~~s~i~~~~~~~~~ 137 (144)
T 2jnb_A 123 KEGSQLKQQIQSIQQ 137 (144)
T ss_dssp CTTCTTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 677777777777764
No 182
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.40 E-value=19 Score=28.72 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=20.7
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+.|.++|- .||||++..|++-| |+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 456777774 68999999999888 55543
No 183
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=38.35 E-value=87 Score=26.34 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
.+.+++-|||..|..-=..+..+++ +.|.+++..--+. ........-+....+.++.+++++.++..++.++...+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHE-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCH-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCH-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 3457899999987544455555555 7788875432110 00000011111122357888888888877766654333
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 98 ~~g~id~l-i~~Ag 110 (266)
T 3o38_A 98 KAGRLDVL-VNNAG 110 (266)
T ss_dssp HHSCCCEE-EECCC
T ss_pred HhCCCcEE-EECCC
Confidence 67765 44554
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.15 E-value=18 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=18.2
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..|+++|-. ||||.+.+|++-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888864 7999999999877
No 185
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=37.90 E-value=30 Score=33.35 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCCcEEEEeCC------CCCcHHHHHHHHHHHhCCCCeEE
Q 022062 130 FSGVLVGVTGS------VGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 130 ~~~~vIgVTGT------nGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
.+.+.|-||+- -|||||+-=|.+.|...|.+++.
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 45788999998 59999999999999999988743
No 186
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.44 E-value=14 Score=43.74 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=44.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 100 ~~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+++..+ |..+-+.++++..+.|+-.+-.|||.|| ||+|.+.+.+.|. |+++
T Consensus 1622 ~m~LVlF~-----daleHv~RI~RIL~qp~GhaLLVGvgGS-GkqSLtrLAa~i~---~~~v 1674 (3245)
T 3vkg_A 1622 DVPLVLFN-----EVLDHILRIDRVFRQPQGHALLIGVSGG-GKSVLSRFVAWMN---GLSI 1674 (3245)
T ss_dssp --CCCCCH-----HHHHHHHHHHHHHTSTTCCEEEEESTTS-SHHHHHHHHHHHT---TCEE
T ss_pred CceEEeHH-----HHHHHHHHHHHHHccCCCCeEEecCCCC-cHHHHHHHHHHHh---CCee
Confidence 35566678 8889999999988899989999999887 9999999999997 5655
No 187
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=37.28 E-value=17 Score=35.50 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=30.2
Q ss_pred eEEEEcCCCcccHHHHHHHHHHHhhc-CCCCCcEEEEeCCCCCcHHHHHHHHHHH
Q 022062 102 GFVQVEGNGNVNTLNSLVNMACYARN-SRFSGVLVGVTGSVGKSTTKSMIALALE 155 (303)
Q Consensus 102 ~~i~V~~~~~~d~~~al~~la~~~~~-p~~~~~vIgVTGTnGKTTt~~ml~~iL~ 155 (303)
|+++..+.|++.|...+.+++..... .....+++.+|-|| ..+.+|-..+.+
T Consensus 24 ~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~--~aa~e~~~rl~~ 76 (647)
T 3lfu_A 24 NLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTN--KAAAEMRHRIGQ 76 (647)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSH--HHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccH--HHHHHHHHHHHH
Confidence 45555566666777777777763322 12234677777776 445555555553
No 188
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.82 E-value=20 Score=28.43 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=18.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+.|.++|- .||||.+..|++-|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456788886 58999999999887
No 189
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=36.70 E-value=1.2e+02 Score=29.12 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.0
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEeC--CCCCcHHHHHHHHHHHhCCCCeEE
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVFQ 163 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~~~ 163 (303)
.....|..|-. .+.+ .....+|.+-| +.||+|+...|.+-|...|.+|..
T Consensus 24 ~l~~~L~~lQ~~~~~~-~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a 76 (500)
T 3czp_A 24 ELREALLEAQFELKQQ-ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQS 76 (500)
T ss_dssp HHHHHHHHHHHHHHHH-CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhc-CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 34445555555 3331 12234556655 789999999999999888888764
No 190
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=36.37 E-value=22 Score=34.52 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=24.2
Q ss_pred cEEEEe--CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVT--GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
+++.++ |-.||||++..++..|.+.|++|.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 444444 558999999999999988999984
No 191
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.27 E-value=23 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=18.9
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|+|+|- .||||++.+| +..|+.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 36778886 4799999888 45576654
No 192
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=35.82 E-value=1.7e+02 Score=24.87 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=47.7
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
+.+.+++-|||.+| -+-.-++..|.+.|.+++..--+ .. ........+ +.++.+++++.++..++.++...+
T Consensus 13 ~l~gk~vlVTGas~--gIG~~~a~~L~~~G~~V~~~~r~--~~-~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 13 SFAQRTVVITGANS--GLGAVTARELARRGATVIMAVRD--TR-KGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEEESC--HH-HHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEECC--HH-HHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 45568999999885 55555566665788887543221 10 000011111 346777888878887777765434
Q ss_pred CccEEEEcCCC
Q 022062 208 RPEIRVVLNVG 218 (303)
Q Consensus 208 ~p~iaViTNi~ 218 (303)
++|+. |-|.+
T Consensus 86 ~iD~l-v~nAg 95 (291)
T 3rd5_A 86 GADVL-INNAG 95 (291)
T ss_dssp CEEEE-EECCC
T ss_pred CCCEE-EECCc
Confidence 56654 55554
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=35.01 E-value=37 Score=28.90 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+..++-+||. .||||...-++.-+...|.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 34678999999 5666655544444446777874
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=35.00 E-value=23 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.+|+|+|- .||||++.-|+..|...|+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 46777664 5899999999999987788874
No 195
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.93 E-value=16 Score=29.11 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.0
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+.+|+|-| ||||+...|..+|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378899987 5999999999988
No 196
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=34.92 E-value=19 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|++.|-| ||||+..+|+..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678888864 7999999887764
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.79 E-value=22 Score=28.33 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.4
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
..+|.++|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 346777775 58999999999877
No 198
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=33.63 E-value=23 Score=28.31 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
+..++++.|-| ||||...+|..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999987 5999999999988
No 199
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=33.26 E-value=25 Score=32.31 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=21.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
..+|+|+|-+ ||||+..+|...+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 4589999976 5999999999998654
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=33.02 E-value=66 Score=28.12 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 117 SLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 117 al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
++..+-.....|......+.++|- .||||++..++..+...+.++.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 444333333343323344666664 3799999999988866666653
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=32.15 E-value=28 Score=29.39 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|+|.|-| ||||...+|++-|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999987 6999999999766
No 202
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.77 E-value=35 Score=27.76 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=18.4
Q ss_pred cEEEEeCC--CCCcHHH-HHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTK-SMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~-~ml~~iL~~~g~~~~ 162 (303)
.++.+||. .||||.. .++.... ..|.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~ 35 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK-LGKKKVA 35 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 47788888 5677776 3334433 5677763
No 203
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=31.05 E-value=30 Score=35.47 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=26.6
Q ss_pred CcEEEEeCC---CCCcHHHHHHHHHHHhC-----CCCeE
Q 022062 132 GVLVGVTGS---VGKSTTKSMIALALESL-----GVNVF 162 (303)
Q Consensus 132 ~~vIgVTGT---nGKTTt~~ml~~iL~~~-----g~~~~ 162 (303)
++.|-|+|| .|||+++.-|.++|.+. |++|.
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~ 72 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLL 72 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEE
Confidence 577889988 69999999999999888 88773
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=31.04 E-value=60 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.012 Sum_probs=23.7
Q ss_pred CCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 128 SRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 128 p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
|......+.++|-+ |||+++..++..+...+.+.
T Consensus 43 ~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 43 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 33334467777765 69999999999995544443
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=30.83 E-value=26 Score=31.54 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=15.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 022062 134 LVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL 154 (303)
+.|=+|| |||+++..|+..+
T Consensus 56 l~GppGt-GKT~la~~ia~~~ 75 (363)
T 3hws_A 56 LIGPTGS-GKTLLAETLARLL 75 (363)
T ss_dssp EECCTTS-SHHHHHHHHHHHT
T ss_pred EECCCCC-CHHHHHHHHHHHc
Confidence 3444554 8999999999887
No 206
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=30.31 E-value=25 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=18.4
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
++++++|||-+ ||||....|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999977 5999877766543
No 207
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=30.26 E-value=20 Score=29.48 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.2
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+|+|+|. .||||++.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 36889985 68999999998866
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=29.83 E-value=36 Score=28.43 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhC
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~ 157 (303)
..+++|.|-| ||||...+|+.+ .-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 4589999998 699999999988 543
No 209
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=29.65 E-value=26 Score=30.27 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.1
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+|+++|-+ ||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468888875 7999999999988
No 210
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=29.53 E-value=17 Score=33.68 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCeE
Q 022062 139 GSVGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 139 GTnGKTTt~~ml~~iL~~~g~~~~ 162 (303)
|-.||||++..++..|...|++|.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeE
Confidence 556899999999999988999883
No 211
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.27 E-value=49 Score=28.61 Aligned_cols=31 Identities=35% Similarity=0.305 Sum_probs=24.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhC-CCCeE
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESL-GVNVF 162 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~-g~~~~ 162 (303)
..+++|.|-| ||||....|+..+... |.++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 4688888876 8999999998888655 65663
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=29.26 E-value=21 Score=29.78 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|.|-| ||||+..+|..++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999965 7999999999977
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=29.19 E-value=33 Score=32.10 Aligned_cols=30 Identities=37% Similarity=0.266 Sum_probs=22.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
..+|+|+|-| ||||+...|...+.....++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 4579999976 69999999988884433344
No 214
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=29.04 E-value=1.6e+02 Score=24.09 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=46.7
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc----
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA---- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~---- 207 (303)
++++-|||.+| -+-.-++..|.+.|.++....-+..........+ ....+.++.+++++.+...++.++...+
T Consensus 2 ~k~vlITGas~--gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGASR--GIGEAIARALARDGYALALGARSVDRLEKIAHEL-MQEQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESCSS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-HhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 57899999885 4555555555578888754322100000000011 1123567888888888887776654433
Q ss_pred -CccEEEEcCCCh
Q 022062 208 -RPEIRVVLNVGD 219 (303)
Q Consensus 208 -~p~iaViTNi~~ 219 (303)
++|+. |-|-+.
T Consensus 79 g~id~l-i~~Ag~ 90 (235)
T 3l77_A 79 GDVDVV-VANAGL 90 (235)
T ss_dssp SSCSEE-EECCCC
T ss_pred CCCCEE-EECCcc
Confidence 67764 555554
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=28.92 E-value=34 Score=28.59 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=20.6
Q ss_pred CCCCCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 128 SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 128 p~~~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
|..+.++|+|.|-+ ||||+..+|...+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34566789999977 5999998887765
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=28.73 E-value=27 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=19.8
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
..|.++|. .||||.+.+|++-| +...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---GLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CceEE
Confidence 45666664 68999999999988 45443
No 217
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.51 E-value=31 Score=28.15 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.8
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|+|+|- .||||++.+|++-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3677774 58999999998877
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=28.50 E-value=83 Score=26.16 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHhhcCCC-------CCcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSRF-------SGVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~-------~~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+..+.+..+..+...|.. ..+-|-++|- .|||+++..++.-+
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 556666666655444331 2345677776 57999999998877
No 219
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=28.36 E-value=25 Score=29.64 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
..++.++| -.||||++.-++..|. .|.++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v 44 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKV 44 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeE
Confidence 34555554 5789999999999996 88887
No 220
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=28.24 E-value=30 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=15.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.+-+.|=+|| |||+++..++...
T Consensus 29 ~vll~G~~Gt-GKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGS-PFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTC-CHHHHHGGGCCTT
T ss_pred cEEEECCCCc-cHHHHHHHHHHhC
Confidence 3445566664 8998887776654
No 221
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=28.22 E-value=1.7e+02 Score=24.67 Aligned_cols=86 Identities=16% Similarity=0.052 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccc-hhhHHhcccCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g-~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
.+.+++-|||..| -.-.-++..|.+.|.++...--+. .... ....+.....+.++..++++.++..++.++...+
T Consensus 6 l~~k~~lVTGas~--GIG~aia~~l~~~G~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 6 LSEAVAVVTGGSS--GIGLATVELLLEAGAAVAFCARDG-ERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CTTCEEEEETCSS--HHHHHHHHHHHHTTCEEEEEESCH-HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3457999999875 566666666668888875432210 0000 0011111123445788888888877666544322
Q ss_pred ----CccEEEEcCCCh
Q 022062 208 ----RPEIRVVLNVGD 219 (303)
Q Consensus 208 ----~p~iaViTNi~~ 219 (303)
++|+. |-|-+.
T Consensus 83 ~~~g~id~l-vnnAg~ 97 (265)
T 3lf2_A 83 RTLGCASIL-VNNAGQ 97 (265)
T ss_dssp HHHCSCSEE-EECCCC
T ss_pred HHcCCCCEE-EECCCC
Confidence 66764 555553
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=27.91 E-value=41 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=17.7
Q ss_pred EEEeCCC--CCcHHHHHHHHHHHhCCCCe
Q 022062 135 VGVTGSV--GKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 135 IgVTGTn--GKTTt~~ml~~iL~~~g~~~ 161 (303)
|-++|-. |||+++..++..+...+.+.
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~ 60 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPF 60 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCE
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCe
Confidence 4456643 79999988888774333443
No 223
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=27.59 E-value=34 Score=28.98 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~ 161 (303)
..+|+|+|. +||||++..|+.-| |+++
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~~ 42 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIHF 42 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCcE
Confidence 468999995 67999999999988 4544
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=27.46 E-value=1.3e+02 Score=24.28 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHhCCCCeE
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~~g~~~~ 162 (303)
.++..+..+...+ ..+.+.++|- .|||+++..++..+...+.++.
T Consensus 38 ~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 38 ELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp HHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4555555533332 3456778875 4799999999998877766653
No 225
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=27.35 E-value=68 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=21.6
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHH--HhCCCCeE
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALAL--ESLGVNVF 162 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL--~~~g~~~~ 162 (303)
..+..+.-+||+-||.-|+.+|..+. ...|.++.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34467899999955555555555544 35677774
No 226
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.28 E-value=40 Score=28.17 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=18.5
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+..|.++|. .||||.+.+|+.-|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346777775 68999999999888
No 227
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.59 E-value=18 Score=42.19 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=43.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHHHHhhcCCCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 101 ~~~i~V~~~~~~d~~~al~~la~~~~~p~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
..++..+ |..+-+.++++..+.|+-.+-.|||.|| ||+|.+.+.+.+. ++++
T Consensus 1586 m~LVlF~-----dai~Hi~RI~Ril~~p~G~~LLvGvgGs-GkqSltrLaa~i~---~~~~ 1637 (2695)
T 4akg_A 1586 VPMVIHE-----SMVDHILRIDRALKQVQGHMMLIGASRT-GKTILTRFVAWLN---GLKI 1637 (2695)
T ss_dssp CCCCCCH-----HHHHHHHHHHHHHHSSSEEEEEECTTTS-CHHHHHHHHHHHT---TCEE
T ss_pred ceeeeHH-----HHHHHHHHHHHHHcCCCCCEEEECCCCC-cHHHHHHHHHHHh---CCee
Confidence 4566677 8888888999988888888889999886 9999999999987 5555
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=26.47 E-value=38 Score=29.05 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=18.8
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.+|+|+|-. ||||++.+|+.-|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888864 8999999999887
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=26.46 E-value=32 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
+..+++|.|-| ||||+..+|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999987 69999999988873
No 230
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=26.21 E-value=38 Score=27.99 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=21.5
Q ss_pred CcEEEEeC--CCCCcHHHHHHHHHHHhCCCCe
Q 022062 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 132 ~~vIgVTG--TnGKTTt~~ml~~iL~~~g~~~ 161 (303)
.++|+|+| -.||||+...|+.-| |++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 35899998 478999999999887 5554
No 231
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=26.10 E-value=38 Score=28.98 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.0
Q ss_pred cEEEEeCC--CCCcHHHHHHHHHH
Q 022062 133 VLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 133 ~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
++|.|+|- .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 45666665 48999999998877
No 232
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=26.08 E-value=55 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=23.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHHHhCC-CCeE
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALALESLG-VNVF 162 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL~~~g-~~~~ 162 (303)
..+|.+||- .||||++..|+..|...| .++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~ 429 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVS 429 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEE
Confidence 457888875 469999999999997656 5543
No 233
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=26.00 E-value=53 Score=29.10 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=27.6
Q ss_pred CCcEEEEeCC----CCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGS----VGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGT----nGKTTt~~ml~~iL~~~g~~~ 161 (303)
+++-|-|||- -||.-+++-|..+|++.|+++
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~V 56 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHV 56 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCee
Confidence 3788999984 599999999999999999987
No 234
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=25.87 E-value=1.5e+02 Score=25.06 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccc-hhhHHhcccCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g-~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
+.+++.|||.+| -+-..++..|.+.|.++....-+. .... ....+.......++.+++++.+...++.++...+
T Consensus 31 ~~k~vlVTGasg--gIG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 31 RDRLALVTGASG--GIGAAVARALVQQGLKVVGCARTV-GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp TTCEEEEESTTS--HHHHHHHHHHHHTTCEEEEEESCH-HHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEECCh-HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999886 444444554547888875432210 0000 0001111111245667788877776665543322
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|.+
T Consensus 108 ~~g~iD~v-i~~Ag 120 (279)
T 1xg5_A 108 QHSGVDIC-INNAG 120 (279)
T ss_dssp HHCCCSEE-EECCC
T ss_pred hCCCCCEE-EECCC
Confidence 57765 44554
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=25.43 E-value=25 Score=31.78 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=17.0
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+.|.++|- .|||+++..++..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 345667775 47999999888765
No 236
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=25.27 E-value=36 Score=28.59 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHH-HhhcCCCCC-cEEEEeCCCCCcHH
Q 022062 118 LVNMAC-YARNSRFSG-VLVGVTGSVGKSTT 146 (303)
Q Consensus 118 l~~la~-~~~~p~~~~-~vIgVTGTnGKTTt 146 (303)
|..+|. +|++|.+++ +.|++++.+|+.++
T Consensus 165 l~~v~~~Wf~k~Pk~m~~si~~~~~~g~~~~ 195 (207)
T 2hly_A 165 MASVAANWFRKSPKQMAASLSVTDRDGKART 195 (207)
T ss_dssp HHHHHHHHCCCTTSCCCSEEEEECTTSCEEE
T ss_pred HHHHHHHHhcCCchhCCCcEEeecCCCCeeE
Confidence 445555 777755555 67999999999664
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=25.05 E-value=55 Score=25.74 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=19.5
Q ss_pred cHHHHHHHHHH-HhhcCCCCCcEEEEeCC--CCCcHHHHHH
Q 022062 113 NTLNSLVNMAC-YARNSRFSGVLVGVTGS--VGKSTTKSMI 150 (303)
Q Consensus 113 d~~~al~~la~-~~~~p~~~~~vIgVTGT--nGKTTt~~ml 150 (303)
...+.+..+.. .-..+..+...|+|.|. .||||....+
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 44444444433 22222344567888886 7999876544
No 238
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=25.04 E-value=26 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.4
Q ss_pred CCCcEEEEeCCC--CCcHHHHHHHHH
Q 022062 130 FSGVLVGVTGSV--GKSTTKSMIALA 153 (303)
Q Consensus 130 ~~~~vIgVTGTn--GKTTt~~ml~~i 153 (303)
.+..+|+|.|-+ ||||...+|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999987 699998888775
No 239
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=25.02 E-value=2.6e+02 Score=23.27 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
+.+++-|||.+| -+-.-++..|.+.|.++...--+ .. ........+ ..+.++.+++++.++..++.++...+
T Consensus 6 ~~k~vlVTGas~--GIG~aia~~l~~~G~~V~~~~r~--~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 6 RNATVAVIGAGD--YIGAEIAKKFAAEGFTVFAGRRN--GE-KLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp CSCEEEEECCSS--HHHHHHHHHHHHTTCEEEEEESS--GG-GGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEeCC--HH-HHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 457899999885 55566666665889887543221 11 100011111 23557788888888887776654433
Q ss_pred --CccEEEEcCCC
Q 022062 208 --RPEIRVVLNVG 218 (303)
Q Consensus 208 --~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 81 ~g~id~l-v~nAg 92 (252)
T 3h7a_A 81 HAPLEVT-IFNVG 92 (252)
T ss_dssp HSCEEEE-EECCC
T ss_pred hCCceEE-EECCC
Confidence 56654 44554
No 240
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=24.80 E-value=3e+02 Score=23.04 Aligned_cols=80 Identities=20% Similarity=0.131 Sum_probs=44.7
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc---
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA--- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~--- 207 (303)
..+++-|||.+| -+-.-++..|.+.|.++....-+. . . ...+.. ..+.++.+++++.+....+.++...+
T Consensus 4 ~~k~vlVTGas~--gIG~~~a~~l~~~G~~V~~~~r~~--~-~-~~~~~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 4 SAKVWLVTGASS--GFGRAIAEAAVAAGDTVIGTARRT--E-A-LDDLVA-AYPDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp CCCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESSG--G-G-GHHHHH-HCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeCCH--H-H-HHHHHH-hccCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 357899999886 455555555557888876433221 0 1 011111 12346667777777776666544322
Q ss_pred --CccEEEEcCCC
Q 022062 208 --RPEIRVVLNVG 218 (303)
Q Consensus 208 --~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 77 ~g~id~l-v~~Ag 88 (281)
T 3m1a_A 77 YGRVDVL-VNNAG 88 (281)
T ss_dssp HSCCSEE-EECCC
T ss_pred CCCCCEE-EECCC
Confidence 67764 44444
No 241
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=24.48 E-value=2.2e+02 Score=23.79 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccc-hhhHHhcccCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g-~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
+.+++-|||..| -+-.-++..|.+.|.++...--+. .... ....+.....+.++.+++++.++..++.++...+
T Consensus 12 ~~k~vlVTGas~--gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 12 TDRVVLITGGGS--GLGRATAVRLAAEGAKLSLVDVSS-EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp TTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEESCH-HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999875 444555555557888875432110 0000 0001111112557778888878776666543322
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|.+
T Consensus 89 ~~g~id~l-v~nAg 101 (267)
T 1iy8_A 89 RFGRIDGF-FNNAG 101 (267)
T ss_dssp HHSCCSEE-EECCC
T ss_pred HcCCCCEE-EECCC
Confidence 57765 44544
No 242
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.42 E-value=33 Score=29.89 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 5689999998 79999999888873
No 243
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=24.39 E-value=38 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.2
Q ss_pred EEEEeCC--CCCcHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIAL 152 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~ 152 (303)
+|.|+|- .||||.+..|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 5777775 589999988887
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=24.17 E-value=97 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeCC--CCCcHHHHHHHHHHHh
Q 022062 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALES 156 (303)
Q Consensus 116 ~al~~la~~~~~p~~~~~vIgVTGT--nGKTTt~~ml~~iL~~ 156 (303)
..+..|...... ......+.|+|- .||||++..++.-+..
T Consensus 30 ~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 30 HVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445555554333 222347788886 4799999999888743
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=23.99 E-value=38 Score=30.84 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
..-++|-|| .||||+..++...+...+.++
T Consensus 37 ~~~i~G~~G-~GKs~~~~~~~~~~~~~~~~~ 66 (392)
T 4ag6_A 37 NWTILAKPG-AGKSFTAKMLLLREYMQGSRV 66 (392)
T ss_dssp CEEEECCTT-SSHHHHHHHHHHHHHTTTCCE
T ss_pred ceEEEcCCC-CCHHHHHHHHHHHHHHCCCEE
Confidence 345666666 589988877776665667665
No 246
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=23.81 E-value=2.2e+02 Score=23.81 Aligned_cols=80 Identities=9% Similarity=0.116 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
.+.+++-|||..| -+-.-++..|.+.|.++...--+ .. ........+ ..+.++..++++.++..++.++...+
T Consensus 9 l~~k~vlVTGas~--gIG~aia~~l~~~G~~V~~~~r~--~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 9 LTDKVVVISGVGP--ALGTTLARRCAEQGADLVLAART--VE-RLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp TTTCEEEEESCCT--THHHHHHHHHHHTTCEEEEEESC--HH-HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCc--HHHHHHHHHHHHCcCEEEEEeCC--HH-HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3457899999886 45555555565889887543221 10 000001111 23567888888888887776654322
Q ss_pred ----CccEEEE
Q 022062 208 ----RPEIRVV 214 (303)
Q Consensus 208 ----~p~iaVi 214 (303)
++|+.|-
T Consensus 84 ~~~g~id~lv~ 94 (264)
T 3ucx_A 84 KAYGRVDVVIN 94 (264)
T ss_dssp HHTSCCSEEEE
T ss_pred HHcCCCcEEEE
Confidence 6787544
No 247
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=23.77 E-value=2.6e+02 Score=24.12 Aligned_cols=80 Identities=10% Similarity=0.037 Sum_probs=43.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCC--CCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccCc
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g--~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~p 209 (303)
.+.|.|||-+|--- .+++.+++ +.| ..+....-.. .......+..+.....+-+++.+......+..+....++
T Consensus 24 ~~~vlVtGatG~iG-~~l~~~L~-~~g~~~~v~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 99 (346)
T 4egb_A 24 AMNILVTGGAGFIG-SNFVHYML-QSYETYKIINFDALT--YSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV 99 (346)
T ss_dssp CEEEEEETTTSHHH-HHHHHHHH-HHCTTEEEEEEECCC--TTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred CCeEEEECCccHHH-HHHHHHHH-hhCCCcEEEEEeccc--cccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence 56799999998433 35666666 566 4443221110 001111122222334666777777777666665543468
Q ss_pred cEEEEc
Q 022062 210 EIRVVL 215 (303)
Q Consensus 210 ~iaViT 215 (303)
|+.|-+
T Consensus 100 d~Vih~ 105 (346)
T 4egb_A 100 QVIVNF 105 (346)
T ss_dssp CEEEEC
T ss_pred CEEEEC
Confidence 876643
No 248
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=23.60 E-value=2.8e+02 Score=23.51 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
.+.+++-|||..| -+-.-++..|.+.|.++...--+ .. ........+ ..+.++..++++.++..++.++...+
T Consensus 30 l~gk~~lVTGas~--GIG~aia~~la~~G~~V~~~~r~--~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 30 LSGKRALITGAST--GIGKKVALAYAEAGAQVAVAARH--SD-ALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp CTTCEEEEESTTS--HHHHHHHHHHHHTTCEEEEEESS--GG-GGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC--HHHHHHHHHHHHCCCEEEEEeCC--HH-HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4457999999885 55555666665888887543222 11 111001111 23456677788888877766654322
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+.| -|-+
T Consensus 105 ~~~g~iD~lv-nnAg 118 (276)
T 3r1i_A 105 GELGGIDIAV-CNAG 118 (276)
T ss_dssp HHHSCCSEEE-ECCC
T ss_pred HHcCCCCEEE-ECCC
Confidence 678754 4444
No 249
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=23.55 E-value=2.2e+02 Score=23.81 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh-cc-cCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GI-DRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~-~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
+.+++-|||..| -+-.-++..|.+.|.++...... +.. . .-.+. .+ ..+.++.+++++.+...++.++...+
T Consensus 25 ~~k~vlITGas~--gIG~a~a~~l~~~G~~V~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (272)
T 4e3z_A 25 DTPVVLVTGGSR--GIGAAVCRLAARQGWRVGVNYAA-NRE-A-ADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVD 99 (272)
T ss_dssp CSCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESS-CHH-H-HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEcCC-Chh-H-HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 467999999886 45555555555888887543221 111 0 01111 11 23557788888888877766654333
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+.| -|.+
T Consensus 100 ~~~g~id~li-~nAg 113 (272)
T 4e3z_A 100 RQFGRLDGLV-NNAG 113 (272)
T ss_dssp HHHSCCCEEE-ECCC
T ss_pred HhCCCCCEEE-ECCC
Confidence 677654 4444
No 250
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=23.55 E-value=3.1e+02 Score=22.53 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc---
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA--- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~--- 207 (303)
+.+++-|||.+| -+-.-++..|.+.|.++....-+ .. ........+ +.++.+++++.++..++.++...+
T Consensus 11 ~~k~vlVTGasg--giG~~~a~~l~~~G~~V~~~~r~--~~-~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 11 KGLVAVITGGAS--GLGLATAERLVGQGASAVLLDLP--NS-GGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp TTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEECT--TS-SHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeCC--cH-hHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999986 44444555554788887543221 11 111111112 346677788777776666544322
Q ss_pred --CccEEEEcCCC
Q 022062 208 --RPEIRVVLNVG 218 (303)
Q Consensus 208 --~p~iaViTNi~ 218 (303)
++|+.| -|.+
T Consensus 84 ~g~id~li-~~Ag 95 (265)
T 2o23_A 84 FGRVDVAV-NCAG 95 (265)
T ss_dssp HSCCCEEE-ECCC
T ss_pred CCCCCEEE-ECCc
Confidence 677654 4433
No 251
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=23.28 E-value=2.4e+02 Score=22.98 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
+.+++-|||.+| -+-.-++..|.+.|.++....-+..... ......+ ..+.++.+++++.++..++.++...+
T Consensus 6 ~~k~vlVTGasg--giG~~~a~~l~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 6 KGKRVLITGSSQ--GIGLATARLFARAGAKVGLHGRKAPANI--DETIASMRADGGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp TTCEEEETTCSS--HHHHHHHHHHHHTTCEEEEEESSCCTTH--HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEECCCchhhH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 346899999886 3444444444478888754322101111 1011111 12456777888877776666543322
Q ss_pred ---CccEEEE
Q 022062 208 ---RPEIRVV 214 (303)
Q Consensus 208 ---~p~iaVi 214 (303)
++|+.|-
T Consensus 82 ~~g~id~vi~ 91 (258)
T 3afn_B 82 KFGGIDVLIN 91 (258)
T ss_dssp HHSSCSEEEE
T ss_pred HcCCCCEEEE
Confidence 5776543
No 252
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=23.16 E-value=51 Score=28.00 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+|.++|-+ ||||++..|+..|
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35678888864 7999999999887
No 253
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=22.69 E-value=2.7e+02 Score=23.63 Aligned_cols=84 Identities=19% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh-cc--cCCCCEEEEEecCCChhhHHHhhcc
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GI--DRAVDIAVLEMGMSGKGEILELARM 206 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~--~~~~~~~V~E~~~s~~~~~~~l~~~ 206 (303)
...+++-|||..| -+-.-++..|.+.|.++...--+ +. .....+. .+ ..+.++.+++++.+...++.++...
T Consensus 23 l~~k~~lVTGas~--GIG~~ia~~la~~G~~V~~~~r~-~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 97 (281)
T 3v2h_A 23 MMTKTAVITGSTS--GIGLAIARTLAKAGANIVLNGFG-AP--DEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAM 97 (281)
T ss_dssp CTTCEEEEETCSS--HHHHHHHHHHHHTTCEEEEECCC-CH--HHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEeCC-Ch--HHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHH
Confidence 4457899999775 45555666665888887543211 10 0001111 11 1245777888888887776655432
Q ss_pred c-----CccEEEEcCCCh
Q 022062 207 A-----RPEIRVVLNVGD 219 (303)
Q Consensus 207 ~-----~p~iaViTNi~~ 219 (303)
+ ++|+. |-|-+.
T Consensus 98 ~~~~~g~iD~l-v~nAg~ 114 (281)
T 3v2h_A 98 VADRFGGADIL-VNNAGV 114 (281)
T ss_dssp HHHHTSSCSEE-EECCCC
T ss_pred HHHHCCCCCEE-EECCCC
Confidence 2 67764 555553
No 254
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=22.68 E-value=44 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|.|-| ||||...+|+.++
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999998 6999988888764
No 255
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.66 E-value=37 Score=29.39 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999998 69999999888773
No 256
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=22.41 E-value=34 Score=28.36 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=16.9
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+..|.++|- .||||.+.+|++-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345666664 58999999998766
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=22.34 E-value=33 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|.|-| ||||...+|+.++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999988 7999999888777
No 258
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=22.32 E-value=47 Score=28.53 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCe
Q 022062 135 VGVTGSVGKSTTKSMIALALESLGVNV 161 (303)
Q Consensus 135 IgVTGTnGKTTt~~ml~~iL~~~g~~~ 161 (303)
++=.|-.||||++--++..|...|+++
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 455677899999888888887889887
No 259
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=22.31 E-value=39 Score=30.56 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
...++|.|.| ||||...+|+.++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999976 59999999999873
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=22.29 E-value=44 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=19.8
Q ss_pred cEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 133 VLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 133 ~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
.+++|.|-| ||||...+|+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999998 69999999988873
No 261
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=22.29 E-value=44 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=16.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 022062 134 LVGVTGSVGKSTTKSMIALALES 156 (303)
Q Consensus 134 vIgVTGTnGKTTt~~ml~~iL~~ 156 (303)
+.|-+|| |||+++..+..-|..
T Consensus 50 i~GpPGT-GKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 50 ITNADDS-TKFQLVNDVMDELIT 71 (318)
T ss_dssp EECCCSH-HHHHHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHHHH
Confidence 4444554 699999999988864
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.26 E-value=38 Score=29.33 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999998 79999998888773
No 263
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=22.24 E-value=2.2e+02 Score=23.57 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc---
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA--- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~--- 207 (303)
..+++-|||..| -+-.-++..|.+.|.++.................. ...+.++.+++++.++..++.++...+
T Consensus 6 ~~k~vlVTGas~--gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 6 FVRHALITAGTK--GLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETY-KDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp CCCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHT-GGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCc--hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999886 45555555555788888643222100000000111 122356778888878877766654323
Q ss_pred --CccEEEEcCCC
Q 022062 208 --RPEIRVVLNVG 218 (303)
Q Consensus 208 --~p~iaViTNi~ 218 (303)
++|+. |-|.+
T Consensus 83 ~g~id~l-v~~Ag 94 (264)
T 3i4f_A 83 FGKIDFL-INNAG 94 (264)
T ss_dssp HSCCCEE-ECCCC
T ss_pred hCCCCEE-EECCc
Confidence 67764 55555
No 264
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.20 E-value=35 Score=29.41 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=17.2
Q ss_pred CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.+.+.++|- .|||+++..++.-+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356777776 46999998888766
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=22.07 E-value=45 Score=28.57 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.6
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALA 153 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~i 153 (303)
..+++|.|-| ||||...+|..+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999998 699998888876
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=21.88 E-value=29 Score=30.60 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHH
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALAL 154 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL 154 (303)
.+-+.|-.|| |||+++..++..+
T Consensus 48 ~vll~G~pGt-GKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGL-AKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCH-HHHHHHHHHHHHT
T ss_pred eEEEECCCCC-cHHHHHHHHHHHh
Confidence 3445555565 6999999998877
No 267
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.81 E-value=39 Score=27.62 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=16.1
Q ss_pred EEEEeCC--CCCcHHHHHHHHHH
Q 022062 134 LVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGT--nGKTTt~~ml~~iL 154 (303)
.|+|+|- .||||++.+|++-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3677774 58999999987655
No 268
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=21.60 E-value=2.1e+02 Score=25.07 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhh-HHhc--ccCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVAL-SLIG--IDRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~-~l~~--~~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
.+++-|||.+| -.-.-++..|-+.|.++..+.-+........+ .+.. ...+.++.+++++.++...+.++...+
T Consensus 5 ~k~vlVTGas~--GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 5 KKIILITGASS--GFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp CCEEEESSCSS--HHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCc--HHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46899999885 45555666665889988654332111111111 1111 123467788888888877666554322
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 83 ~~~g~iD~l-VnnAG 96 (324)
T 3u9l_A 83 GEDGRIDVL-IHNAG 96 (324)
T ss_dssp HHHSCCSEE-EECCC
T ss_pred HHcCCCCEE-EECCC
Confidence 67764 55555
No 269
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.46 E-value=38 Score=28.53 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHhhcCC------CC-CcEEEEeCC--CCCcHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSR------FS-GVLVGVTGS--VGKSTTKSMIALAL 154 (303)
Q Consensus 113 d~~~al~~la~~~~~p~------~~-~~vIgVTGT--nGKTTt~~ml~~iL 154 (303)
+....+..+...|..|. .. .+-+.+.|- .||||+...|+..+
T Consensus 23 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 23 EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45566666665443311 11 122666666 47999999998877
No 270
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=21.19 E-value=2.4e+02 Score=24.18 Aligned_cols=83 Identities=19% Similarity=0.083 Sum_probs=45.6
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhc--ccCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG--IDRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~--~~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
+.+++-|||..| -+-.-++..|.+.|.++....-+.. ......+.. ...+.++.+++++.++..++.++...+
T Consensus 48 ~~k~vlVTGas~--GIG~aia~~la~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 48 KDRKALVTGGDS--GIGRAAAIAYAREGADVAINYLPAE--EEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEECCGGG--HHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEeCCcc--hhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 457899999875 5555566666588888754322100 000011111 123567778888877776665543222
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+.| -|-+
T Consensus 124 ~~~g~iD~lv-~nAg 137 (294)
T 3r3s_A 124 EALGGLDILA-LVAG 137 (294)
T ss_dssp HHHTCCCEEE-ECCC
T ss_pred HHcCCCCEEE-ECCC
Confidence 677654 4444
No 271
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.15 E-value=3.5e+02 Score=22.58 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCc---Cc----cchhh-HH-hc-ccCCCCEEEEEecCCChhh
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWN---NR----VGVAL-SL-IG-IDRAVDIAVLEMGMSGKGE 199 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n---~~----~g~p~-~l-~~-~~~~~~~~V~E~~~s~~~~ 199 (303)
.+.+++-|||.+| -+-.-++..|-+.|.+++..--+.. .. ....+ .+ .. ...+.++..++++.+...+
T Consensus 8 l~gk~vlVTGas~--gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 8 VQDKVVLVTGGAR--GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TTTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH
T ss_pred cCCCEEEEeCCCC--hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH
Confidence 3457999999886 5556666666588988754311100 00 00000 00 01 1235678888888888877
Q ss_pred HHHhhccc-----CccEEEEcCCCh
Q 022062 200 ILELARMA-----RPEIRVVLNVGD 219 (303)
Q Consensus 200 ~~~l~~~~-----~p~iaViTNi~~ 219 (303)
+.++...+ ++|+. |-|-+.
T Consensus 86 v~~~~~~~~~~~g~id~l-v~nAg~ 109 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVV-VANAGI 109 (287)
T ss_dssp HHHHHHHHHHHHSCCCEE-EECCCC
T ss_pred HHHHHHHHHHHcCCCCEE-EECCCc
Confidence 66544322 67764 455443
No 272
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.08 E-value=54 Score=31.28 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHhhcCC------CC-CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 113 NTLNSLVNMACYARNSR------FS-GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 113 d~~~al~~la~~~~~p~------~~-~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+.+..+..++++|. .+ .+-|.+.|-+ |||+++..++.-+
T Consensus 23 ~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 23 EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45556666666555431 11 2336666654 7999999888866
No 273
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=21.02 E-value=3.1e+02 Score=22.95 Aligned_cols=85 Identities=28% Similarity=0.320 Sum_probs=49.2
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh-cc-cCCCCEEEEEecCCChhhHHHhhcc
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GI-DRAVDIAVLEMGMSGKGEILELARM 206 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~-~~~~~~~V~E~~~s~~~~~~~l~~~ 206 (303)
+.+.+++-|||..| -+-.-++..|.+.|.++....... ......+. .+ ..+.++..++++.++..++.++...
T Consensus 15 ~l~~k~~lVTGas~--gIG~aia~~l~~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 15 RLDGKVALVTGSGR--GIGAAVAVHLGRLGAKVVVNYANS---TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp CCTTCEEEESCTTS--HHHHHHHHHHHHTTCEEEEEESSC---HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CcCCCEEEEECCCc--hHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 34568999999874 555666666668898886433221 01001111 11 2356778888888887776655432
Q ss_pred c-----CccEEEEcCCCh
Q 022062 207 A-----RPEIRVVLNVGD 219 (303)
Q Consensus 207 ~-----~p~iaViTNi~~ 219 (303)
+ ++|+. |-|-+.
T Consensus 90 ~~~~~g~id~l-vnnAg~ 106 (270)
T 3is3_A 90 AVAHFGHLDIA-VSNSGV 106 (270)
T ss_dssp HHHHHSCCCEE-ECCCCC
T ss_pred HHHHcCCCCEE-EECCCC
Confidence 2 67764 455543
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.92 E-value=41 Score=28.63 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999998 69999988887763
No 275
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.90 E-value=42 Score=28.98 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999988 79999999888773
No 276
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=20.79 E-value=38 Score=32.63 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=16.9
Q ss_pred EEEEeCCC--CCcHHHHHHHHHH
Q 022062 134 LVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 134 vIgVTGTn--GKTTt~~ml~~iL 154 (303)
.|+|+|-+ ||||+..+|...+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47777754 8999999888877
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=20.73 E-value=40 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4589999998 79999999988873
No 278
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.68 E-value=2e+02 Score=23.78 Aligned_cols=83 Identities=22% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
+.++|-|||.+| -+-.-++..|.+.|.++..... .+..... ..+..+ ..+.++.+++++.+...++.++...+
T Consensus 12 ~~k~vlITGas~--giG~~ia~~l~~~G~~v~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 12 SQRIAYVTGGMG--GIGTSICQRLHKDGFRVVAGCG-PNSPRRV-KWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp -CEEEEETTTTS--HHHHHHHHHHHHTTEEEEEEEC-TTCSSHH-HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEeC-CCHHHHH-HHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999885 4555555555578888754321 1111111 111111 23457777888877776665544322
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|.+
T Consensus 88 ~~g~id~l-v~~Ag 100 (256)
T 3ezl_A 88 EVGEIDVL-VNNAG 100 (256)
T ss_dssp HTCCEEEE-EECCC
T ss_pred hcCCCCEE-EECCC
Confidence 56664 44544
No 279
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.67 E-value=3.3e+02 Score=21.87 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=42.0
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCC--CCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g--~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
.+++.|||..| -+-.-++..|.+.| .++....-+.. .. -.+..+ .+.++.+++++.++...+.++...+
T Consensus 3 ~k~vlItGasg--giG~~la~~l~~~g~~~~V~~~~r~~~-~~---~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 3 PGSVVVTGANR--GIGLGLVQQLVKDKNIRHIIATARDVE-KA---TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CSEEEESSCSS--HHHHHHHHHHHTCTTCCEEEEEESSGG-GC---HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCc--hHHHHHHHHHHhcCCCcEEEEEecCHH-HH---HHHHhc-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 46799999886 44444444454777 77754322210 01 112222 2456777888877776665544322
Q ss_pred -----CccEEEE
Q 022062 208 -----RPEIRVV 214 (303)
Q Consensus 208 -----~p~iaVi 214 (303)
++|+.|.
T Consensus 76 ~~g~~~id~li~ 87 (250)
T 1yo6_A 76 IVGSDGLSLLIN 87 (250)
T ss_dssp HHGGGCCCEEEE
T ss_pred hcCCCCCcEEEE
Confidence 6776654
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=20.64 E-value=60 Score=28.98 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|.|-| ||||...+|..++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 5689999976 5999999999998
No 281
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=20.55 E-value=19 Score=34.30 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhhcCCCCCcEEEEeCCC--CCcHHHHHHHHHHHhCCC
Q 022062 113 NTLNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGV 159 (303)
Q Consensus 113 d~~~al~~la~~~~~p~~~~~vIgVTGTn--GKTTt~~ml~~iL~~~g~ 159 (303)
|+...+..+.-.. .+..+++|.|-| ||||...+|+.++...+.
T Consensus 123 nl~~~y~~vsl~i----~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 123 NLHFMLEKIRMSN----FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHHHHHHHHS----SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred hhhehhhcCceEe----CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 6666665443221 235689999986 799999999998854433
No 282
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.53 E-value=42 Score=28.89 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..+++|.|-| ||||...+|+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999998 69999999988773
No 283
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=20.52 E-value=3.9e+02 Score=22.86 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhccc--CCCCEEEEEecCCChhhHHHhhccc-
Q 022062 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID--RAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 131 ~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~--~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
+.+++-|||.+| -+-.-++..|.+.|.++...--+ .. ........+. ...++.+++++.++..++.++...+
T Consensus 40 ~~k~vlVTGas~--GIG~aia~~la~~G~~V~~~~r~--~~-~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 40 SARSVLVTGGTK--GIGRGIATVFARAGANVAVAARS--PR-ELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCEEEETTTTS--HHHHHHHHHHHHTTCEEEEEESS--GG-GGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc--HHHHHHHHHHHHCCCEEEEEECC--HH-HHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 457999999885 55555666665889887543221 11 1111111121 1247778888888877666543322
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 115 ~~~g~iD~l-vnnAg 128 (293)
T 3rih_A 115 DAFGALDVV-CANAG 128 (293)
T ss_dssp HHHSCCCEE-EECCC
T ss_pred HHcCCCCEE-EECCC
Confidence 67764 45544
No 284
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=20.39 E-value=4e+02 Score=22.66 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=41.4
Q ss_pred CCCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhcccC
Q 022062 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMAR 208 (303)
Q Consensus 129 ~~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~~ 208 (303)
....+.|.|||.+|-- =.+++.+++ +.|+++....-+... .. ...+..+.....+-+++.+......+.++...++
T Consensus 11 ~~~~~~vlVTGatG~i-G~~l~~~L~-~~g~~V~~~~r~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 86 (335)
T 1rpn_A 11 GSMTRSALVTGITGQD-GAYLAKLLL-EKGYRVHGLVARRSS-DT-RWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQ 86 (335)
T ss_dssp ----CEEEEETTTSHH-HHHHHHHHH-HTTCEEEEEECCCSS-CC-CHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHC
T ss_pred cccCCeEEEECCCChH-HHHHHHHHH-HCCCeEEEEeCCCcc-cc-ccchhhccccCceEEEECCCCCHHHHHHHHHHcC
Confidence 3445679999999833 235555555 678887543221111 00 0111111122345566776666666655544346
Q ss_pred ccEEEEc
Q 022062 209 PEIRVVL 215 (303)
Q Consensus 209 p~iaViT 215 (303)
+|+.|-+
T Consensus 87 ~d~Vih~ 93 (335)
T 1rpn_A 87 PQEVYNL 93 (335)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 7876654
No 285
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=20.39 E-value=1.8e+02 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=15.7
Q ss_pred hhcHHHhHhcCCceEEEEc
Q 022062 75 HEFISPELYGKGCVGVIGN 93 (303)
Q Consensus 75 ~~~i~~A~~~~GA~~vv~~ 93 (303)
..|++++.+ .|+.++++.
T Consensus 115 ~~f~~~~~~-aGvdGvIip 132 (271)
T 3nav_A 115 DDFYQRCQK-AGVDSVLIA 132 (271)
T ss_dssp HHHHHHHHH-HTCCEEEET
T ss_pred HHHHHHHHH-CCCCEEEEC
Confidence 579999999 999998875
No 286
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=20.36 E-value=85 Score=27.81 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
...+++.|-+ ||||++.+|+..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4568888876 6999999999988
No 287
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=20.31 E-value=52 Score=28.57 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCCcEEEEeCC--CCCcHHHHHH
Q 022062 130 FSGVLVGVTGS--VGKSTTKSMI 150 (303)
Q Consensus 130 ~~~~vIgVTGT--nGKTTt~~ml 150 (303)
...+.|+|.|. .||||+...|
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHH
Confidence 45788999994 6999876544
No 288
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=20.26 E-value=2.4e+02 Score=23.36 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcccCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
.+.+++-|||..| -.-.-++..|.+.|.++...--+ . .........+ +.++..++++.+...++.++...+
T Consensus 4 l~gk~vlVTGas~--gIG~a~a~~l~~~G~~V~~~~r~--~-~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 4 LAGKTALVTGAAQ--GIGKAIAARLAADGATVIVSDIN--A-EGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTCEEEEETTTS--HHHHHHHHHHHHTTCEEEEECSC--H-HHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEeCC--H-HHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4467899999874 55566666666889887643221 1 0100011112 456777788877776666544322
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 77 ~~g~id~l-v~nAg 89 (247)
T 3rwb_A 77 LTGGIDIL-VNNAS 89 (247)
T ss_dssp HHSCCSEE-EECCC
T ss_pred HCCCCCEE-EECCC
Confidence 57764 44544
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.19 E-value=39 Score=29.40 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL 154 (303)
..+++|.|-| ||||...+|+.++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999998 6999999998876
No 290
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=20.19 E-value=50 Score=30.90 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--CCcHHHHHHHHHHH
Q 022062 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (303)
Q Consensus 132 ~~vIgVTGTn--GKTTt~~ml~~iL~ 155 (303)
..++||.|-| ||||+..+|..++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4589999988 79999998887764
No 291
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Probab=20.09 E-value=33 Score=30.56 Aligned_cols=56 Identities=5% Similarity=-0.193 Sum_probs=37.8
Q ss_pred CccccCCCcEEEEecCCcCChhhcHHHhHhcCCceEEEEcccCCC------CCceEEEEcCCCcccHHHHHHHHH
Q 022062 54 RILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN------WDKGFVQVEGNGNVNTLNSLVNMA 122 (303)
Q Consensus 54 r~v~~~~g~lFval~G~~~dg~~~i~~A~~~~GA~~vv~~~~~~~------~~~~~i~V~~~~~~d~~~al~~la 122 (303)
..+.+ .++||+.. -.++|.+ +||..|++....+. .++|++.|+ +..-++.++..|+
T Consensus 58 ~wvg~--~dlvia~S--------a~~~A~r-rGa~vv~vtsgG~L~~~a~~~~~~~v~vp--~~~~pR~al~~l~ 119 (290)
T 1wiw_A 58 DWGEE--GTLFLLEG--------GYDLGEA-AGMALLAETGRARVVRVGFRPGVEVHIPP--SPLAPYRYLRFLL 119 (290)
T ss_dssp SCCSS--SEEEEEEC--------SSCTTSC-STTC--CCCTTCEEEEEESSTTCSEECCC--CTTHHHHHHHHHH
T ss_pred CccCC--CCEEEEec--------HHHHHHH-cCCeEEEECCCChHHHHHhhCCCCEEeCC--CCCCCHHHHHHHH
Confidence 45788 99999975 4567888 99999888764321 267888887 2225777777774
No 292
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.09 E-value=3.3e+02 Score=22.98 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHhcc-cCCCCEEEEEecCCChhhHHHhhccc-
Q 022062 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMA- 207 (303)
Q Consensus 130 ~~~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~~~s~~~~~~~l~~~~- 207 (303)
...+++-|||..| -+-.-++..|.+.|.++...-.. +. .........+ ..+.++.+++++.++..++.++...+
T Consensus 27 ~~~k~~lVTGas~--GIG~aia~~la~~G~~V~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 27 KARPVAIVTGGRR--GIGLGIARALAASGFDIAITGIG-DA-EGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCEEEEETTTS--HHHHHHHHHHHHTTCEEEEEESC-CH-HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCC--HHHHHHHHHHHHCCCeEEEEeCC-CH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3457899999886 55566666666888887543211 11 0100011111 23567888888888877766554322
Q ss_pred ----CccEEEEcCCC
Q 022062 208 ----RPEIRVVLNVG 218 (303)
Q Consensus 208 ----~p~iaViTNi~ 218 (303)
++|+.| -|-+
T Consensus 103 ~~~g~iD~lv-nnAg 116 (280)
T 4da9_A 103 AEFGRIDCLV-NNAG 116 (280)
T ss_dssp HHHSCCCEEE-EECC
T ss_pred HHcCCCCEEE-ECCC
Confidence 677654 3443
No 293
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=20.06 E-value=3.2e+02 Score=22.77 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=47.4
Q ss_pred CcEEEEeCCCCCcHHHHHHHHHHHhCCCCeEEecCCCcCccchhhHHh-cc-cCCCCEEEEEecCCChhhHHHhhccc--
Q 022062 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GI-DRAVDIAVLEMGMSGKGEILELARMA-- 207 (303)
Q Consensus 132 ~~vIgVTGTnGKTTt~~ml~~iL~~~g~~~~~t~g~~n~~~g~p~~l~-~~-~~~~~~~V~E~~~s~~~~~~~l~~~~-- 207 (303)
.+++-|||..| -+-.-++..|.+.|.++....+. +. .....+. .+ ..+.++.+++++.+...++.++...+
T Consensus 4 ~k~vlVTGas~--gIG~aia~~l~~~G~~vv~~~~r-~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (258)
T 3oid_A 4 NKCALVTGSSR--GVGKAAAIRLAENGYNIVINYAR-SK--KAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDE 78 (258)
T ss_dssp CCEEEESSCSS--HHHHHHHHHHHHTTCEEEEEESS-CH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCc--hHHHHHHHHHHHCCCEEEEEcCC-CH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999875 55566666666889887643221 11 0001111 11 23567888888888887776654333
Q ss_pred ---CccEEEEcCCC
Q 022062 208 ---RPEIRVVLNVG 218 (303)
Q Consensus 208 ---~p~iaViTNi~ 218 (303)
++|+. |-|-+
T Consensus 79 ~~g~id~l-v~nAg 91 (258)
T 3oid_A 79 TFGRLDVF-VNNAA 91 (258)
T ss_dssp HHSCCCEE-EECCC
T ss_pred HcCCCCEE-EECCC
Confidence 67765 44554
Done!