Query 022069
Match_columns 303
No_of_seqs 273 out of 1800
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2.8E-18 9.7E-23 130.4 5.9 78 192-298 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 5.3E-18 1.8E-22 124.0 3.4 53 248-300 22-74 (75)
3 2ep4_A Ring finger protein 24; 99.6 4.9E-16 1.7E-20 113.1 5.7 56 246-301 12-67 (74)
4 1iym_A EL5; ring-H2 finger, ub 99.6 2.7E-16 9.3E-21 107.7 3.9 50 248-297 4-54 (55)
5 2ect_A Ring finger protein 126 99.6 4.7E-16 1.6E-20 114.3 5.1 56 246-301 12-67 (78)
6 2kiz_A E3 ubiquitin-protein li 99.6 5.8E-16 2E-20 111.1 5.2 54 246-299 11-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.3E-15 4.5E-20 113.1 2.7 52 248-299 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 6E-15 2.1E-19 100.8 4.2 50 248-297 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.5 6.8E-15 2.3E-19 105.9 2.9 56 246-301 7-66 (71)
10 2ea6_A Ring finger protein 4; 99.5 1.3E-14 4.5E-19 103.6 4.2 53 246-298 12-68 (69)
11 1v87_A Deltex protein 2; ring- 99.5 2.5E-14 8.4E-19 112.7 5.0 52 248-299 24-95 (114)
12 3dpl_R Ring-box protein 1; ubi 99.5 2.4E-14 8.3E-19 111.6 4.7 50 248-297 36-100 (106)
13 2d8s_A Cellular modulator of i 99.5 3.2E-14 1.1E-18 105.3 5.0 54 246-300 12-72 (80)
14 2xeu_A Ring finger protein 4; 99.5 1.3E-14 4.3E-19 102.2 2.6 54 248-301 2-59 (64)
15 2ecn_A Ring finger protein 141 99.5 2.7E-14 9.4E-19 102.6 3.4 51 247-301 13-63 (70)
16 2d8t_A Dactylidin, ring finger 99.4 2.7E-14 9.1E-19 103.1 1.8 50 247-299 13-62 (71)
17 2djb_A Polycomb group ring fin 99.4 1.1E-13 3.9E-18 100.0 5.2 53 247-302 13-66 (72)
18 1chc_A Equine herpes virus-1 r 99.4 1.2E-13 4.2E-18 98.5 4.3 50 247-298 3-52 (68)
19 2yur_A Retinoblastoma-binding 99.4 2.1E-13 7.3E-18 99.2 5.2 54 246-302 12-68 (74)
20 2ct2_A Tripartite motif protei 99.4 3.4E-13 1.2E-17 100.9 5.4 55 246-300 12-70 (88)
21 2ecy_A TNF receptor-associated 99.4 3.3E-13 1.1E-17 95.8 4.5 52 247-301 13-65 (66)
22 4a0k_B E3 ubiquitin-protein li 99.4 6.7E-14 2.3E-18 110.8 0.6 50 248-297 47-111 (117)
23 2ysl_A Tripartite motif-contai 99.4 5.5E-13 1.9E-17 96.3 5.4 53 246-301 17-72 (73)
24 2csy_A Zinc finger protein 183 99.3 5.9E-13 2E-17 98.4 4.6 49 246-297 12-60 (81)
25 2ecw_A Tripartite motif-contai 99.3 4.3E-12 1.5E-16 93.9 6.0 52 246-300 16-73 (85)
26 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.7E-17 104.7 3.0 54 247-300 5-62 (133)
27 4ayc_A E3 ubiquitin-protein li 99.3 9.1E-13 3.1E-17 107.4 1.9 48 248-298 52-99 (138)
28 2ct0_A Non-SMC element 1 homol 99.2 4.5E-12 1.5E-16 92.0 4.7 50 248-299 14-65 (74)
29 2ecv_A Tripartite motif-contai 99.2 5E-12 1.7E-16 93.6 5.1 53 246-301 16-74 (85)
30 1t1h_A Gspef-atpub14, armadill 99.2 3.3E-12 1.1E-16 93.5 3.8 51 247-300 6-57 (78)
31 2ysj_A Tripartite motif-contai 99.2 8.1E-12 2.8E-16 87.7 5.7 44 246-292 17-63 (63)
32 2egp_A Tripartite motif-contai 99.2 1.3E-12 4.3E-17 95.8 1.4 51 247-300 10-67 (79)
33 3lrq_A E3 ubiquitin-protein li 99.2 1.2E-12 4.2E-17 100.8 1.0 50 248-300 21-72 (100)
34 1g25_A CDK-activating kinase a 99.2 5.4E-12 1.8E-16 89.2 3.9 54 248-301 2-58 (65)
35 2ecj_A Tripartite motif-contai 99.2 6.4E-12 2.2E-16 86.4 4.0 44 246-292 12-58 (58)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 4.7E-12 1.6E-16 101.5 2.9 56 246-301 69-128 (133)
37 2y43_A E3 ubiquitin-protein li 99.2 3.9E-12 1.3E-16 97.6 1.8 50 248-300 21-71 (99)
38 3ztg_A E3 ubiquitin-protein li 99.2 1.9E-11 6.6E-16 92.3 5.3 50 246-298 10-62 (92)
39 2ckl_A Polycomb group ring fin 99.1 1.5E-11 5E-16 95.8 3.1 50 248-299 14-63 (108)
40 3fl2_A E3 ubiquitin-protein li 99.1 1.3E-11 4.5E-16 98.5 2.6 48 248-298 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.1 3.7E-11 1.3E-15 93.8 3.6 51 248-301 20-73 (112)
42 3hct_A TNF receptor-associated 99.1 3.7E-11 1.3E-15 95.1 2.2 51 247-300 16-67 (118)
43 2ckl_B Ubiquitin ligase protei 99.1 4.9E-11 1.7E-15 99.9 2.8 50 248-299 53-103 (165)
44 1rmd_A RAG1; V(D)J recombinati 99.0 3.8E-11 1.3E-15 94.6 1.4 50 248-300 22-72 (116)
45 3l11_A E3 ubiquitin-protein li 99.0 2.3E-11 7.8E-16 95.8 -0.2 48 247-297 13-61 (115)
46 1z6u_A NP95-like ring finger p 99.0 7.4E-11 2.5E-15 97.5 2.7 49 248-299 77-126 (150)
47 1e4u_A Transcriptional repress 99.0 2.2E-10 7.4E-15 84.2 4.2 54 247-301 9-65 (78)
48 2vje_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 82.3 1.5 47 248-297 7-56 (64)
49 1bor_A Transcription factor PM 99.0 1.4E-10 4.6E-15 79.6 1.7 47 248-300 5-51 (56)
50 2y1n_A E3 ubiquitin-protein li 99.0 2.1E-10 7.2E-15 107.8 3.1 50 249-301 332-382 (389)
51 1wgm_A Ubiquitin conjugation f 99.0 6.8E-10 2.3E-14 85.1 5.4 53 246-301 19-72 (98)
52 2kr4_A Ubiquitin conjugation f 99.0 3.7E-10 1.3E-14 84.3 3.8 52 246-300 11-62 (85)
53 2kre_A Ubiquitin conjugation f 98.9 5.3E-10 1.8E-14 86.0 4.5 54 245-301 25-78 (100)
54 3knv_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 92.7 1.5 50 246-298 28-78 (141)
55 2vje_B MDM4 protein; proto-onc 98.9 3.4E-10 1.2E-14 79.6 1.2 47 248-297 6-55 (63)
56 1jm7_B BARD1, BRCA1-associated 98.9 3.6E-10 1.2E-14 89.3 1.4 49 247-300 20-69 (117)
57 4ic3_A E3 ubiquitin-protein li 98.9 1.3E-10 4.4E-15 84.4 -1.8 44 248-298 23-67 (74)
58 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.4E-09 4.8E-14 75.7 3.4 47 248-297 5-58 (60)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 5.2E-10 1.8E-14 102.6 1.2 51 247-297 306-372 (381)
60 2ea5_A Cell growth regulator w 98.8 5.6E-09 1.9E-13 74.5 4.7 47 245-298 11-58 (68)
61 3hcs_A TNF receptor-associated 98.7 2.4E-09 8.3E-14 89.8 2.0 51 247-300 16-67 (170)
62 2ecg_A Baculoviral IAP repeat- 98.7 1.9E-09 6.6E-14 78.3 -0.2 46 248-300 24-70 (75)
63 2c2l_A CHIP, carboxy terminus 98.7 8.2E-09 2.8E-13 92.6 3.5 53 245-300 204-257 (281)
64 2yu4_A E3 SUMO-protein ligase 98.7 5.2E-09 1.8E-13 79.4 1.6 50 247-299 5-64 (94)
65 1wim_A KIAA0161 protein; ring 98.6 1E-08 3.4E-13 77.7 0.8 51 248-298 4-66 (94)
66 2yho_A E3 ubiquitin-protein li 98.5 1.6E-08 5.6E-13 74.2 0.2 44 248-298 17-61 (79)
67 2f42_A STIP1 homology and U-bo 98.5 4.1E-08 1.4E-12 83.0 2.6 52 246-300 103-155 (179)
68 2bay_A PRE-mRNA splicing facto 98.4 6.2E-08 2.1E-12 67.5 0.9 49 250-301 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.3 8.7E-08 3E-12 89.2 1.0 45 247-298 293-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 3.6E-07 1.2E-11 81.2 2.6 53 246-300 178-234 (267)
71 3vk6_A E3 ubiquitin-protein li 97.9 6.4E-06 2.2E-10 62.2 2.6 45 252-298 4-49 (101)
72 3nw0_A Non-structural maintena 97.8 1.8E-05 6.1E-10 69.9 4.6 49 248-299 179-230 (238)
73 2ko5_A Ring finger protein Z; 95.0 0.027 9.2E-07 41.8 4.4 46 249-299 28-74 (99)
74 2lri_C Autoimmune regulator; Z 94.9 0.017 5.7E-07 40.4 3.0 47 247-296 10-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.019 6.7E-07 43.0 2.2 36 248-283 2-38 (101)
76 1wil_A KIAA1045 protein; ring 92.0 0.11 3.9E-06 37.6 3.2 38 244-282 10-47 (89)
77 1we9_A PHD finger family prote 91.6 0.052 1.8E-06 37.3 1.0 49 247-295 4-58 (64)
78 2l43_A N-teminal domain from h 89.8 0.1 3.5E-06 38.4 1.3 54 245-298 21-78 (88)
79 1f62_A Transcription factor WS 89.6 0.12 4.1E-06 33.7 1.3 44 251-294 2-49 (51)
80 2k16_A Transcription initiatio 89.1 0.07 2.4E-06 37.9 -0.1 51 248-299 17-72 (75)
81 2l5u_A Chromodomain-helicase-D 88.2 0.17 6E-06 34.4 1.4 46 247-295 9-58 (61)
82 1mm2_A MI2-beta; PHD, zinc fin 87.6 0.12 4E-06 35.3 0.2 49 248-299 8-60 (61)
83 2puy_A PHD finger protein 21A; 87.4 0.048 1.6E-06 37.0 -1.9 51 248-301 4-58 (60)
84 2yql_A PHD finger protein 21A; 86.7 0.083 2.8E-06 35.3 -0.9 45 247-294 7-55 (56)
85 2e6r_A Jumonji/ARID domain-con 86.5 0.089 3E-06 39.1 -1.0 50 245-294 12-65 (92)
86 1wep_A PHF8; structural genomi 86.5 0.57 2E-05 33.4 3.4 47 250-296 12-64 (79)
87 2ysm_A Myeloid/lymphoid or mix 85.9 0.21 7.2E-06 38.1 0.9 38 247-284 5-42 (111)
88 1wem_A Death associated transc 85.1 0.3 1E-05 34.6 1.3 48 251-298 17-73 (76)
89 1xwh_A Autoimmune regulator; P 83.7 0.22 7.5E-06 34.4 0.0 47 247-296 6-56 (66)
90 2kgg_A Histone demethylase jar 83.5 0.33 1.1E-05 31.8 0.9 43 251-293 4-52 (52)
91 1fp0_A KAP-1 corepressor; PHD 83.3 0.63 2.2E-05 34.2 2.4 48 246-296 22-73 (88)
92 2vpb_A Hpygo1, pygopus homolog 83.0 0.62 2.1E-05 32.1 2.2 36 246-281 5-42 (65)
93 1wee_A PHD finger family prote 82.0 0.21 7.2E-06 35.1 -0.6 49 249-298 16-69 (72)
94 1weu_A Inhibitor of growth fam 81.5 1 3.5E-05 33.3 2.9 47 249-298 35-88 (91)
95 2lv9_A Histone-lysine N-methyl 80.7 0.41 1.4E-05 35.8 0.6 43 251-294 30-75 (98)
96 1wen_A Inhibitor of growth fam 80.2 0.95 3.3E-05 31.7 2.3 46 249-298 16-68 (71)
97 3m62_A Ubiquitin conjugation f 77.0 1 3.5E-05 46.7 2.4 54 245-301 887-941 (968)
98 3o70_A PHD finger protein 13; 76.7 0.42 1.4E-05 33.3 -0.4 46 248-294 18-66 (68)
99 3v43_A Histone acetyltransfera 75.9 0.73 2.5E-05 35.2 0.7 44 251-294 63-111 (112)
100 2yt5_A Metal-response element- 75.9 1.2 4.2E-05 30.3 1.8 50 247-296 4-62 (66)
101 2ri7_A Nucleosome-remodeling f 75.3 0.56 1.9E-05 38.5 -0.1 46 248-294 7-58 (174)
102 2e6s_A E3 ubiquitin-protein li 75.1 0.47 1.6E-05 33.9 -0.5 44 250-294 27-76 (77)
103 3v43_A Histone acetyltransfera 73.6 3.2 0.00011 31.5 3.9 34 248-281 4-43 (112)
104 2ku3_A Bromodomain-containing 73.2 2.3 7.9E-05 29.7 2.7 49 246-294 13-65 (71)
105 1wew_A DNA-binding family prot 71.0 1.6 5.5E-05 31.0 1.5 50 249-299 16-76 (78)
106 2xb1_A Pygopus homolog 2, B-ce 70.6 1.9 6.4E-05 32.6 1.9 48 249-296 3-62 (105)
107 4gne_A Histone-lysine N-methyl 69.5 3.2 0.00011 31.4 3.0 44 247-296 13-63 (107)
108 3asl_A E3 ubiquitin-protein li 68.2 0.57 2E-05 32.7 -1.4 43 251-294 20-68 (70)
109 3shb_A E3 ubiquitin-protein li 65.7 0.7 2.4E-05 33.0 -1.4 44 251-295 28-77 (77)
110 2vnf_A ING 4, P29ING4, inhibit 65.2 0.86 2.9E-05 30.8 -1.0 43 249-294 9-58 (60)
111 3c6w_A P28ING5, inhibitor of g 65.1 0.9 3.1E-05 30.6 -0.8 42 250-294 9-57 (59)
112 2rsd_A E3 SUMO-protein ligase 63.4 0.53 1.8E-05 32.6 -2.3 44 250-294 10-64 (68)
113 3ask_A E3 ubiquitin-protein li 59.9 2.3 7.9E-05 36.7 0.6 46 250-295 175-225 (226)
114 3i2d_A E3 SUMO-protein ligase 59.5 3.4 0.00012 38.2 1.6 49 250-301 250-303 (371)
115 1wev_A Riken cDNA 1110020M19; 58.9 1.8 6.1E-05 31.6 -0.3 50 248-297 15-74 (88)
116 4fo9_A E3 SUMO-protein ligase 57.8 3.8 0.00013 37.8 1.7 50 250-301 216-269 (360)
117 2lbm_A Transcriptional regulat 57.8 8.4 0.00029 30.6 3.5 46 247-295 61-117 (142)
118 2g6q_A Inhibitor of growth pro 53.1 2 6.8E-05 29.2 -0.8 42 250-294 11-59 (62)
119 2kwj_A Zinc finger protein DPF 52.2 7.6 0.00026 29.5 2.3 33 250-282 2-41 (114)
120 2kwj_A Zinc finger protein DPF 51.2 0.85 2.9E-05 35.0 -3.3 48 251-298 60-111 (114)
121 3o7a_A PHD finger protein 13 v 49.8 2.3 7.8E-05 27.6 -0.9 45 250-294 4-51 (52)
122 2ysm_A Myeloid/lymphoid or mix 48.3 2.9 9.8E-05 31.6 -0.7 46 251-296 56-105 (111)
123 2gmg_A Hypothetical protein PF 47.1 3.2 0.00011 31.3 -0.5 26 266-296 69-94 (105)
124 3ql9_A Transcriptional regulat 45.1 13 0.00046 29.0 2.7 45 247-295 55-111 (129)
125 2co8_A NEDD9 interacting prote 45.0 23 0.00079 24.7 3.9 41 248-298 14-54 (82)
126 2d8v_A Zinc finger FYVE domain 44.7 12 0.0004 25.7 2.0 32 247-282 6-38 (67)
127 1weo_A Cellulose synthase, cat 44.6 34 0.0012 24.9 4.6 50 248-297 15-69 (93)
128 1wd2_A Ariadne-1 protein homol 44.4 7.6 0.00026 26.0 1.1 19 282-300 1-20 (60)
129 3mjh_B Early endosome antigen 43.2 2.2 7.4E-05 25.5 -1.6 8 289-296 8-15 (34)
130 2cu8_A Cysteine-rich protein 2 42.8 18 0.00061 24.7 2.9 40 249-298 9-48 (76)
131 1iml_A CRIP, cysteine rich int 42.5 9.3 0.00032 26.2 1.4 43 248-294 26-69 (76)
132 3kqi_A GRC5, PHD finger protei 41.9 14 0.00049 25.6 2.3 48 248-295 8-61 (75)
133 1z2q_A LM5-1; membrane protein 41.4 30 0.001 24.5 4.0 53 248-300 20-81 (84)
134 1x62_A C-terminal LIM domain p 41.2 25 0.00085 24.2 3.5 39 248-297 14-52 (79)
135 2dj7_A Actin-binding LIM prote 40.5 24 0.00081 24.5 3.3 40 248-297 14-53 (80)
136 1z60_A TFIIH basal transcripti 40.2 9.6 0.00033 25.6 1.0 41 250-292 16-58 (59)
137 2jvx_A NF-kappa-B essential mo 39.1 6.5 0.00022 22.3 0.1 13 286-298 3-15 (28)
138 1x64_A Alpha-actinin-2 associa 36.5 38 0.0013 23.8 3.9 41 248-299 24-64 (89)
139 2dar_A PDZ and LIM domain prot 34.7 58 0.002 22.8 4.7 39 249-298 25-63 (90)
140 1vfy_A Phosphatidylinositol-3- 34.4 23 0.0008 24.4 2.4 34 249-282 11-45 (73)
141 2d8y_A Eplin protein; LIM doma 33.5 41 0.0014 23.7 3.7 40 249-298 15-54 (91)
142 1zbd_B Rabphilin-3A; G protein 32.5 17 0.00059 28.4 1.6 33 248-280 54-88 (134)
143 1dvp_A HRS, hepatocyte growth 32.1 19 0.00066 30.4 1.9 35 249-283 161-196 (220)
144 2pk7_A Uncharacterized protein 31.3 12 0.00041 25.9 0.4 18 280-297 2-19 (69)
145 2jny_A Uncharacterized BCR; st 30.5 10 0.00034 26.2 -0.1 18 280-297 4-21 (67)
146 2yw8_A RUN and FYVE domain-con 30.5 31 0.0011 24.3 2.5 35 248-282 18-53 (82)
147 1wfk_A Zinc finger, FYVE domai 30.2 31 0.001 24.8 2.5 35 248-282 8-43 (88)
148 1x4u_A Zinc finger, FYVE domai 29.8 50 0.0017 23.3 3.6 35 248-282 13-48 (84)
149 1g47_A Pinch protein; LIM doma 29.6 46 0.0016 22.4 3.3 42 249-299 11-52 (77)
150 1x61_A Thyroid receptor intera 29.5 57 0.002 21.6 3.7 27 251-278 7-33 (72)
151 2cs3_A Protein C14ORF4, MY039 28.6 1.2E+02 0.004 21.6 5.1 37 248-285 14-52 (93)
152 3zyq_A Hepatocyte growth facto 28.4 25 0.00085 29.9 2.0 35 249-283 164-199 (226)
153 1wyh_A SLIM 2, skeletal muscle 28.3 37 0.0013 22.6 2.5 40 250-298 6-45 (72)
154 3kv5_D JMJC domain-containing 27.3 28 0.00095 33.4 2.3 48 248-295 35-88 (488)
155 1joc_A EEA1, early endosomal a 27.3 27 0.00094 26.8 1.9 33 250-282 70-103 (125)
156 3t7l_A Zinc finger FYVE domain 26.8 32 0.0011 24.8 2.1 35 249-283 20-55 (90)
157 1x63_A Skeletal muscle LIM-pro 26.7 54 0.0018 22.4 3.3 41 250-299 16-56 (82)
158 3mpx_A FYVE, rhogef and PH dom 26.5 14 0.00047 34.3 0.0 50 249-298 375-432 (434)
159 2o35_A Hypothetical protein DU 26.4 25 0.00085 26.1 1.4 12 273-284 42-53 (105)
160 2lcq_A Putative toxin VAPC6; P 26.2 22 0.00076 28.4 1.2 27 266-298 134-160 (165)
161 3fyb_A Protein of unknown func 26.0 26 0.00088 26.0 1.4 12 273-284 41-52 (104)
162 1x4l_A Skeletal muscle LIM-pro 25.4 52 0.0018 21.8 2.9 39 250-297 6-46 (72)
163 3f6q_B LIM and senescent cell 24.2 34 0.0012 22.5 1.7 42 249-299 11-52 (72)
164 1x4k_A Skeletal muscle LIM-pro 23.8 55 0.0019 21.7 2.8 40 250-298 6-45 (72)
165 1m3v_A FLIN4, fusion of the LI 22.9 48 0.0016 24.9 2.5 52 250-301 33-84 (122)
166 2d8z_A Four and A half LIM dom 22.3 83 0.0029 20.6 3.5 37 250-297 6-42 (70)
167 1y02_A CARP2, FYVE-ring finger 22.2 11 0.00038 29.1 -1.3 44 250-293 20-64 (120)
168 1a7i_A QCRP2 (LIM1); LIM domai 22.0 28 0.00097 23.9 0.9 39 250-298 8-46 (81)
169 2kpi_A Uncharacterized protein 21.8 7.7 0.00026 25.7 -2.0 17 281-297 5-21 (56)
170 2zet_C Melanophilin; complex, 21.2 33 0.0011 27.5 1.3 46 248-294 67-116 (153)
171 2d8x_A Protein pinch; LIM doma 21.0 61 0.0021 21.3 2.5 38 250-298 6-43 (70)
172 2kdx_A HYPA, hydrogenase/ureas 20.6 42 0.0014 25.3 1.8 26 264-295 73-99 (119)
173 2jr6_A UPF0434 protein NMA0874 20.6 12 0.00042 25.8 -1.2 17 281-297 3-19 (68)
174 2l3k_A Rhombotin-2, linker, LI 20.5 51 0.0018 24.7 2.3 34 249-283 36-69 (123)
175 1nyp_A Pinch protein; LIM doma 20.3 55 0.0019 21.3 2.1 38 250-298 6-43 (66)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=130.38 Aligned_cols=78 Identities=33% Similarity=0.660 Sum_probs=66.1
Q ss_pred hccCCCCHHHHhcCCcceeccccccccCCCCccccccCCcccccCCCCcccccCCCCCCcceeecccccCCCceEEeCCC
Q 022069 192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCN 271 (303)
Q Consensus 192 ~~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~ 271 (303)
...+|++++.+++||...+.... ....++.+|+||+++|.+++.++.+||+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~-----------------------------~~~~~~~~C~IC~~~~~~~~~~~~l~C~ 62 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDH-----------------------------GAVGQEMCCPICCSEYVKGDVATELPCH 62 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTC-----------------------------SSSSSCSEETTTTEECCTTCEEEEETTT
T ss_pred cCCCCCCHHHHHhCCCeeecccc-----------------------------cccCCCCCCcccChhhcCCCcEEecCCC
Confidence 45689999999999988876110 0123567899999999999999999999
Q ss_pred CccChhhHHHHHhcCCCCcccccCccC
Q 022069 272 HHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 272 H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
|.||..||++|++.+.+||+||+++..
T Consensus 63 H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 63 HYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-18 Score=124.00 Aligned_cols=53 Identities=38% Similarity=0.986 Sum_probs=49.4
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++.+.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 56789999999999999999999999999999999999999999999988754
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=113.06 Aligned_cols=56 Identities=32% Similarity=0.772 Sum_probs=50.2
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..++.+|+||++.|.+++.++.+||+|.||..||++|++.+.+||+||+++..-..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34567899999999999999999999999999999999999999999999876443
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=2.7e-16 Score=107.72 Aligned_cols=50 Identities=40% Similarity=1.061 Sum_probs=46.6
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
++.+|+||+++|.+++..+.+| |+|.||.+||++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5678999999999999999998 9999999999999999999999999864
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=4.7e-16 Score=114.33 Aligned_cols=56 Identities=34% Similarity=0.853 Sum_probs=50.9
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+++...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34567899999999999999999999999999999999999999999999987654
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=5.8e-16 Score=111.12 Aligned_cols=54 Identities=37% Similarity=0.933 Sum_probs=48.9
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+++...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999988999999999999999999999999999999988653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-15 Score=113.07 Aligned_cols=52 Identities=37% Similarity=0.780 Sum_probs=42.3
Q ss_pred CCCcceeecccccC-----------CCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVD-----------GAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~-----------~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
++.+|+||++++++ ++.++.+| |+|.||.+||++|++.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45667777777754 45566776 999999999999999999999999987643
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.52 E-value=6e-15 Score=100.84 Aligned_cols=50 Identities=32% Similarity=0.646 Sum_probs=44.4
Q ss_pred CCCcceeecccccCC-CceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
++.+|+||++++.++ +..+.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 567899999999664 45788999999999999999999999999999875
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=6.8e-15 Score=105.86 Aligned_cols=56 Identities=25% Similarity=0.580 Sum_probs=48.6
Q ss_pred CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..++.+|+||++.+.+. +....++|||.||..||++|++.+.+||+||+++..++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34677899999999763 566889999999999999999999999999999987664
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=103.61 Aligned_cols=53 Identities=26% Similarity=0.633 Sum_probs=46.1
Q ss_pred CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..++.+|+||++.|.+. +.+..++|+|.||..||++|++.+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34677899999999764 445789999999999999999999999999998865
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.47 E-value=2.5e-14 Score=112.68 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=43.3
Q ss_pred CCCcceeecccccCCC---------------ceEEeCCCCccChhhHHHHH-----hcCCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGA---------------ELYTLPCNHHFHCGCISKWL-----RINATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~---------------~lr~LpC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~~~ 299 (303)
.+.+|+||+++|.++. .++.+||+|.||..||++|+ +.+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999997653 34588999999999999999 4577999999987543
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.47 E-value=2.4e-14 Score=111.58 Aligned_cols=50 Identities=34% Similarity=0.715 Sum_probs=43.8
Q ss_pred CCCcceeecccccCC---------------CceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDG---------------AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~---------------~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
++..|+||++.|++. ..++.+||+|.||..||++||+.+.+||+||++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 567899999999865 13678899999999999999999999999999853
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=105.27 Aligned_cols=54 Identities=30% Similarity=0.741 Sum_probs=45.7
Q ss_pred CCCCCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~ 300 (303)
..++.+|.||+++|++++.+ .+||+ |.||.+||++|++.+ .+||+||+++..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567899999999888776 69996 999999999999876 49999999986544
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=102.16 Aligned_cols=54 Identities=26% Similarity=0.592 Sum_probs=47.5
Q ss_pred CCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 248 EDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 248 ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
++.+|+||++.+.+. +....++|||.||.+|+.+|++.+.+||+||+++..++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 567899999999763 456889999999999999999999999999999987664
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-14 Score=102.56 Aligned_cols=51 Identities=33% Similarity=0.998 Sum_probs=45.8
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
.++.+|+||++.+.+ ..+||+|.||..||.+|++.+.+||+||+++...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 456789999999877 789999999999999999999999999999987654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-14 Score=103.09 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=44.3
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
.++.+|+||++.+.+. ..+||+|.||..||++|++.+.+||+||+++..+
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4567899999998765 7789999999999999999999999999998654
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=99.99 Aligned_cols=53 Identities=26% Similarity=0.599 Sum_probs=46.0
Q ss_pred CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i 302 (303)
.++..|+||++.+.+. ..+ +|+|.||..||.+|++.+.+||+||+++..++.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 4567899999999875 454 9999999999999999999999999999877654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=1.2e-13 Score=98.47 Aligned_cols=50 Identities=40% Similarity=0.877 Sum_probs=43.7
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
.++.+|+||++.+.++ ...+||||.||..|+.+|++.+.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3567899999998753 5789999999999999999999999999998753
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=99.16 Aligned_cols=54 Identities=31% Similarity=0.623 Sum_probs=45.7
Q ss_pred CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC--CCCcccccCccCCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIRRGDTL 302 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~i 302 (303)
..++..|+||++.+.+. ..+| |+|.||..||.+|++.+ .+||+||+++...+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 34567899999999876 6799 99999999999999876 6899999987765544
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=100.86 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=47.2
Q ss_pred CCCCCcceeecccccCCCc-eEEeCCCCccChhhHHHHHhcC---CCCcccccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~ 300 (303)
..++.+|+||++.|.+++. .+.+||||.||..|+.+|++.+ .+||+||+++..++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3456789999999998764 6889999999999999999876 79999999886654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=95.80 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=44.7
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHH-hcCCCCcccccCccCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRGDT 301 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~~~ 301 (303)
.++..|+||++.+.+. ..++|||.||..||.+|+ +.+.+||+||+++..++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4567899999999876 347999999999999999 456799999999987764
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.36 E-value=6.7e-14 Score=110.75 Aligned_cols=50 Identities=34% Similarity=0.712 Sum_probs=1.2
Q ss_pred CCCcceeecccccCC-------------C--ceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDG-------------A--ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~-------------~--~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
+++.|+||+++|++. + .+..+||+|.||..||++||+.+.+||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 567899999999762 2 2344689999999999999999999999999854
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.5e-13 Score=96.34 Aligned_cols=53 Identities=32% Similarity=0.621 Sum_probs=45.0
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlCR~~I~~~~~ 301 (303)
..++..|+||++.+.+. ..+||||.||..||.+|++ .+.+||+||+++..++.
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34677899999998864 6779999999999999997 45689999999987653
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.9e-13 Score=98.39 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=43.3
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
..++..|+||++.+.+. ..+||+|.||..||.+|++.+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999775 57999999999999999999999999999875
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=4.3e-12 Score=93.92 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=45.1
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc------CCCCcccccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI------NATCPLCKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~~ 300 (303)
..++.+|+||++.+.+. ..+||+|.||..|+.+|++. +..||+||+++..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999999876 57899999999999999987 678999999987654
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=1.4e-12 Score=104.69 Aligned_cols=54 Identities=26% Similarity=0.619 Sum_probs=47.4
Q ss_pred CCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
.++.+|+||++.|.++ +....++|||.||.+||++|++.+.+||+||+++..++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4567899999999764 56689999999999999999999999999999987654
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=9.1e-13 Score=107.38 Aligned_cols=48 Identities=31% Similarity=0.950 Sum_probs=42.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++..|+||++.|.++ ..+||||.||..||.+|++.+.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345799999999775 789999999999999999999999999999864
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4.5e-12 Score=92.01 Aligned_cols=50 Identities=26% Similarity=0.597 Sum_probs=42.5
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~ 299 (303)
...+|+||.+.+..++.. ..|+|.||..||++||+.+ .+||+||++...+
T Consensus 14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 457899999999877433 3799999999999999987 8999999987644
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5e-12 Score=93.59 Aligned_cols=53 Identities=25% Similarity=0.659 Sum_probs=45.3
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc------CCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI------NATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~~~ 301 (303)
..++.+|+||++.+.+. ..+||+|.||..|+.+|++. +.+||+||..+..++.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 34567899999999876 56799999999999999987 7899999999876543
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=3.3e-12 Score=93.48 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=44.9
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~ 300 (303)
+++..|+||++.+.++ ..+||||.||..||.+|++. +.+||+||+++..++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4677899999999876 67899999999999999987 789999999987654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.1e-12 Score=87.66 Aligned_cols=44 Identities=34% Similarity=0.656 Sum_probs=38.3
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCccc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLC 292 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlC 292 (303)
..++..|+||++.+.+. ..+||||.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34677899999999876 6789999999999999998 45689998
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=95.81 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=43.9
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-------CCCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-------NATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~~~~ 300 (303)
.++.+|+||++.|.+. ..+||||.||..||.+|++. +.+||+||.++..++
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 4577899999999876 45899999999999999987 678999999987643
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=1.2e-12 Score=100.75 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=43.7
Q ss_pred CCCcceeecccccCCCceEE-eCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~ 300 (303)
++..|+||++.+.+. .. ++|||.||..||.+|++.+ .+||+||+++..++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 567899999999864 55 8999999999999999887 69999999987654
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=5.4e-12 Score=89.19 Aligned_cols=54 Identities=20% Similarity=0.522 Sum_probs=44.0
Q ss_pred CCCcceeecc-cccCCCce-EEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069 248 EDSDCCICLS-QYVDGAEL-YTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT 301 (303)
Q Consensus 248 ed~~C~ICL~-~y~~~~~l-r~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~ 301 (303)
++..|+||++ .+.++... ..++|||.||..||++|+.. +.+||+||+++.+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 4578999999 77776543 46899999999999999754 4689999999987654
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.4e-12 Score=86.45 Aligned_cols=44 Identities=27% Similarity=0.871 Sum_probs=37.6
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHH---hcCCCCccc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---RINATCPLC 292 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL---~~~~tCPlC 292 (303)
..++..|+||++.+.+. ..+||+|.||..||.+|+ +.+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999886 568999999999999995 456799998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=4.7e-12 Score=101.49 Aligned_cols=56 Identities=25% Similarity=0.578 Sum_probs=48.2
Q ss_pred CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
.+++.+|+||++.+++. .....++|||.||..||++|++.+.+||+||+++.+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 34667899999999763 445788999999999999999999999999999987653
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.19 E-value=3.9e-12 Score=97.57 Aligned_cols=50 Identities=26% Similarity=0.675 Sum_probs=43.3
Q ss_pred CCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
++..|+||++.|.++ ..+ ||||.||..||.+|++.+.+||+||+++..++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 457899999999874 455 89999999999999999999999999887543
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=92.26 Aligned_cols=50 Identities=30% Similarity=0.622 Sum_probs=42.9
Q ss_pred CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC--CCCcccccCccC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIRR 298 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~ 298 (303)
..++..|+||++.|.++ ..+| |||.||..||.+|++.+ .+||+||.++..
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 34678899999999876 6899 99999999999999754 589999999743
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.14 E-value=1.5e-11 Score=95.84 Aligned_cols=50 Identities=24% Similarity=0.703 Sum_probs=43.2
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
++..|+||++.+.+. +..+||||.||..||.+|++.+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 567899999999764 33349999999999999999999999999998764
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=1.3e-11 Score=98.49 Aligned_cols=48 Identities=27% Similarity=0.707 Sum_probs=42.2
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~ 298 (303)
++..|+||++.+.++ ..+||||.||..||.+|++.+. +||+||+++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456799999999875 6789999999999999998554 99999999876
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=3.7e-11 Score=93.79 Aligned_cols=51 Identities=31% Similarity=0.637 Sum_probs=43.1
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC---CCcccccCccCCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA---TCPLCKYNIRRGDT 301 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~---tCPlCR~~I~~~~~ 301 (303)
++..|+||++.+.+. ..+||||.||..||.+|++.+. +||+||.++..++.
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 346799999999876 4589999999999999998764 89999999876553
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.06 E-value=3.7e-11 Score=95.12 Aligned_cols=51 Identities=27% Similarity=0.579 Sum_probs=44.0
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~~ 300 (303)
.++..|+||++.+.++ ..+||||.||..||.+|++.+. +||+||.++..++
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3567899999999876 6789999999999999998765 9999999987654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=4.9e-11 Score=99.87 Aligned_cols=50 Identities=32% Similarity=0.650 Sum_probs=42.2
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~ 299 (303)
++..|+||++.|.+. +..+||||.||..||++|++. +.+||+||.++...
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 456899999999874 444599999999999999987 78999999998543
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=3.8e-11 Score=94.62 Aligned_cols=50 Identities=30% Similarity=0.651 Sum_probs=43.5
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~ 300 (303)
++..|+||++.+.++ ..+||||.||..||.+|++. +.+||+||+++..++
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 356799999998775 56899999999999999987 789999999987654
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=2.3e-11 Score=95.79 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=42.0
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCcc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIR 297 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 297 (303)
.++..|+||++.+.+. ..+||||.||..||.+|++. +.+||+||+++.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3467899999999876 67899999999999999976 678999999875
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.02 E-value=7.4e-11 Score=97.47 Aligned_cols=49 Identities=18% Similarity=0.542 Sum_probs=43.0
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~ 299 (303)
++..|+||++.+.++ ..+||||.||..||.+|++.+. +||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456899999999876 5689999999999999998764 899999998876
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=2.2e-10 Score=84.16 Aligned_cols=54 Identities=15% Similarity=0.359 Sum_probs=42.1
Q ss_pred CCCCcceeecccccCCCceEEe--CCCCccChhhHHHHHh-cCCCCcccccCccCCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTL--PCNHHFHCGCISKWLR-INATCPLCKYNIRRGDT 301 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~~ 301 (303)
.++.+|+||++.+...+. +.+ +|||.||..|+.++.+ .+..||.||+++..++.
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467789999998864332 344 5999999999999874 35789999999876543
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.97 E-value=1.2e-10 Score=82.29 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=40.1
Q ss_pred CCCcceeecccccCCCceEEe--CCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTL--PCNHH-FHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
++.+|.||++...+. ..+ ||||. |+.+|+.+|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999986554 444 99999 799999999999999999999885
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.4e-10 Score=79.64 Aligned_cols=47 Identities=26% Similarity=0.564 Sum_probs=40.2
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
++..|+||++.|.+. +.|||+|.||..|+.+| +.+||+||+++...+
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 567799999999876 67999999999999884 678999999986543
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.95 E-value=2.1e-10 Score=107.84 Aligned_cols=50 Identities=26% Similarity=0.696 Sum_probs=43.5
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCcccccCccCCCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRRGDT 301 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~~ 301 (303)
..+|+||++.+.+ ...+||||.||..|+.+|++ .+.+||+||+++...+.
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 4689999999865 47899999999999999998 78899999999876543
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.95 E-value=6.8e-10 Score=85.09 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=47.4
Q ss_pred CCCCCcceeecccccCCCceEEeCCC-CccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCN-HHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
.+++..|+||++-+.++ ..+||| |.|+..||.+|++.+.+||+||.++..++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 45678899999999987 789999 999999999999989999999999876654
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.95 E-value=3.7e-10 Score=84.28 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
.+++..|+||++-+.++ ..+||||.|...||.+|++.+.+||.||.++..++
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 35678899999999987 78999999999999999998999999999887654
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.94 E-value=5.3e-10 Score=86.03 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=47.9
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..+++..|+||++-+.++ ..+||||.|+..||.+|+..+.+||.||.++..++.
T Consensus 25 ~~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred cCcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 345778899999999987 789999999999999999989999999999877653
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=3.1e-10 Score=92.71 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=42.8
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRR 298 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~ 298 (303)
..++..|+||++.+.++ ..++|||.||..||.+|++.+. +||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 34567899999999887 6689999999999999998665 89999998643
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.88 E-value=3.4e-10 Score=79.60 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=39.8
Q ss_pred CCCcceeecccccCCCceEEe--CCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTL--PCNHH-FHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
.+.+|.||++...+. ..+ ||||. |+.+|+.+|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356799999976553 344 99998 999999999988899999999985
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=3.6e-10 Score=89.28 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=42.2
Q ss_pred CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
.++..|+||++.|.+. ..+ ||||.||..||.+|++ ..||+||.++...+
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 3567899999999876 566 8999999999999988 88999999986544
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=1.3e-10 Score=84.43 Aligned_cols=44 Identities=27% Similarity=0.596 Sum_probs=38.3
Q ss_pred CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++..|+||++.+.+. ..+||||. |+..|+.+| .+||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456899999987664 78899999 999999999 899999998864
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=1.4e-09 Score=75.70 Aligned_cols=47 Identities=32% Similarity=0.753 Sum_probs=37.5
Q ss_pred CCCcceeecccccCCCceEEeCCC--C---ccChhhHHHHHhc--CCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCN--H---HFHCGCISKWLRI--NATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~ 297 (303)
+...|.||+++. ++++ .+||. | .||.+|+++|++. +.+||+||++..
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 557899999983 3344 68965 4 9999999999965 679999998764
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.83 E-value=5.2e-10 Score=102.62 Aligned_cols=51 Identities=29% Similarity=0.793 Sum_probs=40.8
Q ss_pred CCCCcceeecccccCCCceE-----EeCCCCccChhhHHHHHhcC-----------CCCcccccCcc
Q 022069 247 PEDSDCCICLSQYVDGAELY-----TLPCNHHFHCGCISKWLRIN-----------ATCPLCKYNIR 297 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr-----~LpC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~ 297 (303)
....+|+||++.+.++.++- ..+|+|.||..|+.+||+.. .+||.||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999998844332 24699999999999999753 47999999875
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.6e-09 Score=74.49 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=38.8
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
...++..|.||++...+ ...+||+|. |+..|+.+ ...||+||++|..
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34457789999987654 588999999 99999984 5799999998864
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.73 E-value=2.4e-09 Score=89.83 Aligned_cols=51 Identities=27% Similarity=0.570 Sum_probs=43.8
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD 300 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~ 300 (303)
.++..|+||++.+.++ ..++|||.|+..||.+|++.+ .+||+||.++..++
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 4567899999999876 668999999999999999765 49999999987654
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.9e-09 Score=78.27 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=37.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~~ 300 (303)
++.+|+||++.+.+. ..+||||. |+..|+.+ ...||+||+++...-
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 456799999987664 67899999 99999965 478999999987643
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=8.2e-09 Score=92.63 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=45.3
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD 300 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~ 300 (303)
..+++..|+||++-+.++ ..+||||.|+..||.+|++.+ .+||+||.++..++
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 345678899999999987 789999999999999999864 45999999987554
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=5.2e-09 Score=79.40 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=41.6
Q ss_pred CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC------CCCcc--cccC-ccCC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN------ATCPL--CKYN-IRRG 299 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~------~tCPl--CR~~-I~~~ 299 (303)
.++..|+||++-|.++ ..+| |||.|+..||.+|++.+ .+||+ |+.. +..+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 4667899999999986 6786 99999999999999764 48999 9866 5443
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1e-08 Score=77.68 Aligned_cols=51 Identities=22% Similarity=0.590 Sum_probs=41.7
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--------CCCCcc--cccC--ccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--------NATCPL--CKYN--IRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--------~~tCPl--CR~~--I~~ 298 (303)
+..+|+||++++.+++.++..+|+|.|+.+|+.++++. ..+||. ||.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 45689999999987766666689999999999999964 237999 9987 543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.49 E-value=1.6e-08 Score=74.18 Aligned_cols=44 Identities=23% Similarity=0.685 Sum_probs=36.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
++..|.||++...+ ...+||||. |+..|+.+| ..||+||+++..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 34679999988655 478999999 999999987 499999998754
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=4.1e-08 Score=83.02 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=44.8
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~ 300 (303)
.+++..|+||++-+.++ ..+||||.|...||.+|+..+ .+||.||.++...+
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 45678899999999986 778999999999999999874 47999999887654
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.38 E-value=6.2e-08 Score=67.51 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=43.6
Q ss_pred CcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..|+||++-+++. ..+ +|||.|-..||.+|++.+.+||+++.++..++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 5699999999976 667 899999999999999999999999999877664
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=8.7e-08 Score=89.24 Aligned_cols=45 Identities=27% Similarity=0.708 Sum_probs=39.1
Q ss_pred CCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
.++..|+||++.+.+. ..+||||. ||..|+.+| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4567899999998764 77899999 999999998 789999998864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.6e-07 Score=81.23 Aligned_cols=53 Identities=26% Similarity=0.460 Sum_probs=43.6
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcc--cccCccCCC
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPL--CKYNIRRGD 300 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~~~~ 300 (303)
...+..|+||++.|.++ ++.+.|||.|+..||.+|++.+ .+||. ||+.+..++
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 34567899999999776 5556899999999999999765 47999 999876554
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=6.4e-06 Score=62.21 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=35.4
Q ss_pred ceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccC
Q 022069 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRR 298 (303)
Q Consensus 252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~ 298 (303)
|.+|--.+. ...|..||+|+|+.+|+..|.++ ..+||.|+.++..
T Consensus 4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 555544433 34699999999999999999854 6899999998853
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.77 E-value=1.8e-05 Score=69.89 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=40.7
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCC--CCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINA--TCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~--tCPlCR~~I~~~ 299 (303)
...+|.||-+-...+ ...+ |+|.||..|+++|++.+. +||.|+.+...+
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998877 3444 999999999999998754 999999987654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.01 E-value=0.027 Score=41.76 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=37.5
Q ss_pred CCcceeecccccCCCceEEeCCC-CccChhhHHHHHhcCCCCcccccCccCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCN-HHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
...|..|+-+.. ....|+ |.++..|+..-|.....||+|+.++..+
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 356999987643 255665 9999999999999999999999988654
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.92 E-value=0.017 Score=40.35 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=33.8
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI 296 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I 296 (303)
..+..|.||-+ .++.+.--.|...||..|++..+.... .||.|++.-
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34577999964 244443334999999999998886543 699997654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.24 E-value=0.019 Score=43.00 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHH-HH
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK-WL 283 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~-WL 283 (303)
++..|.||.++|..+....-++|+|.|+..|+.. |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4577999998765554556699999999999998 54
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.05 E-value=0.11 Score=37.64 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=25.2
Q ss_pred cCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHH
Q 022069 244 ALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKW 282 (303)
Q Consensus 244 ~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~W 282 (303)
.....|..|.||- .+..++....=-|+-+||..|+++-
T Consensus 10 e~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 3445778899983 3444432222227899999999995
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.57 E-value=0.052 Score=37.28 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=35.1
Q ss_pred CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYN 295 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 295 (303)
.++..|++|-..|.++.....-. |...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35677999999987655444444 999999999875432 23469999754
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.83 E-value=0.1 Score=38.39 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCCCCcceeecccc-cCCCceEEeC-CCCccChhhHHHHHh--cCCCCcccccCccC
Q 022069 245 LHPEDSDCCICLSQY-VDGAELYTLP-CNHHFHCGCISKWLR--INATCPLCKYNIRR 298 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y-~~~~~lr~Lp-C~H~FH~~CI~~WL~--~~~tCPlCR~~I~~ 298 (303)
...++..|.||...- .+++.+..-. |.-.||..|+..=+. ..=.||.|+.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 345678899998764 2333444444 889999999985321 12259999765443
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.55 E-value=0.12 Score=33.69 Aligned_cols=44 Identities=27% Similarity=0.521 Sum_probs=29.6
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKY 294 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~ 294 (303)
.|.+|...-++++.+.--.|...||..|++.=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588887765444444444499999999997544332 24999965
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.09 E-value=0.07 Score=37.87 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=34.7
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhc----CCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI----NATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~----~~tCPlCR~~I~~~ 299 (303)
++..|.+|-.... ++.+..-. |...||..|+..-... .-.||.|+..+.+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 3455999987764 33333443 9999999999865432 23599998876554
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.24 E-value=0.17 Score=34.39 Aligned_cols=46 Identities=20% Similarity=0.544 Sum_probs=31.7
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYN 295 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~ 295 (303)
.++..|.+|-.. ++.+.--.|...||..|++.=+... =.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356779999763 4333333488999999999755332 259999753
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.64 E-value=0.12 Score=35.28 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=33.1
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~ 299 (303)
++..|.+|-.. ++.+.-=.|...||..|++.=+... =.||.|+....++
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~ 60 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence 45679999752 4333333488999999998655432 2599998765554
No 83
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=87.35 E-value=0.048 Score=37.05 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=34.9
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCccCCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNIRRGDT 301 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~~~ 301 (303)
++..|.+|-.. ++.+.--.|...||..|++.=+... =.||.|+....+++.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEE 58 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTT
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhc
Confidence 46779999864 4444434499999999999655432 259999776655443
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.72 E-value=0.083 Score=35.32 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=30.9
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKY 294 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~ 294 (303)
.++..|.+|-.. ++.+.--.|...||..|++.=+.... .||.|++
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356779999864 44443344999999999986554322 4988864
No 85
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.53 E-value=0.089 Score=39.08 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=33.1
Q ss_pred CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKY 294 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~ 294 (303)
...++..|.||-..-.+++.+..=.|...||..|++.=+.... .||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3345677999988754433333334999999999985443322 4999965
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.51 E-value=0.57 Score=33.43 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=31.4
Q ss_pred CcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccCc
Q 022069 250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYNI 296 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I 296 (303)
..-+||-..++++.....-. |...||..|+.-=-. ..-.||.|+..-
T Consensus 12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 33449999886444444444 999999999963221 234699998653
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.91 E-value=0.21 Score=38.09 Aligned_cols=38 Identities=18% Similarity=0.488 Sum_probs=28.0
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR 284 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~ 284 (303)
.++..|.+|-+.-+.++.+.--.|...||..|++..+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 46778999987743333355556999999999988764
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.06 E-value=0.3 Score=34.64 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=31.8
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHH---------hcCCCCcccccCccC
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---------RINATCPLCKYNIRR 298 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL---------~~~~tCPlCR~~I~~ 298 (303)
.-+||-..+..+..+..-.|...||..|+.--. ..+-.||.|+..-.+
T Consensus 17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 444898887654444444599999999985321 235679999765443
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.68 E-value=0.22 Score=34.43 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=32.0
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI 296 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I 296 (303)
.++..|.+|-.. ++.+..=.|...||..|++.=+.... .||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356789999863 43333334999999999986544322 599996643
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=83.53 E-value=0.33 Score=31.80 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=29.9
Q ss_pred cceeecccccCCCceEEe--CCCCccChhhHHHHH----hcCCCCcccc
Q 022069 251 DCCICLSQYVDGAELYTL--PCNHHFHCGCISKWL----RINATCPLCK 293 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL----~~~~tCPlCR 293 (303)
.|++|...|.+++....- .|...||..|+.--- ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478999998766544443 488899999986422 2456799885
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.35 E-value=0.63 Score=34.16 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=33.1
Q ss_pred CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069 246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI 296 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I 296 (303)
..++..|.+|-.. ++.+..-.|.-.||..|+++=+.... .||.|+..-
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 4456789999864 44343334889999999987554422 599997643
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.96 E-value=0.62 Score=32.09 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=26.2
Q ss_pred CCCCCcceeecccccCCCceEEe--CCCCccChhhHHH
Q 022069 246 HPEDSDCCICLSQYVDGAELYTL--PCNHHFHCGCISK 281 (303)
Q Consensus 246 ~~ed~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~ 281 (303)
++....|++|...|.+++....- .|.-.||..|+.-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 34566799999999877665554 5999999999853
No 93
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.03 E-value=0.21 Score=35.11 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCcceeecccccCCCceEEeC-CCCccChhhHHHHH----hcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL----RINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL----~~~~tCPlCR~~I~~ 298 (303)
...| ||-..+.+++....-. |...||..|+.--- ..+-.||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 3457 7988876665444444 99999999987532 123469999765433
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.47 E-value=1 Score=33.25 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=28.7
Q ss_pred CCcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 298 (303)
+...+||-.... ++.+..=. |. ..||..|+. |... -.||.|+..-.+
T Consensus 35 e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 35 EPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 344449987653 43332223 54 689999997 4332 359999876544
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.69 E-value=0.41 Score=35.80 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=29.4
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhc---CCCCccccc
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI---NATCPLCKY 294 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~---~~tCPlCR~ 294 (303)
.| ||-...+++..+..=.|.-.||..|+..=... .-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 35 89887766654444459999999998753221 136999974
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.23 E-value=0.95 Score=31.71 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=27.6
Q ss_pred CCcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~~I~~ 298 (303)
+.-| ||-.... ++.+..=. |. ..||..|+. |... -.||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence 3445 8977643 43222222 55 689999998 4332 259999875443
No 97
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.03 E-value=1 Score=46.71 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCCCCCcceeecccccCCCceEEeCCC-CccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 245 LHPEDSDCCICLSQYVDGAELYTLPCN-HHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..++...|+|-++-+.|+ ..+|-| |.|-..+|.+|+..+.+||.=|.++..++.
T Consensus 887 ~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 456677899999999987 789987 589999999999999999999998876543
No 98
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.74 E-value=0.42 Score=33.28 Aligned_cols=46 Identities=15% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCccccc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlCR~ 294 (303)
+...| ||-..+..+..+..-.|...||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44456 9988776433343344999999999874221 1236999864
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.93 E-value=0.73 Score=35.17 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=29.4
Q ss_pred cceeecccccCCCceEEeC-CCCccChhhHHHHHhcC----CCCccccc
Q 022069 251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN----ATCPLCKY 294 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~----~tCPlCR~ 294 (303)
.|.+|...-++++.+..-. |...||..|++.=|... =.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5778876533333444444 99999999998655432 25999975
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=75.88 E-value=1.2 Score=30.30 Aligned_cols=50 Identities=20% Similarity=0.524 Sum_probs=33.9
Q ss_pred CCCCcceeecccccC-CCceEEeC-CCCccChhhHHHHHhc-------CCCCcccccCc
Q 022069 247 PEDSDCCICLSQYVD-GAELYTLP-CNHHFHCGCISKWLRI-------NATCPLCKYNI 296 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~-~~~lr~Lp-C~H~FH~~CI~~WL~~-------~~tCPlCR~~I 296 (303)
.++..|.+|.....+ +..+..-. |...||..|++.=+.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 466789999987543 33444444 9999999998864321 23599997654
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=75.26 E-value=0.56 Score=38.54 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=31.8
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCccccc
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~ 294 (303)
++..| +|-..+.++.....-. |...||..|+.---. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 44567 9999887555554544 999999999953221 2346999975
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.10 E-value=0.47 Score=33.89 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=28.8
Q ss_pred CcceeecccccCCCceEEe-CCCCccChhhHHHHHhcC-----CCCccccc
Q 022069 250 SDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRIN-----ATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~-----~tCPlCR~ 294 (303)
..|.+|...-..+ ++..- .|...||..|++.=|... =.||.|+.
T Consensus 27 c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688897653333 33344 499999999998544321 25999965
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.62 E-value=3.2 Score=31.51 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCcceeeccccc------CCCceEEeCCCCccChhhHHH
Q 022069 248 EDSDCCICLSQYV------DGAELYTLPCNHHFHCGCISK 281 (303)
Q Consensus 248 ed~~C~ICL~~y~------~~~~lr~LpC~H~FH~~CI~~ 281 (303)
....|.+|+..-+ .++.+.--.|+..||..|++.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 3567999987632 223344445999999999963
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=73.16 E-value=2.3 Score=29.69 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=32.1
Q ss_pred CCCCCcceeecccc-cCCCceEEeC-CCCccChhhHHHHHhc--CCCCccccc
Q 022069 246 HPEDSDCCICLSQY-VDGAELYTLP-CNHHFHCGCISKWLRI--NATCPLCKY 294 (303)
Q Consensus 246 ~~ed~~C~ICL~~y-~~~~~lr~Lp-C~H~FH~~CI~~WL~~--~~tCPlCR~ 294 (303)
..++..|.||...- .+++++..-. |.-.||..|+..=..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44667899998764 3334444444 9999999999753211 125888865
No 105
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.97 E-value=1.6 Score=30.98 Aligned_cols=50 Identities=16% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCcceeecccccCCCceEEe--CCCCccChhhHHHHHh---------cCCCCcccccCccCC
Q 022069 249 DSDCCICLSQYVDGAELYTL--PCNHHFHCGCISKWLR---------INATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL~---------~~~tCPlCR~~I~~~ 299 (303)
...| ||-....++..+..= .|...||..|+.-=-. .+-.||.|+..-.+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 3445 888875555444444 5999999999964221 234699998754443
No 106
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=70.62 E-value=1.9 Score=32.57 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=34.3
Q ss_pred CCcceeecccccCCCceEEe--CCCCccChhhHHHHHh----------cCCCCcccccCc
Q 022069 249 DSDCCICLSQYVDGAELYTL--PCNHHFHCGCISKWLR----------INATCPLCKYNI 296 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL~----------~~~tCPlCR~~I 296 (303)
...|.||...|.++.....- .|...||..|+.-=-. .+-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45699999999776665555 4899999999863210 234699997643
No 107
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=69.55 E-value=3.2 Score=31.45 Aligned_cols=44 Identities=25% Similarity=0.567 Sum_probs=28.1
Q ss_pred CCCCcceeecccccCCCceEEe---CCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069 247 PEDSDCCICLSQYVDGAELYTL---PCNHHFHCGCISKWLRINA----TCPLCKYNI 296 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~L---pC~H~FH~~CI~~WL~~~~----tCPlCR~~I 296 (303)
.++..|.+|-+ .+ ++..- .|...||..|+. |.... .||-|+-.+
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 35667999973 23 34343 388999999998 54322 488665433
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=68.22 E-value=0.57 Score=32.75 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=27.0
Q ss_pred cceeecccccCCCceEEeC-CCCccChhhHHHHHhc-----CCCCccccc
Q 022069 251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI-----NATCPLCKY 294 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~-----~~tCPlCR~ 294 (303)
.|.+|...-. +..+..-. |...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667765422 33344444 8899999999854432 225999975
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.69 E-value=0.7 Score=32.99 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=26.8
Q ss_pred cceeecccccCCCceEEeC-CCCccChhhHHHHHhcC-----CCCcccccC
Q 022069 251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN-----ATCPLCKYN 295 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~-----~tCPlCR~~ 295 (303)
.|.+|-..-+++ .+..-. |...||..|++.=|... =.||.|+++
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665543332 333333 88999999999755432 259999753
No 110
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=65.21 E-value=0.86 Score=30.78 Aligned_cols=43 Identities=26% Similarity=0.658 Sum_probs=25.4
Q ss_pred CCcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCccccc
Q 022069 249 DSDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKY 294 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~ 294 (303)
+...+||-.... ++.+.-=. |. ..||..|+. |... -.||.|++
T Consensus 9 e~~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEETTTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEEECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344458987643 42222122 44 689999998 4432 25999964
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=65.14 E-value=0.9 Score=30.59 Aligned_cols=42 Identities=26% Similarity=0.611 Sum_probs=25.6
Q ss_pred CcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCccccc
Q 022069 250 SDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~ 294 (303)
...++|-... .++.+.-=. |. ..||..|+. +... =.||.|++
T Consensus 9 ~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEEECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3444997764 343222223 55 699999998 4332 25999965
No 112
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=63.37 E-value=0.53 Score=32.60 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=27.1
Q ss_pred CcceeecccccCCCceEEe---CCCCccChhhHHHHH---h-----cCCCCccccc
Q 022069 250 SDCCICLSQYVDGAELYTL---PCNHHFHCGCISKWL---R-----INATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~L---pC~H~FH~~CI~~WL---~-----~~~tCPlCR~ 294 (303)
..-+||-...+++..+ .- .|...||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRCICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECCTTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEeECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3444887666655433 33 388899999984210 0 1245999974
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.94 E-value=2.3 Score=36.66 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=26.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-----CCCcccccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-----ATCPLCKYN 295 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-----~tCPlCR~~ 295 (303)
..|.+|-..=..++.+..=.|...||..|++.=|... =.||.|+.+
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3688887653333333333499999999999544332 249999753
No 114
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=59.46 E-value=3.4 Score=38.24 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=31.6
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhc-----CCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-----NATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-----~~tCPlCR~~I~~~~~ 301 (303)
..|++-...+.. .+|-..|.|.-|-+ +..||.. .-.||+|.+.+..++.
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCccccccc--cCcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 458876666554 47888899983222 2334432 3479999998876654
No 115
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.88 E-value=1.8 Score=31.58 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=34.1
Q ss_pred CCCcceeecccccC-CCceEEeC-CCCccChhhHHHHHhc--------CCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVD-GAELYTLP-CNHHFHCGCISKWLRI--------NATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~-~~~lr~Lp-C~H~FH~~CI~~WL~~--------~~tCPlCR~~I~ 297 (303)
++..|.+|...-.+ ++.+..-. |...||..|++.=+.. .=.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46679999987543 23444444 9999999999875531 125999976543
No 116
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.84 E-value=3.8 Score=37.75 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=31.7
Q ss_pred CcceeecccccCCCceEEeCCCCc--cChhhHHHHHhc--CCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHH--FHCGCISKWLRI--NATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~--FH~~CI~~WL~~--~~tCPlCR~~I~~~~~ 301 (303)
..|++=...+.. .+|-..|.|. |=..=.-+...+ .-.||+|.+.+..++.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 458876666654 4788889998 443222222222 2479999998876654
No 117
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.82 E-value=8.4 Score=30.64 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh------c-----CCCCcccccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR------I-----NATCPLCKYN 295 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~------~-----~~tCPlCR~~ 295 (303)
..+..|.+|-+. |+.+-.=.|...||..|+++=+. + .=.||.|+..
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 346779999764 44333334999999999997653 1 2269999753
No 118
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=53.07 E-value=2 Score=29.19 Aligned_cols=42 Identities=29% Similarity=0.634 Sum_probs=25.0
Q ss_pred CcceeecccccCCCceEEeC--CC-CccChhhHHHHHhc----CCCCccccc
Q 022069 250 SDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRI----NATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 294 (303)
...++|-... .++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEETTTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEEECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3444997763 343222222 44 899999998 332 235999965
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.24 E-value=7.6 Score=29.46 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=22.6
Q ss_pred CcceeecccccC-------CCceEEeCCCCccChhhHHHH
Q 022069 250 SDCCICLSQYVD-------GAELYTLPCNHHFHCGCISKW 282 (303)
Q Consensus 250 ~~C~ICL~~y~~-------~~~lr~LpC~H~FH~~CI~~W 282 (303)
..|.+|+..-.. ++.+.--.|+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 358899876421 233444459999999999865
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.22 E-value=0.85 Score=34.96 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=30.6
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCccC
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNIRR 298 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I~~ 298 (303)
.|.+|-..-.+++.+.--.|...||..|++.=+.... .||.|+....+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 4677766544443343344999999999986443322 49999765543
No 121
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=49.80 E-value=2.3 Score=27.60 Aligned_cols=45 Identities=16% Similarity=0.413 Sum_probs=28.3
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCccccc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLCKY 294 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlCR~ 294 (303)
..=+||-..+..+..+.--.|+.-||..|+.-=-. .+-.||.|+.
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 34457877665333343334999999999874321 2346999875
No 122
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.35 E-value=2.9 Score=31.57 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=28.4
Q ss_pred cceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCc
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNI 296 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I 296 (303)
.|.+|-..-+++..+.--.|...||..|++.=+... =.||.|+..-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 466676553333233333489999999998644332 2599886643
No 123
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=47.14 E-value=3.2 Score=31.31 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=17.1
Q ss_pred EEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069 266 YTLPCNHHFHCGCISKWLRINATCPLCKYNI 296 (303)
Q Consensus 266 r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I 296 (303)
+...||+.| ..=+.....||-|++.-
T Consensus 69 ~C~~CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred ChhhCcCee-----cccCCCCCCCcCCCCCc
Confidence 345688988 11234557899998753
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.08 E-value=13 Score=28.97 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=30.0
Q ss_pred CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHH------hc-----CCCCcccccC
Q 022069 247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL------RI-----NATCPLCKYN 295 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL------~~-----~~tCPlCR~~ 295 (303)
..+..|.+|-+. + ++..-. |-..||.+||++=+ +. .=.|+.|+.+
T Consensus 55 g~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 355679999754 3 333333 88999999999742 22 1269999654
No 125
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.01 E-value=23 Score=24.67 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=28.1
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
....|.-|-..+.+.+.+. .-+..||.+| -+|-.|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCC
Confidence 3456999988887665543 3577889888 346777766654
No 126
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.70 E-value=12 Score=25.70 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=25.3
Q ss_pred CCCCcceeecccccCCCceEEeCC-CCccChhhHHHH
Q 022069 247 PEDSDCCICLSQYVDGAELYTLPC-NHHFHCGCISKW 282 (303)
Q Consensus 247 ~ed~~C~ICL~~y~~~~~lr~LpC-~H~FH~~CI~~W 282 (303)
++..-|+||.++ ..+|.+.| +-.|+..|.++-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 356679999876 45889999 789999997763
No 127
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.60 E-value=34 Score=24.87 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=35.3
Q ss_pred CCCcceeeccccc---CCCceEEeC-CCCccChhhHHHHH-hcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYV---DGAELYTLP-CNHHFHCGCISKWL-RINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~---~~~~lr~Lp-C~H~FH~~CI~~WL-~~~~tCPlCR~~I~ 297 (303)
....|.||=++.- +++....-. |+--.+..|.+-=. +-++.||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3467999998863 343333233 77788999987654 34789999998875
No 128
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.40 E-value=7.6 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.901 Sum_probs=13.8
Q ss_pred HHhc-CCCCcccccCccCCC
Q 022069 282 WLRI-NATCPLCKYNIRRGD 300 (303)
Q Consensus 282 WL~~-~~tCPlCR~~I~~~~ 300 (303)
|+.. ...||-|+..|.+.+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 4433 367999999988765
No 129
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.24 E-value=2.2 Score=25.47 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=3.7
Q ss_pred CcccccCc
Q 022069 289 CPLCKYNI 296 (303)
Q Consensus 289 CPlCR~~I 296 (303)
||+|++.+
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 55554443
No 130
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.76 E-value=18 Score=24.68 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=27.6
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
...|.-|-..+.+++.+. .-+..||.+| -+|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCC
Confidence 356888888887665443 3567888877 347788777654
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.49 E-value=9.3 Score=26.18 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=21.3
Q ss_pred CCCcceeecccccCCCceEEeCCCCccCh-hhHHHHHhcCCCCccccc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHC-GCISKWLRINATCPLCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~-~CI~~WL~~~~tCPlCR~ 294 (303)
+-..|..|-..+..+. . ...=+..|+. .|-.+- ....|--|..
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 3455667766665542 1 1223455555 465442 3445666643
No 132
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=41.94 E-value=14 Score=25.59 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCCcceeecccccCCCceEEe-CCCCccChhhHHHHHh-----cCCCCcccccC
Q 022069 248 EDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLR-----INATCPLCKYN 295 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 295 (303)
....-+||-..+.++.....- .|.-.||..|+.---. ..-.||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345566998887654444444 4999999999964321 12469999764
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.37 E-value=30 Score=24.49 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=33.8
Q ss_pred CCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhc--------CCCCcccccCccCCC
Q 022069 248 EDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRI--------NATCPLCKYNIRRGD 300 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~ 300 (303)
+...|.+|-..|.--..-.-- .||++|+..|-...... ...|-.|-..+..++
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~ 81 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN 81 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence 445799999998754332333 49999999997765321 235766655444433
No 134
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.25 E-value=25 Score=24.17 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=27.5
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
....|.-|-..+.+. ....-+..||.+|. +|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 456799998887753 33446788998884 5777777664
No 135
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.55 E-value=24 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.594 Sum_probs=28.4
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
....|.-|-..+.+++.+.. -+..||.+| -+|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 34569999888877665544 367888887 45778877765
No 136
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.20 E-value=9.6 Score=25.58 Aligned_cols=41 Identities=24% Similarity=0.626 Sum_probs=28.6
Q ss_pred CcceeecccccCCCceEEeC-CCCccChhhHHHHHhc-CCCCccc
Q 022069 250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI-NATCPLC 292 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~-~~tCPlC 292 (303)
..|--|...+.+.. ...-| |+++|+.+| |..+.. =.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35888988886432 23445 999999999 555433 3689988
No 137
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.08 E-value=6.5 Score=22.27 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=9.4
Q ss_pred CCCCcccccCccC
Q 022069 286 NATCPLCKYNIRR 298 (303)
Q Consensus 286 ~~tCPlCR~~I~~ 298 (303)
+.+||.||...+.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3579999887654
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.55 E-value=38 Score=23.79 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=28.5
Q ss_pred CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
....|.-|-..+.+. . ...-+..||.+| -+|-.|+.++..+
T Consensus 24 ~~~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA-V--VKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSC-C--EESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEeccc-E--EEECCceECccC--------CEecCCCCCCCCC
Confidence 446699998887752 2 334678899888 3578888877643
No 139
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.71 E-value=58 Score=22.81 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=26.7
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
...|.-|-..+.+ + ....-+..||.+| -+|-.|+.++..
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccC--------CccCCCCCCCCC
Confidence 4568888888753 2 2334578889887 357788877754
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.41 E-value=23 Score=24.37 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.1
Q ss_pred CCcceeecccccCCCceEEe-CCCCccChhhHHHH
Q 022069 249 DSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKW 282 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~W 282 (303)
+..|.+|-..|.--..-.-- .||++|+..|-...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35799999998754322333 49999999997543
No 141
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.51 E-value=41 Score=23.72 Aligned_cols=40 Identities=23% Similarity=0.565 Sum_probs=22.6
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
...|.-|-..+.+.+.+ ..-+..||.+|. +|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCC
Confidence 34577777766655433 345666776662 35555555543
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.54 E-value=17 Score=28.44 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=24.2
Q ss_pred CCCcceeeccccc--CCCceEEeCCCCccChhhHH
Q 022069 248 EDSDCCICLSQYV--DGAELYTLPCNHHFHCGCIS 280 (303)
Q Consensus 248 ed~~C~ICL~~y~--~~~~lr~LpC~H~FH~~CI~ 280 (303)
.+..|.+|...|. .+.......|.|.++..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5678999999983 33344445599999999855
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.08 E-value=19 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=25.4
Q ss_pred CCcceeecccccCCCceEEeC-CCCccChhhHHHHH
Q 022069 249 DSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL 283 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL 283 (303)
+..|.+|-..|.--..-.-.. ||++|+..|-....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 468999999987543333344 99999999976543
No 144
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.26 E-value=12 Score=25.89 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=13.5
Q ss_pred HHHHhcCCCCcccccCcc
Q 022069 280 SKWLRINATCPLCKYNIR 297 (303)
Q Consensus 280 ~~WL~~~~tCPlCR~~I~ 297 (303)
++||..--.||.|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 456666778999999875
No 145
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.53 E-value=10 Score=26.16 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHhcCCCCcccccCcc
Q 022069 280 SKWLRINATCPLCKYNIR 297 (303)
Q Consensus 280 ~~WL~~~~tCPlCR~~I~ 297 (303)
++||..--.||.||.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456777778999999875
No 146
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.50 E-value=31 Score=24.32 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCCcceeecccccCCCceEEe-CCCCccChhhHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKW 282 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~W 282 (303)
+...|.+|-..|.--..-.-- .||++|+..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345699999998754332333 49999999997754
No 147
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.21 E-value=31 Score=24.82 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=24.9
Q ss_pred CCCcceeecccccCCCceEE-eCCCCccChhhHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKW 282 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~W 282 (303)
+...|.+|-..|.--..-.- -.||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 45679999999875433223 349999999997654
No 148
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.78 E-value=50 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCCcceeecccccCCCceEE-eCCCCccChhhHHHH
Q 022069 248 EDSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKW 282 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~W 282 (303)
+...|.+|-..|.--..-.- -.||++|+..|-..-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34579999999864432223 349999999997654
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.62 E-value=46 Score=22.39 Aligned_cols=42 Identities=17% Similarity=0.475 Sum_probs=26.4
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
...|.-|-..+.+++.+. ..-+..||.+| -+|-.|+.++..+
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCCC
Confidence 456888888876544432 22466788777 3477777766543
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=57 Score=21.59 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=11.5
Q ss_pred cceeecccccCCCceEEeCCCCccChhh
Q 022069 251 DCCICLSQYVDGAELYTLPCNHHFHCGC 278 (303)
Q Consensus 251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~C 278 (303)
.|.-|-..+..++.. ...=+..||.+|
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1x61_A 7 GCGGCGEDVVGDGAG-VVALDRVFHVGC 33 (72)
T ss_dssp CCSSSCSCCCSSSCC-EECSSSEECTTT
T ss_pred CCccCCCccCCCceE-EEECCCeEcccC
Confidence 455555544432211 122245555555
No 151
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=28.61 E-value=1.2e+02 Score=21.64 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=28.7
Q ss_pred CCCcceeecccccCCCceEEeC--CCCccChhhHHHHHhc
Q 022069 248 EDSDCCICLSQYVDGAELYTLP--CNHHFHCGCISKWLRI 285 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp--C~H~FH~~CI~~WL~~ 285 (303)
....|.+|-+.+++-. ..+.| =.|.|+-.|-+.-++.
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 4456999999988764 34666 3699999999999865
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.37 E-value=25 Score=29.91 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=25.7
Q ss_pred CCcceeecccccCCCceEEe-CCCCccChhhHHHHH
Q 022069 249 DSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWL 283 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL 283 (303)
+..|.+|-..|.--..-.-. .||++|+..|-....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 45799999998754333334 499999999977653
No 153
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.31 E-value=37 Score=22.57 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=24.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|.-|-..+.+++++ ...-+..||.+| -+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCC
Confidence 4577777776654332 333567777776 346677666654
No 154
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=27.31 E-value=28 Score=33.35 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccC
Q 022069 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYN 295 (303)
Q Consensus 248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~ 295 (303)
.+..-|+|-..+.++....... |.-.||..|+.-=-. .+-.||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3445569988886454444444 999999999954221 12369999753
No 155
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.27 E-value=27 Score=26.82 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=24.1
Q ss_pred CcceeecccccCCCceEEe-CCCCccChhhHHHH
Q 022069 250 SDCCICLSQYVDGAELYTL-PCNHHFHCGCISKW 282 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~W 282 (303)
..|.+|-..|.--..-.-- .||++|+..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4699999998754332333 49999999997654
No 156
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.85 E-value=32 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCcceeecccccCCCceEE-eCCCCccChhhHHHHH
Q 022069 249 DSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWL 283 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~WL 283 (303)
...|.+|-..|.--..-.- -.||++|+..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3569999999875433233 3499999999987654
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.69 E-value=54 Score=22.39 Aligned_cols=41 Identities=29% Similarity=0.513 Sum_probs=27.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
..|.-|-..+.+++.+ ...=+..||.+| -+|-.|+.++..+
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCCC
Confidence 4688888887765543 233467888877 3577777776543
No 158
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.53 E-value=14 Score=34.31 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCcceeecccccCCCc-eEEeCCCCccChhhHHHHHhc-------CCCCcccccCccC
Q 022069 249 DSDCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWLRI-------NATCPLCKYNIRR 298 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~~ 298 (303)
...|.+|-..|.--.. ...-.||++||..|-...... ...|-.|-..+..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHHh
Confidence 4569999998864322 233459999999999876521 2458777655543
No 159
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=26.40 E-value=25 Score=26.11 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=10.5
Q ss_pred ccChhhHHHHHh
Q 022069 273 HFHCGCISKWLR 284 (303)
Q Consensus 273 ~FH~~CI~~WL~ 284 (303)
-||..|+.+|++
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 160
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.23 E-value=22 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=16.4
Q ss_pred EEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 266 YTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 266 r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
+...|||.|-.. .....||.|.+++..
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCccee
Confidence 444577776543 223479999877643
No 161
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=26.00 E-value=26 Score=26.00 Aligned_cols=12 Identities=42% Similarity=1.093 Sum_probs=10.5
Q ss_pred ccChhhHHHHHh
Q 022069 273 HFHCGCISKWLR 284 (303)
Q Consensus 273 ~FH~~CI~~WL~ 284 (303)
-||..|+.+|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 162
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.35 E-value=52 Score=21.83 Aligned_cols=39 Identities=21% Similarity=0.545 Sum_probs=23.7
Q ss_pred CcceeecccccC--CCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 250 SDCCICLSQYVD--GAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 250 ~~C~ICL~~y~~--~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
..|.-|-..+.+ ++++ ...-+..||.+|. +|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 457777777664 2222 2335677887773 5777777664
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.17 E-value=34 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.528 Sum_probs=28.5
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~ 299 (303)
...|.-|-..+..++.+.. .=+..||.+|. +|-.|+.++..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4568889888876654422 34677888885 577787776543
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.85 E-value=55 Score=21.65 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=22.9
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|.-|-..+.+++.+ ...-+..||.+| -+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC--------CcccccCCccCC
Confidence 3577777776654332 222456677766 346666666543
No 165
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=48 Score=24.88 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=33.6
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~ 301 (303)
..|..|-..+.+........=+..|+..|-.+-+..+..|--|..+|..++.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 4577777666531111123345678888888866655689999999886544
No 166
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.34 E-value=83 Score=20.57 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=19.8
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 297 (303)
..|.-|-..+.++ . ...-+..||.+| -+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC--------CccCCCCCcCC
Confidence 3466666665532 1 233456666665 23566666553
No 167
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.17 E-value=11 Score=29.05 Aligned_cols=44 Identities=27% Similarity=0.544 Sum_probs=28.4
Q ss_pred CcceeecccccCCCceEE-eCCCCccChhhHHHHHhcCCCCcccc
Q 022069 250 SDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWLRINATCPLCK 293 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~WL~~~~tCPlCR 293 (303)
..|..|-..|.--..-.- -.||.+|+..|-.........|-.|-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 569999998865332233 44999999999776555455676663
No 168
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.96 E-value=28 Score=23.92 Aligned_cols=39 Identities=23% Similarity=0.540 Sum_probs=21.4
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|..|-..+.+++.+ ..-+..||.+|. +|-.|+.++..
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECS
T ss_pred CcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCC
Confidence 4577776666555433 224566666662 35566555543
No 169
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.79 E-value=7.7 Score=25.68 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=10.1
Q ss_pred HHHhcCCCCcccccCcc
Q 022069 281 KWLRINATCPLCKYNIR 297 (303)
Q Consensus 281 ~WL~~~~tCPlCR~~I~ 297 (303)
+|+..--.||.|+.++.
T Consensus 5 ~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 5 AGLLEILACPACHAPLE 21 (56)
T ss_dssp CSCTTSCCCSSSCSCEE
T ss_pred HHHHhheeCCCCCCcce
Confidence 34444456777777653
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.24 E-value=33 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=30.6
Q ss_pred CCCcceeecccc--cCCCceEEeCCCCccChhhHHHHHhcCC--CCccccc
Q 022069 248 EDSDCCICLSQY--VDGAELYTLPCNHHFHCGCISKWLRINA--TCPLCKY 294 (303)
Q Consensus 248 ed~~C~ICL~~y--~~~~~lr~LpC~H~FH~~CI~~WL~~~~--tCPlCR~ 294 (303)
.+..|.+|...| ..+.......|+|.++..|= .|.+.+. .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467899999986 34444555669999999997 2443222 3666643
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.05 E-value=61 Score=21.34 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=21.1
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|.-|-....+ +.+ ..-+..||.+|. +|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCC
Confidence 457777666653 222 234566777663 46666666554
No 172
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.63 E-value=42 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=17.9
Q ss_pred ceEEeCCCCccChhhHHHHHhcCC-CCcccccC
Q 022069 264 ELYTLPCNHHFHCGCISKWLRINA-TCPLCKYN 295 (303)
Q Consensus 264 ~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~ 295 (303)
..+...|||.|-.+ .... .||-|.++
T Consensus 73 ~~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 34556688888762 3356 89999776
No 173
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.59 E-value=12 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=11.9
Q ss_pred HHHhcCCCCcccccCcc
Q 022069 281 KWLRINATCPLCKYNIR 297 (303)
Q Consensus 281 ~WL~~~~tCPlCR~~I~ 297 (303)
+||..--.||.|+.++.
T Consensus 3 ~~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLE 19 (68)
T ss_dssp CSSSCCCBCSSSCCBCE
T ss_pred hHHhhheECCCCCCcCe
Confidence 34555567999998774
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.54 E-value=51 Score=24.73 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=17.5
Q ss_pred CCcceeecccccCCCceEEeCCCCccChhhHHHHH
Q 022069 249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL 283 (303)
Q Consensus 249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL 283 (303)
-..|..|-..+..++... ..=+..|+..|-.+.+
T Consensus 36 CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHh
Confidence 344666666654443322 2235566666666554
No 175
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.35 E-value=55 Score=21.28 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=25.0
Q ss_pred CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298 (303)
Q Consensus 250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 298 (303)
..|+-|-.... ++ ....-+..||.+| -+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 45777877776 32 2344577888877 357788777654
Done!