BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022070
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 152/229 (66%), Gaps = 6/229 (2%)
Query: 77 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 136
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 1 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQAT 57
Query: 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 196
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 117
Query: 197 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 256
S+ N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 118 SVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 176
Query: 257 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 303
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 177 RLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 77 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 136
+W G N N+ ++ L+ +GVI S V++ M+ DR + P PY+D+P IG T
Sbjct: 8 AWRSVGAN-NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVT 64
Query: 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIP 191
ISAPHMHA L+ L ++LKPG LD+GSG+GYLTACF + +G R VG+EH
Sbjct: 65 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA 124
Query: 192 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ 251
ELV S N+ + +L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+Q
Sbjct: 125 ELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQ 183
Query: 252 LKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 293
L GGR+++PVG Q ++ DK+ +G + + V YVPL
Sbjct: 184 LASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPH 141
+ KA++E L G I SK+V + + + R F+P+ Y VD+P+ IGY TISA H
Sbjct: 5 EQKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIH 64
Query: 142 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 201
M +LL +LKPGM L+IG+G GY A A +VG G V +E IPEL + + +
Sbjct: 65 MVGMMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL 122
Query: 202 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261
K L ++ V VGDG G+ APYD I+ AA P+IP+ LI QLK GG++++P
Sbjct: 123 RK------LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMP 176
Query: 262 VGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 298
VG Q L + +K D + I V +VPL ++
Sbjct: 177 VGRYLQRLVLAEKRGD-EIIIKDCGPVAFVPLVGKEG 212
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 13/188 (6%)
Query: 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMH 143
N +K+++E+L+ G+I V M +DR ++ + PY+D+P+ I + TISAPHMH
Sbjct: 10 NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKE--IPYIDTPVYISHGVTISAPHMH 67
Query: 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFAL----MVGPQGRAVGVEHIPELVVSSIQ 199
A L+ L LKPG A+D+GSG+GYLT C A+ + +G+E + +LV S++
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 200 NIEKSAAAPLLKEGSLSVH-----VGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 254
NI++ L + +H V + K E +DAIHVGA+A E+P+ L+D L
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEK--KELGLFDAIHVGASASELPEILVDLLAE 185
Query: 255 GGRMVIPV 262
G+++IP+
Sbjct: 186 NGKLIIPI 193
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 19/210 (9%)
Query: 90 VEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCL 147
VE L+ G+I SK+V R V D Y +D P+ I T+SAPHM A L
Sbjct: 25 VEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIML 84
Query: 148 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 207
++ NLKPGM+ L++G+G+G+ A + +V + +E IPELV + +N+E++
Sbjct: 85 EI--ANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA--- 137
Query: 208 PLLKEGSLSVHV--GDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN- 264
G +VHV GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++IPVG+
Sbjct: 138 -----GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSY 192
Query: 265 -IFQDLKVVDKNQDGSLSIWSETSVRYVPL 293
++Q+L V K +DG + I + V +VPL
Sbjct: 193 HLWQELLEVRKTKDG-IKIKNHGGVAFVPL 221
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 19/216 (8%)
Query: 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPH 141
+ +A+++ L+ G I ++V + + R FV + + + + IG TIS P+
Sbjct: 6 RRVQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPY 64
Query: 142 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 201
M A +LLE L P L+IG+G+GY TA A +V +H+ V I+ +
Sbjct: 65 MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---------QHVCS--VERIKGL 111
Query: 202 EKSAAAPL--LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 259
+ A L L ++S GDG +GW AP+DAI V AA PEIP AL+ QL GG +V
Sbjct: 112 QWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILV 171
Query: 260 IPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 295
+PVG Q LK V + + G I + +VR+VPL
Sbjct: 172 LPVGEEHQYLKRV-RRRGGEFIIDTVEAVRFVPLVK 206
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 93 LQHYGVITSKKVSEVMETIDRACFVPDGTP-PYV-DSPMAIGYN-----ATISAPHMHAT 145
L+ YGV S +++ I R F+ P YV + + + Y+ +T S P + A
Sbjct: 9 LKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMAL 66
Query: 146 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 205
++ + L GM L+IG GTGY A + +VG +G V VE+ ++ + +N+E+
Sbjct: 67 FMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG 124
Query: 206 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 262
++ GDG G PEF+PYD I V E+P+ QLK GGR+++P+
Sbjct: 125 IENVI------FVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 99 ITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQL----LEE-N 153
I +++++E +DR+ F+P+ Y A + A P ++ T L L L+E +
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDY---AYAHTHEALPILPGINTTALNLGIFXLDELD 67
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE- 212
L G L+IG+G GY TA A E + ++V I + A+ LL
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIA------------EIVDKVVSVEINEKXYNYASKLLSYY 115
Query: 213 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP--VGNIFQDLK 270
++ + +GDG G+ E PYD + V A AP + +QLK GG ++P VG + + K
Sbjct: 116 NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIGVGRVQKLYK 175
Query: 271 VVDKNQDGSLSIWSET 286
V+ K SL E
Sbjct: 176 VIKKGNSPSLENLGEV 191
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 113 RACFVPDGTPPYV-----------DSPMAIGYNATISAPHMHATCLQL--LEENLKPGMH 159
R P PP+V + P+ I H T L L L +L+PG
Sbjct: 64 RRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHAETTRLALKALARHLRPGDK 123
Query: 160 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219
LD+G+G+G L A A +G G+A+GV+ P ++ + N +++ P EGSL +
Sbjct: 124 VLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL 180
Query: 220 GDGRKGWPEFAPYDAIHV-------GAAAPEIPQALIDQLKPGGRMVI 260
F P+D + A AP +AL+ PGGR ++
Sbjct: 181 --------PFGPFDLLVANLYAELHAALAPRYREALV----PGGRALL 216
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 113 RACFVPDGTPPYV-----------DSPMAIGYNATISAPHMHATCLQL--LEENLKPGMH 159
R P PP+V + P+ I H T L L L +L+PG
Sbjct: 64 RRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDK 123
Query: 160 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219
LD+G+G+G L A A +G G+A+GV+ P ++ + N +++ P EGSL +
Sbjct: 124 VLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL 180
Query: 220 GDGRKGWPEFAPYDAIHV-------GAAAPEIPQALIDQLKPGGRMVI 260
F P+D + A AP +AL+ PGGR ++
Sbjct: 181 --------PFGPFDLLVANLYAELHAALAPRYREALV----PGGRALL 216
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 134 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 193
+AT + P + + LL +L PGM L+ G+G+G LT A VG +G E P
Sbjct: 76 SATPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHH 133
Query: 194 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQL 252
+ + +N+ + ++ H+G + E A YD + + P ++ + L
Sbjct: 134 LAQAERNVRA-----FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALAL 188
Query: 253 KPGGRMVIPVGNIFQDLKVVDKNQDGSLSI-------WSETSVR 289
KP +V + NI Q L++V + + W E VR
Sbjct: 189 KPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGWREWEVR 232
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 12/179 (6%)
Query: 122 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 181
P +D M + I P + +L ++K G +D G G+G + A A VG
Sbjct: 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSS 137
Query: 182 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241
G+ E E + N+ K +++ V D +G+ E DA+ +
Sbjct: 138 GKVFAYEKREEFAKLAESNLTKWGLIE-----RVTIKVRDISEGFDE-KDVDALFLDVPD 191
Query: 242 P-EIPQALIDQLKPGGRM--VIPVGNIFQD-LKVVDKNQDGSLSIWSETSVRYVPLTSR 296
P + LK GGR V P N Q+ LK + + + +W Y P+ R
Sbjct: 192 PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVPER 250
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 155 KPGMH--ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 212
+PG + A+D+G GTG +T A G R ++ PE + ++ N+++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEXNLQRHGLGD---- 82
Query: 213 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVI 260
++++ GD + + D VG + E+ + L D+LKPGGR+++
Sbjct: 83 -NVTLXEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 149 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203
L E LK GM LD+G+G G+ + MVG +G+ ++ E+V + + + K
Sbjct: 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 146 CLQLLEENLKP----GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 201
L+ L+E L P G LD+G+G G LT A M VGVE ++S+ ++
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDD----LASVLSL 271
Query: 202 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALID---- 250
+K A LK +L V + E A +D I HVG A ++ QA ++
Sbjct: 272 QKGLEANALKAQALHSDVDE---ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAA 328
Query: 251 QLKPGGRMVIPVGNIF 266
+L+PGG + V N F
Sbjct: 329 RLRPGGVFFL-VSNPF 343
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 146 CLQLLEENLKP----GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 201
L+ L+E L P G LD+G+G G LT A M VGVE ++S+ ++
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDD----LASVLSL 271
Query: 202 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALID---- 250
+K A LK +L V + E A +D I HVG A ++ QA ++
Sbjct: 272 QKGLEANALKAQALHSDVDE---ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAA 328
Query: 251 QLKPGGRMVIPVGNIF 266
+L+PGG + V N F
Sbjct: 329 RLRPGGVFFL-VSNPF 343
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 213
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ + +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DD 145
Query: 214 SLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMV 259
+++ + D +G E + HV P+ P+ +++ LKPGG V
Sbjct: 146 RVTIKLKDIYEGIEE---ENVDHVILDLPQ-PERVVEHAAKALKPGGFFV 191
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 213
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ + +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DD 145
Query: 214 SLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMV 259
+++ + D +G E + HV P+ P+ +++ LKPGG V
Sbjct: 146 RVTIKLKDIYEGIEE---ENVDHVILDLPQ-PERVVEHAAKALKPGGFFV 191
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 147 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 206
+Q ++ KPGM +D+G+ G + +G +GR + + +P + + ++
Sbjct: 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFR 72
Query: 207 APLLKEGSLSVHVGDGRKG--WPEFAPYDAIHVGAAAPEIPQALI----------DQLKP 254
L+ + L VGD + + AP G A +IP+A+ D L P
Sbjct: 73 DELVMKALLE-RVGDSKVQVVMSDMAPN---MSGTPAVDIPRAMYLVELALEMCRDVLAP 128
Query: 255 GGRMVIPV 262
GG V+ V
Sbjct: 129 GGSFVVKV 136
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 147 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 202
L++L+ G LD+G G+LT A GP R VG++ L+ S+ QNI
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGP-SRXVGLDIDSRLIHSARQNIR 91
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 83/224 (37%), Gaps = 42/224 (18%)
Query: 79 SGSGVNKNKAMVEHLQHYGVITS--------KKVSEVMETIDRACFVPD---GTPPYVDS 127
+G G K K + L ++G++ S K V + I R+ F P D
Sbjct: 20 TGEGETKFKKLFR-LNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDY 78
Query: 128 PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 187
+ + I+ P L +++ N PG L+ GSG+G ++ + VG QGR +
Sbjct: 79 VVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISF 136
Query: 188 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQA 247
E V ++ K LS HV + WP+ + + A +I
Sbjct: 137 E-----VRKDHHDLAKKNYKHWRDSWKLS-HVEE----WPDNVDFIHKDISGATEDIKSL 186
Query: 248 LID------------------QLKPGGRMVIPVGNIFQDLKVVD 273
D LK GG + V NI Q ++++D
Sbjct: 187 TFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLD 230
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 188
+KPG L+IG G G L+A A VG G G++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 149 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAA 207
L+E +K G L +G +G + + ++GP+GR GVE P ++ + + ++
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIF 129
Query: 208 PLLKEGSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRM 258
P+L GD R +PE D ++ A PE ++ L+ GG M
Sbjct: 130 PIL---------GDAR--FPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178
Query: 259 VIPV 262
++ +
Sbjct: 179 LMAI 182
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 146 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 205
LQLL N +PG LD+G GTG LT A +G ++ + + QN
Sbjct: 49 LLQLL--NPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAATXIEKARQNYPH-- 101
Query: 206 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQALIDQ-LKPGGRMV 259
L V D R + P DA+ A PE A I Q LK GGR V
Sbjct: 102 ---------LHFDVADARNFRVD-KPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151
Query: 260 IPVG 263
G
Sbjct: 152 AEFG 155
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 122 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 181
P VD M++ + P A + E ++ PG L+ G+G+G LT VGP
Sbjct: 67 PLLVDYVMSMPRGPQVIYPKDAAQIVH--EGDIFPGARVLEAGAGSGALTLSLLRAVGPA 124
Query: 182 GRAVGVEH 189
G+ + E
Sbjct: 125 GQVISYEQ 132
>pdb|2OUX|A Chain A, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
pdb|2OUX|B Chain B, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
Length = 286
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 171 TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-F 229
T + +V + VGV + +L+V N + + A +L E +SVHVGD ++ +
Sbjct: 172 TIYYVYVVDQENHLVGVISLRDLIV----NDDDTLIADILNERVISVHVGDDQEDVAQTI 227
Query: 230 APYDAIHV 237
YD + V
Sbjct: 228 RDYDFLAV 235
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 212
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL-- 128
Query: 213 GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 262
GD K PE D I A P + LID LK GG +I V
Sbjct: 129 -------GDATK--PEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 212
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPIL-- 128
Query: 213 GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 262
GD K PE D I A P + LID LK GG +I V
Sbjct: 129 -------GDATK--PEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAV 178
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 212
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPIL-- 135
Query: 213 GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 262
GD K PE D I A P + LID LK GG +I V
Sbjct: 136 -------GDATK--PEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAV 185
>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1-
Syntrophin
Length = 178
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 210 LKEGSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQ 251
L E +L+V DG G PE P A GAA P++P+AL+ Q
Sbjct: 34 LAEDALTVSPADGEPG-PEPEPAQLNGAAEPGAAPPQLPEALLLQ 77
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 122 PPYVDSPMAIGYN--ATISAPHMHATCL-------------QLLEENLKPGMHALDIGSG 166
P D+P + + T H HA Q L ENL+ + +D+G G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFXQHLPENLEGEI--VDLGCG 232
Query: 167 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 209
G + L PQ + V V+ P V SS N+E + L
Sbjct: 233 NGVIGLTL-LDKNPQAKVVFVDESPXAVASSRLNVETNXPEAL 274
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 210 LKEGSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQLK 253
L E +L+V DG G PE P A GAA P++P+AL+ Q +
Sbjct: 34 LAEDALTVSPADGEPG-PEPEPAQLNGAAEPGAAPPQLPEALLLQRR 79
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP---LLKE 212
P + ++ G +A A+ AV H+P V+ + +EK AAP L+
Sbjct: 3 PSLDSISHSFANGVASAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKXLAAPTDSTLEL 62
Query: 213 GSLSVHVGD----GRKGWP 227
S+++GD RKG P
Sbjct: 63 DGYSLNLGDVVSAARKGRP 81
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP---LLKE 212
P + ++ G +A A+ AV H+P V+ + +EK AAP L+
Sbjct: 3 PSLDSISHSFANGVASAKQAVNGASTNLAVAGSHLPTTQVTQVDIVEKXLAAPTDSTLEL 62
Query: 213 GSLSVHVGD----GRKGWP 227
S+++GD RKG P
Sbjct: 63 DGYSLNLGDVVSAARKGRP 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,250,179
Number of Sequences: 62578
Number of extensions: 371850
Number of successful extensions: 950
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 38
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)