Query 022068
Match_columns 303
No_of_seqs 240 out of 1695
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2d_A [2Fe-2S] ferredoxin; th 99.8 1.3E-19 4.3E-24 145.4 7.3 95 188-289 3-103 (110)
2 2auv_A Potential NAD-reducing 99.6 1.1E-16 3.7E-21 122.4 1.0 78 185-275 3-85 (85)
3 3i9v_2 NADH-quinone oxidoreduc 99.5 5.5E-15 1.9E-19 128.4 4.9 90 184-287 73-168 (181)
4 1m2d_A [2Fe-2S] ferredoxin; th 99.4 5.1E-13 1.7E-17 106.8 6.9 93 86-178 1-96 (110)
5 2auv_A Potential NAD-reducing 98.8 1E-09 3.5E-14 83.4 1.8 80 84-171 2-85 (85)
6 3i9v_2 NADH-quinone oxidoreduc 98.4 2E-07 6.7E-12 80.7 4.3 87 83-178 72-163 (181)
7 4etm_A LMPTP, low molecular we 51.7 21 0.00073 29.6 5.3 39 188-233 19-58 (173)
8 1u2p_A Ptpase, low molecular w 47.8 26 0.00089 28.5 5.2 40 188-234 5-45 (163)
9 2gi4_A Possible phosphotyrosin 47.6 23 0.00078 28.8 4.8 39 189-234 3-42 (156)
10 3jvi_A Protein tyrosine phosph 45.2 25 0.00087 28.7 4.7 39 188-233 5-44 (161)
11 1d1q_A Tyrosine phosphatase (E 44.4 29 0.001 28.2 5.0 39 188-233 8-48 (161)
12 3n8i_A Low molecular weight ph 43.4 28 0.00096 28.3 4.7 39 188-233 6-45 (157)
13 2cwd_A Low molecular weight ph 42.6 31 0.0011 28.0 4.9 41 188-235 5-46 (161)
14 3rof_A Low molecular weight pr 36.3 51 0.0017 26.9 5.1 39 188-234 7-46 (158)
15 3or5_A Thiol:disulfide interch 32.6 90 0.0031 23.8 6.0 35 243-279 119-153 (165)
16 3or1_A Sulfite reductase alpha 28.0 1.4E+02 0.0049 28.5 7.4 82 154-242 139-228 (437)
17 2fvt_A Conserved hypothetical 27.1 67 0.0023 25.6 4.3 63 145-231 33-101 (135)
18 1e2b_A Enzyme IIB-cellobiose; 25.7 1.3E+02 0.0044 22.6 5.5 23 208-232 17-39 (106)
19 3lwa_A Secreted thiol-disulfid 24.9 2.4E+02 0.0082 22.0 7.5 32 244-277 150-181 (183)
20 3or1_B Sulfite reductase beta; 23.9 65 0.0022 30.2 4.2 84 154-242 101-196 (386)
21 2gm2_A Conserved hypothetical 21.1 77 0.0026 25.1 3.5 60 145-231 31-98 (132)
22 2l2q_A PTS system, cellobiose- 21.1 1.5E+02 0.005 22.2 5.0 28 190-224 7-34 (109)
23 4g38_A SIR-HP, sirhp, sulfite 20.2 1.3E+02 0.0044 29.7 5.6 84 189-276 429-535 (570)
24 2ab1_A Hypothetical protein; H 20.2 67 0.0023 25.1 2.9 9 146-154 25-33 (122)
25 1tvm_A PTS system, galactitol- 20.1 1.6E+02 0.0056 22.1 5.2 36 189-232 23-58 (113)
No 1
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.79 E-value=1.3e-19 Score=145.43 Aligned_cols=95 Identities=31% Similarity=0.559 Sum_probs=87.1
Q ss_pred CcEEEEcCCCCCC----Ccccccc-HHHHHHHHHHHHhc-CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEEEe
Q 022068 188 GSYVFVCSHGSRD----KRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYG 261 (303)
Q Consensus 188 ~~~IlVC~~~~rD----~rC~~~G-~~l~~~l~~~l~~~-gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~wYg 261 (303)
+++|+||++.++| .+|..+| .+|+++|++++..+ |+.+.+.|..++|+ |.|..||+|+|+|+ ++||+
T Consensus 3 ~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P~------~~~y~ 75 (110)
T 1m2d_A 3 FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWYG 75 (110)
T ss_dssp CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEEC
T ss_pred ceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEeC------CEEEe
Confidence 5799999997776 3799998 99999999999998 87777999999999 89999999999876 79999
Q ss_pred ecCCCCHHHHHHHHHHCCccccceeeec
Q 022068 262 YVTPDDVPAILDQHIAKGEIIERLWRFV 289 (303)
Q Consensus 262 ~Vtp~dv~~Iv~~~l~~g~~v~~l~rG~ 289 (303)
+|||++|++||++|+.+|+++++|+...
T Consensus 76 ~vt~e~v~~il~~~l~~g~~v~~l~~~~ 103 (110)
T 1m2d_A 76 QVKPEDVDEIVEKHLKGGEPVERLVISK 103 (110)
T ss_dssp SCCGGGHHHHHHHTTTTSCCCGGGEEEC
T ss_pred cCCHHHHHHHHHHHHHCCcChHHhcccC
Confidence 9999999999999999999999988765
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.60 E-value=1.1e-16 Score=122.39 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhcCC----CCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccEE
Q 022068 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (303)
Q Consensus 185 ~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~gl----~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~w 259 (303)
+..+.+|+||+++. |..+| .+|+++|+++|..+++ ++.+.|..++|+ |.|..||+|.++ +.|
T Consensus 3 p~g~~~I~VC~g~~----C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~Cl-G~C~~~P~v~V~--------~~~ 69 (85)
T 2auv_A 3 PKGKYPISVCMGTA----CFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCV-GGCALAPIVMVG--------EKV 69 (85)
T ss_dssp SCCSBCEECCCCHH----HHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSS-SSCTTSCCCEEG--------GGC
T ss_pred CCCCEEEEECCCch----HHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCcc-CcCCCCCEEEEC--------CEE
Confidence 45678999999998 99999 9999999999998877 667999999999 899999999997 799
Q ss_pred EeecCCCCHHHHHHHH
Q 022068 260 YGYVTPDDVPAILDQH 275 (303)
Q Consensus 260 Yg~Vtp~dv~~Iv~~~ 275 (303)
|++|||+++++||++|
T Consensus 70 y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 70 YGNVTPGQVKKILAEY 85 (85)
T ss_dssp CCCSSSSHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHhC
Confidence 9999999999999864
No 3
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=99.52 E-value=5.5e-15 Score=128.41 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCcccccc-HHHHHHHHHHHHhc----CCCCcEEEEEeccCCCCCCCCceeEeCCCCCCCcccE
Q 022068 184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH 258 (303)
Q Consensus 184 e~~~~~~IlVC~~~~rD~rC~~~G-~~l~~~l~~~l~~~----gl~~~v~v~~~sclGG~c~agpvv~v~p~~~~~~~g~ 258 (303)
++..+.+|+||+++. |..+| .+|+++|+++|... ..++.+++..++|+ |.|..||+|.+. +.
T Consensus 73 ~P~gk~~I~VC~gt~----C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~Cl-G~C~~gPvv~V~--------~~ 139 (181)
T 3i9v_2 73 VPTGKYHLQVCATLS----CKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN--------DE 139 (181)
T ss_dssp SCCCSEEEEEECSHH----HHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCC-SCGGGCSCEECS--------SS
T ss_pred CCCCCEEEEECCCch----hhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCC-CccCCCCEEEEC--------CE
Confidence 456789999999998 99999 99999999999753 25678999999999 899999999996 56
Q ss_pred -EEeecCCCCHHHHHHHHHHCCccccceee
Q 022068 259 -WYGYVTPDDVPAILDQHIAKGEIIERLWR 287 (303)
Q Consensus 259 -wYg~Vtp~dv~~Iv~~~l~~g~~v~~l~r 287 (303)
||++|||++|++||++ +.+|++++++..
T Consensus 140 ~~y~~vt~e~v~~Il~~-l~~g~~ve~l~~ 168 (181)
T 3i9v_2 140 PYVECVTRARLEALLAG-LRAGKRLEEIEL 168 (181)
T ss_dssp CCBCCCCHHHHHHHHHH-HHTTCCGGGCCC
T ss_pred EEEcCCCHHHHHHHHHH-HHcCCChhheec
Confidence 9999999999999998 799999998753
No 4
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.38 E-value=5.1e-13 Score=106.78 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred CCCeEEEEEeeCCCC-ccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCC
Q 022068 86 PYGRHVFLCFKGPEM-WVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162 (303)
Q Consensus 86 ~y~rHVfLc~~~p~~-Wp~-~~e~~~s~~L~~~L~~~Ik~r-~~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v~~~ 162 (303)
+|++||+||++...+ +|+ .|...++..+.++|+++++.+ +....+++..+.|+|.|..+|.|+|||+++||.+++++
T Consensus 1 ~~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e 80 (110)
T 1m2d_A 1 AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPE 80 (110)
T ss_dssp --CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGG
T ss_pred CCceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHH
Confidence 368899999865333 443 677777888999999999877 54445778889999999999999999999999999999
Q ss_pred chhHHHHHHhhCCCCC
Q 022068 163 DVDSFVDDVLVNGKPW 178 (303)
Q Consensus 163 dvd~~v~~~L~~g~p~ 178 (303)
++++|+++|+.+|.++
T Consensus 81 ~v~~il~~~l~~g~~v 96 (110)
T 1m2d_A 81 DVDEIVEKHLKGGEPV 96 (110)
T ss_dssp GHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHHHHCCcCh
Confidence 9999999999988775
No 5
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=98.81 E-value=1e-09 Score=83.35 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=65.4
Q ss_pred ccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccC
Q 022068 84 VNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGL 159 (303)
Q Consensus 84 a~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~~----~~~v~~~~t~c~g~c~~gp~vlV~Pd~i~Y~~v 159 (303)
.|.+++||+||... .|...++..+.++|+++++.++. +..+.+..+.|+|.|..+|.|+|+ ++||.++
T Consensus 2 ~p~g~~~I~VC~g~------~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~--~~~y~~v 73 (85)
T 2auv_A 2 VPKGKYPISVCMGT------ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG--EKVYGNV 73 (85)
T ss_dssp CSCCSBCEECCCCH------HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEG--GGCCCCS
T ss_pred CCCCCEEEEECCCc------hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEEC--CEEECCC
Confidence 35668899999842 45566777889999998877655 335677889999999999999997 7899999
Q ss_pred CCCchhHHHHHH
Q 022068 160 KESDVDSFVDDV 171 (303)
Q Consensus 160 ~~~dvd~~v~~~ 171 (303)
+++++++|+++|
T Consensus 74 t~e~v~~il~~~ 85 (85)
T 2auv_A 74 TPGQVKKILAEY 85 (85)
T ss_dssp SSSHHHHHHHHC
T ss_pred CHHHHHHHHHhC
Confidence 999999999864
No 6
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=98.38 E-value=2e-07 Score=80.73 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred CccCCCeEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhcc----CCCCceeeeeccCCCCCCCCeEEEecCcE-Eec
Q 022068 83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRK----DDMTVKSLMTVCGGGEGTDGDVLIFPEMI-KYE 157 (303)
Q Consensus 83 Ta~~y~rHVfLc~~~p~~Wp~~~e~~~s~~L~~~L~~~Ik~r~----~~~~v~~~~t~c~g~c~~gp~vlV~Pd~i-~Y~ 157 (303)
+.|..++||+||.+. .|...|+..+.++|++++.... .+..+++..+.|+|.|+.+|.|.| ++. ||.
T Consensus 72 ~~P~gk~~I~VC~gt------~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V--~~~~~y~ 143 (181)
T 3i9v_2 72 FVPTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVE 143 (181)
T ss_dssp SSCCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEEC--SSSCCBC
T ss_pred CCCCCCEEEEECCCc------hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEE--CCEEEEc
Confidence 344556899999742 4566778889999999886542 233466778999999999999999 667 999
Q ss_pred cCCCCchhHHHHHHhhCCCCC
Q 022068 158 GLKESDVDSFVDDVLVNGKPW 178 (303)
Q Consensus 158 ~v~~~dvd~~v~~~L~~g~p~ 178 (303)
+++++++++|+++ +.+|.++
T Consensus 144 ~vt~e~v~~Il~~-l~~g~~v 163 (181)
T 3i9v_2 144 CVTRARLEALLAG-LRAGKRL 163 (181)
T ss_dssp CCCHHHHHHHHHH-HHTTCCG
T ss_pred CCCHHHHHHHHHH-HHcCCCh
Confidence 9999999999998 7788775
No 7
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=51.67 E-value=21 Score=29.60 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCCCCccccccHHHHHH-HHHHHHhcCCCCcEEEEEec
Q 022068 188 GSYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~G~~l~~~-l~~~l~~~gl~~~v~v~~~s 233 (303)
.+.+|||+++. |-. ++.++ |++.++++|+.+.+.|...|
T Consensus 19 ~kVLFVCtGNi----CRS---pmAE~i~r~~~~~~gl~~~~~v~SAG 58 (173)
T 4etm_A 19 ISVLFVCLGNI----CRS---PMAEAIFRDLAAKKGLEGKIKADSAG 58 (173)
T ss_dssp EEEEEEESSSS----SHH---HHHHHHHHHHHHHTTCTTTEEEEEEE
T ss_pred cEEEEEeCCcc----hhh---HHHHHHHHHHHHHcCCCCceEEeccc
Confidence 46899999987 643 23333 44556678998888888765
No 8
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=47.83 E-value=26 Score=28.53 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSH 234 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~sc 234 (303)
...+|||+|+. |-.- +..+ |++.+.++|+.+.+.|...|=
T Consensus 5 ~~VLFVC~gN~----cRSpmAEal---~~~~~~~~gl~~~~~v~SAGt 45 (163)
T 1u2p_A 5 LHVTFVCTGNI----CRSPMAEKM---FAQQLRHRGLGDAVRVTSAGT 45 (163)
T ss_dssp EEEEEEESSSS----SHHHHHHHH---HHHHHHHTTCTTTEEEEEEES
T ss_pred CEEEEEcCCcH----hHHHHHHHH---HHHHHHHCCCCCcEEEEeccc
Confidence 35899999987 6442 3333 334455678877777776553
No 9
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=47.56 E-value=23 Score=28.79 Aligned_cols=39 Identities=13% Similarity=0.410 Sum_probs=24.5
Q ss_pred cEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 022068 189 SYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSH 234 (303)
Q Consensus 189 ~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~sc 234 (303)
..+|||+++. |-.- +..+ |++.+.++|+.+.+.|...|=
T Consensus 3 ~VLFVC~gNi----cRSpmAEai---~~~~~~~~gl~~~~~v~SAGt 42 (156)
T 2gi4_A 3 KILFICLGNI----CRSPMAEFI---MKDLVKKANLEKEFFINSAGT 42 (156)
T ss_dssp EEEEECSSCS----SHHHHHHHH---HHHHHHHHTTTTTCEEEEEBS
T ss_pred EEEEEeCCCH----HHHHHHHHH---HHHHHHhCCCCCcEEEEeeec
Confidence 5799999987 6432 3333 333445668876677776553
No 10
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=45.21 E-value=25 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEec
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCS 233 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~s 233 (303)
...+|||+++. |-.- +..+ |++.++++|+.+.+.|...|
T Consensus 5 ~~vLFVC~gN~----cRSpmAE~~---~~~~~~~~gl~~~~~v~SAG 44 (161)
T 3jvi_A 5 MKLLFVCLGNI----CRSPAAEAV---MKKVIQNHHLTEKYICDSAG 44 (161)
T ss_dssp EEEEEEESSSS----SHHHHHHHH---HHHHHHHTTCGGGEEEEEEE
T ss_pred cEEEEECCCch----hHHHHHHHH---HHHHHHHcCCCCcEEEEeee
Confidence 35789999987 6432 3333 34445567887778877655
No 11
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=44.45 E-value=29 Score=28.19 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCc-EEEEEec
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQ-IFVKPCS 233 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~-v~v~~~s 233 (303)
...+|||+|+. |-.- +..++ ++.+.++|+.+. +.|...|
T Consensus 8 ~~VLFVCtgN~----cRSpmAEal~---~~~~~~~gl~~~~~~v~SAG 48 (161)
T 1d1q_A 8 ISVAFIALGNF----CRSPMAEAIF---KHEVEKANLENRFNKIDSFG 48 (161)
T ss_dssp EEEEEEESSSS----SHHHHHHHHH---HHHHHHTTCGGGEEEEEEEE
T ss_pred CEEEEEcCCcH----HHHHHHHHHH---HHHHHHcCCCCCeEEEEecc
Confidence 46899999987 6432 33333 344456788766 7777554
No 12
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=43.44 E-value=28 Score=28.34 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEec
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCS 233 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~s 233 (303)
...+|||+++. |-.- +..+ |++.+.++|+.+.+.|...|
T Consensus 6 ~~vLFVC~gN~----cRSpmAE~~---~~~~~~~~gl~~~~~v~SAG 45 (157)
T 3n8i_A 6 KSVLFVCLGNI----CRSPIAEAV---FRKLVTDQNISENWRVDSAA 45 (157)
T ss_dssp EEEEEEESSSS----SHHHHHHHH---HHHHHHHTTCGGGEEEEEEE
T ss_pred CEEEEECCCch----hHHHHHHHH---HHHHHHHcCCCCcEEEEeee
Confidence 46789999987 6432 2333 34445567887778887655
No 13
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=42.58 E-value=31 Score=28.04 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEeccC
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHI 235 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~scl 235 (303)
...+|||+++. |-.- +..|++ +.+.++|+.+.+.|...|=-
T Consensus 5 ~~VLFVC~gN~----cRSpmAEal~~---~~~~~~gl~~~~~v~SAGt~ 46 (161)
T 2cwd_A 5 VRVLFVCLGNI----CRSPMAEGIFR---KLLKERGLEDRFEVDSAGTG 46 (161)
T ss_dssp EEEEEEESSSS----SHHHHHHHHHH---HHHHHHTCTTTEEEEEEESS
T ss_pred CEEEEECCCcH----HHHHHHHHHHH---HHHHHcCCCCcEEEEecccC
Confidence 36899999987 6442 333333 33445688666777765533
No 14
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=36.27 E-value=51 Score=26.88 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCCCCccccc-cHHHHHHHHHHHHhcCCCCcEEEEEecc
Q 022068 188 GSYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSH 234 (303)
Q Consensus 188 ~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~~l~~~gl~~~v~v~~~sc 234 (303)
...+|||++.. |-.- +..+ |++.++++|+.+ +.|...|=
T Consensus 7 ~~vLFVC~gN~----cRSpmAE~i---~~~~~~~~gl~~-~~v~SAGt 46 (158)
T 3rof_A 7 VDVAFVCLGNI----CRSPMAEAI---MRQRLKDRNIHD-IKVHSRGT 46 (158)
T ss_dssp EEEEEEESSSS----SHHHHHHHH---HHHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEeCCch----hHHHHHHHH---HHHHHHHcCCCC-eEEEeccc
Confidence 35799999987 6432 2333 334455678876 77776553
No 15
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=32.62 E-value=90 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=20.5
Q ss_pred ceeEeCCCCCCCcccEEEeecCCCCHHHHHHHHHHCC
Q 022068 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKG 279 (303)
Q Consensus 243 pvv~v~p~~~~~~~g~wYg~Vtp~dv~~Iv~~~l~~g 279 (303)
-++++.++| ..-..+.|..+++++.++|++.+.+.
T Consensus 119 ~~~lid~~G--~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 119 TSFVIDASG--NVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp EEEEECTTS--BEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred eEEEECCCC--cEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 345666653 11123456778888888998876544
No 16
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=27.98 E-value=1.4e+02 Score=28.51 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=50.7
Q ss_pred EEeccCCCCchhHHHHHHh-hCCCCCCCCCCCCCCCcEEEEcCCCCCCCcccccc---HHHHHHHHH----HHHhcCCCC
Q 022068 154 IKYEGLKESDVDSFVDDVL-VNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCG---PALIEKFNA----EIDSRGLKD 225 (303)
Q Consensus 154 i~Y~~v~~~dvd~~v~~~L-~~g~p~~~~~~e~~~~~~IlVC~~~~rD~rC~~~G---~~l~~~l~~----~l~~~gl~~ 225 (303)
+.+..++.+++++++++.. ..|.+. .+.+.. -..|..|.+.. .|...- ..+..+|.+ ++....++.
T Consensus 139 I~L~gi~~e~le~l~~eL~~~~Gl~~-ggsG~~--vRnivaC~G~~---~C~~a~~DT~~la~~L~~~l~~~~~~~~LP~ 212 (437)
T 3or1_A 139 IVLLGTQTPQLEEIFFEMTHNLNTDL-GGSGSN--LRTPESCLGIS---RCEFACYDTQLMCYQLTQDYQDELHRPAFPY 212 (437)
T ss_dssp EEEECCCGGGHHHHHHHHHHHSCCCB-CCCSSS--BCCCEECCGGG---SCSSCCSCHHHHHHHHHHHTHHHHHSCCSSS
T ss_pred EEEecCCHHHHHHHHHHHHhhcCcCc-cccCCc--ceeeecccccc---ccCccccccchhhhhhHhhhhhccccccCCc
Confidence 4556788999999988744 345442 122222 23578888753 354331 444444444 444457777
Q ss_pred cEEEEEeccCCCCCCCC
Q 022068 226 QIFVKPCSHIGGHKYAG 242 (303)
Q Consensus 226 ~v~v~~~sclGG~c~ag 242 (303)
++.|.-+||. ..|.+.
T Consensus 213 KfKI~iSGCp-N~C~~~ 228 (437)
T 3or1_A 213 KFKFKFDGCP-NGCVAS 228 (437)
T ss_dssp CBCEEEESST-TCTTCH
T ss_pred eeeEeecccc-ccccch
Confidence 8899999999 888774
No 17
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=27.15 E-value=67 Score=25.60 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=33.6
Q ss_pred CeEEEecCcEEe------ccCCCCchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEcCCCCCCCccccccHHHHHHHHHHH
Q 022068 145 GDVLIFPEMIKY------EGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEI 218 (303)
Q Consensus 145 p~vlV~Pd~i~Y------~~v~~~dvd~~v~~~L~~g~p~~~~~~e~~~~~~IlVC~~~~rD~rC~~~G~~l~~~l~~~l 218 (303)
..++|+|++++- ..++.++++.|+.. .+ .-..|+|.++.. ... +-.++++.|
T Consensus 33 gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~---~p-----------~pevliiGTG~~-----~~~---l~p~l~~~l 90 (135)
T 2fvt_A 33 GSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDN---AN-----------AIDTLIVGTGAD-----VWI---APRQLREAL 90 (135)
T ss_dssp SEEEECSSCEEEESCCSTTCCCTTTTHHHHHT---TT-----------SCSEEEEECTTS-----CCC---CCHHHHHHH
T ss_pred eCEEEeCCCccccCCCCcccCCHHHHHHHHhc---CC-----------CCCEEEEcCCCC-----CCc---CCHHHHHHH
Confidence 478899998631 12334455544331 10 124788888765 222 234445555
Q ss_pred HhcCCCCcEEEEE
Q 022068 219 DSRGLKDQIFVKP 231 (303)
Q Consensus 219 ~~~gl~~~v~v~~ 231 (303)
.++|+. +++..
T Consensus 91 ~~~GI~--vE~M~ 101 (135)
T 2fvt_A 91 RGVNVV--LDTMQ 101 (135)
T ss_dssp HTTTCE--EEEEC
T ss_pred HHcCCE--EEEeC
Confidence 666764 55554
No 18
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.69 E-value=1.3e+02 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEe
Q 022068 208 PALIEKFNAEIDSRGLKDQIFVKPC 232 (303)
Q Consensus 208 ~~l~~~l~~~l~~~gl~~~v~v~~~ 232 (303)
..+.+.+++.++++|++ +.|..+
T Consensus 17 S~l~~k~~~~~~~~gi~--~~i~a~ 39 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVP--VIIEAF 39 (106)
T ss_dssp HHHHHHHHHHHHHSCCS--EEEEEE
T ss_pred HHHHHHHHHHHHHCCCC--eEEEEe
Confidence 57888999999999997 555543
No 19
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=24.93 E-value=2.4e+02 Score=21.98 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=19.4
Q ss_pred eeEeCCCCCCCcccEEEeecCCCCHHHHHHHHHH
Q 022068 244 LIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIA 277 (303)
Q Consensus 244 vv~v~p~~~~~~~g~wYg~Vtp~dv~~Iv~~~l~ 277 (303)
++++.++| ..-..+.|.++++++.+.|++.+.
T Consensus 150 ~~lid~~G--~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 150 TIVLDKQH--RPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp EEEECTTS--CEEEEECSCCCHHHHHHHHHHHHH
T ss_pred EEEECCCC--cEEEEEcCCCCHHHHHHHHHHHHh
Confidence 66777663 112235566677778777876543
No 20
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=23.88 E-value=65 Score=30.15 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=49.2
Q ss_pred EEeccCCCCchhHHHHHHhhCCCC-----CCCCCCCCCCCcEEEEcCCCCCCCccccc-----c--HHHHHHHHHHHHhc
Q 022068 154 IKYEGLKESDVDSFVDDVLVNGKP-----WASGVQEGLTGSYVFVCSHGSRDKRCGVC-----G--PALIEKFNAEIDSR 221 (303)
Q Consensus 154 i~Y~~v~~~dvd~~v~~~L~~g~p-----~~~~~~e~~~~~~IlVC~~~~rD~rC~~~-----G--~~l~~~l~~~l~~~ 221 (303)
+.+..++.++++++.++....|.. +..+ ..-..-..|..|.+.. .|... + ..|.++|.+.+...
T Consensus 101 I~l~gi~~e~l~~l~~~L~~~Gl~~~~~~~~~g-~~G~~vRni~aC~G~~---~C~~a~~Dt~~~a~~l~~~l~~~~~~~ 176 (386)
T 3or1_B 101 IEFMVDNEETLKALVADLKTRKFAAGSFKFPIG-GTGASISNIVHTQGWV---YCHTPATDASGPVKAVMDELFEEFTSM 176 (386)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCTTSCBSSCBC-CCSSSCCCCBCCCGGG---TCSSCSSCSHHHHHHHHHHTHHHHSCC
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCccccCCCcc-ccCCcccceEecCCcc---ccchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 455678889999998874443321 1111 1111223567777643 25432 1 45555566666556
Q ss_pred CCCCcEEEEEeccCCCCCCCC
Q 022068 222 GLKDQIFVKPCSHIGGHKYAG 242 (303)
Q Consensus 222 gl~~~v~v~~~sclGG~c~ag 242 (303)
.++.++.|.-+||. -.|.+.
T Consensus 177 ~LP~K~kI~vsGCp-n~C~~~ 196 (386)
T 3or1_B 177 RLPAIVRVSLACCI-NMCGAV 196 (386)
T ss_dssp CSSSCCCEEEESST-TCCSSG
T ss_pred ccceeeEEeeccCc-cccccc
Confidence 77777888888998 777653
No 21
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=21.14 E-value=77 Score=25.06 Aligned_cols=60 Identities=8% Similarity=0.201 Sum_probs=33.1
Q ss_pred CeEEEecCcEEec-------cCCCCchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEcCCCCCCCccccc-cHHHHHHHHH
Q 022068 145 GDVLIFPEMIKYE-------GLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVC-GPALIEKFNA 216 (303)
Q Consensus 145 p~vlV~Pd~i~Y~-------~v~~~dvd~~v~~~L~~g~p~~~~~~e~~~~~~IlVC~~~~rD~rC~~~-G~~l~~~l~~ 216 (303)
..++|+|+++.+. .++.++++.+++. .-..|+|.++.. ... -+++.++|
T Consensus 31 g~ilv~p~~~v~~W~~~~~~~l~~e~l~~ll~~----------------~pevliiGTG~~-----~~~l~p~~~~~l-- 87 (132)
T 2gm2_A 31 QSFILMPDELVEHWPVPSLGQLQPAHMDAVLAL----------------NPAVILLGTGER-----QQFPSTDVLAAC-- 87 (132)
T ss_dssp SEEEECSSCEECCCCCSSGGGCCTTTSHHHHHH----------------CCSEEEEECTTS-----CCCCCHHHHHHH--
T ss_pred eCEEEeCCCceeecCCCCcccCCHHHHHHHHhc----------------CCCEEEECCCCC-----CCcCCHHHHHHH--
Confidence 4788999997322 3344555555432 024788998765 222 25555544
Q ss_pred HHHhcCCCCcEEEEE
Q 022068 217 EIDSRGLKDQIFVKP 231 (303)
Q Consensus 217 ~l~~~gl~~~v~v~~ 231 (303)
.++|+. +++..
T Consensus 88 --~~~GI~--vE~m~ 98 (132)
T 2gm2_A 88 --LTRGIG--LEAMT 98 (132)
T ss_dssp --HHHTCE--EEEEC
T ss_pred --HHcCCE--EEEeC
Confidence 445653 44443
No 22
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=21.08 E-value=1.5e+02 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHHHHhcCCC
Q 022068 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLK 224 (303)
Q Consensus 190 ~IlVC~~~~rD~rC~~~G~~l~~~l~~~l~~~gl~ 224 (303)
.++||..+- ... .+.+.+++.+.+.|++
T Consensus 7 IlvvC~~G~------~TS-ll~~kl~~~~~~~gi~ 34 (109)
T 2l2q_A 7 ILLVCGAGM------STS-MLVQRIEKYAKSKNIN 34 (109)
T ss_dssp EEEESSSSC------SSC-HHHHHHHHHHHHHTCS
T ss_pred EEEECCChH------hHH-HHHHHHHHHHHHCCCC
Confidence 566666543 333 7888999999988886
No 23
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=20.25 E-value=1.3e+02 Score=29.69 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=50.2
Q ss_pred cEEEEcCCCCCCCccccc-----c--HHHHHHHHHHHHhcCC-CCcEEEEEeccCCCCCCCCcee---EeC--C------
Q 022068 189 SYVFVCSHGSRDKRCGVC-----G--PALIEKFNAEIDSRGL-KDQIFVKPCSHIGGHKYAGNLI---VYS--P------ 249 (303)
Q Consensus 189 ~~IlVC~~~~rD~rC~~~-----G--~~l~~~l~~~l~~~gl-~~~v~v~~~sclGG~c~agpvv---~v~--p------ 249 (303)
..+..|.+.. .|... + +.|.++|++.+...++ +..+.|.-+||. ..|...-+- ++- +
T Consensus 429 ~~v~aC~G~~---~C~~a~~dt~~~a~~L~~~le~~~~~~~l~p~~iki~vSGCp-n~C~~~~~aDIGlvG~~~g~y~l~ 504 (570)
T 4g38_A 429 ENSMACVSFP---TCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCP-NGCGRAMLAEVGLVGKAPGRYNLH 504 (570)
T ss_dssp HTEEECCCTT---TCTTCSSCSTTTHHHHHHHHHHHHHHTTCTTCCCCEEEESST-TCTTCGGGSSEEEEEEETTEEEEE
T ss_pred cCeEECCCCC---cccchhHhHHHHHHHHHHHHHHHHhhcCCCCCceEEEEeCCC-chhhhccccceEEEEecccceEEE
Confidence 3588998763 36543 2 4588888888887777 556788888998 777653221 111 1
Q ss_pred -CCC-C-CcccE-EEeecCCCCHHHHHHHHH
Q 022068 250 -DSE-G-KIMGH-WYGYVTPDDVPAILDQHI 276 (303)
Q Consensus 250 -~~~-~-~~~g~-wYg~Vtp~dv~~Iv~~~l 276 (303)
.|. + ..-+. .-..|+.+++..+|+..+
T Consensus 505 lGG~~~~~r~g~~~~~~v~~~ei~~~l~~ll 535 (570)
T 4g38_A 505 LGGNRIGTRIPRMYKENITEPEILASLDELI 535 (570)
T ss_dssp ECCCTTSCSCCEEEEEEEEHHHHHHHHHHHH
T ss_pred ECCcCCCcccchhhhcCCCHHHHHHHHHHHH
Confidence 111 0 00123 344678888877776543
No 24
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=20.16 E-value=67 Score=25.08 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=8.1
Q ss_pred eEEEecCcE
Q 022068 146 DVLIFPEMI 154 (303)
Q Consensus 146 ~vlV~Pd~i 154 (303)
+++|+|+++
T Consensus 25 siiv~p~~~ 33 (122)
T 2ab1_A 25 DCKVWPGGS 33 (122)
T ss_dssp EEEEETTEE
T ss_pred CEEEECCcc
Confidence 789999997
No 25
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=20.10 E-value=1.6e+02 Score=22.10 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=23.2
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHHHHhcCCCCcEEEEEe
Q 022068 189 SYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPC 232 (303)
Q Consensus 189 ~~IlVC~~~~rD~rC~~~G~~l~~~l~~~l~~~gl~~~v~v~~~ 232 (303)
..++||..+- .....+...+++.+++.|++ +.|..+
T Consensus 23 kIlvvC~sG~------gTS~ll~~kl~~~~~~~gi~--~~V~~~ 58 (113)
T 1tvm_A 23 KIIVACGGAV------ATSTMAAEEIKELCQSHNIP--VELIQC 58 (113)
T ss_dssp EEEEESCSCS------SHHHHHHHHHHHHHHHTTCC--EEEEEE
T ss_pred EEEEECCCCH------HHHHHHHHHHHHHHHHcCCe--EEEEEe
Confidence 3566666432 22266789999999999987 444443
Done!