BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022069
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 180/285 (63%), Gaps = 20/285 (7%)
Query: 29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
+ P+VFLD +WN+AFV + V VL + EKP PLRVWV GY +QC+LH+ V EYRR
Sbjct: 105 YSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRR 164
Query: 89 KNYCGHRVALVVNGLSPSQTSLSV--------------VKRLGAMNTMISSIWWVIGFYW 134
+ H +GL+ S + V K L + NTM S IWW+IGFYW
Sbjct: 165 RRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYW 224
Query: 135 IVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP-IVALVYAVAT 193
+ GGQ L DSP+LYW+ ++FL FDV FV+FC+ + C+ A+ CC+P I+A++YAVA
Sbjct: 225 VSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD 284
Query: 194 RQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCC 253
++GAS +DI +PK+R+ ++ + + G TE ++S E +L PED++CC
Sbjct: 285 QEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTE-CGTDSPIERSLSPEDAECC 339
Query: 254 ICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298
ICL +Y DG EL LPCNHHFHC CI KWL IN+ CPLCK+NI +
Sbjct: 340 ICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 173/287 (60%), Gaps = 17/287 (5%)
Query: 29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
+ P+V D +WN A V+ S ++L T++E+P P+RVW+ Y LQC HV V+ EY R
Sbjct: 73 YSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR 132
Query: 89 KNYCGHRVAL-------------VVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWI 135
+N L + T+ S VKR ++NT+IS IWW+IGFYW+
Sbjct: 133 RNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWV 192
Query: 136 VVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP-IVALVYAVATR 194
V GG L+ ++P LYW++V+FLA DV F +FC+ + C+ A+ CC+P I+AL+YAVA
Sbjct: 193 VEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGT 252
Query: 195 QGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCI 254
+G S ++ LP Y+++ A H N + + ++ E L ED+DCCI
Sbjct: 253 EGVSEAELGVLPLYKFK-AFHSNEKNITGPGKM--VPIPINGLCLATERTLLAEDADCCI 309
Query: 255 CLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
CLS Y DGAEL+ LPCNHHFH CI KWL++ ATCPLCKYNI +G T
Sbjct: 310 CLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 175/308 (56%), Gaps = 34/308 (11%)
Query: 29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYR- 87
+ P+V LD +WN+AFV V+ +L + KE P PLRVW+ GYALQC LH+ V EYR
Sbjct: 96 YSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRR 155
Query: 88 -----------------------------RKNYCGHRVALVVNGLSPSQ---TSLSVVKR 115
+ G R V LS S SV K
Sbjct: 156 RNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKH 215
Query: 116 LGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFF 175
L + NTM S IWW+IGFYW+ GGQ L ++SPR+YW+++VFL FDV FV+FC+ + C+
Sbjct: 216 LESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIG 275
Query: 176 FAIFCCIP-IVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEM 234
A+ CC+P I+A++YAVA ++GAS +DI L K+++R N E Q
Sbjct: 276 IAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTE 335
Query: 235 SNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294
++S E L ED++CCICLS Y DG EL LPC HHFHC C+ KWL INATCPLCKY
Sbjct: 336 CGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKY 395
Query: 295 NIRRGDTL 302
NI + L
Sbjct: 396 NILKSSNL 403
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 214 bits (545), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 178/303 (58%), Gaps = 34/303 (11%)
Query: 29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
+ P+V LD +WN+AFVVV+ VL + E P PLRVW+ GY LQC +H+ V EYRR
Sbjct: 70 YSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRR 129
Query: 89 KNYCGHRVALVV---------------NGLSPSQTSL--------------SVVKRLGAM 119
+N R GL S+ S S K L +
Sbjct: 130 RNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDERYLELGQLENENNSFAKHLESA 189
Query: 120 NTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIF 179
NTMIS IWWVIGFYW+ GGQ L + SP+LYW+ +VFL FDV FV+FC+ + C+ A+
Sbjct: 190 NTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVC 249
Query: 180 CCIP-IVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQ---DVFGTETEMS 235
CC+P I+A++YAVA ++GAS +DI L K+++R E+Q D G TE
Sbjct: 250 CCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTE-C 308
Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
++S E AL ED++CCICLS Y D EL LPC HHFHCGC+ KWL INATCPLCKYN
Sbjct: 309 GTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYN 368
Query: 296 IRR 298
I +
Sbjct: 369 ILK 371
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 68.9 bits (167), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 32/47 (68%)
Query: 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
SDC ICL +Y+DG EL +PC H FH C+ WL + TCP C++NI
Sbjct: 288 SDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 198 SADDIRNLPKYRYRLAS-------HLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDS 250
S ++I LP ++Y++ +AS +S + + + E S + DEL
Sbjct: 158 SEEEINALPVHKYKVLDPENGCSLAKQASTSSSAEKMLDSANE-SKKGTEDELT------ 210
Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299
C +CL Q G + TLPC H FH GCI WLR TCP+CK+ G
Sbjct: 211 -CSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHSG 258
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 32/47 (68%)
Query: 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
SDC ICL +Y+DG EL +PC H FH C+ WL N TCP C++NI
Sbjct: 200 SDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 246
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
C ICL +Y+DG EL +PC H FH C+ WL + TCP C++NI
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 337
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+++Y +G +L LPC+H +H CI +WL N+TCP+C+
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+++Y +G +L LPC+H +H CI +WL N+TCP+C+
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 30/114 (26%)
Query: 184 IVALVYAVATR-QGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDE 242
++AL V T +G SAD I +LP RY+ E N N T+E
Sbjct: 248 LLALGDIVGTESRGLSADTIASLPSKRYK---------------------EGDNQNGTNE 286
Query: 243 LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
C IC Y D +L LPC H +H CI+ WL+IN CP+C +
Sbjct: 287 S--------CVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEV 332
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
C ICL +Y+DG EL +PC H FH C+ WL N TCP C++NI
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 310
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+++Y +G +L LPC+H +H CI +WL N+TCP+C+
Sbjct: 585 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+++Y +G +L LPC+H +H CI +WL N+TCP+C+
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+++Y +G +L LPC+H +H CI +WL N+TCP+C+
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI--RRGDT 301
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK + +GD+
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDS 292
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ L +H E +
Sbjct: 366 AKPRGLTKADIEQLPSYRFNLENHQS------------------------------EQTL 395
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C S + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 396 CVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRAD 439
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
C ICL +Y+DG EL +PC H FH C+ WL + TCP C++NI
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNI 311
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 127 WWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVA 186
W VIG W L + + W +++L F ++ CI +C+ + + ++
Sbjct: 102 WTVIGTQWFTKSKTCLPEEGQK--WGFLIWLMFSYCGLL-CIAFICVGKWLTRRQVHLLR 158
Query: 187 LVYAVATRQGASADDIRNLPKYRYRLASH-LRASNNSEKQDVFGTETEMSNSNSTDELAL 245
+ + D+ +P + + A +R + G + + + + L
Sbjct: 159 AQQGIPISEFGILVDMIRVPDWAFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQ 218
Query: 246 H---------PED-SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
P+D +C ICL ++ G E+ LPC H+FH CI +WLR+N CP C+
Sbjct: 219 ELPKFRLKAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCR 276
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI 296
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI 296
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI 296
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
C +C+S YV G +L LPC H FH CI +WL N TCP+C+
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICR 673
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI 296
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK +
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNI 296
C ICL +Y DG +L LPC+H +HC C+ WL + TCP+CK +
Sbjct: 240 CAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 240 TDELALHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCK 293
+ E+ L D +C ICLS +V G +L LP CNH FH CI KWL+ + TCP C+
Sbjct: 123 SPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR 177
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
C ICL ++ +G EL + C H FH C+ WL + TCPLC +NI GD+
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDS 321
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
C +C+S YV G +L LPC H FH CI +WL N TCP+C+ +
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPV 658
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 159 FDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVA--TRQGASADDIRNLPKYRYRLASHL 216
FD + VI ++C A+ C + + + + V TR+ S D + N L L
Sbjct: 29 FDTNMVIILAALLC----ALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLG-RL 83
Query: 217 RASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLP-CNHHFH 275
A+ +KQ + + S D A ++C ICL + DG ++ LP CNH FH
Sbjct: 84 AAATGLKKQALKQIPVGLYGSGIIDMKA-----TECLICLGDFEDGEKVRVLPKCNHGFH 138
Query: 276 CGCISKWLRINATCPLCKYNI 296
CI WL ++CP C+ ++
Sbjct: 139 VRCIDTWLLSRSSCPTCRQSL 159
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRG 299
C ICL +Y DG +L LPC H +H C+ WL + TCP+CK + RG
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG 278
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ SH E +
Sbjct: 350 AKPRGLTKADIEQLPSYRFNPDSHQS------------------------------EQTL 379
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C S + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 380 CVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRAD 423
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRG 299
C ICL +Y DG +L LPC H +H C+ WL + TCP+CK + RG
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG 278
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRG 299
C ICL +Y DG +L LPC H +H C+ WL + TCP+CK + RG
Sbjct: 230 CAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRG 278
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ SH E +
Sbjct: 325 AKPRGLTKADIEQLPSYRFNPDSHQS------------------------------EQTL 354
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C S + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 355 CVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 398
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ SH E +
Sbjct: 268 AKPRGLTKADIEQLPSYRFNPDSHQS------------------------------EQTL 297
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C S + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 298 CVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 341
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 205 LPKYRYRLASHLRASN--NSEKQDVFGTETEMSNSNSTDELALHPEDSDCC-ICLSQYVD 261
+ ++RY A ++ N + K+ + T+ + +L DSDCC IC+ Y
Sbjct: 258 IQRFRYMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDL-----DSDCCAICIEAYKP 312
Query: 262 GAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
+ LPC H FH CI WL + TCP+CK ++
Sbjct: 313 TDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDV 347
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296
+DC +CL ++ DG L LP C+H FH CI WL+ ++ CPLC+ NI
Sbjct: 155 TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302
+C +CLS++ D L LP C H FH GCI +WL +ATCPLC+ + D L
Sbjct: 123 ECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDL 175
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCK 293
E SDC +CLS++ + L LP CNH FH CI WL+ ++ CPLC+
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 26/132 (19%)
Query: 172 CIFFFAIFCCIPIVALVYAVATRQGAS-ADDIRNLPKYR--YRLAS----HLRASNNSEK 224
I A+ C +V A+RQ +L K R RLAS R S +
Sbjct: 259 AILLVAMLLCTGLVVQAQRQASRQNQQEPGGQEDLFKRRVVRRLASLKTRRCRLSRAAHS 318
Query: 225 QDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR 284
GTET C +CL + + L LPC H FH C+ WL
Sbjct: 319 LPEPGTET-------------------CAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLM 359
Query: 285 INATCPLCKYNI 296
+ TCPLCK+N+
Sbjct: 360 LQQTCPLCKFNV 371
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 138 GGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGA 197
GG + DS R FD + I I +V +FFF F + I + V
Sbjct: 48 GGSDVSGDSSR----------FDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYG 97
Query: 198 SADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLS 257
+ +D N + A L AS + T S + L + E +C +CL+
Sbjct: 98 NPNDAGNWLATNRQQARGLDAS-------IIETFPTFQYS-TVKTLRIGKEALECSVCLN 149
Query: 258 QYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296
++ D L +P C H FH GCI WLR + TCPLC+ ++
Sbjct: 150 EFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
C ICL ++ +G EL + C H FH C+ WL + TCPLC +NI GD+
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGDS 321
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
P C +CL + + L LPC H FH C+ WL + TCPLCK+N+
Sbjct: 320 PGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNV 369
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 225 QDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR 284
QD G + E S++ D C ICLS DG ++ LPC H FH C+ +WL
Sbjct: 277 QDSKGKKDEGEESDT---------DEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLA 327
Query: 285 INATCPLCKYNI 296
++ CP+C+ +I
Sbjct: 328 MSKKCPICRVDI 339
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 238 NSTDELALHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKY 294
N + E+ L +C ICLS +V G +L LP CNH FH CI KWL + TCP C++
Sbjct: 116 NYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRH 173
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ NN + +
Sbjct: 433 AKPRGLTKADIEQLPSYRFN-------PNNHQSEQTL----------------------- 462
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C+ + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 463 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 506
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 30/104 (28%)
Query: 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSD 251
A +G + DI LP YR+ ++H E +
Sbjct: 436 AKPRGLTKADIEQLPSYRFNPSNHQS------------------------------EQTL 465
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
C +C+ + L LPCNH FH C+ KWL+ N TCP+C+ +
Sbjct: 466 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRAD 509
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYN 295
SDC +CL ++ EL LP C+H FH CI WL N+TCPLC+ N
Sbjct: 120 SDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDN 166
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 220 NNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCI 279
QD G + E S++ D C ICLS DG ++ LPC H FH C+
Sbjct: 271 KKRRPQDGKGKKDEGEESDT---------DEKCTICLSMLEDGEDVRRLPCMHLFHQLCV 321
Query: 280 SKWLRINATCPLCKYNI 296
+WL ++ CP+C+ +I
Sbjct: 322 DQWLAMSKKCPICRVDI 338
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 240 TDELALHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKY 294
+ E+ L +C ICLS +V G +L LP CNH FH CI KWL+ + TCP C++
Sbjct: 123 SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRH 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,825,592
Number of Sequences: 539616
Number of extensions: 4336926
Number of successful extensions: 13614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 13084
Number of HSP's gapped (non-prelim): 572
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)