Query 022069
Match_columns 303
No_of_seqs 273 out of 1800
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.5E-18 3.2E-23 160.4 8.4 78 193-300 203-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 2.9E-16 6.4E-21 104.0 1.4 44 250-293 1-44 (44)
3 COG5540 RING-finger-containing 99.4 2.1E-13 4.5E-18 122.2 3.9 51 248-298 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.4 2.6E-13 5.7E-18 99.6 3.4 45 249-293 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.3 7.8E-13 1.7E-17 117.6 5.1 50 248-297 173-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 1.5E-12 3.3E-17 119.5 6.7 57 242-298 280-346 (491)
7 KOG0317 Predicted E3 ubiquitin 99.2 6.4E-12 1.4E-16 112.5 4.5 60 240-302 230-289 (293)
8 PLN03208 E3 ubiquitin-protein 99.1 3.7E-11 8.1E-16 102.8 4.5 53 246-301 15-83 (193)
9 KOG0823 Predicted E3 ubiquitin 99.1 8.6E-11 1.9E-15 102.4 4.6 55 245-302 43-100 (230)
10 cd00162 RING RING-finger (Real 99.1 1.4E-10 3.1E-15 75.8 3.4 44 251-296 1-45 (45)
11 PF12861 zf-Apc11: Anaphase-pr 99.0 1.6E-10 3.5E-15 86.0 3.9 52 248-299 20-84 (85)
12 PF13920 zf-C3HC4_3: Zinc fing 99.0 7.2E-11 1.6E-15 80.2 1.7 47 248-297 1-48 (50)
13 KOG0802 E3 ubiquitin ligase [P 99.0 2.4E-10 5.2E-15 114.2 2.5 57 242-298 284-342 (543)
14 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.4E-10 7.4E-15 72.8 2.1 39 252-292 1-39 (39)
15 PF14634 zf-RING_5: zinc-RING 98.9 1.5E-09 3.3E-14 71.6 3.0 44 251-294 1-44 (44)
16 PHA02926 zinc finger-like prot 98.8 1.7E-09 3.7E-14 93.8 2.8 52 246-297 167-230 (242)
17 KOG0320 Predicted E3 ubiquitin 98.8 2.4E-09 5.2E-14 89.7 3.1 51 249-300 131-181 (187)
18 smart00504 Ubox Modified RING 98.8 7.4E-09 1.6E-13 73.3 3.9 49 250-301 2-50 (63)
19 smart00184 RING Ring finger. E 98.8 6.2E-09 1.3E-13 65.5 3.0 38 252-292 1-39 (39)
20 PF00097 zf-C3HC4: Zinc finger 98.7 3.8E-09 8.3E-14 68.4 1.5 39 252-292 1-41 (41)
21 PF15227 zf-C3HC4_4: zinc fing 98.7 9.4E-09 2E-13 67.1 1.9 38 252-292 1-42 (42)
22 KOG1734 Predicted RING-contain 98.6 6.1E-09 1.3E-13 92.3 0.8 53 246-298 221-282 (328)
23 KOG0828 Predicted E3 ubiquitin 98.6 2.9E-08 6.2E-13 94.6 5.2 51 248-298 570-635 (636)
24 COG5194 APC11 Component of SCF 98.6 4.1E-08 9E-13 71.3 3.0 44 254-297 36-81 (88)
25 smart00744 RINGv The RING-vari 98.6 4.2E-08 9.2E-13 66.2 2.7 42 251-293 1-49 (49)
26 TIGR00599 rad18 DNA repair pro 98.5 4.4E-08 9.6E-13 93.3 3.3 50 247-299 24-73 (397)
27 COG5574 PEX10 RING-finger-cont 98.5 7.8E-08 1.7E-12 85.4 3.4 53 247-302 213-267 (271)
28 KOG1493 Anaphase-promoting com 98.5 3.5E-08 7.5E-13 71.1 0.3 49 249-297 20-81 (84)
29 KOG0804 Cytoplasmic Zn-finger 98.2 6.3E-07 1.4E-11 84.9 2.8 52 244-297 170-222 (493)
30 PF04564 U-box: U-box domain; 98.2 6.3E-07 1.4E-11 65.7 1.3 51 248-301 3-54 (73)
31 PF11793 FANCL_C: FANCL C-term 98.2 4.1E-07 8.9E-12 66.1 -0.1 49 249-297 2-66 (70)
32 PF13445 zf-RING_UBOX: RING-ty 98.2 9.7E-07 2.1E-11 57.8 1.7 38 252-290 1-43 (43)
33 KOG2164 Predicted E3 ubiquitin 98.1 1E-06 2.3E-11 84.9 2.6 50 249-301 186-240 (513)
34 KOG0287 Postreplication repair 98.1 1E-06 2.2E-11 80.7 0.9 48 250-300 24-71 (442)
35 COG5219 Uncharacterized conser 98.0 9.9E-07 2.2E-11 89.8 0.4 50 248-297 1468-1523(1525)
36 KOG4265 Predicted E3 ubiquitin 98.0 4.3E-06 9.3E-11 77.6 4.1 49 247-298 288-337 (349)
37 KOG2930 SCF ubiquitin ligase, 98.0 2.2E-06 4.8E-11 65.5 1.8 48 249-296 46-107 (114)
38 COG5432 RAD18 RING-finger-cont 97.9 7E-06 1.5E-10 73.9 2.2 44 250-296 26-69 (391)
39 KOG2177 Predicted E3 ubiquitin 97.8 6.1E-06 1.3E-10 74.8 1.3 46 246-294 10-55 (386)
40 KOG4445 Uncharacterized conser 97.8 7.9E-06 1.7E-10 73.9 0.8 51 249-299 115-188 (368)
41 KOG0825 PHD Zn-finger protein 97.7 9.4E-06 2E-10 81.5 1.2 50 250-299 124-173 (1134)
42 KOG4172 Predicted E3 ubiquitin 97.7 9.9E-06 2.1E-10 54.8 -0.1 47 248-297 6-54 (62)
43 KOG1039 Predicted E3 ubiquitin 97.5 4E-05 8.7E-10 71.9 2.2 50 247-296 159-220 (344)
44 KOG0311 Predicted E3 ubiquitin 97.3 2.6E-05 5.6E-10 72.2 -2.2 49 248-299 42-92 (381)
45 KOG1428 Inhibitor of type V ad 97.3 0.00018 3.9E-09 76.4 3.1 54 245-298 3482-3545(3738)
46 KOG1941 Acetylcholine receptor 97.2 7.6E-05 1.6E-09 69.9 0.2 45 250-294 366-413 (518)
47 KOG1785 Tyrosine kinase negati 97.2 9.9E-05 2.2E-09 69.3 0.8 51 250-303 370-422 (563)
48 KOG4159 Predicted E3 ubiquitin 97.2 0.00017 3.8E-09 69.0 2.2 49 247-298 82-130 (398)
49 PF14835 zf-RING_6: zf-RING of 97.2 0.00011 2.3E-09 51.9 0.4 47 250-300 8-54 (65)
50 PF05883 Baculo_RING: Baculovi 96.9 0.00034 7.4E-09 56.7 1.3 36 249-284 26-67 (134)
51 PHA02862 5L protein; Provision 96.9 0.00069 1.5E-08 55.3 2.7 44 249-296 2-52 (156)
52 KOG0297 TNF receptor-associate 96.8 0.00064 1.4E-08 65.5 2.3 54 246-301 18-71 (391)
53 PF12906 RINGv: RING-variant d 96.8 0.00059 1.3E-08 45.5 1.4 40 252-292 1-47 (47)
54 KOG3970 Predicted E3 ubiquitin 96.7 0.0016 3.4E-08 57.0 3.5 54 248-302 49-110 (299)
55 PF11789 zf-Nse: Zinc-finger o 96.6 0.00074 1.6E-08 46.9 0.9 41 249-291 11-53 (57)
56 KOG0978 E3 ubiquitin ligase in 96.6 0.00053 1.1E-08 69.5 0.1 50 249-301 643-693 (698)
57 KOG0801 Predicted E3 ubiquitin 96.6 0.00078 1.7E-08 55.9 1.0 39 239-277 167-205 (205)
58 PHA02825 LAP/PHD finger-like p 96.6 0.002 4.3E-08 53.6 3.3 47 246-296 5-58 (162)
59 KOG1814 Predicted E3 ubiquitin 95.8 0.0042 9E-08 58.9 1.7 47 248-294 183-237 (445)
60 COG5152 Uncharacterized conser 95.8 0.0031 6.6E-08 54.2 0.6 44 250-296 197-240 (259)
61 PF14570 zf-RING_4: RING/Ubox 95.8 0.0038 8.1E-08 41.6 0.9 45 252-296 1-47 (48)
62 KOG1952 Transcription factor N 95.8 0.0047 1E-07 63.3 2.0 50 245-294 187-244 (950)
63 KOG2879 Predicted E3 ubiquitin 95.8 0.013 2.7E-07 53.0 4.4 53 243-297 233-287 (298)
64 PF10367 Vps39_2: Vacuolar sor 95.8 0.0041 9E-08 48.3 1.2 35 246-281 75-109 (109)
65 KOG3039 Uncharacterized conser 95.7 0.0098 2.1E-07 52.8 3.2 55 248-302 220-275 (303)
66 KOG1571 Predicted E3 ubiquitin 95.6 0.0099 2.2E-07 55.6 3.3 46 246-297 302-347 (355)
67 KOG0827 Predicted E3 ubiquitin 95.3 0.00094 2E-08 62.7 -4.6 50 249-298 196-246 (465)
68 PHA03096 p28-like protein; Pro 95.1 0.0097 2.1E-07 54.8 1.5 44 250-293 179-230 (284)
69 PF14447 Prok-RING_4: Prokaryo 95.0 0.013 2.8E-07 40.1 1.5 46 251-301 9-54 (55)
70 KOG1002 Nucleotide excision re 95.0 0.0096 2.1E-07 58.1 1.1 48 248-298 535-587 (791)
71 KOG1813 Predicted E3 ubiquitin 94.9 0.0086 1.9E-07 54.5 0.6 45 250-297 242-286 (313)
72 KOG1645 RING-finger-containing 94.9 0.017 3.7E-07 54.8 2.6 32 264-295 21-54 (463)
73 KOG4692 Predicted E3 ubiquitin 94.8 0.018 3.8E-07 53.7 2.2 48 247-297 420-467 (489)
74 KOG2660 Locus-specific chromos 94.8 0.008 1.7E-07 55.5 -0.1 51 246-299 12-63 (331)
75 PF07800 DUF1644: Protein of u 93.9 0.073 1.6E-06 44.4 3.7 37 248-284 1-47 (162)
76 COG5222 Uncharacterized conser 93.6 0.036 7.9E-07 50.6 1.7 45 250-297 275-322 (427)
77 COG5236 Uncharacterized conser 93.2 0.14 3.1E-06 47.8 4.8 48 246-296 58-107 (493)
78 KOG1940 Zn-finger protein [Gen 93.1 0.047 1E-06 49.9 1.6 45 250-294 159-204 (276)
79 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.094 2E-06 47.8 3.5 55 247-302 111-166 (260)
80 KOG0826 Predicted E3 ubiquitin 93.0 0.23 4.9E-06 46.1 5.8 49 245-296 296-345 (357)
81 KOG4275 Predicted E3 ubiquitin 92.8 0.016 3.4E-07 52.8 -1.9 43 249-298 300-343 (350)
82 KOG1609 Protein involved in mR 92.7 0.094 2E-06 48.6 3.0 49 249-297 78-134 (323)
83 KOG1100 Predicted E3 ubiquitin 92.5 0.089 1.9E-06 46.3 2.4 40 252-298 161-201 (207)
84 KOG3268 Predicted E3 ubiquitin 92.1 0.094 2E-06 44.5 2.0 47 251-297 167-228 (234)
85 KOG3053 Uncharacterized conser 91.2 0.11 2.4E-06 46.5 1.6 48 249-296 20-81 (293)
86 KOG1001 Helicase-like transcri 90.6 0.064 1.4E-06 55.2 -0.5 47 250-300 455-503 (674)
87 COG5183 SSM4 Protein involved 90.6 0.18 3.9E-06 51.8 2.6 53 247-300 10-69 (1175)
88 KOG2114 Vacuolar assembly/sort 90.2 0.15 3.2E-06 52.8 1.7 42 250-296 841-882 (933)
89 PF08746 zf-RING-like: RING-li 90.0 0.098 2.1E-06 34.1 0.1 41 252-292 1-43 (43)
90 KOG2034 Vacuolar sorting prote 89.9 0.14 3E-06 53.2 1.2 35 248-283 816-850 (911)
91 KOG0802 E3 ubiquitin ligase [P 89.7 0.18 3.8E-06 50.9 1.8 51 244-301 474-524 (543)
92 PF10272 Tmpp129: Putative tra 89.0 0.43 9.2E-06 45.4 3.7 28 270-297 311-351 (358)
93 KOG2932 E3 ubiquitin ligase in 88.6 0.15 3.3E-06 46.9 0.3 51 243-297 84-134 (389)
94 PF14446 Prok-RING_1: Prokaryo 88.5 0.55 1.2E-05 32.1 2.9 44 248-295 4-50 (54)
95 PF03854 zf-P11: P-11 zinc fin 88.3 0.17 3.7E-06 33.4 0.4 33 267-299 15-48 (50)
96 KOG4362 Transcriptional regula 85.9 0.18 3.9E-06 51.4 -0.8 49 248-299 20-71 (684)
97 COG5175 MOT2 Transcriptional r 85.6 0.52 1.1E-05 44.0 2.1 52 248-299 13-66 (480)
98 KOG3161 Predicted E3 ubiquitin 84.8 0.22 4.8E-06 50.0 -0.7 43 250-295 12-55 (861)
99 KOG0825 PHD Zn-finger protein 83.9 0.81 1.7E-05 47.2 2.7 52 246-297 93-154 (1134)
100 KOG0298 DEAD box-containing he 82.8 0.32 7E-06 52.5 -0.6 46 249-296 1153-1198(1394)
101 KOG0309 Conserved WD40 repeat- 82.7 0.83 1.8E-05 46.9 2.3 39 252-291 1031-1069(1081)
102 KOG3002 Zn finger protein [Gen 82.7 0.9 2E-05 42.2 2.4 46 247-297 46-91 (299)
103 KOG3899 Uncharacterized conser 82.1 0.58 1.3E-05 42.8 0.8 28 270-297 325-365 (381)
104 COG5220 TFB3 Cdk activating ki 81.3 0.61 1.3E-05 41.5 0.7 47 248-294 9-61 (314)
105 KOG2817 Predicted E3 ubiquitin 79.9 1.5 3.2E-05 41.9 2.8 48 249-296 334-384 (394)
106 KOG1812 Predicted E3 ubiquitin 77.8 0.89 1.9E-05 43.8 0.7 39 248-286 145-184 (384)
107 KOG3005 GIY-YIG type nuclease 77.0 2.7 5.8E-05 38.2 3.4 48 249-296 182-242 (276)
108 KOG1829 Uncharacterized conser 74.9 0.95 2.1E-05 45.6 -0.0 41 249-292 511-556 (580)
109 PF14169 YdjO: Cold-inducible 74.6 1.6 3.4E-05 30.5 1.0 15 287-301 40-54 (59)
110 KOG2066 Vacuolar assembly/sort 73.7 0.91 2E-05 46.8 -0.5 44 248-292 783-830 (846)
111 PF07975 C1_4: TFIIH C1-like d 73.3 2.6 5.6E-05 28.5 1.8 41 252-293 2-50 (51)
112 KOG3113 Uncharacterized conser 71.0 3.6 7.9E-05 37.0 2.7 53 249-303 111-164 (293)
113 KOG4185 Predicted E3 ubiquitin 69.9 3.3 7.2E-05 38.1 2.4 32 265-296 22-54 (296)
114 smart00249 PHD PHD zinc finger 69.5 2.6 5.7E-05 26.6 1.2 30 252-281 2-31 (47)
115 PF05290 Baculo_IE-1: Baculovi 67.5 4.2 9.2E-05 33.0 2.2 50 248-300 79-135 (140)
116 PF13901 DUF4206: Domain of un 64.8 4.7 0.0001 35.2 2.2 40 249-293 152-196 (202)
117 KOG3842 Adaptor protein Pellin 64.3 7.5 0.00016 36.2 3.4 54 246-299 338-416 (429)
118 KOG1815 Predicted E3 ubiquitin 63.9 3.7 8E-05 40.3 1.5 39 246-286 67-105 (444)
119 KOG0269 WD40 repeat-containing 63.3 7.9 0.00017 40.1 3.6 42 248-291 778-820 (839)
120 KOG4718 Non-SMC (structural ma 63.2 3.4 7.3E-05 36.3 0.9 41 250-292 182-222 (235)
121 PF13717 zinc_ribbon_4: zinc-r 60.1 4.1 8.8E-05 25.3 0.7 25 251-275 4-36 (36)
122 PF02891 zf-MIZ: MIZ/SP-RING z 57.4 2.6 5.5E-05 28.3 -0.6 42 251-295 4-50 (50)
123 smart00132 LIM Zinc-binding do 56.3 13 0.00028 22.3 2.5 36 252-296 2-37 (39)
124 PF04423 Rad50_zn_hook: Rad50 56.2 1.8 3.8E-05 29.4 -1.6 13 287-299 21-33 (54)
125 PF10856 DUF2678: Protein of u 53.9 17 0.00038 28.8 3.4 37 51-88 47-84 (118)
126 PF00628 PHD: PHD-finger; Int 52.6 4.2 9.1E-05 26.8 -0.2 43 252-294 2-50 (51)
127 PF10571 UPF0547: Uncharacteri 51.8 6.5 0.00014 22.6 0.6 21 252-274 3-24 (26)
128 PF04710 Pellino: Pellino; In 48.9 5.7 0.00012 38.1 0.0 51 249-299 328-403 (416)
129 KOG1812 Predicted E3 ubiquitin 48.3 8.4 0.00018 37.2 1.0 44 249-292 306-351 (384)
130 COG3671 Predicted membrane pro 46.3 73 0.0016 25.5 5.8 44 149-192 69-113 (125)
131 KOG2068 MOT2 transcription fac 45.6 16 0.00035 34.3 2.4 48 250-298 250-299 (327)
132 cd00350 rubredoxin_like Rubred 45.3 13 0.00028 22.5 1.2 11 285-295 16-26 (33)
133 TIGR00622 ssl1 transcription f 44.7 27 0.00059 27.6 3.2 44 250-293 56-110 (112)
134 COG5524 Bacteriorhodopsin [Gen 44.3 55 0.0012 30.1 5.5 101 22-140 104-218 (285)
135 COG5109 Uncharacterized conser 44.2 17 0.00037 33.9 2.3 44 250-293 337-383 (396)
136 PRK05978 hypothetical protein; 42.0 15 0.00032 30.6 1.4 25 270-299 39-65 (148)
137 KOG1278 Endosomal membrane pro 41.1 54 0.0012 33.2 5.3 26 32-57 269-294 (628)
138 PF06814 Lung_7-TM_R: Lung sev 36.5 1.5E+02 0.0033 27.1 7.5 64 30-93 44-108 (295)
139 PF06844 DUF1244: Protein of u 33.2 25 0.00053 25.1 1.2 12 273-284 11-22 (68)
140 PF01102 Glycophorin_A: Glycop 33.0 41 0.00089 27.0 2.6 17 188-204 85-101 (122)
141 PF10083 DUF2321: Uncharacteri 32.8 13 0.00028 31.1 -0.3 44 254-300 9-53 (158)
142 PF07191 zinc-ribbons_6: zinc- 32.3 3.8 8.2E-05 29.6 -3.1 39 250-296 2-40 (70)
143 PF13719 zinc_ribbon_5: zinc-r 32.1 24 0.00052 21.9 0.9 25 251-275 4-36 (37)
144 KOG1729 FYVE finger containing 31.5 8.5 0.00018 35.6 -1.7 37 251-287 216-252 (288)
145 PHA02898 virion envelope prote 30.2 48 0.001 25.0 2.4 39 54-92 33-74 (92)
146 KOG3970 Predicted E3 ubiquitin 30.2 38 0.00083 30.1 2.1 29 274-302 31-66 (299)
147 KOG2041 WD40 repeat protein [G 29.8 74 0.0016 33.3 4.3 50 244-297 1126-1185(1189)
148 KOG2807 RNA polymerase II tran 29.7 57 0.0012 30.7 3.3 46 249-295 330-376 (378)
149 KOG3799 Rab3 effector RIM1 and 29.6 11 0.00023 30.8 -1.3 52 244-295 60-116 (169)
150 PF00412 LIM: LIM domain; Int 29.3 31 0.00068 22.9 1.2 40 252-300 1-40 (58)
151 PF07649 C1_3: C1-like domain; 29.1 28 0.00061 20.3 0.8 29 251-279 2-30 (30)
152 PF09237 GAGA: GAGA factor; I 28.2 16 0.00034 24.8 -0.4 10 288-297 26-35 (54)
153 PF09723 Zn-ribbon_8: Zinc rib 27.9 18 0.00038 23.2 -0.2 28 266-294 7-34 (42)
154 KOG2169 Zn-finger transcriptio 27.9 28 0.00061 35.9 1.1 37 266-302 316-361 (636)
155 TIGR02741 TraQ type-F conjugat 27.9 60 0.0013 23.6 2.4 23 28-54 32-54 (80)
156 smart00531 TFIIE Transcription 27.5 50 0.0011 27.2 2.3 15 287-301 124-138 (147)
157 PF09125 COX2-transmemb: Cytoc 27.5 79 0.0017 19.8 2.6 22 28-49 11-32 (38)
158 PF05624 LSR: Lipolysis stimul 27.3 38 0.00082 22.3 1.2 11 151-161 2-12 (49)
159 PRK11827 hypothetical protein; 27.3 21 0.00045 25.0 0.0 19 280-298 2-20 (60)
160 PLN02189 cellulose synthase 26.8 70 0.0015 34.8 3.7 50 248-297 33-87 (1040)
161 PF13832 zf-HC5HC2H_2: PHD-zin 26.6 59 0.0013 25.0 2.5 33 248-282 54-88 (110)
162 PF14311 DUF4379: Domain of un 26.4 39 0.00085 22.7 1.3 22 270-292 34-55 (55)
163 PF03119 DNA_ligase_ZBD: NAD-d 26.0 24 0.00052 20.6 0.1 11 288-298 1-11 (28)
164 KOG3039 Uncharacterized conser 25.8 54 0.0012 29.7 2.3 31 250-283 44-74 (303)
165 PF01363 FYVE: FYVE zinc finge 25.7 23 0.0005 24.8 -0.0 36 248-283 8-44 (69)
166 KOG1245 Chromatin remodeling c 25.2 22 0.00047 40.0 -0.3 51 246-296 1105-1159(1404)
167 KOG3579 Predicted E3 ubiquitin 24.7 72 0.0016 29.5 2.9 47 249-296 268-327 (352)
168 PF06906 DUF1272: Protein of u 24.4 1.4E+02 0.0029 20.7 3.5 46 251-298 7-53 (57)
169 cd00065 FYVE FYVE domain; Zinc 23.4 60 0.0013 21.6 1.8 35 250-284 3-38 (57)
170 PF10146 zf-C4H2: Zinc finger- 22.8 51 0.0011 29.5 1.7 13 284-296 206-218 (230)
171 PF13239 2TM: 2TM domain 22.2 88 0.0019 22.9 2.6 41 44-84 22-63 (83)
172 KOG2927 Membrane component of 22.0 1E+02 0.0022 29.4 3.4 16 121-136 241-259 (372)
173 KOG2071 mRNA cleavage and poly 21.6 45 0.00098 33.7 1.2 35 247-282 511-556 (579)
174 PLN02195 cellulose synthase A 21.5 1.4E+02 0.003 32.4 4.7 52 250-301 7-63 (977)
175 PF09889 DUF2116: Uncharacteri 21.5 52 0.0011 22.9 1.1 17 285-301 2-18 (59)
176 COG4068 Uncharacterized protei 21.5 53 0.0011 22.8 1.1 16 286-301 8-23 (64)
177 PLN02436 cellulose synthase A 21.2 1E+02 0.0022 33.7 3.7 50 248-297 35-89 (1094)
178 COG3944 Capsular polysaccharid 21.2 1.6E+02 0.0035 26.1 4.3 77 2-93 112-202 (226)
179 PRK00523 hypothetical protein; 20.8 2.6E+02 0.0057 20.3 4.6 16 190-205 33-48 (72)
180 KOG4185 Predicted E3 ubiquitin 20.7 15 0.00032 33.8 -2.4 48 248-295 206-265 (296)
181 smart00734 ZnF_Rad18 Rad18-lik 20.4 48 0.001 18.9 0.6 11 287-297 2-12 (26)
182 PF04272 Phospholamban: Phosph 20.2 1.8E+02 0.004 19.0 3.3 11 166-176 35-45 (52)
183 smart00064 FYVE Protein presen 20.2 88 0.0019 21.7 2.2 37 249-285 10-47 (68)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-18 Score=160.42 Aligned_cols=78 Identities=35% Similarity=0.831 Sum_probs=64.9
Q ss_pred ccCCCCHHHHhcCCcceeccccccccCCCCccccccCCcccccCCCCcccccCCCCCCcceeecccccCCCceEEeCCCC
Q 022069 193 TRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNH 272 (303)
Q Consensus 193 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H 272 (303)
+.+++.++.++++|...|+ ...+++ ....|+|||++|++||.+|.|||+|
T Consensus 203 ~~~r~~k~~l~~~p~~~f~-----~~~~~~-------------------------~~~~CaIClEdY~~GdklRiLPC~H 252 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFT-----KGDDED-------------------------ATDTCAICLEDYEKGDKLRILPCSH 252 (348)
T ss_pred hhhhhHHHHHhhCCcEEec-----cccccC-------------------------CCceEEEeecccccCCeeeEecCCC
Confidence 5678899999999999999 111110 1147999999999999999999999
Q ss_pred ccChhhHHHHHhcCCC-CcccccCccCCC
Q 022069 273 HFHCGCISKWLRINAT-CPLCKYNIRRGD 300 (303)
Q Consensus 273 ~FH~~CI~~WL~~~~t-CPlCR~~I~~~~ 300 (303)
.||..|||+||..+.+ ||+||+++.++.
T Consensus 253 ~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 253 KFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred chhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 9999999999988755 999999987654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=2.9e-16 Score=103.97 Aligned_cols=44 Identities=45% Similarity=1.238 Sum_probs=40.8
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR 293 (303)
++|+||++++++++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-13 Score=122.18 Aligned_cols=51 Identities=39% Similarity=1.100 Sum_probs=47.4
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~ 298 (303)
..-+|+|||++|-.+|+++.|||+|.||..|+++|+. -+..||+||+++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999999999999999999999999999997 67899999999976
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.38 E-value=2.6e-13 Score=99.59 Aligned_cols=45 Identities=47% Similarity=1.060 Sum_probs=36.9
Q ss_pred CCcceeecccccCC----------CceEEeCCCCccChhhHHHHHhcCCCCcccc
Q 022069 249 DSDCCICLSQYVDG----------AELYTLPCNHHFHCGCISKWLRINATCPLCK 293 (303)
Q Consensus 249 d~~C~ICL~~y~~~----------~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR 293 (303)
+..|+||++++.+. -.+...+|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45599999999432 3456678999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.35 E-value=7.8e-13 Score=117.56 Aligned_cols=50 Identities=32% Similarity=0.778 Sum_probs=41.7
Q ss_pred CCCcceeecccccCCCc----eEE-eCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAE----LYT-LPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~----lr~-LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
++.+|+||++.+.+++. +.. ++|+|.||.+||.+|++.+.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 46789999999876531 234 469999999999999999999999999764
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.5e-12 Score=119.54 Aligned_cols=57 Identities=32% Similarity=0.785 Sum_probs=47.9
Q ss_pred cccCCCCCCcceeeccc-ccCCC---------ceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 242 ELALHPEDSDCCICLSQ-YVDGA---------ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 242 ~~~~~~ed~~C~ICL~~-y~~~~---------~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++++.+.|..|.||+++ ++.+. ..+.|||||.||..|++.|++++++||+||.++..
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 34456788999999999 55542 34789999999999999999999999999999643
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.4e-12 Score=112.47 Aligned_cols=60 Identities=25% Similarity=0.674 Sum_probs=51.7
Q ss_pred cccccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069 240 TDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302 (303)
Q Consensus 240 ~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i 302 (303)
..+......+..|.+||+.-++. ..+||||+||..||..|...++.||+||....+.+.+
T Consensus 230 ~~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 230 NSLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred cCCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 34445556678899999997776 8999999999999999999999999999999988765
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.14 E-value=3.7e-11 Score=102.84 Aligned_cols=53 Identities=36% Similarity=0.739 Sum_probs=43.7
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc----------------CCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI----------------NATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~----------------~~tCPlCR~~I~~~~~ 301 (303)
..++.+|+||++.++++ ..++|||.||..||.+|+.. ..+||+||+++..++.
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 34578899999998776 67899999999999999852 3579999999976543
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.6e-11 Score=102.39 Aligned_cols=55 Identities=29% Similarity=0.633 Sum_probs=46.0
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccccCccCCCCC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRGDTL 302 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~~i 302 (303)
......+|.|||+.-++. ..+.|||.||+.||.+||+.+ ..||+||..|..++++
T Consensus 43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 344678899999997666 788899999999999999764 5689999999877654
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.05 E-value=1.4e-10 Score=75.80 Aligned_cols=44 Identities=45% Similarity=1.110 Sum_probs=37.0
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCc
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNI 296 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I 296 (303)
+|+||++.+ .+.....+|+|.||.+|+++|++. +..||.||.++
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 334556669999999999999987 77899999864
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.04 E-value=1.6e-10 Score=85.95 Aligned_cols=52 Identities=35% Similarity=0.781 Sum_probs=41.0
Q ss_pred CCCcceeeccccc--------CCC--ceEEeCCCCccChhhHHHHHhc---CCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYV--------DGA--ELYTLPCNHHFHCGCISKWLRI---NATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~--------~~~--~lr~LpC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~ 299 (303)
+|+.|.||...|+ +|+ .+..-.|+|.||..||.+|++. +.+||+||++...+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 4788999999998 233 3444459999999999999975 57899999986543
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.04 E-value=7.2e-11 Score=80.18 Aligned_cols=47 Identities=36% Similarity=0.865 Sum_probs=39.7
Q ss_pred CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
|+..|.||++...+ ...+||||. |+.+|..+|++.+.+||+||++|.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999998554 688999999 999999999999999999999875
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.4e-10 Score=114.21 Aligned_cols=57 Identities=35% Similarity=0.782 Sum_probs=49.0
Q ss_pred cccCCCCCCcceeecccccCCCc--eEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 242 ELALHPEDSDCCICLSQYVDGAE--LYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 242 ~~~~~~ed~~C~ICL~~y~~~~~--lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++.....+..|.||++++..++. .+.|||+|.||..|+.+|+++.++||+||..+..
T Consensus 284 ~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 284 ERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred HhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 33455568899999999988765 7899999999999999999999999999995543
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=3.4e-10 Score=72.77 Aligned_cols=39 Identities=44% Similarity=1.033 Sum_probs=33.8
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlC 292 (303)
|+||++.+.+ .+..++|||.|+.+|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 7899998877 46789999999999999999999999998
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.87 E-value=1.5e-09 Score=71.61 Aligned_cols=44 Identities=27% Similarity=0.724 Sum_probs=39.5
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~ 294 (303)
.|.||+++|.++...+.++|||.|+.+|+.+.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999977777899999999999999999866789999985
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.83 E-value=1.7e-09 Score=93.77 Aligned_cols=52 Identities=31% Similarity=0.748 Sum_probs=38.9
Q ss_pred CCCCCcceeecccccCC-----CceEEeC-CCCccChhhHHHHHhcC------CCCcccccCcc
Q 022069 246 HPEDSDCCICLSQYVDG-----AELYTLP-CNHHFHCGCISKWLRIN------ATCPLCKYNIR 297 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~-----~~lr~Lp-C~H~FH~~CI~~WL~~~------~tCPlCR~~I~ 297 (303)
..++.+|+||++..-+. ..-..|+ |+|.||..||++|.+.+ .+||+||....
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 44568899999986332 1234554 99999999999999753 35999998653
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.4e-09 Score=89.70 Aligned_cols=51 Identities=27% Similarity=0.635 Sum_probs=44.5
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
-..|+|||+.|++... .-+.|||+|+++||+.-++....||+|++.|.+++
T Consensus 131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3679999999988744 35789999999999999999999999999887664
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.76 E-value=7.4e-09 Score=73.34 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=43.5
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..|+||.+-++++ ..+||||.|...||.+|++.+.+||.|+.++..++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 4699999999886 678999999999999999999999999999866554
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=6.2e-09 Score=65.54 Aligned_cols=38 Identities=50% Similarity=1.154 Sum_probs=33.0
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlC 292 (303)
|+||++. ......+||+|.||..|+++|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899888 34568899999999999999998 66789987
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.73 E-value=3.8e-09 Score=68.45 Aligned_cols=39 Identities=46% Similarity=1.129 Sum_probs=34.3
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHh--cCCCCccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLR--INATCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~--~~~tCPlC 292 (303)
|+||++.+.++. +.++|+|.|+.+|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999988763 5889999999999999998 55689998
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.67 E-value=9.4e-09 Score=67.13 Aligned_cols=38 Identities=37% Similarity=0.954 Sum_probs=30.3
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlC 292 (303)
|+||++-|.++ ..|+|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 889999999999999999764 369988
No 22
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.1e-09 Score=92.35 Aligned_cols=53 Identities=40% Similarity=0.770 Sum_probs=44.6
Q ss_pred CCCCCcceeecccccCCC-------ceEEeCCCCccChhhHHHHH--hcCCCCcccccCccC
Q 022069 246 HPEDSDCCICLSQYVDGA-------ELYTLPCNHHFHCGCISKWL--RINATCPLCKYNIRR 298 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~-------~lr~LpC~H~FH~~CI~~WL--~~~~tCPlCR~~I~~ 298 (303)
..+|..|++|-..+.... +..+|.|+|.||..||+.|- -++++||-||..+.-
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 346788999998886554 67899999999999999995 678999999987753
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.9e-08 Score=94.62 Aligned_cols=51 Identities=27% Similarity=0.817 Sum_probs=40.7
Q ss_pred CCCcceeecccccCC---C-----------ceEEeCCCCccChhhHHHHHh-cCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDG---A-----------ELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~---~-----------~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~ 298 (303)
...+|+||+.+.+-. . .-..+||+|+||..|+.+|+. .+-.||.||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346799999987521 1 123579999999999999999 67799999999875
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.57 E-value=4.1e-08 Score=71.34 Aligned_cols=44 Identities=34% Similarity=0.618 Sum_probs=32.9
Q ss_pred eecccccCCCce--EEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 254 ICLSQYVDGAEL--YTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 254 ICL~~y~~~~~l--r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
-|-....++++. ..=.|+|.||..||.+||+.+..||++|+...
T Consensus 36 eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 36 ECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 333333345543 33349999999999999999999999998754
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.56 E-value=4.2e-08 Score=66.19 Aligned_cols=42 Identities=31% Similarity=0.796 Sum_probs=33.5
Q ss_pred cceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccc
Q 022069 251 DCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCK 293 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR 293 (303)
.|-||++ .+++++...+||. |.+|.+|+++|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999 4445555689985 999999999999554 5899995
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=4.4e-08 Score=93.31 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=43.8
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
.....|+||++.|.+. ..+||+|.||..||..|+.....||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 3567899999999776 5789999999999999999888999999988654
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.8e-08 Score=85.44 Aligned_cols=53 Identities=26% Similarity=0.676 Sum_probs=45.8
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHH-HHhcCCC-CcccccCccCCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK-WLRINAT-CPLCKYNIRRGDTL 302 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~-WL~~~~t-CPlCR~~I~~~~~i 302 (303)
..|..|.||++..+.. ..+||||+|+..||-. |-+++.. ||+||+.+.+++.+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~vi 267 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVI 267 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhh
Confidence 4578899999987765 8899999999999999 9877766 99999998877765
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.5e-08 Score=71.14 Aligned_cols=49 Identities=35% Similarity=0.845 Sum_probs=37.1
Q ss_pred CCcceeeccccc--------CCCceE-Ee-CCCCccChhhHHHHHhc---CCCCcccccCcc
Q 022069 249 DSDCCICLSQYV--------DGAELY-TL-PCNHHFHCGCISKWLRI---NATCPLCKYNIR 297 (303)
Q Consensus 249 d~~C~ICL~~y~--------~~~~lr-~L-pC~H~FH~~CI~~WL~~---~~tCPlCR~~I~ 297 (303)
+..|.||...|+ ++|..- .+ .|.|.||..||.+|+.. ++.||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 448999999987 233322 23 39999999999999965 367999998754
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.23 E-value=6.3e-07 Score=84.91 Aligned_cols=52 Identities=35% Similarity=0.928 Sum_probs=42.8
Q ss_pred cCCCCCCcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 244 ALHPEDSDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 244 ~~~~ed~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
....|-.+|++||+.+.+.. .++...|.|.||..|+.+| -..+||+||.--.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 34456789999999998764 4566779999999999999 5689999998655
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.17 E-value=6.3e-07 Score=65.70 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=40.8
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT 301 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~ 301 (303)
+...|+|+.+-+.++ ..+|+||.|-..||.+|++. +.+||+|+.++..++.
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 456799999999997 78999999999999999998 8899999999877654
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.15 E-value=4.1e-07 Score=66.13 Aligned_cols=49 Identities=33% Similarity=0.798 Sum_probs=23.6
Q ss_pred CCcceeecccccCCCce--EEe---CCCCccChhhHHHHHhc-----------CCCCcccccCcc
Q 022069 249 DSDCCICLSQYVDGAEL--YTL---PCNHHFHCGCISKWLRI-----------NATCPLCKYNIR 297 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~l--r~L---pC~H~FH~~CI~~WL~~-----------~~tCPlCR~~I~ 297 (303)
+.+|.||.+...++++. ..- .|++.||..|+.+||+. ..+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 35799999987633322 222 48999999999999953 135999999874
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.15 E-value=9.7e-07 Score=57.76 Aligned_cols=38 Identities=32% Similarity=0.770 Sum_probs=22.7
Q ss_pred ceeecccccCC-CceEEeCCCCccChhhHHHHHhcCC----CCc
Q 022069 252 CCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINA----TCP 290 (303)
Q Consensus 252 C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~----tCP 290 (303)
|+||.+ |.++ ...+.|||||.|..+|++++++.+. .||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7554 4558899999999999999998542 576
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1e-06 Score=84.90 Aligned_cols=50 Identities=30% Similarity=0.648 Sum_probs=41.1
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-----CCCcccccCccCCCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-----ATCPLCKYNIRRGDT 301 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~~~ 301 (303)
+..|+|||+...-. ..+.|||+||..||-+.+... ..||+||..|..+|.
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 78899999986655 455599999999999988654 579999999887664
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.07 E-value=1e-06 Score=80.71 Aligned_cols=48 Identities=31% Similarity=0.737 Sum_probs=43.3
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
..|-||.+-|..+ ..+||+|.||.-||+..|..+..||+|+.++.+.+
T Consensus 24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 4699999998887 88999999999999999999999999999876543
No 35
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.05 E-value=9.9e-07 Score=89.80 Aligned_cols=50 Identities=30% Similarity=0.784 Sum_probs=37.4
Q ss_pred CCCcceeeccccc-CC-C-ceEEeC-CCCccChhhHHHHHhcC--CCCcccccCcc
Q 022069 248 EDSDCCICLSQYV-DG-A-ELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~-~~-~-~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~ 297 (303)
...+|+||..-.. .+ . +-...| |.|-||..|+.+|++.. .+||+||.++.
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4578999987765 12 1 112333 88999999999999874 68999998875
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.3e-06 Score=77.55 Aligned_cols=49 Identities=33% Similarity=0.776 Sum_probs=41.6
Q ss_pred CCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++..+|.||+++-.+ ...|||+|. .|+.|-+.-.-++..||+||+++.+
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 456789999998555 589999999 8999999977678899999999853
No 37
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.2e-06 Score=65.46 Aligned_cols=48 Identities=35% Similarity=0.753 Sum_probs=35.7
Q ss_pred CCcceeeccccc------------CCCce--EEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 249 DSDCCICLSQYV------------DGAEL--YTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~------------~~~~l--r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
-+.|+||..-+- ..++. .-=-|+|.||.-||.+||+++..||||.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 467999875431 12232 2334999999999999999999999997764
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.86 E-value=7e-06 Score=73.92 Aligned_cols=44 Identities=27% Similarity=0.610 Sum_probs=40.0
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
..|-||-+.+..+ .+++|||-||.-||+.-|..+..||+||.+-
T Consensus 26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 4699999888876 7889999999999999999999999999864
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.1e-06 Score=74.84 Aligned_cols=46 Identities=30% Similarity=0.774 Sum_probs=40.8
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~ 294 (303)
..+...|+||++.|.+. +.+||+|.|+..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34667899999999998 89999999999999999886678999993
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.75 E-value=7.9e-06 Score=73.89 Aligned_cols=51 Identities=27% Similarity=0.852 Sum_probs=43.8
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHh-----------------------cCCCCcccccCccCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-----------------------INATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-----------------------~~~tCPlCR~~I~~~ 299 (303)
...|.|||-.|.+++....++|.|.||..|+.+.|. ..+.||+||..|..+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 356999999999999999999999999999998872 124699999988654
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.74 E-value=9.4e-06 Score=81.48 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=43.9
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
..|++||..+.++.....-+|+|.||..||+.|-+.-.+||+||....+-
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 45999999998887777788999999999999999999999999876543
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=9.9e-06 Score=54.78 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=34.0
Q ss_pred CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHh-cCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLR-INATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~-~~~tCPlCR~~I~ 297 (303)
.+++|.||.+.-.+. ....|||+ .+-+|-.+-.+ .+..||+||++|.
T Consensus 6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 347899997764332 44569998 66777655444 7899999999874
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=4e-05 Score=71.94 Aligned_cols=50 Identities=34% Similarity=0.881 Sum_probs=39.2
Q ss_pred CCCCcceeecccccCCC----ceEEeC-CCCccChhhHHHHH--hc-----CCCCcccccCc
Q 022069 247 PEDSDCCICLSQYVDGA----ELYTLP-CNHHFHCGCISKWL--RI-----NATCPLCKYNI 296 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CI~~WL--~~-----~~tCPlCR~~I 296 (303)
..+.+|.||++...+.. ..+.|| |.|.|+..||++|- ++ +..||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 46788999999876543 134557 99999999999998 33 46899999764
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=2.6e-05 Score=72.18 Aligned_cols=49 Identities=37% Similarity=0.629 Sum_probs=40.8
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhc-CCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI-NATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 299 (303)
.+..|+|||+-+..- +..+ |.|-|+.+||.+-++. +.+||.||+.+..+
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 456799999987765 6666 9999999999999865 68999999987654
No 45
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.26 E-value=0.00018 Score=76.45 Aligned_cols=54 Identities=31% Similarity=0.718 Sum_probs=45.0
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----------CCCcccccCccC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----------ATCPLCKYNIRR 298 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----------~tCPlCR~~I~~ 298 (303)
....|+.|-||+.+--...+..+|.|+|+||..|.++-|.+. -+||+|+.+|.+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 444577899999988777888999999999999999887653 369999998753
No 46
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.24 E-value=7.6e-05 Score=69.87 Aligned_cols=45 Identities=33% Similarity=0.721 Sum_probs=38.2
Q ss_pred CcceeecccccC-CCceEEeCCCCccChhhHHHHHhcC--CCCccccc
Q 022069 250 SDCCICLSQYVD-GAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~-~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~ 294 (303)
-.|..|-+.|-. ++.+-.|||.|+||..|+.+.|.+| .+||-||+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 459999998854 4567889999999999999999877 47999983
No 47
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.23 E-value=9.9e-05 Score=69.27 Aligned_cols=51 Identities=25% Similarity=0.779 Sum_probs=42.0
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcccccCccCCCCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCKYNIRRGDTLV 303 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~~i~ 303 (303)
..|.||-+. +..++.=||||..|..|+..|-.. .++||.||.+|...+.++
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 459999664 556789999999999999999844 579999999998776553
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00017 Score=69.01 Aligned_cols=49 Identities=27% Similarity=0.775 Sum_probs=43.4
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..+.+|+||...+.+. ..+||||.|+..||++-+..+..||+||.++.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 5678899998888877 677999999999999999989999999998764
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.19 E-value=0.00011 Score=51.87 Aligned_cols=47 Identities=26% Similarity=0.623 Sum_probs=23.8
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
-.|++|.+-+.++ +....|.|.|++.||..-+. ..||+|+.+--..|
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4599999887765 44556999999999988443 56999998875554
No 50
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.94 E-value=0.00034 Score=56.66 Aligned_cols=36 Identities=19% Similarity=0.546 Sum_probs=31.6
Q ss_pred CCcceeecccccCCCceEEeCCC------CccChhhHHHHHh
Q 022069 249 DSDCCICLSQYVDGAELYTLPCN------HHFHCGCISKWLR 284 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~------H~FH~~CI~~WL~ 284 (303)
..+|+||++...+++.+..++|+ |+||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 46899999999997778888887 9999999999943
No 51
>PHA02862 5L protein; Provisional
Probab=96.90 E-value=0.00069 Score=55.29 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=33.9
Q ss_pred CCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhc--CCCCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRI--NATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~--~~tCPlCR~~I 296 (303)
++.|=||.++.+++ .-||+ ..-|.+|+.+|++. +..||+||.+.
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 35799999985443 35654 67899999999965 46899999865
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.82 E-value=0.00064 Score=65.50 Aligned_cols=54 Identities=28% Similarity=0.679 Sum_probs=44.8
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..++..|++|.....++-.. +.|||.|+..|+.+|+..+..||.|+.++...+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 34667899999999887222 5899999999999999999999999988765543
No 53
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.81 E-value=0.00059 Score=45.52 Aligned_cols=40 Identities=33% Similarity=0.900 Sum_probs=27.8
Q ss_pred ceeecccccCCCceEEeCCC-----CccChhhHHHHHhc--CCCCccc
Q 022069 252 CCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRI--NATCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~--~~tCPlC 292 (303)
|-||+++-++++ ....||+ ..-|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678999877765 3467864 47899999999964 5679988
No 54
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0016 Score=56.97 Aligned_cols=54 Identities=26% Similarity=0.571 Sum_probs=43.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--------CCCCcccccCccCCCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--------NATCPLCKYNIRRGDTL 302 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~~i 302 (303)
.+..|..|-...+.+|.+ .|-|-|.||.+|+++|-.. .-.||-|..+|.+.-.+
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 456799999999998765 6889999999999999743 23699999998775443
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.62 E-value=0.00074 Score=46.94 Aligned_cols=41 Identities=24% Similarity=0.587 Sum_probs=29.0
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcc
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPL 291 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPl 291 (303)
...|+|.+..++++ ++...|+|.|-++.|.++++. ...||.
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46799999998876 777789999999999999944 457998
No 56
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00053 Score=69.47 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.6
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT 301 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~ 301 (303)
--.|+.|-....+. ....|+|.||.+||.+-+.. ...||.|.++....|.
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 35799998665553 45569999999999999865 4689999999988875
No 57
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.00078 Score=55.94 Aligned_cols=39 Identities=28% Similarity=0.615 Sum_probs=34.1
Q ss_pred CcccccCCCCCCcceeecccccCCCceEEeCCCCccChh
Q 022069 239 STDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCG 277 (303)
Q Consensus 239 ~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~ 277 (303)
++.+..+..+..||.|||++++.++.+..|||--+||+.
T Consensus 167 sYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK~ 205 (205)
T KOG0801|consen 167 SYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHKQ 205 (205)
T ss_pred ccccchhcccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence 455667777889999999999999999999999999973
No 58
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.58 E-value=0.002 Score=53.60 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=34.5
Q ss_pred CCCCCcceeecccccCCCceEEeCCC--C---ccChhhHHHHHhc--CCCCcccccCc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCN--H---HFHCGCISKWLRI--NATCPLCKYNI 296 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I 296 (303)
+..+.+|=||.++..+ . .-||. . .-|.+|+++|+.. +.+||+|+++.
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3456789999988542 2 24754 4 5699999999965 45799998865
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0042 Score=58.93 Aligned_cols=47 Identities=32% Similarity=0.736 Sum_probs=38.0
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--------CCCccccc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--------ATCPLCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--------~tCPlCR~ 294 (303)
.-.+|+||+++..-.+-...|||+|+|++.|....+.+. -.||-++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 346799999987666788999999999999999998543 35887653
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.79 E-value=0.0031 Score=54.19 Aligned_cols=44 Identities=23% Similarity=0.491 Sum_probs=38.9
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
..|.||-.+|+.+ ..+.|||+|+..|..+=++...+|-.|-+..
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 4799999999997 6788999999999999888899999996643
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.79 E-value=0.0038 Score=41.65 Aligned_cols=45 Identities=20% Similarity=0.528 Sum_probs=21.6
Q ss_pred ceeecccccCCC-ceEEeCCCCccChhhHHHHHh-cCCCCcccccCc
Q 022069 252 CCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLR-INATCPLCKYNI 296 (303)
Q Consensus 252 C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I 296 (303)
|++|.++....+ ...--+|++..+..|...-++ .+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 678888883332 333344889999999888775 478999999863
No 62
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.79 E-value=0.0047 Score=63.28 Aligned_cols=50 Identities=34% Similarity=0.815 Sum_probs=38.6
Q ss_pred CCCCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcC-------CCCccccc
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRIN-------ATCPLCKY 294 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~-------~tCPlCR~ 294 (303)
+.....+|.||.+.+..-+.+=-- .|-|+||..||.+|.+.. =.||-|+.
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 344557899999998877665333 399999999999998652 15999984
No 63
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.013 Score=52.98 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=39.9
Q ss_pred ccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcccccCcc
Q 022069 243 LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKYNIR 297 (303)
Q Consensus 243 ~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~~I~ 297 (303)
++....+.+|++|-+.=.. +....||+|+||-.||..=.... -+||.|-.++.
T Consensus 233 ss~~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3445578899999776332 34566799999999999976543 58999988775
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.76 E-value=0.0041 Score=48.29 Aligned_cols=35 Identities=26% Similarity=0.710 Sum_probs=29.0
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHH
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK 281 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~ 281 (303)
-.++..|++|-..+.+ ......||||.||..|+++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence 3456779999999877 5678899999999999763
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.0098 Score=52.81 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=49.4
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i 302 (303)
....|++|.+.+.+...+..|. |||+|..+|+++.++.-..||+|-.++.++|.|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 5577999999999988887775 999999999999999999999999999888765
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0099 Score=55.60 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=33.9
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
.+....|.||+++..+ ...+||||+-+ |..-- +...+||+||..|.
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3445679999998666 48899999955 65543 34556999998774
No 67
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.00094 Score=62.69 Aligned_cols=50 Identities=24% Similarity=0.628 Sum_probs=45.1
Q ss_pred CCcceeecccccCC-CceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
...|+||...|... +.+..+-|||.+|.+|+.+||.....||.|++.+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 35699999999887 788899999999999999999999999999998764
No 68
>PHA03096 p28-like protein; Provisional
Probab=95.12 E-value=0.0097 Score=54.77 Aligned_cols=44 Identities=27% Similarity=0.448 Sum_probs=32.7
Q ss_pred CcceeecccccCCC----ceEEeC-CCCccChhhHHHHHhcC---CCCcccc
Q 022069 250 SDCCICLSQYVDGA----ELYTLP-CNHHFHCGCISKWLRIN---ATCPLCK 293 (303)
Q Consensus 250 ~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CI~~WL~~~---~tCPlCR 293 (303)
.+|.||++...+.. .-..|+ |.|.|+..|++.|...+ .+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 67999999876532 335688 99999999999998543 3455554
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.02 E-value=0.013 Score=40.07 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=34.7
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
.|..|... +..-..+||+|.-...|.+.+ +-+-||+|-+++..++.
T Consensus 9 ~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 45555444 333478999999999997764 66789999999887763
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.97 E-value=0.0096 Score=58.13 Aligned_cols=48 Identities=27% Similarity=0.680 Sum_probs=37.8
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHh-----cCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-----INATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-----~~~tCPlCR~~I~~ 298 (303)
+..+|.+|-+.-++. .+..|.|.||.-||.+... .+-+||.|...+.-
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 456799998875544 7888999999999998873 35799999876643
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.0086 Score=54.53 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=40.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
..|-||...|.++ ..+.|+|.|+..|--+=++....|++|-+++-
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccc
Confidence 4599999999998 78889999999999998898999999987653
No 72
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.017 Score=54.79 Aligned_cols=32 Identities=41% Similarity=0.975 Sum_probs=25.9
Q ss_pred ceEEeCCCCccChhhHHHHHhc--CCCCcccccC
Q 022069 264 ELYTLPCNHHFHCGCISKWLRI--NATCPLCKYN 295 (303)
Q Consensus 264 ~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~ 295 (303)
.+..+.|||.|-.+||++||.+ +..||.|+..
T Consensus 21 r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 21 RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 4556779999999999999953 3579999754
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.018 Score=53.73 Aligned_cols=48 Identities=31% Similarity=0.622 Sum_probs=41.4
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
.||..|+||... +..-...||+|.=+..||.+-+-+++.|=.||+.+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 578889999655 444478899999999999999999999999999775
No 74
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.76 E-value=0.008 Score=55.55 Aligned_cols=51 Identities=29% Similarity=0.639 Sum_probs=40.9
Q ss_pred CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
.+...+|.+|-.-+-+. ...+ |-|-||+.||.+.|..+.+||.|...|-+.
T Consensus 12 ~n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34567899997776665 3334 999999999999999999999998776543
No 75
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.86 E-value=0.073 Score=44.40 Aligned_cols=37 Identities=24% Similarity=0.589 Sum_probs=24.3
Q ss_pred CCCcceeecccccCCCce---------EEeCCC-CccChhhHHHHHh
Q 022069 248 EDSDCCICLSQYVDGAEL---------YTLPCN-HHFHCGCISKWLR 284 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~l---------r~LpC~-H~FH~~CI~~WL~ 284 (303)
||..|+|||+-=.+...+ |-.-|+ -.=|..|+|+.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 578899999875554222 122254 3468999999764
No 76
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.59 E-value=0.036 Score=50.58 Aligned_cols=45 Identities=27% Similarity=0.648 Sum_probs=35.0
Q ss_pred CcceeecccccCCCceEEeC-CCCccChhhHHHHH-hcCCCCccc-ccCcc
Q 022069 250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL-RINATCPLC-KYNIR 297 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL-~~~~tCPlC-R~~I~ 297 (303)
..|+.|-.-..+. ..+| |+|.|+.+||..-| .....||.| |++++
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 5699988776665 5667 89999999999876 455789999 54554
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.19 E-value=0.14 Score=47.78 Aligned_cols=48 Identities=27% Similarity=0.682 Sum_probs=36.3
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHH--HhcCCCCcccccCc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKW--LRINATCPLCKYNI 296 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~W--L~~~~tCPlCR~~I 296 (303)
.++...|.||-....- ...+||+|..+--|--+- |..+..||+||..-
T Consensus 58 DEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3445569999877544 378999999998897653 46678999999853
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.14 E-value=0.047 Score=49.89 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=38.6
Q ss_pred CcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069 250 SDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~ 294 (303)
..|+||.+.+.+.. .+..++|||.-|..|..+-...+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999998876654 4578999999999999999888899999987
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.03 E-value=0.094 Score=47.76 Aligned_cols=55 Identities=16% Similarity=0.396 Sum_probs=44.1
Q ss_pred CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i 302 (303)
.....|+|...++........+ ||||+|-..++++- +....||+|-.+....|.|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence 3456799999999666655555 79999999999996 3456899999998877765
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.23 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.516 Sum_probs=38.4
Q ss_pred CCCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCc
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
..++...|++|+..-.++ ..+. =|-+||-.||-+.++....||+=-.+.
T Consensus 296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 445667899999986665 3444 489999999999999999999865443
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.016 Score=52.77 Aligned_cols=43 Identities=28% Similarity=0.649 Sum_probs=32.2
Q ss_pred CCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
+..|+||++. +-+...|+|||. =+.+|-.+ -+.||+||+-|.+
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6779999887 455689999998 35556544 2489999987654
No 82
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.66 E-value=0.094 Score=48.58 Aligned_cols=49 Identities=31% Similarity=0.668 Sum_probs=37.9
Q ss_pred CCcceeecccccCCCc-eEEeCCC-----CccChhhHHHHHh--cCCCCcccccCcc
Q 022069 249 DSDCCICLSQYVDGAE-LYTLPCN-----HHFHCGCISKWLR--INATCPLCKYNIR 297 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~-lr~LpC~-----H~FH~~CI~~WL~--~~~tCPlCR~~I~ 297 (303)
+..|-||..+.++... ..+.||. +..|..|+++|+. .+.+|..|+....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5789999998765432 4677875 7789999999997 5568999987554
No 83
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.089 Score=46.30 Aligned_cols=40 Identities=28% Similarity=0.620 Sum_probs=29.8
Q ss_pred ceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 252 CCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
|-.|-++ +..+..+||.|+ ++..|=+. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8788554 666899999987 77778554 3569999987543
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.094 Score=44.48 Aligned_cols=47 Identities=34% Similarity=0.815 Sum_probs=31.9
Q ss_pred cceeecccccCCC----ceEEeCCCCccChhhHHHHHhcC-----------CCCcccccCcc
Q 022069 251 DCCICLSQYVDGA----ELYTLPCNHHFHCGCISKWLRIN-----------ATCPLCKYNIR 297 (303)
Q Consensus 251 ~C~ICL~~y~~~~----~lr~LpC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~ 297 (303)
.|.||..---+|. ..--..||.-||.-|+..||+.- ..||.|..+|.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4666654322322 12235699999999999999631 46999988874
No 85
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.20 E-value=0.11 Score=46.54 Aligned_cols=48 Identities=27% Similarity=0.791 Sum_probs=33.2
Q ss_pred CCcceeecccccCCCce-EEeCC-----CCccChhhHHHHHhcCC--------CCcccccCc
Q 022069 249 DSDCCICLSQYVDGAEL-YTLPC-----NHHFHCGCISKWLRINA--------TCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~l-r~LpC-----~H~FH~~CI~~WL~~~~--------tCPlCR~~I 296 (303)
+..|-||+..=+|+..- =.=|| .|.-|..|+.+|+..+. +||-|+++.
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 34466999885554221 13355 39999999999995432 599998764
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.63 E-value=0.064 Score=55.16 Aligned_cols=47 Identities=30% Similarity=0.740 Sum_probs=37.9
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcccccCccCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCKYNIRRGD 300 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~ 300 (303)
..|.||++ .+.....+|+|.|+.+|+.+-+.. ++.||+||..+..++
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 445678999999999999988754 356999998775543
No 87
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.56 E-value=0.18 Score=51.84 Aligned_cols=53 Identities=25% Similarity=0.743 Sum_probs=39.8
Q ss_pred CCCCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~ 300 (303)
++++.|-||..+=.+++++ -=||+ ...|.+|+.+|+.-. ..|-+|++++.-++
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3567899999987666654 34543 568999999999654 46999999876544
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=0.15 Score=52.77 Aligned_cols=42 Identities=24% Similarity=0.629 Sum_probs=33.7
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
..|..|-...+-+ ..-..|+|.||..|+. +....||-|+.+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 5799998876654 5566799999999999 5667899998743
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.95 E-value=0.098 Score=34.07 Aligned_cols=41 Identities=29% Similarity=0.719 Sum_probs=20.3
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcCC--CCccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA--TCPLC 292 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~--tCPlC 292 (303)
|.+|-+-...|+.-..-.|+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 334444444442221223888899999999997765 79987
No 90
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=0.14 Score=53.21 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=28.6
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL 283 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL 283 (303)
.+..|.+|...+... +-..-||||.||.+|+.+=.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 456799998887654 56789999999999998765
No 91
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.18 Score=50.88 Aligned_cols=51 Identities=31% Similarity=0.832 Sum_probs=41.9
Q ss_pred cCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 244 ALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 244 ~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
........|.||+.+. ..|..+|. |..|+.+|+..+..||+|+..+..++.
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3444567799999987 45788899 999999999999999999887766553
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.04 E-value=0.43 Score=45.39 Aligned_cols=28 Identities=25% Similarity=0.852 Sum_probs=21.7
Q ss_pred CCCccChhhHHHHHhc-------------CCCCcccccCcc
Q 022069 270 CNHHFHCGCISKWLRI-------------NATCPLCKYNIR 297 (303)
Q Consensus 270 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~I~ 297 (303)
|.-+.|.+|+.+|+-. +.+||+||+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 5577889999999832 357999999754
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.15 Score=46.91 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=32.2
Q ss_pred ccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 243 LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 243 ~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
+.+.+..-.|--|=-. -.---|..||+|+||.+|-+. ..-..||+|-..|.
T Consensus 84 k~l~p~VHfCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred cccCcceEeecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3333334445556322 222348899999999999654 33568999976554
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=88.45 E-value=0.55 Score=32.10 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=34.4
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcc--cccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPL--CKYN 295 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPl--CR~~ 295 (303)
+...|.+|-+.+.+++.+..-| |+-.+|.+|-++ ...|-. |.++
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 3456999999999888888998 999999999554 455654 5443
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.35 E-value=0.17 Score=33.45 Aligned_cols=33 Identities=21% Similarity=0.617 Sum_probs=23.6
Q ss_pred EeCCC-CccChhhHHHHHhcCCCCcccccCccCC
Q 022069 267 TLPCN-HHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 267 ~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
...|+ |..+..|+..-+.+...||+|+.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45686 9999999999999999999999988753
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.90 E-value=0.18 Score=51.39 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=40.4
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~ 299 (303)
...+|.||+..|.++ ..+.|.|.|...|+..-+... ..||+|+..+.+.
T Consensus 20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 457899999999887 677899999999988876443 4799999877654
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.59 E-value=0.52 Score=43.98 Aligned_cols=52 Identities=19% Similarity=0.535 Sum_probs=36.2
Q ss_pred CCCcceeecccccCCCc-eEEeCCCCccChhhHHHHH-hcCCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~ 299 (303)
|++-|+.|+++++-.|. ..-.|||-..|.-|-..-- ..|.+||-||+...++
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 44559999999875543 4567799777777754432 2468999999865443
No 98
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.79 E-value=0.22 Score=50.00 Aligned_cols=43 Identities=35% Similarity=0.664 Sum_probs=33.6
Q ss_pred CcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCcccccC
Q 022069 250 SDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295 (303)
Q Consensus 250 ~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~ 295 (303)
..|.||+..|.... +.+-|-|||.-+..|+..- .|++|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 56889999887654 3356669999999999874 578999 7664
No 99
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.90 E-value=0.81 Score=47.19 Aligned_cols=52 Identities=10% Similarity=0.152 Sum_probs=38.2
Q ss_pred CCCCCcceeecccccCC-CceEEeC---CCCccChhhHHHHHhc------CCCCcccccCcc
Q 022069 246 HPEDSDCCICLSQYVDG-AELYTLP---CNHHFHCGCISKWLRI------NATCPLCKYNIR 297 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~-~~lr~Lp---C~H~FH~~CI~~WL~~------~~tCPlCR~~I~ 297 (303)
..+...|.+|..++.++ +..-.+| |+|.|+..||..|..+ +-.||+|...+.
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34455677777777663 3345666 9999999999999943 457999988764
No 100
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.82 E-value=0.32 Score=52.52 Aligned_cols=46 Identities=30% Similarity=0.619 Sum_probs=38.6
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
...|.||++...+. -....|||-+++.|...|++.+..||.|+...
T Consensus 1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 45799999988732 15677999999999999999999999998543
No 101
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.70 E-value=0.83 Score=46.91 Aligned_cols=39 Identities=31% Similarity=0.796 Sum_probs=28.6
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPL 291 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPl 291 (303)
|.||--... +.-.....|+|+-|..|...|+++...||.
T Consensus 1031 C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 666543322 223345679999999999999999999984
No 102
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.66 E-value=0.9 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.565 Sum_probs=35.2
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
.+-.+|+||...+..+ +.+-+=||.-+..|=. +.+..||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P--i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP--IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc--ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3457899999999886 3333336888888865 46789999999886
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.07 E-value=0.58 Score=42.81 Aligned_cols=28 Identities=29% Similarity=0.743 Sum_probs=22.2
Q ss_pred CCCccChhhHHHHH-------------hcCCCCcccccCcc
Q 022069 270 CNHHFHCGCISKWL-------------RINATCPLCKYNIR 297 (303)
Q Consensus 270 C~H~FH~~CI~~WL-------------~~~~tCPlCR~~I~ 297 (303)
|.-..+.+|+.+|+ +.+.+||.||++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 56778889999987 23578999999764
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.25 E-value=0.61 Score=41.52 Aligned_cols=47 Identities=30% Similarity=0.747 Sum_probs=36.1
Q ss_pred CCCcceeeccc-ccCCC-ceEEeC-CCCccChhhHHHHHhcC-CCCc--cccc
Q 022069 248 EDSDCCICLSQ-YVDGA-ELYTLP-CNHHFHCGCISKWLRIN-ATCP--LCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~-y~~~~-~lr~Lp-C~H~FH~~CI~~WL~~~-~tCP--lCR~ 294 (303)
+|..|++|-.+ |-+++ .+..-| |-|..|..|+++-+... +.|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 56789999877 44443 455567 99999999999999764 6899 7744
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=1.5 Score=41.86 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=39.0
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC---CCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA---TCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~---tCPlCR~~I 296 (303)
-..|+|=-+.-.++.+...|.|||+-.++-+.+--+... .||-|=.+.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 467999888888888899999999999999999665433 599995443
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.79 E-value=0.89 Score=43.82 Aligned_cols=39 Identities=21% Similarity=0.636 Sum_probs=29.1
Q ss_pred CCCcceeecccccCC-CceEEeCCCCccChhhHHHHHhcC
Q 022069 248 EDSDCCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRIN 286 (303)
Q Consensus 248 ed~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~ 286 (303)
...+|.||..++..+ +......|+|.|+.+|+.+-+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 356799999555444 444556699999999999888643
No 107
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=77.01 E-value=2.7 Score=38.19 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=35.6
Q ss_pred CCcceeecccccCCCceEEe---C-CCCccChhhHHHHHhc---------CCCCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTL---P-CNHHFHCGCISKWLRI---------NATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L---p-C~H~FH~~CI~~WL~~---------~~tCPlCR~~I 296 (303)
..+|-+|.+++.+.+..+.. | |+-++|..|+..-+.. .+.||.|++-+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 35899999999655554432 2 9999999999994422 35799998754
No 108
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.92 E-value=0.95 Score=45.61 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=26.9
Q ss_pred CCcceeeccc-----ccCCCceEEeCCCCccChhhHHHHHhcCCCCccc
Q 022069 249 DSDCCICLSQ-----YVDGAELYTLPCNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 249 d~~C~ICL~~-----y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlC 292 (303)
...|-+|-.. |+.....+...|+++||.+|..+ .+..||-|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 3457788221 33333345666999999999655 55569999
No 109
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=74.60 E-value=1.6 Score=30.46 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=12.2
Q ss_pred CCCcccccCccCCCC
Q 022069 287 ATCPLCKYNIRRGDT 301 (303)
Q Consensus 287 ~tCPlCR~~I~~~~~ 301 (303)
..||+|+++..++..
T Consensus 40 p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 40 PVCPLCKSPMVSGTR 54 (59)
T ss_pred ccCCCcCCcccccee
Confidence 689999999877654
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.72 E-value=0.91 Score=46.83 Aligned_cols=44 Identities=20% Similarity=0.507 Sum_probs=33.2
Q ss_pred CCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCccc
Q 022069 248 EDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 248 ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlC 292 (303)
.+..|+-|++..... +.+..+.|+|+||+.|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 445799998876522 4578899999999999988776655 5555
No 111
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=73.31 E-value=2.6 Score=28.53 Aligned_cols=41 Identities=32% Similarity=0.864 Sum_probs=20.5
Q ss_pred ceeecccccCC------CceEEeC-CCCccChhhHHHHHhc-CCCCcccc
Q 022069 252 CCICLSQYVDG------AELYTLP-CNHHFHCGCISKWLRI-NATCPLCK 293 (303)
Q Consensus 252 C~ICL~~y~~~------~~lr~Lp-C~H~FH~~CI~~WL~~-~~tCPlCR 293 (303)
|--|+..+.++ ....+-| |+++|+.+| |..... =.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 44455555554 2345566 999999999 555433 35799884
No 112
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.01 E-value=3.6 Score=37.03 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCCCC
Q 022069 249 DSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i~ 303 (303)
...|+|=--++........+ +|||+|-..-+.+- ...+|++|.+....+|.|+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEe
Confidence 45688877776665554444 59999998887773 3678999999999888774
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.93 E-value=3.3 Score=38.10 Aligned_cols=32 Identities=31% Similarity=0.641 Sum_probs=26.8
Q ss_pred eEEeCCCCccChhhHHHHHhcC-CCCcccccCc
Q 022069 265 LYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNI 296 (303)
Q Consensus 265 lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I 296 (303)
.|.|.|||.|+..|+.+-+... ..||.||.+.
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4778899999999999977554 5799999984
No 114
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.46 E-value=4.2 Score=33.05 Aligned_cols=50 Identities=24% Similarity=0.685 Sum_probs=34.6
Q ss_pred CCCcceeecccccCCCceEEe-C---CCCccChhhHHH-HH--hcCCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTL-P---CNHHFHCGCISK-WL--RINATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L-p---C~H~FH~~CI~~-WL--~~~~tCPlCR~~I~~~~ 300 (303)
.-.+|-||-+.-.|+ |-| | ||-..+-.|-.. |- ..++.||.||++....+
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 346899998886655 333 3 787777776554 53 34689999999876554
No 116
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=64.79 E-value=4.7 Score=35.25 Aligned_cols=40 Identities=30% Similarity=0.667 Sum_probs=27.1
Q ss_pred CCcceeeccc-----ccCCCceEEeCCCCccChhhHHHHHhcCCCCcccc
Q 022069 249 DSDCCICLSQ-----YVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293 (303)
Q Consensus 249 d~~C~ICL~~-----y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR 293 (303)
...|-+|-++ |+.+.-.+.-.|+-+||..|..+ ..||-|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4568888653 33323334444999999999762 6799994
No 117
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=64.31 E-value=7.5 Score=36.20 Aligned_cols=54 Identities=22% Similarity=0.525 Sum_probs=37.7
Q ss_pred CCCCCcceeeccccc---------------CCCc-eEEeCCCCccChhhHHHHHhc---------CCCCcccccCccCC
Q 022069 246 HPEDSDCCICLSQYV---------------DGAE-LYTLPCNHHFHCGCISKWLRI---------NATCPLCKYNIRRG 299 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~---------------~~~~-lr~LpC~H~FH~~CI~~WL~~---------~~tCPlCR~~I~~~ 299 (303)
...+.+|++|+..=. .+-. -.--||||+--.+-..-|-++ ++.||.|-+.+..+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 345678999986521 1111 124589999999999999865 46799998776544
No 118
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=3.7 Score=40.32 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=32.5
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN 286 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~ 286 (303)
...+.+|-||.+.+.. ....+.|+|.|+..|....+.++
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 3456789999999887 56778899999999999998653
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.29 E-value=7.9 Score=40.08 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPL 291 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPl 291 (303)
..+.|++|-..... .. ..-+ |+|.-|.+|+.+|+..+.-||.
T Consensus 778 a~~~CtVC~~vi~G-~~-~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 778 ASAKCTVCDLVIRG-VD-VWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hhcCceeecceeee-eE-eecccccccccHHHHHHHHhcCCCCcc
Confidence 45679999544322 11 2233 9999999999999999888877
No 120
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=63.24 E-value=3.4 Score=36.26 Aligned_cols=41 Identities=32% Similarity=0.892 Sum_probs=34.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlC 292 (303)
..|.+|-+-.-.+ +|.=.|+-.+|..|+.+.+.....||.|
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCch
Confidence 5699997765444 4566689999999999999999999999
No 121
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=60.13 E-value=4.1 Score=25.33 Aligned_cols=25 Identities=28% Similarity=0.576 Sum_probs=17.0
Q ss_pred cceeecccccCCCc--------eEEeCCCCccC
Q 022069 251 DCCICLSQYVDGAE--------LYTLPCNHHFH 275 (303)
Q Consensus 251 ~C~ICL~~y~~~~~--------lr~LpC~H~FH 275 (303)
+|+=|-..|+-+++ ++.-.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888875443 44445888875
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=57.40 E-value=2.6 Score=28.29 Aligned_cols=42 Identities=19% Similarity=0.448 Sum_probs=19.7
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-----CCcccccC
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-----TCPLCKYN 295 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-----tCPlCR~~ 295 (303)
.|+|....++- .+|--.|.|.-+- =++.|++.+. .||+|+++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 47776666544 4677789997321 1445664432 69999864
No 123
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=56.27 E-value=13 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=22.5
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
|..|-..+.+++.... .=+..||.+| -.|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcC
Confidence 6677777666533222 2367888877 4577777665
No 124
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=56.19 E-value=1.8 Score=29.39 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=6.7
Q ss_pred CCCcccccCccCC
Q 022069 287 ATCPLCKYNIRRG 299 (303)
Q Consensus 287 ~tCPlCR~~I~~~ 299 (303)
..||+|.+++.++
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 4899999987643
No 125
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=53.92 E-value=17 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.569 Sum_probs=25.6
Q ss_pred hhhccCCCCCCCchhhhHhHHH-hHHHhhhheeeeeeee
Q 022069 51 VLFSTLKEKPATPLRVWVSGYA-LQCFLHVGFVFFEYRR 88 (303)
Q Consensus 51 vl~~s~~e~p~~pl~~Wi~gy~-~~~~~~~~l~~~~~~~ 88 (303)
+.+.-....|..|+...+.+-. +-|+-+..|.+| ||+
T Consensus 47 i~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~W-YR~ 84 (118)
T PF10856_consen 47 ISAFVFPQDPPKPLHIFFAVCILLICISAILLIFW-YRQ 84 (118)
T ss_pred hheEEecCCCCCceEEehHHHHHHHHHHHHhheee-hhc
Confidence 3344466778889998887777 666666666666 555
No 126
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=52.62 E-value=4.2 Score=26.79 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=28.2
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhc------CCCCccccc
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI------NATCPLCKY 294 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~------~~tCPlCR~ 294 (303)
|.||-..-.+++.+.--.|+..||..|++.=.+. .=.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7788884444434444459999999998765431 235888853
No 127
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=51.84 E-value=6.5 Score=22.63 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=9.7
Q ss_pred ceeecccccCCCceEEeC-CCCcc
Q 022069 252 CCICLSQYVDGAELYTLP-CNHHF 274 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~Lp-C~H~F 274 (303)
|+-|-...... .+.-| |||.|
T Consensus 3 CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhh--cCcCCCCCCCC
Confidence 55554443222 23445 66655
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.94 E-value=5.7 Score=38.09 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=0.0
Q ss_pred CCcceeeccccc--------------CCC--ceEEeCCCCccChhhHHHHHhc---------CCCCcccccCccCC
Q 022069 249 DSDCCICLSQYV--------------DGA--ELYTLPCNHHFHCGCISKWLRI---------NATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~--------------~~~--~lr~LpC~H~FH~~CI~~WL~~---------~~tCPlCR~~I~~~ 299 (303)
+.+|++|+..-. +.. ...--||||+--.+...-|-+. ++.||.|-.++..+
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 678999996522 111 1234689999999999999865 35799998887643
No 129
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.26 E-value=8.4 Score=37.16 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=33.4
Q ss_pred CCcceeecccccCCCce--EEeCCCCccChhhHHHHHhcCCCCccc
Q 022069 249 DSDCCICLSQYVDGAEL--YTLPCNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~l--r~LpC~H~FH~~CI~~WL~~~~tCPlC 292 (303)
-..|+.|-..++..+.. ..-.|+|.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 45699988877655433 333499999999999999888888665
No 130
>COG3671 Predicted membrane protein [Function unknown]
Probab=46.32 E-value=73 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.486 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhh
Q 022069 149 LYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP-IVALVYAVA 192 (303)
Q Consensus 149 Lywl~ivfL~f~~~f~~~~i~l~~ii~i~ic~~lp-ii~~l~~~~ 192 (303)
-+|+++.+-..+..+..+.++++.+..+.+..... ++.+.|...
T Consensus 69 TFw~~vl~~iIg~Llt~lgiGv~i~~AlgvW~i~Riv~G~~yl~~ 113 (125)
T COG3671 69 TFWLAVLWWIIGLLLTFLGIGVVILVALGVWYIYRIVIGFKYLNE 113 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46777777666766666777777777777776666 445545443
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=45.64 E-value=16 Score=34.26 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=35.7
Q ss_pred CcceeecccccCCCceEEeC--CCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLP--CNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|+||-+.....+ .-.+| |+|.-|..|...-...+.+||.||++...
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 67999988763332 23445 78888888888877888999999987653
No 132
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.29 E-value=13 Score=22.49 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=7.8
Q ss_pred cCCCCcccccC
Q 022069 285 INATCPLCKYN 295 (303)
Q Consensus 285 ~~~tCPlCR~~ 295 (303)
....||.|.++
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44589999763
No 133
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.66 E-value=27 Score=27.63 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=30.8
Q ss_pred CcceeecccccCCC----------ceEEeC-CCCccChhhHHHHHhcCCCCcccc
Q 022069 250 SDCCICLSQYVDGA----------ELYTLP-CNHHFHCGCISKWLRINATCPLCK 293 (303)
Q Consensus 250 ~~C~ICL~~y~~~~----------~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR 293 (303)
..|--|...|.++. ...+-+ |+++|+.+|=.-+-+.=.+||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45888888876431 123344 999999999655555557899995
No 134
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=44.31 E-value=55 Score=30.13 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=55.5
Q ss_pred ccCCCCcccchHhHHHHHHH-------HHHHHHHHhhhhc-----cCCCCCCCchhhhHhHHHhHHHhhhheeeeeeeee
Q 022069 22 NCGSSSRFFSPIVFLDAIWN-------MAFVVVSVIVLFS-----TLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRK 89 (303)
Q Consensus 22 ~~~~~~~~s~~~v~~~~~~~-------l~~i~~~~~vl~~-----s~~e~p~~pl~~Wi~gy~~~~~~~~~l~~~~~~~~ 89 (303)
.|--||-.+-|++.+.+-|. ++.++++..+... +.... +.| | .=|++++++++..++.-+...
T Consensus 104 aRYIdWllttPllll~l~lla~~~~~ti~~~v~ad~~~iv~~laaa~~~~---tyk-W-~~y~ig~~a~lvvl~~l~~~~ 178 (285)
T COG5524 104 ARYIDWLLTTPLLLLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAALTHS---TYK-W-AYYAIGAAAFLVVLAVLVTGF 178 (285)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhch---hhh-H-HHHHHHHHHHHHHHHHHHhhh
Confidence 34456999999999987653 4444433222222 21111 222 2 247788887777665544332
Q ss_pred ccc-CccchhhcCCCCCCchhHHHHHHHhhhhHHHHHHHheeeeEEEE-eccc
Q 022069 90 NYC-GHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIV-VGGQ 140 (303)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~Wfv~G~~Wi~-~~~~ 140 (303)
... +++.. .+..-...+-+++.+.|++.-.+|.. .+|+
T Consensus 179 ~~~a~~~~~-------------~v~~~F~~l~~~~vvLWl~YPivW~ig~~G~ 218 (285)
T COG5524 179 FAKAKTRGT-------------EVRSLFLTLRNYTVVLWLGYPIVWLIGPGGN 218 (285)
T ss_pred hhhhcccch-------------HHHHHHHHHHHHHHHHHHhccceeEEccccC
Confidence 222 11100 12222334557899999998888999 3444
No 135
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.19 E-value=17 Score=33.89 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=33.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCK 293 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR 293 (303)
..|++=-+.-.++.....|.|||+.-++-+++--+.. -.||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 5687766665667778899999999999999854332 2599994
No 136
>PRK05978 hypothetical protein; Provisional
Probab=42.05 E-value=15 Score=30.60 Aligned_cols=25 Identities=20% Similarity=0.577 Sum_probs=20.3
Q ss_pred CC--CccChhhHHHHHhcCCCCcccccCccCC
Q 022069 270 CN--HHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 270 C~--H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
|| |.|+ .+++.+.+||.|-.+....
T Consensus 39 CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 39 CGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCcccc-----cccccCCCccccCCccccC
Confidence 64 8886 7899999999998877644
No 137
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.08 E-value=54 Score=33.18 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=20.7
Q ss_pred hHhHHHHHHHHHHHHHHHhhhhccCC
Q 022069 32 PIVFLDAIWNMAFVVVSVIVLFSTLK 57 (303)
Q Consensus 32 ~~v~~~~~~~l~~i~~~~~vl~~s~~ 57 (303)
-+-++=++.-|+.||++|.+=++.||
T Consensus 269 IiNSlvIVlfLSgiv~mI~lRtl~rD 294 (628)
T KOG1278|consen 269 IINSLVIVLFLSGIVAMIMLRTLYRD 294 (628)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677788999999999888766
No 138
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=36.55 E-value=1.5e+02 Score=27.08 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=46.6
Q ss_pred cchHhHHHHHHHHHHHHHHHhhhhcc-CCCCCCCchhhhHhHHHhHHHhhhheeeeeeeeecccC
Q 022069 30 FSPIVFLDAIWNMAFVVVSVIVLFST-LKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCG 93 (303)
Q Consensus 30 s~~~v~~~~~~~l~~i~~~~~vl~~s-~~e~p~~pl~~Wi~gy~~~~~~~~~l~~~~~~~~~~~~ 93 (303)
..|...+-.++.++..+.++.-+... ++-+---|+..|+.+..+-..+.+.+.+..|...|.++
T Consensus 44 ~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl~l~~~~~~~~~~~y~~~n~~G 108 (295)
T PF06814_consen 44 EYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVLILKMLELAFWFIYYHYINKTG 108 (295)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35666677777777777666666665 44445679999999999888888888888787777654
No 139
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.20 E-value=25 Score=25.06 Aligned_cols=12 Identities=50% Similarity=1.140 Sum_probs=8.7
Q ss_pred ccChhhHHHHHh
Q 022069 273 HFHCGCISKWLR 284 (303)
Q Consensus 273 ~FH~~CI~~WL~ 284 (303)
-||..|+.+|.+
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 140
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.00 E-value=41 Score=27.03 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=3.3
Q ss_pred hhhhhccCCCCHHHHhc
Q 022069 188 VYAVATRQGASADDIRN 204 (303)
Q Consensus 188 l~~~~~~~g~s~~~i~~ 204 (303)
.|.++|+++.+..+...
T Consensus 85 ~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 85 SYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHS---------
T ss_pred HHHHHHHhccCCCCCCC
Confidence 33344444444444433
No 141
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.78 E-value=13 Score=31.06 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=29.8
Q ss_pred eecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 254 ICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 254 ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
||+..-...+..-.-| =.+-|+.+|-.+- -..||-|.++|..+.
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~t---I~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKT---ITSCPNCSTPIRGDY 53 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHH---HHHCcCCCCCCCCce
Confidence 5665544444444444 3577999998874 357999999998654
No 142
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=32.26 E-value=3.8 Score=29.58 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=18.6
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
..|+.|-.+++... +|.++..|-.. ++..+.||-|..++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 45888876654432 44444445443 45567888887765
No 143
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=32.13 E-value=24 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=16.0
Q ss_pred cceeecccccCCC--------ceEEeCCCCccC
Q 022069 251 DCCICLSQYVDGA--------ELYTLPCNHHFH 275 (303)
Q Consensus 251 ~C~ICL~~y~~~~--------~lr~LpC~H~FH 275 (303)
+|+-|-..|+-++ .++.-.|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 5778888876443 334444888875
No 144
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=31.52 E-value=8.5 Score=35.62 Aligned_cols=37 Identities=30% Similarity=0.523 Sum_probs=31.0
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcCC
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA 287 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~ 287 (303)
+|.+|+++|+.+.......|.-.||..|+-.|++..+
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 8999999998766666776666999999999997653
No 145
>PHA02898 virion envelope protein; Provisional
Probab=30.22 E-value=48 Score=24.99 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=25.9
Q ss_pred ccCCCCC-CCchhhh-HhHHHhHHHhhhheeee-eeeeeccc
Q 022069 54 STLKEKP-ATPLRVW-VSGYALQCFLHVGFVFF-EYRRKNYC 92 (303)
Q Consensus 54 ~s~~e~p-~~pl~~W-i~gy~~~~~~~~~l~~~-~~~~~~~~ 92 (303)
.||+++| ++++|.- ++.+.+|.++.+.++.. -|+|+.+.
T Consensus 33 fSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 33 LSKSEKPADSALRSISIISFILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4899999 7777762 44555888888877544 44555554
No 146
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.19 E-value=38 Score=30.14 Aligned_cols=29 Identities=41% Similarity=0.848 Sum_probs=22.8
Q ss_pred cChhhHH----HHHhc---CCCCcccccCccCCCCC
Q 022069 274 FHCGCIS----KWLRI---NATCPLCKYNIRRGDTL 302 (303)
Q Consensus 274 FH~~CI~----~WL~~---~~tCPlCR~~I~~~~~i 302 (303)
=|.+||. +||+. +..|-+|+.++.++|.+
T Consensus 31 nHpkCiVQSYLqWL~DsDY~pNC~LC~t~La~gdt~ 66 (299)
T KOG3970|consen 31 NHPKCIVQSYLQWLQDSDYNPNCRLCNTPLASGDTT 66 (299)
T ss_pred cCchhhHHHHHHHHhhcCCCCCCceeCCccccCcce
Confidence 3678986 58754 57899999999988864
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.77 E-value=74 Score=33.29 Aligned_cols=50 Identities=32% Similarity=0.696 Sum_probs=31.7
Q ss_pred cCCCCCCcceeeccccc----CCCc-----eEEeC-CCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 244 ALHPEDSDCCICLSQYV----DGAE-----LYTLP-CNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 244 ~~~~ed~~C~ICL~~y~----~~~~-----lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
...+.+..|+-|-.+|- .|.. .-..| |.|.-|..=|.+ ...||+|...+.
T Consensus 1126 ~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1126 KIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred cCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 34456677877777664 2222 12334 999888765443 588999987654
No 148
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=29.74 E-value=57 Score=30.71 Aligned_cols=46 Identities=17% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCcccccC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYN 295 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~ 295 (303)
+..|--|..+.......+.=.|.|.|+.+| |..+. +=..||-|...
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldC-Dv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDC-DVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccc-hHHHHhhhhcCCCcCCC
Confidence 445888866655555555556999999999 44443 33679999643
No 149
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.63 E-value=11 Score=30.81 Aligned_cols=52 Identities=29% Similarity=0.578 Sum_probs=29.4
Q ss_pred cCCCCCCcceeeccc-ccCCCceEEeCCCCccChhhHHHHH-hcCC---CCcccccC
Q 022069 244 ALHPEDSDCCICLSQ-YVDGAELYTLPCNHHFHCGCISKWL-RINA---TCPLCKYN 295 (303)
Q Consensus 244 ~~~~ed~~C~ICL~~-y~~~~~lr~LpC~H~FH~~CI~~WL-~~~~---tCPlCR~~ 295 (303)
..-.+|+.|-||+.. |.||-....--|.-.|+..|-.+-- +.|. .|-+|+..
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 344578999999864 5665333333344445555544432 2232 48888753
No 150
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=29.34 E-value=31 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=21.6
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
|.-|-..+.+++. ....-+..||.+| -+|-.|++++..++
T Consensus 1 C~~C~~~I~~~~~-~~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEI-VIKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSE-EEEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEE-EEEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 3445555553322 2224566777766 45777777665543
No 151
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=29.06 E-value=28 Score=20.32 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=10.1
Q ss_pred cceeecccccCCCceEEeCCCCccChhhH
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCI 279 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI 279 (303)
.|.+|-.....+..-+-..|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 36677666555333455569999999985
No 152
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=28.25 E-value=16 Score=24.76 Aligned_cols=10 Identities=60% Similarity=1.301 Sum_probs=3.6
Q ss_pred CCcccccCcc
Q 022069 288 TCPLCKYNIR 297 (303)
Q Consensus 288 tCPlCR~~I~ 297 (303)
+||+|.+.+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4666655443
No 153
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.93 E-value=18 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=15.6
Q ss_pred EEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069 266 YTLPCNHHFHCGCISKWLRINATCPLCKY 294 (303)
Q Consensus 266 r~LpC~H~FH~~CI~~WL~~~~tCPlCR~ 294 (303)
+...|||.|-..--..= .....||-|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 34458887764221000 23457999987
No 154
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=27.89 E-value=28 Score=35.94 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=26.4
Q ss_pred EEeCCCCccCh--hhHHHHHhc--C---C--CCcccccCccCCCCC
Q 022069 266 YTLPCNHHFHC--GCISKWLRI--N---A--TCPLCKYNIRRGDTL 302 (303)
Q Consensus 266 r~LpC~H~FH~--~CI~~WL~~--~---~--tCPlCR~~I~~~~~i 302 (303)
..+||.++.|+ +|.|.-... + . .||+|.+...-++.+
T Consensus 316 m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 316 MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred eecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 57888888777 999875522 2 2 599998887766554
No 155
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=27.86 E-value=60 Score=23.56 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=16.5
Q ss_pred cccchHhHHHHHHHHHHHHHHHhhhhc
Q 022069 28 RFFSPIVFLDAIWNMAFVVVSVIVLFS 54 (303)
Q Consensus 28 ~~s~~~v~~~~~~~l~~i~~~~~vl~~ 54 (303)
-|++|++ .|-++++++.+.||.-
T Consensus 32 Vy~~P~m----A~~laeliav~lVl~G 54 (80)
T TIGR02741 32 VYRKPWM----AFFLAELIAVILVLWG 54 (80)
T ss_pred HHcChHH----HHHHHHHHHHHHHHhh
Confidence 3677764 5678898888877753
No 156
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=27.46 E-value=50 Score=27.16 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=11.6
Q ss_pred CCCcccccCccCCCC
Q 022069 287 ATCPLCKYNIRRGDT 301 (303)
Q Consensus 287 ~tCPlCR~~I~~~~~ 301 (303)
-.||.|...+...|+
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 579999998876553
No 157
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=27.46 E-value=79 Score=19.76 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=16.0
Q ss_pred cccchHhHHHHHHHHHHHHHHH
Q 022069 28 RFFSPIVFLDAIWNMAFVVVSV 49 (303)
Q Consensus 28 ~~s~~~v~~~~~~~l~~i~~~~ 49 (303)
+|-|-|++..++.-++|++...
T Consensus 11 aYEr~Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 11 AYERGWIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 5778888888777777775443
No 158
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=27.25 E-value=38 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=7.0
Q ss_pred hhHHHHHHHHH
Q 022069 151 WVTVVFLAFDV 161 (303)
Q Consensus 151 wl~ivfL~f~~ 161 (303)
|+++++.+++.
T Consensus 2 Wl~V~~iilg~ 12 (49)
T PF05624_consen 2 WLFVVLIILGA 12 (49)
T ss_pred eEEEeHHHHHH
Confidence 66666666665
No 159
>PRK11827 hypothetical protein; Provisional
Probab=27.25 E-value=21 Score=24.98 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=13.3
Q ss_pred HHHHhcCCCCcccccCccC
Q 022069 280 SKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 280 ~~WL~~~~tCPlCR~~I~~ 298 (303)
+++|..--.||.||.++..
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 4556666678999887754
No 160
>PLN02189 cellulose synthase
Probab=26.76 E-value=70 Score=34.81 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCCcceeeccccc---CCCceEEeC-CCCccChhhHHHHHh-cCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYV---DGAELYTLP-CNHHFHCGCISKWLR-INATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~---~~~~lr~Lp-C~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 297 (303)
....|.||-++.. +|+.-.... |+---|..|.+-=-+ -++.||-||+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3457999999974 555555556 888899999854322 3578999998765
No 161
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=26.55 E-value=59 Score=24.96 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCcceeecccccCCCceEEeC--CCCccChhhHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYTLP--CNHHFHCGCISKW 282 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CI~~W 282 (303)
....|.||-.. .|..++--. |...||..|..+.
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 35679999887 554444444 8889999998763
No 162
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=26.37 E-value=39 Score=22.70 Aligned_cols=22 Identities=27% Similarity=0.822 Sum_probs=13.4
Q ss_pred CCCccChhhHHHHHhcCCCCccc
Q 022069 270 CNHHFHCGCISKWLRINATCPLC 292 (303)
Q Consensus 270 C~H~FH~~CI~~WL~~~~tCPlC 292 (303)
|||.|...=-++ ......||.|
T Consensus 34 Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhh-ccCCCCCCCC
Confidence 677665543222 3566789988
No 163
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=25.98 E-value=24 Score=20.58 Aligned_cols=11 Identities=45% Similarity=1.156 Sum_probs=6.2
Q ss_pred CCcccccCccC
Q 022069 288 TCPLCKYNIRR 298 (303)
Q Consensus 288 tCPlCR~~I~~ 298 (303)
+||.|.+.+.+
T Consensus 1 ~CP~C~s~l~~ 11 (28)
T PF03119_consen 1 TCPVCGSKLVR 11 (28)
T ss_dssp B-TTT--BEEE
T ss_pred CcCCCCCEeEc
Confidence 59999988873
No 164
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=54 Score=29.66 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=27.4
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHH
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL 283 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL 283 (303)
..|+.||..+.++ ...|=||+|..+||-+.+
T Consensus 44 dcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 4578999999887 788999999999999876
No 165
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.70 E-value=23 Score=24.84 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=18.2
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL 283 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL 283 (303)
+...|.+|-.+|.--..-.--. ||++|+.+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3467999999996543333334 99999999987655
No 166
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.20 E-value=22 Score=40.04 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=40.4
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI 296 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I 296 (303)
+.....|-+|.....+.+.+...-|.-.||..|++.=+..-+ .||-||..-
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 344578999999988876666666889999999999886643 699998754
No 167
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=72 Score=29.47 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=33.8
Q ss_pred CCcceeecccccCCCceEEeC--CCCccChhhHHHHHhcC-----------CCCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTLP--CNHHFHCGCISKWLRIN-----------ATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CI~~WL~~~-----------~tCPlCR~~I 296 (303)
...|.+|-+.++|-. ..+.| =.|-||..|-++-+|.+ ..|||--.++
T Consensus 268 pLcCTLC~ERLEDTH-FVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~v 327 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTH-FVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNV 327 (352)
T ss_pred ceeehhhhhhhccCc-eeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcc
Confidence 355779999988862 23444 36999999999998764 2588776655
No 168
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=24.39 E-value=1.4e+02 Score=20.67 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=28.7
Q ss_pred cceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 251 DCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 251 ~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
.|--|=.++..+. +-+.-.=..-|+.+|.+.-| +..||.|--.+.+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3555656655443 22222212459999999966 7899999766543
No 169
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.40 E-value=60 Score=21.56 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=24.7
Q ss_pred CcceeecccccCCCceEE-eCCCCccChhhHHHHHh
Q 022069 250 SDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWLR 284 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~WL~ 284 (303)
..|.+|-..|.-...-.. -.||++|+.+|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 458889888776432223 34999999999887654
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.83 E-value=51 Score=29.48 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=9.4
Q ss_pred hcCCCCcccccCc
Q 022069 284 RINATCPLCKYNI 296 (303)
Q Consensus 284 ~~~~tCPlCR~~I 296 (303)
++...||+||+.=
T Consensus 206 RNAPiCPlCK~Ks 218 (230)
T PF10146_consen 206 RNAPICPLCKAKS 218 (230)
T ss_pred cCCCCCccccccc
Confidence 3457999998753
No 171
>PF13239 2TM: 2TM domain
Probab=22.22 E-value=88 Score=22.89 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=23.0
Q ss_pred HHHHHHhhhhccCCCCCCCchhhh-HhHHHhHHHhhhheeee
Q 022069 44 FVVVSVIVLFSTLKEKPATPLRVW-VSGYALQCFLHVGFVFF 84 (303)
Q Consensus 44 ~i~~~~~vl~~s~~e~p~~pl~~W-i~gy~~~~~~~~~l~~~ 84 (303)
.+++.++..++..-..|..|-.+| +.|++++.++|..-++.
T Consensus 22 y~ivn~~l~~in~~~~~~~~W~~~~~~~Wgi~L~~h~~~vf~ 63 (83)
T PF13239_consen 22 YLIVNSFLIFINLFTGPGYFWPLWPILGWGIGLAIHALKVFG 63 (83)
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 333444333333333555554445 45777888888887763
No 172
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=1e+02 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.800 Sum_probs=13.1
Q ss_pred HHHHHHHheee---eEEEE
Q 022069 121 TMISSIWWVIG---FYWIV 136 (303)
Q Consensus 121 ~~f~~~Wfv~G---~~Wi~ 136 (303)
-+|.++|.+.| -+|+|
T Consensus 241 ILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 241 ILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHHhCCCCceEec
Confidence 36888999988 67888
No 173
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=21.64 E-value=45 Score=33.74 Aligned_cols=35 Identities=23% Similarity=0.530 Sum_probs=24.0
Q ss_pred CCCCcceeecccccC----CC-------ceEEeCCCCccChhhHHHH
Q 022069 247 PEDSDCCICLSQYVD----GA-------ELYTLPCNHHFHCGCISKW 282 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~----~~-------~lr~LpC~H~FH~~CI~~W 282 (303)
.....|.||-++|++ .+ -+++. =|-+||..|+..=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 345679999999873 11 12222 5789999998764
No 174
>PLN02195 cellulose synthase A
Probab=21.54 E-value=1.4e+02 Score=32.39 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=36.0
Q ss_pred Ccceeeccccc---CCCceEEeC-CCCccChhhHHHHH-hcCCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYV---DGAELYTLP-CNHHFHCGCISKWL-RINATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~---~~~~lr~Lp-C~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~~~ 301 (303)
..|.||=++.. +|+.-.... |+---|+.|.+-=- .-++.||-||+...+++.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~ 63 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENV 63 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccc
Confidence 46999988764 445444444 88889999984322 225789999998775443
No 175
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.53 E-value=52 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.642 Sum_probs=13.1
Q ss_pred cCCCCcccccCccCCCC
Q 022069 285 INATCPLCKYNIRRGDT 301 (303)
Q Consensus 285 ~~~tCPlCR~~I~~~~~ 301 (303)
.|..||.|-.+|++++.
T Consensus 2 ~HkHC~~CG~~Ip~~~~ 18 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDES 18 (59)
T ss_pred CCCcCCcCCCcCCcchh
Confidence 36679999999887653
No 176
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.52 E-value=53 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=12.8
Q ss_pred CCCCcccccCccCCCC
Q 022069 286 NATCPLCKYNIRRGDT 301 (303)
Q Consensus 286 ~~tCPlCR~~I~~~~~ 301 (303)
+.-||+|-++|++++.
T Consensus 8 H~HC~VCg~aIp~de~ 23 (64)
T COG4068 8 HRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CccccccCCcCCCccc
Confidence 4569999999988764
No 177
>PLN02436 cellulose synthase A
Probab=21.17 E-value=1e+02 Score=33.69 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=36.3
Q ss_pred CCCcceeecccc---cCCCceEEeC-CCCccChhhHHHHHh-cCCCCcccccCcc
Q 022069 248 EDSDCCICLSQY---VDGAELYTLP-CNHHFHCGCISKWLR-INATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y---~~~~~lr~Lp-C~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 297 (303)
....|-||-++. .+|+.-.... |+---|..|.+-=-+ -++.||-||+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345799999996 4666655555 888899999854332 3578999998765
No 178
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=21.16 E-value=1.6e+02 Score=26.10 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred ccccceeceecCCCCcchhcccCCCCcccchHhHHHHHHHHHHHHHHHh--------hhhccCCCC----CCCc--hhhh
Q 022069 2 EEEQEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVI--------VLFSTLKEK----PATP--LRVW 67 (303)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~~~~~l~~i~~~~~--------vl~~s~~e~----p~~p--l~~W 67 (303)
|++-.|+||+.+.|++.... +++=.++.+.+-.. |-.+|+.+. |-.| ++-=
T Consensus 112 e~~tqiInItv~~~~p~~Aa---------------~IAN~~~~vf~~~i~~im~vd~v~Ils~A~~~~~spvsP~~~~Ni 176 (226)
T COG3944 112 ETDTQIINITVNDGSPEEAA---------------EIANSISEVFAKVIPEIMNVDNVSILSEAEASPSSPVSPKVMRNI 176 (226)
T ss_pred CCCceEEEEEcCCCChHHHH---------------HHHHHHHHHHHHhhHhhcCcCceeeecccccCCCCCCChHHHHHH
Confidence 57788999999998887443 34444444433322 233444444 3334 7777
Q ss_pred HhHHHhHHHhhhheeeeeeeeecccC
Q 022069 68 VSGYALQCFLHVGFVFFEYRRKNYCG 93 (303)
Q Consensus 68 i~gy~~~~~~~~~l~~~~~~~~~~~~ 93 (303)
++++.+|.+...++.+.+-....|..
T Consensus 177 ~iaf~~Gl~~~igiafl~e~lD~tIK 202 (226)
T COG3944 177 VIAFLAGLAGAIGIAFLLEYLDKTIK 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 88888888888777665444434443
No 179
>PRK00523 hypothetical protein; Provisional
Probab=20.75 E-value=2.6e+02 Score=20.27 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=11.1
Q ss_pred hhhccCCCCHHHHhcC
Q 022069 190 AVATRQGASADDIRNL 205 (303)
Q Consensus 190 ~~~~~~g~s~~~i~~L 205 (303)
.+..+...+++.++.+
T Consensus 33 ~l~~NPpine~mir~M 48 (72)
T PRK00523 33 QIRENPPITENMIRAM 48 (72)
T ss_pred HHHHCcCCCHHHHHHH
Confidence 3456778888888764
No 180
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.68 E-value=15 Score=33.81 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=37.5
Q ss_pred CCCcceeecccccCCC---ceEEeC--------CCCccChhhHHHHHhcC-CCCcccccC
Q 022069 248 EDSDCCICLSQYVDGA---ELYTLP--------CNHHFHCGCISKWLRIN-ATCPLCKYN 295 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~---~lr~Lp--------C~H~FH~~CI~~WL~~~-~tCPlCR~~ 295 (303)
.+..|.||...|+.++ ..+.+. |+|--+..|++.=+... ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3467999999998432 235666 99999999999987554 589999864
No 181
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=20.39 E-value=48 Score=18.91 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=8.0
Q ss_pred CCCcccccCcc
Q 022069 287 ATCPLCKYNIR 297 (303)
Q Consensus 287 ~tCPlCR~~I~ 297 (303)
..||+|.+.+.
T Consensus 2 v~CPiC~~~v~ 12 (26)
T smart00734 2 VQCPVCFREVP 12 (26)
T ss_pred CcCCCCcCccc
Confidence 36999977763
No 182
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.20 E-value=1.8e+02 Score=19.01 Aligned_cols=11 Identities=27% Similarity=1.271 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 022069 166 FCIGMVCIFFF 176 (303)
Q Consensus 166 ~~i~l~~ii~i 176 (303)
||++++|++.+
T Consensus 35 fclilicllli 45 (52)
T PF04272_consen 35 FCLILICLLLI 45 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44454444433
No 183
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the