Query 022070
Match_columns 303
No_of_seqs 315 out of 2660
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 4.7E-38 1E-42 271.2 22.1 199 87-297 4-205 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 5.3E-38 1.2E-42 275.0 20.1 204 86-297 2-208 (209)
3 PRK13942 protein-L-isoaspartat 100.0 7.2E-34 1.6E-38 250.3 24.9 205 84-297 4-210 (212)
4 TIGR00080 pimt protein-L-isoas 100.0 7.7E-33 1.7E-37 244.2 25.1 208 84-300 5-214 (215)
5 PRK13944 protein-L-isoaspartat 100.0 2.3E-32 5E-37 239.5 24.9 201 86-294 2-205 (205)
6 KOG1661 Protein-L-isoaspartate 100.0 1.1E-32 2.5E-37 234.7 19.6 226 77-303 2-236 (237)
7 PRK00312 pcm protein-L-isoaspa 100.0 6.1E-29 1.3E-33 218.7 24.8 202 84-298 7-211 (212)
8 PRK13943 protein-L-isoaspartat 99.9 1.7E-24 3.6E-29 201.1 23.5 205 85-300 6-220 (322)
9 COG2230 Cfa Cyclopropane fatty 99.9 1.7E-21 3.6E-26 176.1 9.9 172 109-295 18-205 (283)
10 PRK11705 cyclopropane fatty ac 99.8 3.9E-20 8.5E-25 176.3 16.0 222 41-293 32-293 (383)
11 PF02353 CMAS: Mycolic acid cy 99.8 1.2E-18 2.6E-23 158.8 12.7 163 122-294 22-198 (273)
12 COG2242 CobL Precorrin-6B meth 99.7 4E-16 8.6E-21 132.5 15.4 124 132-264 12-137 (187)
13 PF12847 Methyltransf_18: Meth 99.7 4E-16 8.6E-21 122.6 12.3 100 156-261 1-110 (112)
14 COG2264 PrmA Ribosomal protein 99.7 6.9E-16 1.5E-20 140.8 11.8 151 99-261 93-262 (300)
15 PF01209 Ubie_methyltran: ubiE 99.6 8.2E-16 1.8E-20 137.2 10.7 108 145-260 38-151 (233)
16 COG2226 UbiE Methylase involve 99.6 1.8E-15 3.9E-20 134.5 12.6 100 154-260 49-154 (238)
17 TIGR02469 CbiT precorrin-6Y C5 99.6 1.8E-14 3.9E-19 114.7 15.3 115 139-262 4-122 (124)
18 COG2519 GCD14 tRNA(1-methylade 99.6 1.2E-15 2.5E-20 135.1 8.6 139 135-281 75-214 (256)
19 PRK08287 cobalt-precorrin-6Y C 99.6 1.2E-14 2.7E-19 125.2 13.8 118 134-262 11-131 (187)
20 PF13847 Methyltransf_31: Meth 99.6 1E-14 2.2E-19 121.5 12.5 103 155-264 2-112 (152)
21 PRK00377 cbiT cobalt-precorrin 99.6 1.7E-14 3.8E-19 125.5 14.0 123 135-264 21-147 (198)
22 PF06325 PrmA: Ribosomal prote 99.6 3.2E-15 7E-20 137.3 9.3 123 124-261 133-258 (295)
23 PRK00107 gidB 16S rRNA methylt 99.6 4.3E-14 9.3E-19 122.1 15.4 104 154-265 43-148 (187)
24 TIGR00406 prmA ribosomal prote 99.6 2.2E-14 4.8E-19 132.0 14.4 127 123-262 130-259 (288)
25 PLN02244 tocopherol O-methyltr 99.6 2E-14 4.4E-19 135.2 14.5 101 155-262 117-223 (340)
26 TIGR02752 MenG_heptapren 2-hep 99.6 4.4E-14 9.6E-19 125.4 15.2 112 144-263 35-152 (231)
27 PF08704 GCD14: tRNA methyltra 99.6 8E-15 1.7E-19 131.3 10.4 153 132-291 18-175 (247)
28 PLN02233 ubiquinone biosynthes 99.6 3.4E-14 7.5E-19 129.0 14.5 106 154-262 71-182 (261)
29 PF05175 MTS: Methyltransferas 99.6 5.4E-14 1.2E-18 119.6 14.2 111 144-264 21-142 (170)
30 TIGR00138 gidB 16S rRNA methyl 99.6 3.1E-14 6.8E-19 122.4 12.2 102 156-265 42-145 (181)
31 TIGR03533 L3_gln_methyl protei 99.6 4.4E-14 9.6E-19 129.7 12.7 133 126-265 89-254 (284)
32 COG2227 UbiG 2-polyprenyl-3-me 99.5 6.7E-15 1.5E-19 129.3 6.1 132 156-297 59-225 (243)
33 PRK00517 prmA ribosomal protei 99.5 9E-14 2E-18 125.4 13.6 119 124-261 91-212 (250)
34 PRK07402 precorrin-6B methylas 99.5 2.6E-13 5.6E-18 117.9 14.4 123 134-265 20-145 (196)
35 PRK11873 arsM arsenite S-adeno 99.5 1.7E-13 3.8E-18 124.8 13.3 102 154-261 75-182 (272)
36 PRK14103 trans-aconitate 2-met 99.5 9.4E-14 2E-18 125.5 11.4 104 144-264 19-128 (255)
37 PF08241 Methyltransf_11: Meth 99.5 6.9E-14 1.5E-18 105.8 8.6 89 161-260 1-95 (95)
38 PRK15451 tRNA cmo(5)U34 methyl 99.5 2.7E-13 5.9E-18 122.1 13.9 102 153-261 53-163 (247)
39 PRK11207 tellurite resistance 99.5 2.1E-13 4.6E-18 118.7 12.6 104 145-260 21-132 (197)
40 PLN02396 hexaprenyldihydroxybe 99.5 9.4E-14 2E-18 129.4 10.6 103 155-265 130-238 (322)
41 PRK04266 fibrillarin; Provisio 99.5 4.3E-13 9.4E-18 119.2 14.3 113 142-263 57-177 (226)
42 PLN02781 Probable caffeoyl-CoA 99.5 1.6E-13 3.5E-18 122.6 11.4 111 144-260 57-176 (234)
43 PRK11805 N5-glutamine S-adenos 99.5 4.7E-13 1E-17 124.2 14.7 132 127-265 102-266 (307)
44 PRK01683 trans-aconitate 2-met 99.5 2.6E-13 5.6E-18 122.6 12.7 106 144-264 21-132 (258)
45 PTZ00098 phosphoethanolamine N 99.5 2.7E-13 6E-18 123.2 12.5 108 143-262 41-156 (263)
46 PRK11036 putative S-adenosyl-L 99.5 2.6E-13 5.5E-18 122.7 12.2 102 155-264 43-151 (255)
47 COG4122 Predicted O-methyltran 99.5 3.1E-13 6.7E-18 118.6 11.8 111 144-260 48-164 (219)
48 TIGR00446 nop2p NOL1/NOP2/sun 99.5 6.1E-13 1.3E-17 121.0 14.0 105 153-263 68-200 (264)
49 TIGR00477 tehB tellurite resis 99.5 4.8E-13 1E-17 116.3 12.4 104 144-260 20-131 (195)
50 PLN02476 O-methyltransferase 99.5 3.6E-13 7.7E-18 122.6 11.6 115 144-266 107-230 (278)
51 PF13659 Methyltransf_26: Meth 99.5 1.2E-13 2.7E-18 109.3 7.4 100 157-263 1-116 (117)
52 TIGR00537 hemK_rel_arch HemK-r 99.5 4.7E-13 1E-17 114.6 11.4 99 154-264 17-142 (179)
53 PRK13168 rumA 23S rRNA m(5)U19 99.5 4.5E-13 9.7E-18 130.4 12.5 141 144-299 287-436 (443)
54 TIGR00536 hemK_fam HemK family 99.5 1.5E-12 3.3E-17 119.6 14.5 133 126-265 82-247 (284)
55 PRK14967 putative methyltransf 99.4 1.9E-12 4.1E-17 114.8 14.5 101 154-264 34-161 (223)
56 PF05401 NodS: Nodulation prot 99.4 3.3E-13 7.1E-18 115.7 9.2 97 155-263 42-147 (201)
57 PRK00121 trmB tRNA (guanine-N( 99.4 6.1E-13 1.3E-17 116.3 10.9 104 155-265 39-159 (202)
58 PRK14966 unknown domain/N5-glu 99.4 2.2E-12 4.9E-17 122.9 15.4 134 123-265 219-384 (423)
59 TIGR00740 methyltransferase, p 99.4 2.4E-12 5.2E-17 115.2 14.8 102 154-262 51-161 (239)
60 PRK15001 SAM-dependent 23S rib 99.4 1.6E-12 3.6E-17 123.3 14.3 114 144-264 218-342 (378)
61 TIGR03534 RF_mod_PrmC protein- 99.4 2.4E-12 5.1E-17 115.4 14.5 102 155-264 86-219 (251)
62 PRK14903 16S rRNA methyltransf 99.4 1.1E-12 2.3E-17 127.2 13.2 106 153-264 234-368 (431)
63 COG4106 Tam Trans-aconitate me 99.4 2.4E-13 5.2E-18 117.3 7.4 99 154-265 28-132 (257)
64 smart00828 PKS_MT Methyltransf 99.4 7.8E-13 1.7E-17 116.9 11.0 98 158-262 1-104 (224)
65 PF01596 Methyltransf_3: O-met 99.4 3.1E-13 6.8E-18 118.2 8.2 111 144-260 34-153 (205)
66 PLN02336 phosphoethanolamine N 99.4 1.4E-12 3E-17 128.0 13.5 108 144-262 256-369 (475)
67 PRK14901 16S rRNA methyltransf 99.4 1.5E-12 3.2E-17 126.4 13.5 103 154-262 250-384 (434)
68 PRK14904 16S rRNA methyltransf 99.4 1.9E-12 4.1E-17 126.1 13.9 103 154-263 248-378 (445)
69 PRK01544 bifunctional N5-gluta 99.4 2.3E-12 5E-17 127.2 14.4 137 122-265 79-272 (506)
70 PRK08317 hypothetical protein; 99.4 3.5E-12 7.6E-17 112.7 14.0 110 145-263 10-125 (241)
71 PRK03522 rumB 23S rRNA methylu 99.4 1.7E-12 3.8E-17 120.9 12.4 130 156-299 173-308 (315)
72 PRK10258 biotin biosynthesis p 99.4 2E-12 4.3E-17 116.4 12.4 105 144-264 32-142 (251)
73 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.8E-12 3.8E-17 112.6 10.8 103 156-265 16-135 (194)
74 PLN03075 nicotianamine synthas 99.4 5E-12 1.1E-16 115.8 14.0 105 155-264 122-235 (296)
75 COG2813 RsmC 16S RNA G1207 met 99.4 4.1E-12 8.9E-17 115.6 13.3 110 144-264 148-268 (300)
76 PF13649 Methyltransf_25: Meth 99.4 5.4E-13 1.2E-17 103.4 6.6 90 160-256 1-101 (101)
77 COG4123 Predicted O-methyltran 99.4 1.7E-12 3.7E-17 115.7 10.5 114 144-264 33-172 (248)
78 PRK09489 rsmC 16S ribosomal RN 99.4 5.3E-12 1.2E-16 118.8 14.2 109 144-264 186-305 (342)
79 PRK14902 16S rRNA methyltransf 99.4 4.1E-12 8.9E-17 123.7 13.4 103 154-262 248-379 (444)
80 COG2890 HemK Methylase of poly 99.4 5.7E-12 1.2E-16 115.5 13.5 129 126-264 80-240 (280)
81 PLN02589 caffeoyl-CoA O-methyl 99.4 2.4E-12 5.2E-17 115.6 10.8 116 144-267 68-193 (247)
82 PRK12335 tellurite resistance 99.4 5.8E-12 1.3E-16 115.9 13.3 94 157-261 121-222 (287)
83 PF03848 TehB: Tellurite resis 99.4 4.4E-12 9.6E-17 109.4 11.6 104 144-260 20-131 (192)
84 PRK11088 rrmA 23S rRNA methylt 99.4 7E-12 1.5E-16 114.4 13.6 99 155-265 84-184 (272)
85 PRK09328 N5-glutamine S-adenos 99.4 9.6E-12 2.1E-16 113.2 14.4 130 127-264 78-240 (275)
86 TIGR01177 conserved hypothetic 99.4 8.3E-12 1.8E-16 117.0 14.3 115 140-265 168-297 (329)
87 PTZ00146 fibrillarin; Provisio 99.4 7.1E-12 1.5E-16 114.4 13.3 103 153-263 129-238 (293)
88 KOG1270 Methyltransferases [Co 99.4 6.9E-13 1.5E-17 117.6 6.4 105 154-264 87-197 (282)
89 PRK15068 tRNA mo(5)U34 methylt 99.4 6.3E-12 1.4E-16 117.5 13.2 99 155-261 121-225 (322)
90 PRK00216 ubiE ubiquinone/menaq 99.4 1.3E-11 2.7E-16 109.5 14.3 111 144-261 41-157 (239)
91 TIGR02072 BioC biotin biosynth 99.4 8.8E-12 1.9E-16 110.3 12.8 110 143-263 20-136 (240)
92 PRK10901 16S rRNA methyltransf 99.4 1.1E-11 2.3E-16 120.2 14.0 102 154-263 242-373 (427)
93 TIGR00563 rsmB ribosomal RNA s 99.4 9E-12 2E-16 120.7 13.4 111 145-263 229-369 (426)
94 TIGR03704 PrmC_rel_meth putati 99.4 2.1E-11 4.5E-16 110.2 14.8 130 126-265 54-219 (251)
95 TIGR00452 methyltransferase, p 99.3 1.2E-11 2.5E-16 114.9 13.0 101 154-262 119-225 (314)
96 PRK14968 putative methyltransf 99.3 3.4E-11 7.4E-16 103.0 14.4 111 144-264 13-150 (188)
97 TIGR00479 rumA 23S rRNA (uraci 99.3 3.1E-12 6.7E-17 124.1 8.9 132 154-298 290-431 (431)
98 KOG1540 Ubiquinone biosynthesi 99.3 1.6E-11 3.6E-16 108.4 12.5 111 145-260 91-212 (296)
99 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.2E-16 115.3 12.8 97 155-261 112-214 (340)
100 TIGR02085 meth_trns_rumB 23S r 99.3 6.9E-12 1.5E-16 119.6 10.6 130 155-299 232-368 (374)
101 PF08242 Methyltransf_12: Meth 99.3 4.8E-13 1E-17 103.1 2.0 91 161-258 1-99 (99)
102 PRK04457 spermidine synthase; 99.3 1.6E-11 3.4E-16 111.6 11.9 103 155-263 65-178 (262)
103 PRK14121 tRNA (guanine-N(7)-)- 99.3 3.7E-11 8E-16 113.9 13.3 111 145-264 113-237 (390)
104 PRK11188 rrmJ 23S rRNA methylt 99.3 2.1E-11 4.6E-16 107.1 10.3 94 154-264 49-167 (209)
105 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5.9E-11 1.3E-15 104.0 13.1 107 145-261 30-142 (223)
106 TIGR02716 C20_methyl_CrtF C-20 99.3 7E-11 1.5E-15 109.6 13.9 107 144-261 139-253 (306)
107 PRK06922 hypothetical protein; 99.3 4.4E-11 9.6E-16 119.1 13.1 101 154-262 416-537 (677)
108 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.3E-10 2.8E-15 101.3 14.0 116 141-265 39-162 (199)
109 PF13489 Methyltransf_23: Meth 99.3 3E-11 6.6E-16 100.3 9.3 101 146-265 12-118 (161)
110 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.6E-10 3.4E-15 101.9 13.9 100 155-260 33-150 (213)
111 smart00138 MeTrc Methyltransfe 99.2 7.5E-11 1.6E-15 107.3 11.6 110 155-265 98-245 (264)
112 TIGR02021 BchM-ChlM magnesium 99.2 1.5E-10 3.3E-15 102.1 13.2 106 144-260 43-156 (219)
113 TIGR03587 Pse_Me-ase pseudamin 99.2 1.2E-10 2.6E-15 102.0 12.4 79 153-244 40-118 (204)
114 smart00650 rADc Ribosomal RNA 99.2 1.2E-10 2.6E-15 98.8 12.0 107 144-263 3-114 (169)
115 KOG2904 Predicted methyltransf 99.2 2.9E-10 6.4E-15 101.4 14.5 136 122-263 110-286 (328)
116 TIGR03438 probable methyltrans 99.2 1.9E-10 4.1E-15 106.6 13.8 111 148-263 55-178 (301)
117 PRK05785 hypothetical protein; 99.2 2.3E-10 5.1E-15 101.7 13.4 94 146-255 41-140 (226)
118 PRK05031 tRNA (uracil-5-)-meth 99.2 4E-11 8.7E-16 113.8 8.7 130 157-299 207-355 (362)
119 TIGR00438 rrmJ cell division p 99.2 2E-10 4.3E-15 99.1 12.3 94 153-263 29-147 (188)
120 TIGR02143 trmA_only tRNA (urac 99.2 4.5E-11 9.7E-16 113.1 8.7 129 158-299 199-346 (353)
121 PF07021 MetW: Methionine bios 99.2 6.2E-11 1.3E-15 101.5 8.7 98 153-265 10-112 (193)
122 PRK11933 yebU rRNA (cytosine-C 99.2 1.9E-10 4.2E-15 112.1 13.2 104 153-262 110-242 (470)
123 PLN02672 methionine S-methyltr 99.2 4.3E-10 9.2E-15 118.3 15.6 140 124-265 84-281 (1082)
124 PRK00811 spermidine synthase; 99.2 1.4E-10 3E-15 106.6 10.4 108 155-264 75-193 (283)
125 PLN02336 phosphoethanolamine N 99.2 1.7E-10 3.7E-15 113.2 11.6 105 144-261 27-141 (475)
126 PHA03412 putative methyltransf 99.2 3.7E-10 8E-15 100.1 12.2 115 132-263 29-163 (241)
127 KOG1541 Predicted protein carb 99.2 2.1E-10 4.5E-15 99.5 10.3 126 122-263 13-161 (270)
128 PLN02366 spermidine synthase 99.2 3.4E-10 7.4E-15 105.0 12.1 106 155-263 90-207 (308)
129 PRK05134 bifunctional 3-demeth 99.2 4.8E-10 1E-14 99.7 12.6 100 154-263 46-152 (233)
130 PRK07580 Mg-protoporphyrin IX 99.1 9.2E-10 2E-14 97.4 13.6 89 144-243 50-139 (230)
131 PRK15128 23S rRNA m(5)C1962 me 99.1 2.1E-10 4.6E-15 109.9 9.9 102 155-262 219-339 (396)
132 cd02440 AdoMet_MTases S-adenos 99.1 8.4E-10 1.8E-14 83.1 10.7 95 159-261 1-103 (107)
133 PRK06202 hypothetical protein; 99.1 7.5E-10 1.6E-14 98.6 12.0 96 155-260 59-165 (232)
134 TIGR01983 UbiG ubiquinone bios 99.1 1.3E-09 2.8E-14 96.1 13.3 99 156-263 45-150 (224)
135 PF08003 Methyltransf_9: Prote 99.1 8.9E-10 1.9E-14 100.4 12.3 130 155-297 114-251 (315)
136 PRK13255 thiopurine S-methyltr 99.1 8.4E-10 1.8E-14 97.6 11.8 101 154-260 35-153 (218)
137 TIGR00417 speE spermidine synt 99.1 7.8E-10 1.7E-14 100.9 11.9 105 156-263 72-187 (270)
138 TIGR02081 metW methionine bios 99.1 4.4E-10 9.6E-15 97.4 9.5 96 154-264 11-111 (194)
139 KOG1663 O-methyltransferase [S 99.1 6.5E-10 1.4E-14 97.2 10.4 111 144-260 62-181 (237)
140 PRK11783 rlmL 23S rRNA m(2)G24 99.1 4.5E-10 9.8E-15 115.1 10.1 104 155-264 537-658 (702)
141 KOG1271 Methyltransferases [Ge 99.1 7.7E-10 1.7E-14 93.3 9.5 102 157-264 68-183 (227)
142 COG2265 TrmA SAM-dependent met 99.1 6.4E-10 1.4E-14 107.5 10.3 143 141-298 280-431 (432)
143 PHA03411 putative methyltransf 99.1 2.3E-09 5E-14 97.1 12.5 92 133-241 45-136 (279)
144 PLN02585 magnesium protoporphy 99.0 2.1E-09 4.5E-14 100.1 12.4 97 142-245 129-226 (315)
145 PTZ00338 dimethyladenosine tra 99.0 1.6E-09 3.4E-14 100.0 11.3 98 132-241 13-111 (294)
146 COG0144 Sun tRNA and rRNA cyto 99.0 3.4E-09 7.3E-14 100.4 13.8 113 144-262 144-288 (355)
147 COG2263 Predicted RNA methylas 99.0 4E-09 8.6E-14 89.8 12.4 91 139-241 27-118 (198)
148 KOG4300 Predicted methyltransf 99.0 5E-10 1.1E-14 96.2 6.9 95 159-261 79-181 (252)
149 PRK00274 ksgA 16S ribosomal RN 99.0 2.2E-09 4.7E-14 98.1 10.7 92 137-242 25-116 (272)
150 PRK01581 speE spermidine synth 99.0 2.3E-09 4.9E-14 100.7 10.5 106 156-263 150-269 (374)
151 KOG2915 tRNA(1-methyladenosine 99.0 1.2E-09 2.6E-14 97.5 8.1 121 133-260 84-208 (314)
152 PRK14896 ksgA 16S ribosomal RN 99.0 5.4E-09 1.2E-13 94.8 12.0 94 134-242 8-102 (258)
153 COG1092 Predicted SAM-dependen 99.0 1.8E-09 3.9E-14 102.7 8.8 102 157-264 218-338 (393)
154 PF02475 Met_10: Met-10+ like- 98.9 4.7E-09 1E-13 91.5 9.8 100 153-259 98-199 (200)
155 PRK03612 spermidine synthase; 98.9 3.3E-09 7.1E-14 105.3 9.9 107 155-263 296-416 (521)
156 TIGR00755 ksgA dimethyladenosi 98.9 1E-08 2.2E-13 92.6 12.1 106 136-256 11-120 (253)
157 PRK13256 thiopurine S-methyltr 98.9 1.9E-08 4.1E-13 89.2 13.2 106 154-262 41-163 (226)
158 PF02390 Methyltransf_4: Putat 98.9 1.1E-08 2.3E-13 89.1 11.0 101 157-264 18-135 (195)
159 TIGR00095 RNA methyltransferas 98.9 2.6E-08 5.6E-13 86.2 13.4 103 155-264 48-161 (189)
160 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 5.9E-09 1.3E-13 95.8 9.8 113 144-262 73-219 (283)
161 KOG1499 Protein arginine N-met 98.9 5.2E-09 1.1E-13 96.8 9.2 98 154-259 58-164 (346)
162 KOG2899 Predicted methyltransf 98.9 7.1E-09 1.5E-13 91.2 9.4 111 147-260 49-207 (288)
163 COG1041 Predicted DNA modifica 98.9 1.8E-08 3.9E-13 93.6 12.5 113 140-263 183-311 (347)
164 COG4976 Predicted methyltransf 98.9 6.6E-10 1.4E-14 96.9 2.4 112 138-265 109-228 (287)
165 PF01170 UPF0020: Putative RNA 98.9 2.2E-08 4.7E-13 86.0 11.6 115 139-261 13-150 (179)
166 PF05958 tRNA_U5-meth_tr: tRNA 98.9 8.8E-10 1.9E-14 104.3 3.1 129 154-299 195-345 (352)
167 PF05724 TPMT: Thiopurine S-me 98.9 1.1E-08 2.3E-13 90.6 9.2 103 154-259 35-152 (218)
168 PRK04338 N(2),N(2)-dimethylgua 98.8 3E-08 6.5E-13 94.7 12.3 125 156-295 57-183 (382)
169 KOG3191 Predicted N6-DNA-methy 98.8 5.5E-08 1.2E-12 82.2 12.0 98 157-262 44-168 (209)
170 PRK11727 23S rRNA mA1618 methy 98.8 2.4E-08 5.1E-13 93.0 10.9 81 156-242 114-200 (321)
171 COG0220 Predicted S-adenosylme 98.8 3E-08 6.5E-13 88.0 11.0 100 158-264 50-166 (227)
172 PLN02823 spermine synthase 98.8 4E-08 8.6E-13 92.2 11.8 105 156-263 103-221 (336)
173 PF10672 Methyltrans_SAM: S-ad 98.8 1.9E-08 4.2E-13 92.1 8.9 104 155-264 122-240 (286)
174 KOG3420 Predicted RNA methylas 98.8 2E-08 4.3E-13 81.9 7.3 103 130-241 20-124 (185)
175 PF06080 DUF938: Protein of un 98.8 4.5E-08 9.7E-13 85.0 9.9 109 146-260 14-139 (204)
176 PF05185 PRMT5: PRMT5 arginine 98.8 5.2E-08 1.1E-12 94.8 11.0 97 157-259 187-294 (448)
177 COG2521 Predicted archaeal met 98.8 1E-08 2.2E-13 89.8 5.3 108 154-267 132-250 (287)
178 KOG3010 Methyltransferase [Gen 98.7 1.3E-08 2.8E-13 89.6 5.7 98 155-260 31-135 (261)
179 PF03291 Pox_MCEL: mRNA cappin 98.7 9.1E-08 2E-12 89.7 11.3 107 156-266 62-190 (331)
180 PF10294 Methyltransf_16: Puta 98.7 1.2E-07 2.6E-12 80.9 10.9 107 153-264 42-158 (173)
181 KOG0820 Ribosomal RNA adenine 98.7 1E-07 2.2E-12 85.3 10.4 99 131-241 34-133 (315)
182 COG2520 Predicted methyltransf 98.7 8.1E-08 1.8E-12 89.7 10.3 100 154-260 186-287 (341)
183 PF03602 Cons_hypoth95: Conser 98.7 3.7E-08 8E-13 84.8 7.3 122 137-265 23-156 (183)
184 KOG1500 Protein arginine N-met 98.7 8.3E-08 1.8E-12 88.1 9.4 131 156-297 177-323 (517)
185 KOG1975 mRNA cap methyltransfe 98.7 3.8E-08 8.2E-13 89.9 6.9 119 144-266 107-241 (389)
186 COG0421 SpeE Spermidine syntha 98.7 1.1E-07 2.3E-12 87.2 9.9 108 153-264 74-192 (282)
187 COG0030 KsgA Dimethyladenosine 98.7 1.4E-07 3E-12 85.0 10.5 91 138-241 14-105 (259)
188 PRK04148 hypothetical protein; 98.7 2.3E-07 5E-12 75.5 10.3 94 155-264 15-112 (134)
189 KOG1122 tRNA and rRNA cytosine 98.6 2E-07 4.3E-12 88.0 10.8 104 153-262 238-371 (460)
190 PF01269 Fibrillarin: Fibrilla 98.6 3.4E-07 7.4E-12 80.2 11.6 112 144-263 60-179 (229)
191 COG3963 Phospholipid N-methylt 98.6 2.1E-07 4.6E-12 77.7 9.7 123 124-260 19-154 (194)
192 TIGR00478 tly hemolysin TlyA f 98.6 1.4E-07 3.1E-12 83.9 8.7 100 155-265 74-174 (228)
193 PF00891 Methyltransf_2: O-met 98.6 3.2E-07 6.9E-12 82.1 11.0 90 154-260 98-197 (241)
194 PRK00050 16S rRNA m(4)C1402 me 98.6 9.4E-08 2E-12 88.0 7.3 91 140-240 5-99 (296)
195 PF02384 N6_Mtase: N-6 DNA Met 98.6 2.9E-07 6.3E-12 85.4 10.2 125 134-264 26-185 (311)
196 COG0742 N6-adenine-specific me 98.6 6E-06 1.3E-10 70.8 16.9 121 137-264 24-156 (187)
197 PF01564 Spermine_synth: Sperm 98.6 2.4E-07 5.3E-12 83.4 8.7 106 155-263 75-192 (246)
198 PF09445 Methyltransf_15: RNA 98.6 7.4E-08 1.6E-12 81.1 5.0 75 158-240 1-78 (163)
199 PRK00536 speE spermidine synth 98.5 6.4E-07 1.4E-11 81.2 10.6 101 156-264 72-173 (262)
200 PF02527 GidB: rRNA small subu 98.5 1.9E-06 4E-11 74.3 12.4 114 144-265 33-151 (184)
201 PF05219 DREV: DREV methyltran 98.5 7.7E-07 1.7E-11 79.7 9.5 90 156-263 94-189 (265)
202 PRK10611 chemotaxis methyltran 98.5 5.2E-06 1.1E-10 76.3 14.9 107 158-265 117-265 (287)
203 TIGR02987 met_A_Alw26 type II 98.5 2.2E-06 4.8E-11 85.3 13.5 103 133-241 3-122 (524)
204 PRK01544 bifunctional N5-gluta 98.4 1.9E-06 4.2E-11 85.3 11.5 103 155-264 346-464 (506)
205 PF05891 Methyltransf_PK: AdoM 98.4 5.8E-07 1.3E-11 78.6 6.7 117 157-282 56-180 (218)
206 TIGR00308 TRM1 tRNA(guanine-26 98.4 1.8E-06 4E-11 82.2 9.7 99 158-262 46-147 (374)
207 PF01739 CheR: CheR methyltran 98.4 1.7E-06 3.7E-11 75.3 8.6 108 157-265 32-178 (196)
208 PLN02232 ubiquinone biosynthes 98.4 1.2E-06 2.6E-11 73.7 7.2 74 185-261 1-80 (160)
209 KOG2187 tRNA uracil-5-methyltr 98.3 1.8E-06 3.8E-11 83.6 8.9 136 154-298 381-533 (534)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.3 6.1E-06 1.3E-10 85.0 13.4 121 139-265 174-350 (702)
211 KOG2361 Predicted methyltransf 98.3 8E-07 1.7E-11 78.4 5.4 94 159-260 74-181 (264)
212 COG0293 FtsJ 23S rRNA methylas 98.3 3.6E-06 7.7E-11 73.2 9.3 93 153-262 42-159 (205)
213 PF03059 NAS: Nicotianamine sy 98.3 9.2E-06 2E-10 74.0 11.6 103 158-265 122-233 (276)
214 COG1352 CheR Methylase of chem 98.3 1.9E-05 4.1E-10 71.9 13.4 107 157-264 97-243 (268)
215 PF13578 Methyltransf_24: Meth 98.3 1.7E-07 3.7E-12 73.0 -0.1 94 161-260 1-103 (106)
216 PF04816 DUF633: Family of unk 98.3 4.6E-06 9.9E-11 73.1 8.8 95 160-260 1-99 (205)
217 PF08123 DOT1: Histone methyla 98.2 9.8E-06 2.1E-10 71.0 10.6 118 140-260 28-156 (205)
218 COG1889 NOP1 Fibrillarin-like 98.2 1.2E-05 2.7E-10 69.2 10.6 112 143-263 62-181 (231)
219 PF00398 RrnaAD: Ribosomal RNA 98.2 5.3E-06 1.1E-10 75.4 8.4 93 136-241 12-107 (262)
220 COG4076 Predicted RNA methylas 98.2 4.5E-06 9.7E-11 71.1 6.5 91 158-259 34-132 (252)
221 COG0357 GidB Predicted S-adeno 98.2 1.5E-05 3.2E-10 70.2 9.9 98 157-262 68-168 (215)
222 PF01728 FtsJ: FtsJ-like methy 98.2 1.4E-06 3E-11 74.5 3.4 91 156-263 23-140 (181)
223 COG0116 Predicted N6-adenine-s 98.1 7.5E-05 1.6E-09 70.6 14.1 119 139-264 176-346 (381)
224 COG2384 Predicted SAM-dependen 98.1 2.4E-05 5.2E-10 68.4 9.3 102 153-260 13-118 (226)
225 TIGR03439 methyl_EasF probable 98.1 7.7E-05 1.7E-09 69.6 13.3 108 150-263 70-198 (319)
226 PF12147 Methyltransf_20: Puta 98.1 0.00014 2.9E-09 66.4 14.2 101 157-262 136-249 (311)
227 PRK10742 putative methyltransf 98.0 2.3E-05 4.9E-10 70.2 8.4 94 145-243 77-176 (250)
228 KOG1596 Fibrillarin and relate 98.0 1.8E-05 3.9E-10 69.9 7.5 101 152-264 152-263 (317)
229 PF13679 Methyltransf_32: Meth 98.0 5.4E-05 1.2E-09 62.3 10.1 102 155-263 24-132 (141)
230 KOG2198 tRNA cytosine-5-methyl 97.9 5.4E-05 1.2E-09 70.9 9.7 113 144-262 143-296 (375)
231 PRK11760 putative 23S rRNA C24 97.9 3.3E-05 7.2E-10 72.1 8.2 86 154-255 209-296 (357)
232 TIGR00006 S-adenosyl-methyltra 97.9 4.3E-05 9.4E-10 70.7 8.0 91 140-240 6-101 (305)
233 TIGR01444 fkbM_fam methyltrans 97.9 5.1E-05 1.1E-09 61.9 7.6 59 159-224 1-59 (143)
234 COG4262 Predicted spermidine s 97.9 7.3E-05 1.6E-09 69.8 9.1 111 154-265 287-410 (508)
235 PF05148 Methyltransf_8: Hypot 97.9 3.5E-05 7.5E-10 67.1 6.5 94 143-262 60-158 (219)
236 COG0500 SmtA SAM-dependent met 97.8 0.00034 7.3E-09 55.0 11.7 99 160-265 52-158 (257)
237 PF05971 Methyltransf_10: Prot 97.8 0.00018 4E-09 66.2 10.9 82 157-245 103-191 (299)
238 KOG4589 Cell division protein 97.8 5.8E-05 1.3E-09 64.4 6.6 96 154-266 67-188 (232)
239 COG1063 Tdh Threonine dehydrog 97.8 0.00036 7.8E-09 66.1 12.1 97 154-260 166-267 (350)
240 COG1189 Predicted rRNA methyla 97.7 7.2E-05 1.6E-09 66.2 6.5 98 155-265 78-181 (245)
241 COG1064 AdhP Zn-dependent alco 97.7 0.00021 4.6E-09 66.9 10.0 91 153-260 163-257 (339)
242 KOG0024 Sorbitol dehydrogenase 97.7 0.00021 4.6E-09 65.9 9.5 97 153-260 166-271 (354)
243 COG3897 Predicted methyltransf 97.7 6.8E-05 1.5E-09 64.4 5.9 93 155-260 78-176 (218)
244 COG0275 Predicted S-adenosylme 97.7 0.00032 7E-09 64.2 10.6 90 140-238 9-103 (314)
245 KOG2940 Predicted methyltransf 97.7 8.5E-05 1.9E-09 65.3 6.0 98 155-262 71-174 (325)
246 PF03141 Methyltransf_29: Puta 97.7 0.00011 2.5E-09 71.3 7.1 93 159-265 120-222 (506)
247 KOG1709 Guanidinoacetate methy 97.6 0.00057 1.2E-08 59.7 10.0 97 155-261 100-205 (271)
248 KOG1269 SAM-dependent methyltr 97.6 0.00018 4E-09 68.2 7.5 106 149-261 103-214 (364)
249 PF01861 DUF43: Protein of unk 97.6 0.0034 7.3E-08 56.0 14.8 115 142-265 30-152 (243)
250 KOG3045 Predicted RNA methylas 97.6 0.0003 6.6E-09 62.9 7.9 91 144-262 169-264 (325)
251 COG0286 HsdM Type I restrictio 97.5 0.0018 3.9E-08 64.1 13.0 125 134-265 166-329 (489)
252 COG4798 Predicted methyltransf 97.4 0.00034 7.3E-09 60.2 5.6 102 154-261 46-165 (238)
253 PRK09880 L-idonate 5-dehydroge 97.4 0.0008 1.7E-08 63.1 8.8 96 154-260 167-264 (343)
254 KOG2730 Methylase [General fun 97.4 7.9E-05 1.7E-09 65.1 1.7 77 156-240 94-174 (263)
255 PF04445 SAM_MT: Putative SAM- 97.3 0.00063 1.4E-08 60.5 6.8 87 154-243 71-163 (234)
256 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00095 2.1E-08 60.4 7.6 105 154-262 54-199 (256)
257 PF09243 Rsm22: Mitochondrial 97.2 0.0014 2.9E-08 60.1 8.4 47 157-203 34-80 (274)
258 PRK09424 pntA NAD(P) transhydr 97.2 0.0031 6.7E-08 62.5 11.1 94 155-260 163-283 (509)
259 cd08230 glucose_DH Glucose deh 97.2 0.0023 4.9E-08 60.3 9.4 94 154-260 170-267 (355)
260 PF07942 N2227: N2227-like pro 97.2 0.0049 1.1E-07 56.2 11.0 118 143-264 37-203 (270)
261 TIGR02822 adh_fam_2 zinc-bindi 97.1 0.0074 1.6E-07 56.4 11.9 90 153-260 162-252 (329)
262 KOG1331 Predicted methyltransf 97.1 0.00067 1.5E-08 61.6 4.5 98 155-269 44-150 (293)
263 KOG2671 Putative RNA methylase 97.0 0.0018 3.8E-08 60.3 7.0 105 153-264 205-356 (421)
264 PF07091 FmrO: Ribosomal RNA m 97.0 0.0035 7.6E-08 56.2 8.5 112 144-265 93-211 (251)
265 PF04989 CmcI: Cephalosporin h 97.0 0.0056 1.2E-07 53.5 9.5 113 139-260 17-145 (206)
266 cd08237 ribitol-5-phosphate_DH 97.0 0.0053 1.2E-07 57.6 9.8 89 154-260 161-254 (341)
267 cd00401 AdoHcyase S-adenosyl-L 96.9 0.0047 1E-07 59.7 9.1 87 154-260 199-287 (413)
268 KOG1562 Spermidine synthase [A 96.9 0.0019 4.2E-08 58.9 6.0 104 156-262 121-236 (337)
269 KOG3987 Uncharacterized conser 96.9 0.00025 5.4E-09 61.5 0.1 89 156-262 112-207 (288)
270 PF06962 rRNA_methylase: Putat 96.9 0.003 6.5E-08 51.8 6.4 75 183-263 1-93 (140)
271 KOG3178 Hydroxyindole-O-methyl 96.9 0.0041 8.8E-08 58.1 8.0 89 158-262 179-275 (342)
272 cd08254 hydroxyacyl_CoA_DH 6-h 96.9 0.016 3.5E-07 53.4 12.0 97 153-261 162-262 (338)
273 PHA01634 hypothetical protein 96.8 0.0073 1.6E-07 48.6 8.0 76 156-243 28-105 (156)
274 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0048 1E-07 59.0 8.3 103 156-262 49-154 (377)
275 KOG3115 Methyltransferase-like 96.8 0.0062 1.3E-07 52.9 7.8 105 158-263 62-184 (249)
276 cd08281 liver_ADH_like1 Zinc-d 96.8 0.016 3.4E-07 55.0 11.3 96 153-260 188-288 (371)
277 TIGR03366 HpnZ_proposed putati 96.7 0.0077 1.7E-07 54.8 8.8 95 154-260 118-216 (280)
278 KOG1501 Arginine N-methyltrans 96.7 0.006 1.3E-07 58.5 7.6 57 159-222 69-125 (636)
279 PF01795 Methyltransf_5: MraW 96.7 0.0026 5.6E-08 59.0 5.0 91 140-240 6-102 (310)
280 TIGR03451 mycoS_dep_FDH mycoth 96.6 0.017 3.7E-07 54.4 10.6 97 153-260 173-274 (358)
281 cd08239 THR_DH_like L-threonin 96.6 0.022 4.8E-07 53.0 10.9 95 153-260 160-260 (339)
282 PF04672 Methyltransf_19: S-ad 96.6 0.041 8.8E-07 50.0 12.0 114 144-265 57-193 (267)
283 TIGR01202 bchC 2-desacetyl-2-h 96.6 0.016 3.5E-07 53.6 9.8 86 155-260 143-229 (308)
284 cd08283 FDH_like_1 Glutathione 96.5 0.032 6.9E-07 53.3 11.7 99 153-261 181-305 (386)
285 PF11599 AviRa: RRNA methyltra 96.4 0.0053 1.1E-07 53.7 5.1 104 157-260 52-212 (246)
286 PLN02740 Alcohol dehydrogenase 96.3 0.047 1E-06 52.0 11.5 96 153-260 195-298 (381)
287 PLN02586 probable cinnamyl alc 96.3 0.024 5.2E-07 53.6 9.3 95 154-260 181-276 (360)
288 PF00107 ADH_zinc_N: Zinc-bind 96.2 0.014 3E-07 46.4 6.4 81 166-260 1-87 (130)
289 cd05188 MDR Medium chain reduc 96.2 0.067 1.5E-06 47.3 11.4 97 154-261 132-231 (271)
290 KOG1227 Putative methyltransfe 96.2 0.0034 7.3E-08 57.4 2.8 103 155-265 193-299 (351)
291 TIGR02818 adh_III_F_hyde S-(hy 96.2 0.08 1.7E-06 50.2 12.2 96 153-260 182-285 (368)
292 TIGR03201 dearomat_had 6-hydro 96.1 0.058 1.3E-06 50.6 10.9 97 153-260 163-270 (349)
293 TIGR00561 pntA NAD(P) transhyd 96.1 0.029 6.3E-07 55.7 8.8 96 156-263 163-286 (511)
294 cd08255 2-desacetyl-2-hydroxye 96.0 0.053 1.1E-06 48.7 9.6 93 153-260 94-188 (277)
295 PRK10309 galactitol-1-phosphat 96.0 0.067 1.4E-06 50.0 10.6 97 153-260 157-258 (347)
296 COG3129 Predicted SAM-dependen 95.9 0.027 5.8E-07 49.9 6.8 88 155-249 77-171 (292)
297 COG1062 AdhC Zn-dependent alco 95.9 0.08 1.7E-06 49.6 10.3 113 128-260 163-283 (366)
298 cd08277 liver_alcohol_DH_like 95.9 0.044 9.6E-07 51.8 8.9 96 153-260 181-284 (365)
299 PF07279 DUF1442: Protein of u 95.9 0.077 1.7E-06 46.5 9.5 144 144-300 30-184 (218)
300 PF11968 DUF3321: Putative met 95.9 0.018 3.8E-07 50.6 5.6 81 158-263 53-150 (219)
301 cd08238 sorbose_phosphate_red 95.8 0.1 2.3E-06 50.2 11.3 107 153-262 172-288 (410)
302 KOG3201 Uncharacterized conser 95.7 0.0079 1.7E-07 50.4 2.7 107 156-266 29-144 (201)
303 KOG4058 Uncharacterized conser 95.7 0.057 1.2E-06 44.7 7.5 107 143-260 61-170 (199)
304 PRK11524 putative methyltransf 95.7 0.042 9E-07 50.5 7.6 47 154-203 206-252 (284)
305 cd08300 alcohol_DH_class_III c 95.6 0.19 4.2E-06 47.5 12.4 95 153-260 183-286 (368)
306 PLN02827 Alcohol dehydrogenase 95.6 0.16 3.4E-06 48.4 11.7 96 153-260 190-293 (378)
307 KOG0822 Protein kinase inhibit 95.6 0.078 1.7E-06 52.2 9.4 95 158-259 369-475 (649)
308 TIGR02825 B4_12hDH leukotriene 95.6 0.2 4.3E-06 46.3 12.1 95 153-260 135-235 (325)
309 cd08242 MDR_like Medium chain 95.6 0.13 2.9E-06 47.1 10.9 91 153-260 152-243 (319)
310 PF01555 N6_N4_Mtase: DNA meth 95.6 0.045 9.8E-07 47.5 7.3 43 154-199 189-231 (231)
311 PLN02514 cinnamyl-alcohol dehy 95.6 0.055 1.2E-06 51.0 8.4 95 154-260 178-273 (357)
312 PLN03154 putative allyl alcoho 95.6 0.051 1.1E-06 51.2 8.0 95 153-260 155-256 (348)
313 TIGR02819 fdhA_non_GSH formald 95.5 0.16 3.4E-06 48.8 11.3 97 153-260 182-297 (393)
314 KOG2352 Predicted spermine/spe 95.3 0.1 2.2E-06 51.0 9.1 99 153-260 44-159 (482)
315 cd08285 NADP_ADH NADP(H)-depen 95.3 0.2 4.3E-06 46.9 11.0 98 153-260 163-264 (351)
316 PLN02494 adenosylhomocysteinas 95.2 0.072 1.6E-06 52.2 8.0 86 155-260 252-339 (477)
317 TIGR00936 ahcY adenosylhomocys 95.2 0.08 1.7E-06 51.2 8.1 86 155-260 193-280 (406)
318 PRK01747 mnmC bifunctional tRN 95.2 0.074 1.6E-06 54.6 8.4 106 157-262 58-206 (662)
319 PRK13699 putative methylase; P 95.2 0.084 1.8E-06 47.0 7.7 48 154-204 161-208 (227)
320 cd05285 sorbitol_DH Sorbitol d 95.2 0.21 4.5E-06 46.6 10.7 95 153-260 159-263 (343)
321 cd08234 threonine_DH_like L-th 95.2 0.18 3.9E-06 46.5 10.2 94 153-260 156-255 (334)
322 cd08301 alcohol_DH_plants Plan 95.1 0.3 6.5E-06 46.1 11.8 97 153-260 184-287 (369)
323 PLN02178 cinnamyl-alcohol dehy 95.1 0.098 2.1E-06 49.9 8.5 93 155-260 177-271 (375)
324 cd08296 CAD_like Cinnamyl alco 95.1 0.051 1.1E-06 50.5 6.4 96 153-260 160-257 (333)
325 COG1867 TRM1 N2,N2-dimethylgua 95.1 0.11 2.3E-06 49.1 8.4 99 157-262 53-154 (380)
326 PRK05476 S-adenosyl-L-homocyst 95.1 0.084 1.8E-06 51.3 8.0 86 155-260 210-297 (425)
327 cd08232 idonate-5-DH L-idonate 95.1 0.073 1.6E-06 49.4 7.4 94 156-260 165-260 (339)
328 KOG2793 Putative N2,N2-dimethy 95.1 0.2 4.3E-06 45.1 9.7 101 156-260 86-197 (248)
329 cd08294 leukotriene_B4_DH_like 95.0 0.27 5.8E-06 45.2 10.9 94 153-260 140-239 (329)
330 cd08245 CAD Cinnamyl alcohol d 95.0 0.39 8.5E-06 44.2 12.1 95 153-261 159-255 (330)
331 cd08298 CAD2 Cinnamyl alcohol 95.0 0.4 8.7E-06 44.1 12.1 90 153-260 164-254 (329)
332 cd08231 MDR_TM0436_like Hypoth 94.9 0.44 9.6E-06 44.7 12.3 95 154-260 175-278 (361)
333 cd00315 Cyt_C5_DNA_methylase C 94.8 0.1 2.2E-06 47.8 7.4 70 159-242 2-73 (275)
334 cd08233 butanediol_DH_like (2R 94.8 0.36 7.9E-06 45.0 11.4 97 153-260 169-270 (351)
335 cd08295 double_bond_reductase_ 94.8 0.14 2.9E-06 47.7 8.4 95 153-260 148-249 (338)
336 cd08293 PTGR2 Prostaglandin re 94.8 0.37 7.9E-06 44.8 11.2 94 154-260 150-252 (345)
337 cd08261 Zn_ADH7 Alcohol dehydr 94.8 0.063 1.4E-06 49.8 6.0 97 153-260 156-256 (337)
338 PTZ00357 methyltransferase; Pr 94.7 0.19 4E-06 51.2 9.3 99 159-257 703-830 (1072)
339 KOG1253 tRNA methyltransferase 94.5 0.029 6.4E-07 54.6 3.2 103 155-262 108-216 (525)
340 cd05278 FDH_like Formaldehyde 94.4 0.43 9.4E-06 44.2 10.7 97 153-260 164-265 (347)
341 cd05281 TDH Threonine dehydrog 94.4 0.47 1E-05 44.1 11.0 96 154-260 161-260 (341)
342 cd08240 6_hydroxyhexanoate_dh_ 94.3 0.71 1.5E-05 43.0 11.9 93 154-260 173-272 (350)
343 COG0604 Qor NADPH:quinone redu 94.2 0.2 4.3E-06 47.0 8.1 99 153-263 139-242 (326)
344 cd08278 benzyl_alcohol_DH Benz 94.2 0.41 9E-06 45.2 10.3 94 153-260 183-283 (365)
345 KOG0023 Alcohol dehydrogenase, 94.2 0.079 1.7E-06 49.2 5.1 97 153-260 178-277 (360)
346 KOG2798 Putative trehalase [Ca 94.2 0.26 5.6E-06 45.7 8.3 120 137-259 125-293 (369)
347 cd08286 FDH_like_ADH2 formalde 94.1 1.1 2.3E-05 41.7 12.8 98 153-260 163-264 (345)
348 TIGR00692 tdh L-threonine 3-de 94.1 0.62 1.4E-05 43.2 11.2 96 154-260 159-259 (340)
349 KOG0022 Alcohol dehydrogenase, 94.0 0.1 2.3E-06 48.3 5.5 102 144-260 182-292 (375)
350 cd08263 Zn_ADH10 Alcohol dehyd 94.0 0.65 1.4E-05 43.7 11.1 96 154-261 185-286 (367)
351 TIGR00518 alaDH alanine dehydr 94.0 0.11 2.3E-06 49.7 5.8 92 157-260 167-265 (370)
352 KOG1099 SAM-dependent methyltr 94.0 0.14 3.1E-06 45.4 5.9 86 158-260 43-161 (294)
353 PRK08306 dipicolinate synthase 93.9 0.27 5.8E-06 45.5 8.1 86 156-259 151-238 (296)
354 KOG2352 Predicted spermine/spe 93.9 0.083 1.8E-06 51.5 4.8 102 155-263 294-417 (482)
355 PRK09422 ethanol-active dehydr 93.8 0.67 1.5E-05 42.8 10.6 96 153-260 159-259 (338)
356 cd08279 Zn_ADH_class_III Class 93.7 1.3 2.8E-05 41.7 12.6 98 153-261 179-281 (363)
357 cd05284 arabinose_DH_like D-ar 93.7 0.98 2.1E-05 41.7 11.7 96 154-260 165-264 (340)
358 PRK10083 putative oxidoreducta 93.7 0.21 4.6E-06 46.3 7.1 98 153-260 157-257 (339)
359 PTZ00075 Adenosylhomocysteinas 93.6 0.21 4.5E-06 49.2 7.1 86 155-260 252-339 (476)
360 PF03269 DUF268: Caenorhabditi 93.6 0.42 9.2E-06 40.2 7.9 95 157-266 2-115 (177)
361 COG5459 Predicted rRNA methyla 93.5 0.13 2.7E-06 48.4 5.1 101 158-264 115-227 (484)
362 cd08236 sugar_DH NAD(P)-depend 93.4 0.74 1.6E-05 42.7 10.3 99 153-260 156-256 (343)
363 PF10237 N6-adenineMlase: Prob 93.3 1.5 3.3E-05 36.9 11.0 107 141-265 10-126 (162)
364 PF10354 DUF2431: Domain of un 93.3 0.95 2.1E-05 38.2 9.7 98 162-265 2-128 (166)
365 cd05279 Zn_ADH1 Liver alcohol 93.2 1.1 2.5E-05 42.1 11.4 97 153-260 180-283 (365)
366 cd08265 Zn_ADH3 Alcohol dehydr 93.2 0.74 1.6E-05 43.8 10.1 96 153-260 200-305 (384)
367 KOG2651 rRNA adenine N-6-methy 93.2 0.15 3.2E-06 48.4 5.0 42 156-199 153-194 (476)
368 cd05283 CAD1 Cinnamyl alcohol 93.1 1.2 2.6E-05 41.3 11.1 93 154-260 167-261 (337)
369 cd08284 FDH_like_2 Glutathione 93.0 1.2 2.6E-05 41.2 11.1 97 153-260 164-264 (344)
370 PF05711 TylF: Macrocin-O-meth 93.0 0.69 1.5E-05 41.7 9.0 99 158-260 76-210 (248)
371 PF03141 Methyltransf_29: Puta 92.8 0.088 1.9E-06 51.6 3.1 88 159-260 368-465 (506)
372 COG1568 Predicted methyltransf 92.7 0.7 1.5E-05 42.2 8.3 77 156-240 152-230 (354)
373 PLN02702 L-idonate 5-dehydroge 92.6 1.7 3.7E-05 40.8 11.6 97 153-260 178-283 (364)
374 cd08243 quinone_oxidoreductase 92.6 1 2.3E-05 40.7 9.9 95 153-260 139-236 (320)
375 cd08299 alcohol_DH_class_I_II_ 92.4 2.4 5.2E-05 40.2 12.4 96 153-260 187-290 (373)
376 cd08235 iditol_2_DH_like L-idi 92.4 1.8 3.8E-05 40.0 11.2 95 153-261 162-264 (343)
377 cd08274 MDR9 Medium chain dehy 92.3 1.9 4.2E-05 39.8 11.4 92 153-260 174-271 (350)
378 cd08269 Zn_ADH9 Alcohol dehydr 92.2 2 4.3E-05 38.9 11.2 94 153-260 126-227 (312)
379 cd08260 Zn_ADH6 Alcohol dehydr 92.0 2.3 5E-05 39.4 11.5 95 153-260 162-262 (345)
380 TIGR00497 hsdM type I restrict 91.9 3 6.5E-05 41.5 12.8 102 135-240 196-302 (501)
381 KOG1198 Zinc-binding oxidoredu 91.8 0.34 7.3E-06 46.0 5.6 100 153-263 154-257 (347)
382 KOG1098 Putative SAM-dependent 91.7 0.13 2.9E-06 51.4 2.9 39 153-191 41-79 (780)
383 PF02254 TrkA_N: TrkA-N domain 91.7 0.85 1.9E-05 35.3 7.1 87 165-264 4-98 (116)
384 cd08256 Zn_ADH2 Alcohol dehydr 91.7 1.8 4E-05 40.2 10.6 95 153-260 171-272 (350)
385 PRK05396 tdh L-threonine 3-deh 91.6 2 4.3E-05 39.8 10.7 97 154-261 161-262 (341)
386 cd08287 FDH_like_ADH3 formalde 91.6 2.4 5.2E-05 39.3 11.2 98 153-260 165-266 (345)
387 cd05286 QOR2 Quinone oxidoredu 91.4 3 6.6E-05 37.3 11.5 94 153-261 133-234 (320)
388 COG1565 Uncharacterized conser 91.4 1 2.3E-05 42.6 8.3 80 124-204 36-132 (370)
389 cd08297 CAD3 Cinnamyl alcohol 91.3 2.7 5.9E-05 38.8 11.2 97 153-261 162-264 (341)
390 COG1748 LYS9 Saccharopine dehy 91.2 0.53 1.2E-05 45.2 6.4 87 158-255 2-92 (389)
391 PF02636 Methyltransf_28: Puta 91.1 0.59 1.3E-05 42.0 6.2 46 158-203 20-72 (252)
392 PRK13771 putative alcohol dehy 91.0 0.9 2E-05 41.8 7.7 93 153-260 159-253 (334)
393 cd08246 crotonyl_coA_red croto 90.8 2.6 5.5E-05 40.1 10.8 101 153-260 190-313 (393)
394 COG0686 Ald Alanine dehydrogen 90.8 0.52 1.1E-05 43.8 5.6 90 158-259 169-265 (371)
395 cd08241 QOR1 Quinone oxidoredu 90.7 5.1 0.00011 35.9 12.2 96 153-260 136-236 (323)
396 PF07757 AdoMet_MTase: Predict 90.7 0.41 8.9E-06 37.5 4.1 31 156-189 58-88 (112)
397 cd08262 Zn_ADH8 Alcohol dehydr 90.7 3.2 6.9E-05 38.3 11.0 98 153-260 158-262 (341)
398 KOG2360 Proliferation-associat 90.6 0.43 9.4E-06 45.4 5.0 66 154-225 211-276 (413)
399 cd08270 MDR4 Medium chain dehy 90.6 4.8 0.0001 36.3 12.0 89 155-261 131-221 (305)
400 KOG1197 Predicted quinone oxid 90.4 1.8 4E-05 39.2 8.5 100 153-265 143-247 (336)
401 PRK05562 precorrin-2 dehydroge 90.3 2.6 5.6E-05 37.5 9.4 94 156-264 24-118 (223)
402 cd05288 PGDH Prostaglandin deh 90.2 1.2 2.7E-05 40.7 7.8 96 153-260 142-242 (329)
403 TIGR01470 cysG_Nterm siroheme 90.0 2.6 5.6E-05 36.8 9.1 92 156-264 8-102 (205)
404 cd08291 ETR_like_1 2-enoyl thi 89.9 2.9 6.2E-05 38.5 10.0 93 156-261 142-241 (324)
405 cd05289 MDR_like_2 alcohol deh 89.9 1.5 3.3E-05 39.2 8.0 94 154-261 142-237 (309)
406 cd08282 PFDH_like Pseudomonas 89.9 3.6 7.8E-05 38.9 10.9 96 153-260 173-283 (375)
407 cd08292 ETR_like_2 2-enoyl thi 89.7 5.8 0.00013 36.1 11.8 94 153-261 136-237 (324)
408 KOG2078 tRNA modification enzy 89.3 0.21 4.5E-06 48.1 1.8 66 154-226 247-312 (495)
409 cd08289 MDR_yhfp_like Yhfp put 89.0 2.5 5.3E-05 38.7 8.8 93 155-261 145-242 (326)
410 PTZ00354 alcohol dehydrogenase 88.8 9.2 0.0002 34.8 12.5 96 153-260 137-238 (334)
411 cd08276 MDR7 Medium chain dehy 88.8 10 0.00022 34.5 12.7 95 153-260 157-257 (336)
412 COG1255 Uncharacterized protei 88.8 1.7 3.7E-05 34.5 6.2 78 155-253 13-92 (129)
413 cd08258 Zn_ADH4 Alcohol dehydr 88.7 3.7 8E-05 37.6 9.7 96 153-260 161-262 (306)
414 PRK05786 fabG 3-ketoacyl-(acyl 88.7 6.4 0.00014 34.1 10.9 97 157-262 5-135 (238)
415 KOG3924 Putative protein methy 88.2 1.8 4E-05 41.4 7.3 113 141-260 179-306 (419)
416 cd08250 Mgc45594_like Mgc45594 88.1 5.5 0.00012 36.4 10.5 92 153-260 136-235 (329)
417 cd08248 RTN4I1 Human Reticulon 88.0 1.9 4.1E-05 39.9 7.4 93 156-261 162-256 (350)
418 cd08273 MDR8 Medium chain dehy 88.0 6.8 0.00015 35.8 11.0 93 153-260 136-231 (331)
419 TIGR02817 adh_fam_1 zinc-bindi 87.4 4.6 9.9E-05 37.1 9.5 93 157-261 149-246 (336)
420 PF06859 Bin3: Bicoid-interact 87.3 0.34 7.3E-06 38.0 1.6 32 231-262 1-44 (110)
421 PF05050 Methyltransf_21: Meth 87.2 2 4.3E-05 35.1 6.3 39 162-200 1-42 (167)
422 PRK11524 putative methyltransf 87.2 0.86 1.9E-05 41.8 4.4 51 213-263 7-81 (284)
423 TIGR01751 crot-CoA-red crotony 87.1 3.1 6.7E-05 39.7 8.4 102 153-261 186-309 (398)
424 cd08244 MDR_enoyl_red Possible 86.8 7.6 0.00016 35.2 10.6 96 153-261 139-240 (324)
425 cd08267 MDR1 Medium chain dehy 86.6 14 0.00031 33.2 12.2 95 154-261 141-239 (319)
426 TIGR02853 spore_dpaA dipicolin 86.4 2.5 5.4E-05 39.0 7.0 90 156-263 150-240 (287)
427 PRK08618 ornithine cyclodeamin 86.0 8.2 0.00018 36.1 10.4 118 130-264 99-222 (325)
428 TIGR02823 oxido_YhdH putative 86.0 2.1 4.5E-05 39.2 6.4 92 154-260 142-239 (323)
429 COG3510 CmcI Cephalosporin hyd 85.8 2.4 5.2E-05 36.8 6.1 111 137-260 52-178 (237)
430 PRK06940 short chain dehydroge 85.8 9.7 0.00021 34.3 10.6 75 158-241 3-86 (275)
431 cd05565 PTS_IIB_lactose PTS_II 85.7 1.4 3E-05 34.0 4.2 78 159-263 2-79 (99)
432 cd08290 ETR 2-enoyl thioester 85.7 1.8 3.9E-05 40.0 5.8 93 153-261 143-250 (341)
433 PF02826 2-Hacid_dh_C: D-isome 85.6 1.3 2.8E-05 37.6 4.4 88 156-264 35-128 (178)
434 PF05206 TRM13: Methyltransfer 85.6 2.1 4.7E-05 38.8 6.1 41 154-194 16-60 (259)
435 PF00145 DNA_methylase: C-5 cy 85.6 0.9 1.9E-05 41.7 3.8 68 159-241 2-71 (335)
436 cd05195 enoyl_red enoyl reduct 85.4 4.7 0.0001 35.4 8.3 98 153-260 105-207 (293)
437 COG0270 Dcm Site-specific DNA 85.3 5.2 0.00011 37.5 8.8 74 157-243 3-79 (328)
438 smart00829 PKS_ER Enoylreducta 85.2 4.6 9.9E-05 35.5 8.1 98 153-260 101-203 (288)
439 PRK07502 cyclohexadienyl dehyd 85.1 5 0.00011 37.0 8.5 90 158-264 7-101 (307)
440 PRK10754 quinone oxidoreductas 85.0 15 0.00033 33.4 11.7 94 153-261 137-238 (327)
441 PRK05708 2-dehydropantoate 2-r 85.0 9.4 0.0002 35.3 10.2 94 158-260 3-102 (305)
442 cd08264 Zn_ADH_like2 Alcohol d 84.7 2.7 5.9E-05 38.4 6.6 87 153-260 159-251 (325)
443 COG4301 Uncharacterized conser 84.6 26 0.00057 31.8 12.2 104 155-263 77-194 (321)
444 PF00670 AdoHcyase_NAD: S-aden 84.6 6.9 0.00015 33.0 8.2 91 154-265 20-112 (162)
445 COG2933 Predicted SAM-dependen 84.5 3.1 6.6E-05 37.9 6.3 72 153-240 208-279 (358)
446 TIGR00675 dcm DNA-methyltransf 84.4 1.8 4E-05 40.3 5.3 68 160-241 1-69 (315)
447 cd08266 Zn_ADH_like1 Alcohol d 84.4 17 0.00036 32.9 11.7 95 153-261 163-264 (342)
448 PRK08324 short chain dehydroge 84.4 6 0.00013 40.9 9.5 76 156-240 421-507 (681)
449 PF12242 Eno-Rase_NADH_b: NAD( 84.3 6.4 0.00014 28.8 6.8 34 157-190 39-73 (78)
450 cd08252 AL_MDR Arginate lyase 84.3 11 0.00023 34.5 10.4 92 157-261 150-247 (336)
451 COG0287 TyrA Prephenate dehydr 84.3 5.1 0.00011 36.8 8.0 86 157-258 3-94 (279)
452 PF08484 Methyltransf_14: C-me 83.3 4.8 0.0001 33.8 6.8 93 155-263 66-160 (160)
453 TIGR02356 adenyl_thiF thiazole 83.3 7.2 0.00016 33.8 8.2 80 157-243 21-123 (202)
454 PRK15001 SAM-dependent 23S rib 83.2 11 0.00024 36.1 10.1 103 144-260 33-140 (378)
455 cd05564 PTS_IIB_chitobiose_lic 82.9 2.6 5.7E-05 32.1 4.7 75 163-263 4-78 (96)
456 PF11899 DUF3419: Protein of u 82.8 3.2 7E-05 39.9 6.2 52 146-202 27-78 (380)
457 PRK06718 precorrin-2 dehydroge 82.4 27 0.00058 30.3 11.4 82 156-255 9-94 (202)
458 KOG2920 Predicted methyltransf 82.3 1 2.3E-05 41.2 2.6 39 154-194 114-152 (282)
459 PF03686 UPF0146: Uncharacteri 82.2 3.2 6.9E-05 33.5 5.0 88 157-264 14-105 (127)
460 PRK07806 short chain dehydroge 82.0 19 0.00041 31.4 10.6 97 157-261 6-133 (248)
461 TIGR00853 pts-lac PTS system, 81.9 3.1 6.7E-05 31.7 4.7 79 158-263 4-82 (95)
462 PRK06522 2-dehydropantoate 2-r 81.8 11 0.00024 34.2 9.4 93 158-260 1-98 (304)
463 cd05280 MDR_yhdh_yhfp Yhdh and 81.8 10 0.00022 34.4 9.1 90 157-261 147-242 (325)
464 cd05213 NAD_bind_Glutamyl_tRNA 81.2 10 0.00022 35.2 8.9 92 156-264 177-274 (311)
465 cd01483 E1_enzyme_family Super 80.5 18 0.0004 29.0 9.3 100 159-265 1-123 (143)
466 COG2130 Putative NADP-dependen 80.3 8.5 0.00018 35.8 7.7 97 153-260 147-247 (340)
467 KOG2912 Predicted DNA methylas 80.2 4.6 0.0001 37.8 6.0 75 161-241 107-188 (419)
468 PF01408 GFO_IDH_MocA: Oxidore 80.2 6.7 0.00015 30.3 6.3 89 159-261 2-92 (120)
469 PRK09496 trkA potassium transp 79.9 16 0.00035 35.3 10.2 88 140-240 214-306 (453)
470 cd08249 enoyl_reductase_like e 79.8 6.5 0.00014 36.5 7.2 93 155-261 153-253 (339)
471 PRK05808 3-hydroxybutyryl-CoA 79.7 3.9 8.5E-05 37.2 5.5 94 159-260 5-116 (282)
472 PRK10458 DNA cytosine methylas 79.6 7.3 0.00016 38.5 7.6 43 157-201 88-130 (467)
473 PRK03562 glutathione-regulated 79.5 7.6 0.00016 39.8 8.0 90 158-262 401-498 (621)
474 PRK07340 ornithine cyclodeamin 79.1 18 0.00038 33.5 9.7 117 130-264 97-218 (304)
475 cd08268 MDR2 Medium chain dehy 79.0 44 0.00094 29.9 12.3 94 153-261 141-242 (328)
476 PRK01438 murD UDP-N-acetylmura 79.0 14 0.00029 36.4 9.4 72 156-241 15-88 (480)
477 COG0863 DNA modification methy 78.8 8.8 0.00019 34.8 7.6 58 144-204 210-267 (302)
478 PRK10669 putative cation:proto 78.5 17 0.00038 36.5 10.2 92 158-264 418-517 (558)
479 PRK08293 3-hydroxybutyryl-CoA 78.5 17 0.00037 33.1 9.4 95 158-259 4-117 (287)
480 PF02737 3HCDH_N: 3-hydroxyacy 78.3 7.1 0.00015 33.2 6.3 95 159-261 1-113 (180)
481 PRK12771 putative glutamate sy 78.3 3.8 8.3E-05 41.3 5.4 35 154-190 134-169 (564)
482 KOG1201 Hydroxysteroid 17-beta 78.1 11 0.00024 34.9 7.7 75 156-241 37-124 (300)
483 cd05282 ETR_like 2-enoyl thioe 77.6 8.7 0.00019 34.8 7.2 94 154-260 136-235 (323)
484 PRK12475 thiamine/molybdopteri 77.2 12 0.00026 35.3 8.1 79 157-242 24-127 (338)
485 cd05276 p53_inducible_oxidored 77.2 27 0.00059 31.0 10.3 95 153-260 136-236 (323)
486 COG5379 BtaA S-adenosylmethion 77.1 7.9 0.00017 35.9 6.4 48 154-204 61-108 (414)
487 PRK06249 2-dehydropantoate 2-r 76.8 15 0.00032 34.0 8.5 95 157-260 5-104 (313)
488 cd08253 zeta_crystallin Zeta-c 76.8 43 0.00093 29.8 11.5 96 153-261 141-242 (325)
489 PRK08217 fabG 3-ketoacyl-(acyl 76.7 15 0.00032 31.9 8.2 77 156-240 4-91 (253)
490 PF01488 Shikimate_DH: Shikima 76.7 10 0.00022 30.5 6.6 75 156-242 11-86 (135)
491 COG4017 Uncharacterized protei 76.6 6.4 0.00014 34.2 5.4 82 154-256 42-124 (254)
492 PRK12921 2-dehydropantoate 2-r 76.6 22 0.00048 32.3 9.6 94 158-260 1-100 (305)
493 PRK10637 cysG siroheme synthas 76.5 17 0.00036 35.8 9.2 93 156-264 11-105 (457)
494 PF02558 ApbA: Ketopantoate re 76.2 9.7 0.00021 30.8 6.4 94 160-261 1-100 (151)
495 PRK05225 ketol-acid reductoiso 76.2 2.7 5.8E-05 41.3 3.4 35 230-264 96-133 (487)
496 cd00757 ThiF_MoeB_HesA_family 76.1 9.6 0.00021 33.6 6.8 80 157-243 21-123 (228)
497 PRK09260 3-hydroxybutyryl-CoA 76.1 14 0.00031 33.6 8.2 98 159-263 3-118 (288)
498 PRK07530 3-hydroxybutyryl-CoA 76.1 21 0.00046 32.5 9.3 95 158-260 5-117 (292)
499 COG0569 TrkA K+ transport syst 75.6 15 0.00033 32.5 7.9 68 158-239 1-74 (225)
500 PRK06719 precorrin-2 dehydroge 75.6 38 0.00082 28.1 9.9 82 156-256 12-95 (157)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-38 Score=271.18 Aligned_cols=199 Identities=49% Similarity=0.784 Sum_probs=187.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEc
Q 022070 87 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIG 164 (303)
Q Consensus 87 ~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIG 164 (303)
..|+++|...+ +.++++.++|..+||+.|+|+. +.+|.|.++++++|+++++|++.++|++.|+ ++++++|||||
T Consensus 4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 55888999998 5679999999999999999987 8999999999999999999999999999998 89999999999
Q ss_pred CCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCchH
Q 022070 165 SGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI 244 (303)
Q Consensus 165 cG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~v 244 (303)
||+||.++.+|+.. ++|+++|+.++.++.|++|++..+. .||.++++|...+++..++||+|+++++.+++
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV 151 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEEEEeeccCCC
Confidence 99999999999997 5999999999999999999999776 58999999999999999999999999999999
Q ss_pred HHHHHhcccCCcEEEEEEC-CCceeEEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 245 PQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 245 ~~~~~~~LkpGG~lii~v~-~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
++.+.++||+||+|++|++ ...|.+..+.|.+++++..+.+++++|+||+++.
T Consensus 152 P~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 152 PEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD 205 (209)
T ss_pred CHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence 9999999999999999999 4578899999988889999999999999999843
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=5.3e-38 Score=274.97 Aligned_cols=204 Identities=46% Similarity=0.748 Sum_probs=177.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEE
Q 022070 86 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 163 (303)
Q Consensus 86 ~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDI 163 (303)
++.|+++|++.|.++++++.++|+++||+.|+|+. ..+|.|.++++++++++++|.+.+.+++.++ +++|++||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeI 79 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEI 79 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 78999999999989999999999999999999986 6999999999999999999999999999998 9999999999
Q ss_pred cCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCch
Q 022070 164 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 243 (303)
Q Consensus 164 GcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~ 243 (303)
|||+||+++.+|+..++.++|+++|+++.+++.|++++...+. .||.++.+|...+++..++||+|+++++.++
T Consensus 80 GtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 80 GTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp S-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred cCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 9999999999999998888999999999999999999999776 4999999999998888899999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECC-CceeEEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 244 IPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 244 v~~~~~~~LkpGG~lii~v~~-~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
++..+.++||+||+|++|++. ..|.+..++|..++.|+.+.+++++|+||+++.
T Consensus 154 ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 154 IPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp --HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 999999999999999999994 578889999998899999999999999999864
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=7.2e-34 Score=250.26 Aligned_cols=205 Identities=44% Similarity=0.707 Sum_probs=188.3
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEE
Q 022070 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 161 (303)
Q Consensus 84 ~~~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VL 161 (303)
+.+++|+++|++.+.++++++.++|+.+||+.|+|.. ..+|.|.++++++|+++++|.+.+.+++.+. ++++++||
T Consensus 4 ~~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VL 81 (212)
T PRK13942 4 EEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVL 81 (212)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEE
Confidence 3568999999999999999999999999999999987 6899999999999999999999999999987 78999999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 162 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 162 DIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
|||||+|+++..+++..++.++|+++|+++++++.|+++++..+. .+++++.+|....++..++||+|+++...
T Consensus 82 dIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 82 EIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred EECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 999999999999999987768999999999999999999988765 58999999998877666899999999999
Q ss_pred chHHHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 242 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 242 ~~v~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
+++++.+.++|||||+++++++...+.+..+++. +++|..+.++++.|+||+++.
T Consensus 156 ~~~~~~l~~~LkpgG~lvi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~ 210 (212)
T PRK13942 156 PDIPKPLIEQLKDGGIMVIPVGSYSQELIRVEKD-NGKIIKKKLGEVAFVPLIGKN 210 (212)
T ss_pred ccchHHHHHhhCCCcEEEEEEcCCCcEEEEEEEE-CCEEEEEEeccEEEEecccCC
Confidence 9999999999999999999998877778888886 577999999999999999864
No 4
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=100.00 E-value=7.7e-33 Score=244.17 Aligned_cols=208 Identities=45% Similarity=0.758 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEE
Q 022070 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 161 (303)
Q Consensus 84 ~~~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VL 161 (303)
+.+++|++.|++.+.++++++.++|+++||+.|+|+. ..+|.|.+++++++++++.|.+.+.+++.+. ++++.+||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VL 82 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVL 82 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEE
Confidence 5689999999999989999999999999999999986 6899999999999999999999999999987 78999999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 162 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 162 DIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
|||||+|+++..+++..+++++|+++|+++++++.|++++.+.++ ++++++.+|+.+.++..++||+|+++...
T Consensus 83 DiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 83 EIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 999999999999999976667899999999999999999998765 58999999998766555789999999999
Q ss_pred chHHHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEEEEEeeeEEEeeccccchhc
Q 022070 242 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 300 (303)
Q Consensus 242 ~~v~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~~~ 300 (303)
+++++.+.++|||||+++++++...+.+..+.+. ++.|..+.++++.|+||+++.++.
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~ 214 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMPVGEYLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ 214 (215)
T ss_pred ccccHHHHHhcCcCcEEEEEEcCCceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence 9999999999999999999999877778888775 677999999999999999988764
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=2.3e-32 Score=239.51 Aligned_cols=201 Identities=41% Similarity=0.575 Sum_probs=180.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEE
Q 022070 86 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 163 (303)
Q Consensus 86 ~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDI 163 (303)
++.|+++|++.+.++++++.++|+++||+.|+|+. ..+|.|.++++.++++++.|.+.+.+++.+. ++++++||||
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 45799999999988999999999999999999976 6899999999999999999999999999886 7889999999
Q ss_pred cCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCch
Q 022070 164 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 243 (303)
Q Consensus 164 GcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~ 243 (303)
|||+|+.+..+++.+++.++|+++|+++++++.|++++...+.. ++++++.+|..+.++..++||+|+++...++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcccCCccCCCccEEEEccCcch
Confidence 99999999999998765689999999999999999999887653 4689999999887666679999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCC-ceeEEEEEEcCCCCEEEEEeeeEEEeecc
Q 022070 244 IPQALIDQLKPGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLT 294 (303)
Q Consensus 244 v~~~~~~~LkpGG~lii~v~~~-~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~ 294 (303)
+++.+.++|+|||++++++... .|.+..++|. ++.|+.+.++++.|+||+
T Consensus 155 ~~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 155 IPSALVRQLKDGGVLVIPVEEGVGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred hhHHHHHhcCcCcEEEEEEcCCCceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 9999999999999999999875 4556778885 567999999999999985
No 6
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=234.69 Aligned_cols=226 Identities=54% Similarity=0.934 Sum_probs=205.3
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccC
Q 022070 77 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENL 154 (303)
Q Consensus 77 ~w~~~~~~~~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l 154 (303)
.|..++ +.+++|++.|+++++|+.+++.++|+.++|..|.|.. ..+|.|.+..+|++.++++|.+++.+++.|..++
T Consensus 2 ~~~s~g-s~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L 80 (237)
T KOG1661|consen 2 GWVSSG-SDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHL 80 (237)
T ss_pred CccccC-cchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhh
Confidence 354434 7899999999999999999999999999999999985 6899999999999999999999999999999899
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhcc----CCccCCCCEEEEEcCCCCCCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPEF 229 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~~~~ 229 (303)
+||.+.||+|+|+||++.+++...+..+. ++|||.-++.++.+++++.+.-. ..-+...++.++.+|.+.++++.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 99999999999999999999988777665 49999999999999999987642 12244568999999999999999
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEEEEC--CCceeEEEEEEcCCCCEEEEEeeeEEEeeccccchhccCC
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 303 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~--~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~~~~~~ 303 (303)
.+||+|++.++..++++++.++|++||++++|++ ...|.++.+++..+|+.+...+|.+.|+||+...++..+|
T Consensus 161 a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 161 APYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred CCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCCC
Confidence 9999999999999999999999999999999999 4578889999999999999999999999999999988775
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.97 E-value=6.1e-29 Score=218.65 Aligned_cols=202 Identities=41% Similarity=0.650 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC--CCCCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEE
Q 022070 84 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 161 (303)
Q Consensus 84 ~~~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~--~~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VL 161 (303)
+.+..|+++|...+ +.++++.++|+.++|+.|+|+. ..+|.|..+++++++.+++|.+.+.++..+. ++++++||
T Consensus 7 ~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL 83 (212)
T PRK00312 7 ERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83 (212)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence 57899999999999 7899999999999999999965 6899999999999999999999999998886 78899999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 162 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 162 DIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
|+|||+|+.+..+++.. .+|+++|+++++++.|++++.+.++ .++++..+|..+.++..++||+|+++..+
T Consensus 84 eiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred EECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 99999999999998885 5899999999999999999988765 47999999987766655789999999999
Q ss_pred chHHHHHHhcccCCcEEEEEEC-CCceeEEEEEEcCCCCEEEEEeeeEEEeeccccch
Q 022070 242 PEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 298 (303)
Q Consensus 242 ~~v~~~~~~~LkpGG~lii~v~-~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~ 298 (303)
+++++.+.+.|+|||+++++++ ...+....+.+ .++.|..+.++++.|+|++++.+
T Consensus 155 ~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 211 (212)
T PRK00312 155 PEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKGEL 211 (212)
T ss_pred hhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCCCC
Confidence 9999999999999999999998 44566677777 47789999999999999998865
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.93 E-value=1.7e-24 Score=201.13 Aligned_cols=205 Identities=28% Similarity=0.453 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCcCCCCC---CCCCcCCCCcc-cCC---CCcChHHHHHHHHHHHHccCCCC
Q 022070 85 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI-GYN---ATISAPHMHATCLQLLEENLKPG 157 (303)
Q Consensus 85 ~~~~li~~l~~~~~i~~~~v~~~~~~v~R~~fvp~~---~~~y~d~~~~~-~~g---~~i~~p~~~~~~l~~l~~~l~~g 157 (303)
.+..|++.++..| +++ ++.++|+++||+.|+|+. ..+|.|.++++ .++ +++++|.+.+.+++.+. ++++
T Consensus 6 ~~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g 81 (322)
T PRK13943 6 MREKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKG 81 (322)
T ss_pred HHHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCC
Confidence 4578999999999 566 999999999999999986 45788888875 555 57888999999988886 7889
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
++|||||||+|+++..+++..+..++|+++|+++++++.|+++++..+. +++.++.+|..+.++..++||+|++
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCccEEEE
Confidence 9999999999999999999876556899999999999999999988765 4899999998776655578999999
Q ss_pred cCCCchHHHHHHhcccCCcEEEEEECCC---ceeEEEEEEcCCCCEEEEEeeeEEEeeccccchhc
Q 022070 238 GAAAPEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 300 (303)
Q Consensus 238 ~~~~~~v~~~~~~~LkpGG~lii~v~~~---~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~~~ 300 (303)
+...+++++.+.+.|+|||+++++++.. .+....+++. ++.++....+.++|+|..+..+.+
T Consensus 156 ~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg~~ 220 (322)
T PRK13943 156 TVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLGNL 220 (322)
T ss_pred CCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHHHH
Confidence 9999899999999999999999988653 2334555554 556888899999999997766543
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.7e-21 Score=176.06 Aligned_cols=172 Identities=24% Similarity=0.234 Sum_probs=136.4
Q ss_pred HhCCCCcCCCCC-CCCCcCCCCcccCC------CCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCC
Q 022070 109 ETIDRACFVPDG-TPPYVDSPMAIGYN------ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 181 (303)
Q Consensus 109 ~~v~R~~fvp~~-~~~y~d~~~~~~~g------~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~ 181 (303)
+.++.|+-+++. ...++|+.|.|+|. .++.+++..+.-..+-+.+++||++|||||||||.++.++|+.++
T Consensus 18 ~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-- 95 (283)
T COG2230 18 ENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-- 95 (283)
T ss_pred hhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--
Confidence 334444444444 46678999999886 367888877776666666799999999999999999999999986
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCchH--------HHHHHhccc
Q 022070 182 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLK 253 (303)
Q Consensus 182 ~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~v--------~~~~~~~Lk 253 (303)
++|+|+++|+++.+.++++++..|+. .+++++..|+++.. ++||+|++.++++++ ++.+.+.|+
T Consensus 96 v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 96 VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 89999999999999999999998875 58999999998843 559999999999876 578899999
Q ss_pred CCcEEEEEECCC-ceeEEEEEEcCCCCEEEEEeeeEEEeeccc
Q 022070 254 PGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLTS 295 (303)
Q Consensus 254 pGG~lii~v~~~-~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~ 295 (303)
|||++++-.-.. .+... ....|..+.+||-.++|-.+
T Consensus 168 ~~G~~llh~I~~~~~~~~-----~~~~~i~~yiFPgG~lPs~~ 205 (283)
T COG2230 168 PGGRMLLHSITGPDQEFR-----RFPDFIDKYIFPGGELPSIS 205 (283)
T ss_pred CCceEEEEEecCCCcccc-----cchHHHHHhCCCCCcCCCHH
Confidence 999999743322 22111 24458888899999988444
No 10
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.84 E-value=3.9e-20 Score=176.28 Aligned_cols=222 Identities=18% Similarity=0.183 Sum_probs=153.4
Q ss_pred CCCCceeeccccccCCCCccchhhh-cCCccccc--CcccccCCChhhHHHHHHHHHHcCCCCCHH----HHHHHHh---
Q 022070 41 SPSPSLVSLSSSFHLPNPDNLSRFL-TGNCPFFK--MERSWSGSGVNKNKAMVEHLQHYGVITSKK----VSEVMET--- 110 (303)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--m~~~w~~~~~~~~~~li~~l~~~~~i~~~~----v~~~~~~--- 110 (303)
.+.|++.+ .+++++++.|++ .|.++++| |+|+|++ +.+..++..+.+.+. +.. +.+.+..
T Consensus 32 ~~~~~~~~-----~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~---~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 101 (383)
T PRK11705 32 NGSRPWDI-----QVHNPRFFKRVLQEGSLGLGESYMDGWWDC---DRLDEFFSRVLRAGL--DEKLPHHLKDTLRILRA 101 (383)
T ss_pred CCCCCeEE-----EECCHHHHHHHhccCCccHHHHHHcCCeec---CCHHHHHHHHHHccc--hhhhhhhHHHHHHHHHH
Confidence 45577777 889999999999 88999999 9999999 467777777666652 111 1111111
Q ss_pred --------------CCCCcCCCCC-CCCCcCCCCcccCCCC-----cChHHHHH--HHHHHHHccCCCCCEEEEEcCCcc
Q 022070 111 --------------IDRACFVPDG-TPPYVDSPMAIGYNAT-----ISAPHMHA--TCLQLLEENLKPGMHALDIGSGTG 168 (303)
Q Consensus 111 --------------v~R~~fvp~~-~~~y~d~~~~~~~g~~-----i~~p~~~~--~~l~~l~~~l~~g~~VLDIGcG~G 168 (303)
+..|+-+++. ...+.|+.|.|+||-. +..++..+ .+++.+ .++++++|||||||+|
T Consensus 102 ~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l--~l~~g~rVLDIGcG~G 179 (383)
T PRK11705 102 RLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKL--QLKPGMRVLDIGCGWG 179 (383)
T ss_pred HHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHh--CCCCCCEEEEeCCCcc
Confidence 1112223322 3566788898888732 33333322 233433 3789999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCchH----
Q 022070 169 YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI---- 244 (303)
Q Consensus 169 ~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~v---- 244 (303)
.++..+++.++ .+|+|+|+|+++++.|++++.. .++++...|+.+. .+.||.|++..+++++
T Consensus 180 ~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~ 245 (383)
T PRK11705 180 GLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKN 245 (383)
T ss_pred HHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEEEEeCchhhCChHH
Confidence 99999998865 7999999999999999998743 2578888888653 3789999998876543
Q ss_pred ----HHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEEEEEeeeEEEeec
Q 022070 245 ----PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPL 293 (303)
Q Consensus 245 ----~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl 293 (303)
++.+.+.|||||++++........ ......|..+.++|..++|-
T Consensus 246 ~~~~l~~i~r~LkpGG~lvl~~i~~~~~-----~~~~~~~i~~yifp~g~lps 293 (383)
T PRK11705 246 YRTYFEVVRRCLKPDGLFLLHTIGSNKT-----DTNVDPWINKYIFPNGCLPS 293 (383)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCCC-----CCCCCCCceeeecCCCcCCC
Confidence 577889999999999865332110 11123466666676666664
No 11
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.78 E-value=1.2e-18 Score=158.82 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCCcCCCCcccCC------CCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 022070 122 PPYVDSPMAIGYN------ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV 195 (303)
Q Consensus 122 ~~y~d~~~~~~~g------~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~ 195 (303)
..++|+.|.|+|+ .++.+++..+.-..+-+..+++|++|||||||||.++..+|+.+| ++|+|+++|+++.+
T Consensus 22 ~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~ 99 (273)
T PF02353_consen 22 RLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAE 99 (273)
T ss_dssp TTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHH
T ss_pred HHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHH
Confidence 6688999999887 334444443332222223489999999999999999999999986 89999999999999
Q ss_pred HHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCchH--------HHHHHhcccCCcEEEEEECCCce
Q 022070 196 SSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNIFQ 267 (303)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~v--------~~~~~~~LkpGG~lii~v~~~~~ 267 (303)
.+++++.+.++. +++++.+.|+++.. ++||.|++.++++|+ ++.+.++|||||++++..-....
T Consensus 100 ~a~~~~~~~gl~-----~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 100 YARERIREAGLE-----DRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp HHHHHHHCSTSS-----STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred HHHHHHHhcCCC-----CceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999998875 68999999998732 499999999999876 57889999999999974321100
Q ss_pred eEEEEEEcCCCCEEEEEeeeEEEeecc
Q 022070 268 DLKVVDKNQDGSLSIWSETSVRYVPLT 294 (303)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~v~f~Pl~ 294 (303)
............|..+.+||...+|..
T Consensus 172 ~~~~~~~~~~~~~i~kyiFPgg~lps~ 198 (273)
T PF02353_consen 172 PPYHAERRSSSDFIRKYIFPGGYLPSL 198 (273)
T ss_dssp HHHHHCTTCCCHHHHHHTSTTS---BH
T ss_pred ccchhhcCCCceEEEEeeCCCCCCCCH
Confidence 000000000124656667777666643
No 12
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=4e-16 Score=132.48 Aligned_cols=124 Identities=31% Similarity=0.503 Sum_probs=109.0
Q ss_pred cCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022070 132 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 211 (303)
Q Consensus 132 ~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~ 211 (303)
..+..++.+.+.+..+..|. +++|++++|||||+|..+..+| +.++.++|+++|.++++++..++|+.+.++
T Consensus 12 ~~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----- 83 (187)
T COG2242 12 DEGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV----- 83 (187)
T ss_pred CCCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC-----
Confidence 33455888888888888887 8999999999999999999999 557889999999999999999999999875
Q ss_pred CCCEEEEEcCCCCCCCCCCCccEEEEcCC--CchHHHHHHhcccCCcEEEEEECC
Q 022070 212 EGSLSVHVGDGRKGWPEFAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 212 ~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~--~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+|++++.+++.+.++....||.||..+. .+.+++.+...|||||++|+..-+
T Consensus 84 -~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 84 -DNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred -CcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 6999999999988776568999999986 357889999999999999986644
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=4e-16 Score=122.65 Aligned_cols=100 Identities=29% Similarity=0.510 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
|+.+|||||||+|.++..+++.. +..+|+|+|+|+++++.|+++....+.. ++++++.+|+.......++||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS-----DRITFVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT-----TTEEEEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECccccCcccCCCCCEE
Confidence 57899999999999999999964 4489999999999999999999665544 69999999992122233689999
Q ss_pred EEcC-CCc---------hHHHHHHhcccCCcEEEEE
Q 022070 236 HVGA-AAP---------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 236 v~~~-~~~---------~v~~~~~~~LkpGG~lii~ 261 (303)
++.. ... .+++.+.+.|+|||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999 322 2367889999999999985
No 14
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.9e-16 Score=140.77 Aligned_cols=151 Identities=27% Similarity=0.387 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHh-------CCCCcCCCCCC----C-----CCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEE
Q 022070 99 ITSKKVSEVMET-------IDRACFVPDGT----P-----PYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 162 (303)
Q Consensus 99 i~~~~v~~~~~~-------v~R~~fvp~~~----~-----~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLD 162 (303)
+.+++|.+...+ ..|-...|.|. . -.+|+.++||.|.|-+ ...+++.+...+++|++|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpT----T~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPT----TSLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChh----HHHHHHHHHHhhcCCCEEEE
Confidence 346777777643 23334556552 1 3468999999998876 47778888777889999999
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC-
Q 022070 163 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 241 (303)
Q Consensus 163 IGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~- 241 (303)
+|||||.++..+++. |. .+|+|+|+++-.++.|++|...+++. ..+.....+..+. +..++||+|++|-..
T Consensus 169 vGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~-~~~~~~DvIVANILA~ 240 (300)
T COG2264 169 VGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEV-PENGPFDVIVANILAE 240 (300)
T ss_pred ecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhh-cccCcccEEEehhhHH
Confidence 999999999999988 44 68999999999999999999998764 1122333333332 233799999999743
Q ss_pred --chHHHHHHhcccCCcEEEEE
Q 022070 242 --PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 242 --~~v~~~~~~~LkpGG~lii~ 261 (303)
..+.+.+.+.|||||+++++
T Consensus 241 vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEE
Confidence 34567889999999999984
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=8.2e-16 Score=137.21 Aligned_cols=108 Identities=30% Similarity=0.497 Sum_probs=79.4
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.+++.+. .++|.+|||+|||+|..+..+++..+++++|+++|+|++|++.|++++...+. .+|+++++|+.+
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~ 109 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAED 109 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHH
Confidence 3444444 68899999999999999999999888888999999999999999999988655 499999999988
Q ss_pred CCCCCCCccEEEEcCCCchH------HHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v------~~~~~~~LkpGG~lii 260 (303)
...++++||.|++...++++ ++++.|.|||||++++
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 66666899999998877543 5789999999999987
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.8e-15 Score=134.55 Aligned_cols=100 Identities=26% Similarity=0.457 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.++|++|||+|||||-.+..+++..| .++|+++|+|+.|++.|++++.+.+.. +++++++|+.+...++.+||
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~------~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQ------NVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCcc------ceEEEEechhhCCCCCCccC
Confidence 45899999999999999999999987 699999999999999999999886653 59999999998777779999
Q ss_pred EEEEcCCCc------hHHHHHHhcccCCcEEEE
Q 022070 234 AIHVGAAAP------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~------~v~~~~~~~LkpGG~lii 260 (303)
+|.+...++ .+++++.|.|||||++++
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 999988764 446899999999998886
No 17
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.62 E-value=1.8e-14 Score=114.74 Aligned_cols=115 Identities=29% Similarity=0.474 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022070 139 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 218 (303)
Q Consensus 139 ~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~ 218 (303)
+..+...++..+. +.++++|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++..+. .+++++
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~ 74 (124)
T TIGR02469 4 KREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV------SNIVIV 74 (124)
T ss_pred hHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC------CceEEE
Confidence 3444556666664 66788999999999999999999863 48999999999999999999888654 478899
Q ss_pred EcCCCCCCC-CCCCccEEEEcCCC---chHHHHHHhcccCCcEEEEEE
Q 022070 219 VGDGRKGWP-EFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 219 ~~D~~~~~~-~~~~fD~Iv~~~~~---~~v~~~~~~~LkpGG~lii~v 262 (303)
.+|+..... ..++||.|++.... ..+++.+.+.|||||++++.+
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 888764322 23689999998754 347789999999999999865
No 18
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.2e-15 Score=135.08 Aligned_cols=139 Identities=27% Similarity=0.431 Sum_probs=115.1
Q ss_pred CCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022070 135 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 214 (303)
Q Consensus 135 ~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~ 214 (303)
..+-.|...++++..+. +.||++|+|.|+|||.++++||...++.++|++.|+.++.++.|++|++..++. ++
T Consensus 75 tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-----d~ 147 (256)
T COG2519 75 TQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-----DR 147 (256)
T ss_pred CceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-----cc
Confidence 33444455677777776 899999999999999999999999999999999999999999999999998775 45
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEcCCCc-hHHHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEE
Q 022070 215 LSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLS 281 (303)
Q Consensus 215 v~~~~~D~~~~~~~~~~fD~Iv~~~~~~-~v~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~ 281 (303)
|++..+|..+...+ ..||+|+.+..-+ ++.+.+.+.|||||.+++-+++..|..+.+....+..|.
T Consensus 148 v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 148 VTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred eEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 99999999987766 4999999998776 467999999999999999888877655554444333343
No 19
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=1.2e-14 Score=125.20 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=95.9
Q ss_pred CCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022070 134 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 213 (303)
Q Consensus 134 g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~ 213 (303)
...++.+...+.++..+. +.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|++++...++ .
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~ 81 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------G 81 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------C
Confidence 445666677677777775 6788899999999999999999985 568999999999999999999987654 4
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEEcCCC---chHHHHHHhcccCCcEEEEEE
Q 022070 214 SLSVHVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 214 ~v~~~~~D~~~~~~~~~~fD~Iv~~~~~---~~v~~~~~~~LkpGG~lii~v 262 (303)
+++++.+|..... .+.||+|+++... ..+.+.+.+.|+|||++++..
T Consensus 82 ~i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 82 NIDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CeEEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 7899998875433 2689999998753 446678899999999999854
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=1e-14 Score=121.47 Aligned_cols=103 Identities=25% Similarity=0.409 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~~f 232 (303)
+.+.+|||+|||+|.++..+++..++.++++|+|+|+++++.|+++++..+. +++++.++|+.+ ++.. +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-cccccCCCe
Confidence 4678999999999999999997656778999999999999999999988765 489999999998 4422 799
Q ss_pred cEEEEcCCCc------hHHHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+|++..++. .+++.+.+.|++||.+++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999998763 3467899999999999985544
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=1.7e-14 Score=125.54 Aligned_cols=123 Identities=28% Similarity=0.376 Sum_probs=98.5
Q ss_pred CCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022070 135 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 214 (303)
Q Consensus 135 ~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~ 214 (303)
..++........+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+++.+++.|+++++.+++. ++
T Consensus 21 ~~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~ 93 (198)
T PRK00377 21 IPMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NN 93 (198)
T ss_pred CCCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CC
Confidence 34666666555566554 789999999999999999999988766689999999999999999999887643 58
Q ss_pred EEEEEcCCCCCCCC-CCCccEEEEcCC---CchHHHHHHhcccCCcEEEEEECC
Q 022070 215 LSVHVGDGRKGWPE-FAPYDAIHVGAA---APEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 215 v~~~~~D~~~~~~~-~~~fD~Iv~~~~---~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
++++.+|..+..+. .+.||+|+++.. ...+++.+.+.|||||++++....
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 99999998764332 268999999654 356778889999999999985443
No 22
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.59 E-value=3.2e-15 Score=137.25 Aligned_cols=123 Identities=28% Similarity=0.465 Sum_probs=94.6
Q ss_pred CcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 124 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 124 y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
..|+.|+||.|.|-+ ...+++.+.....+|++|||+|||||.++..+++. |. .+|+|+|+++..++.|++|...
T Consensus 133 ~idPg~AFGTG~H~T----T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 133 EIDPGMAFGTGHHPT----TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp EESTTSSS-SSHCHH----HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHH
T ss_pred EECCCCcccCCCCHH----HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHH
Confidence 578999999998876 46777777766789999999999999999999987 54 5899999999999999999999
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc---hHHHHHHhcccCCcEEEEE
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~ 261 (303)
+++. .++.+. ...+ .. .++||+|++|-... .+...+.+.|+|||+++++
T Consensus 207 N~~~-----~~~~v~--~~~~-~~-~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 207 NGVE-----DRIEVS--LSED-LV-EGKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp TT-T-----TCEEES--CTSC-TC-CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cCCC-----eeEEEE--Eecc-cc-cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 9875 455442 2222 12 28999999997654 4456778899999999983
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=4.3e-14 Score=122.05 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
++++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.|+++.+..++ ++++++.+|+.+... .++||
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCcc
Confidence 5668999999999999999999874 558999999999999999999998765 369999999877544 57899
Q ss_pred EEEEcCC--CchHHHHHHhcccCCcEEEEEECCC
Q 022070 234 AIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 234 ~Iv~~~~--~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+|+++.. .+.+++.+.++|||||++++..+..
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9999764 3567789999999999999987653
No 24
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.59 E-value=2.2e-14 Score=132.03 Aligned_cols=127 Identities=24% Similarity=0.332 Sum_probs=97.8
Q ss_pred CCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 022070 123 PYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 202 (303)
Q Consensus 123 ~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~ 202 (303)
...|+.+++|.|.|.+. ..+++.+.....++++|||+|||+|.++..+++. +. .+|+++|+++.+++.|++++.
T Consensus 130 i~ldpg~aFgtG~h~tt----~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 130 IMLDPGLAFGTGTHPTT----SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred EEECCCCcccCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHH
Confidence 45688999999977553 4455555444578899999999999999888875 43 699999999999999999998
Q ss_pred HhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc---hHHHHHHhcccCCcEEEEEE
Q 022070 203 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~v 262 (303)
.+++. .++.+..++.... ..++||+|+++.... .+++.+.+.|||||+++++-
T Consensus 204 ~n~~~-----~~~~~~~~~~~~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 204 LNQVS-----DRLQVKLIYLEQP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HcCCC-----cceEEEecccccc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 87654 3566666653322 236899999987654 45678899999999999853
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=99.59 E-value=2e-14 Score=135.21 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
+++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+++....++. ++++++.+|+.+.....+.||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~-----~~v~~~~~D~~~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS-----DKVSFQVADALNQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEcCcccCCCCCCCccE
Confidence 6788999999999999999999864 79999999999999999988876653 5799999999775444589999
Q ss_pred EEEcCCCch------HHHHHHhcccCCcEEEEEE
Q 022070 235 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 235 Iv~~~~~~~------v~~~~~~~LkpGG~lii~v 262 (303)
|++....++ +++++.+.|||||++++..
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999877654 4578999999999999854
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=4.4e-14 Score=125.42 Aligned_cols=112 Identities=19% Similarity=0.369 Sum_probs=91.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. ++++++|||+|||+|..+..+++..++.++|+|+|+++++++.|++++...+. ++++++.+|..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh
Confidence 34555554 67889999999999999999999877778999999999999999999876544 48999999987
Q ss_pred CCCCCCCCccEEEEcCCCch------HHHHHHhcccCCcEEEEEEC
Q 022070 224 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~------v~~~~~~~LkpGG~lii~v~ 263 (303)
+.....++||+|+++..+++ +++++.+.|+|||++++...
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 64434478999998766543 45778999999999997543
No 27
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.58 E-value=8e-15 Score=131.33 Aligned_cols=153 Identities=25% Similarity=0.335 Sum_probs=113.8
Q ss_pred cCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022070 132 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 211 (303)
Q Consensus 132 ~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~ 211 (303)
.....|.-|.....++..+. ++||++|||.|+|+|.++.++++.+++.++|+..|+.++.++.|+++++..++.
T Consensus 18 ~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~---- 91 (247)
T PF08704_consen 18 PRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD---- 91 (247)
T ss_dssp -SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----
T ss_pred cCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----
Confidence 33455666677788888887 999999999999999999999999999999999999999999999999998875
Q ss_pred CCCEEEEEcCCCC-CCCC--CCCccEEEEcCCCch-HHHHHHhcc-cCCcEEEEEECCCceeEEEEEEcCCCCEEEEEee
Q 022070 212 EGSLSVHVGDGRK-GWPE--FAPYDAIHVGAAAPE-IPQALIDQL-KPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSET 286 (303)
Q Consensus 212 ~~~v~~~~~D~~~-~~~~--~~~fD~Iv~~~~~~~-v~~~~~~~L-kpGG~lii~v~~~~~~~~~~~~~~~~~~~~~~l~ 286 (303)
++|++.+.|+.+ +... ...+|.|+.+.+-++ ..+.+.+.| |+||++++-+++..|..+.+....+..|......
T Consensus 92 -~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 92 -DNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp -TTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred -CCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEE
Confidence 689999999864 3321 267999999998876 678999999 9999999999887765555544444346554555
Q ss_pred eEEEe
Q 022070 287 SVRYV 291 (303)
Q Consensus 287 ~v~f~ 291 (303)
++.--
T Consensus 171 Evl~R 175 (247)
T PF08704_consen 171 EVLLR 175 (247)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 44433
No 28
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=3.4e-14 Score=128.97 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
++++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++...... ....+++++++|+.+.....+.||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 67889999999999999999999876668999999999999999887542110 011489999999877544557899
Q ss_pred EEEEcCCCch------HHHHHHhcccCCcEEEEEE
Q 022070 234 AIHVGAAAPE------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 234 ~Iv~~~~~~~------v~~~~~~~LkpGG~lii~v 262 (303)
.|++...+++ +++++.+.|||||++++..
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 9999876654 4688999999999998854
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=5.4e-14 Score=119.63 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+... ++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..+++. ++++...|..
T Consensus 21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~------~v~~~~~d~~ 91 (170)
T PF05175_consen 21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLE------NVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCT------TEEEEESSTT
T ss_pred HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcc------cccccccccc
Confidence 4566666532 67799999999999999999985 6678999999999999999999998763 4999999998
Q ss_pred CCCCCCCCccEEEEcCCC-----------chHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~-----------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+..+ .++||+|+++.++ +.+++.+.+.|||||.+++....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 8665 4899999999865 23456788999999999886654
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.57 E-value=3.1e-14 Score=122.39 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
++.+|||+|||+|.++..++.. ++.++|+++|.|+++++.+++++++.++ ++++++.+|+.+. ...++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~-~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDF-QHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhc-cccCCccEE
Confidence 4789999999999999999876 4568999999999999999999988765 4799999998774 334799999
Q ss_pred EEcCC--CchHHHHHHhcccCCcEEEEEECCC
Q 022070 236 HVGAA--APEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 236 v~~~~--~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+++.. .+.+.+.+.+.|+|||++++..+..
T Consensus 114 ~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 99862 2445677889999999999987654
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.55 E-value=4.4e-14 Score=129.75 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=101.3
Q ss_pred CCCCcccCCCCcChHHHHHHHHHHHHcc--CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 126 DSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 126 d~~~~~~~g~~i~~p~~~~~~l~~l~~~--l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
...+.++.+..++.|.+...+...+... .+++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++|+..
T Consensus 89 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 89 GLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred CcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3445566677777776655554444321 2345799999999999999999985 557999999999999999999998
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC-------------------------------chHHHHHHhcc
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 252 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~-------------------------------~~v~~~~~~~L 252 (303)
+++. ++++++.+|..+..+. ++||+|+++.+. ..+++.+.+.|
T Consensus 168 ~~~~-----~~i~~~~~D~~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L 241 (284)
T TIGR03533 168 HGLE-----DRVTLIQSDLFAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHL 241 (284)
T ss_pred cCCC-----CcEEEEECchhhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 7653 4799999998765432 589999998542 12345667899
Q ss_pred cCCcEEEEEECCC
Q 022070 253 KPGGRMVIPVGNI 265 (303)
Q Consensus 253 kpGG~lii~v~~~ 265 (303)
+|||++++.++..
T Consensus 242 ~~gG~l~~e~g~~ 254 (284)
T TIGR03533 242 NENGVLVVEVGNS 254 (284)
T ss_pred CCCCEEEEEECcC
Confidence 9999999998864
No 32
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=6.7e-15 Score=129.32 Aligned_cols=132 Identities=20% Similarity=0.325 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
+|.+|||||||-|.++..+|+. | .+|+|+|+++..++.|+.+..+.++ ++++......+.....++||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-C--CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccEE
Confidence 7899999999999999999998 4 8999999999999999999888765 4556666655544444899999
Q ss_pred EEcCCCchHH------HHHHhcccCCcEEEEEECCCc----------------------eeEEE-------EEEcCCCCE
Q 022070 236 HVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF----------------------QDLKV-------VDKNQDGSL 280 (303)
Q Consensus 236 v~~~~~~~v~------~~~~~~LkpGG~lii~v~~~~----------------------~~~~~-------~~~~~~~~~ 280 (303)
+|..+++|++ +.+.+++||||.++++..+.. ..... +....+..|
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 9999998875 568899999999999765431 11111 122223468
Q ss_pred EEEEeeeEEEeeccccc
Q 022070 281 SIWSETSVRYVPLTSRD 297 (303)
Q Consensus 281 ~~~~l~~v~f~Pl~~~~ 297 (303)
......++.|.|++..-
T Consensus 209 ~~~~~~g~~y~p~~~~~ 225 (243)
T COG2227 209 KIIDRKGLTYNPLTNSW 225 (243)
T ss_pred eEEeecceEeccccceE
Confidence 88999999999988753
No 33
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.54 E-value=9e-14 Score=125.42 Aligned_cols=119 Identities=30% Similarity=0.483 Sum_probs=90.1
Q ss_pred CcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 124 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 124 y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
..|+.+++++|.+-+. ..+++.+...+.++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|++++..
T Consensus 91 ~i~p~~afgtg~h~tt----~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 91 ELDPGMAFGTGTHPTT----RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred EECCCCccCCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHH
Confidence 4578889998876553 3445555444678899999999999999887765 44 4799999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc---hHHHHHHhcccCCcEEEEE
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~ 261 (303)
+++. .++.+..++ .+||+|+++...+ .+.+.+.+.|||||++++.
T Consensus 165 ~~~~-----~~~~~~~~~--------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 165 NGVE-----LNVYLPQGD--------LKADVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCCC-----ceEEEccCC--------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6542 234443332 2799999986543 4457888999999999986
No 34
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.52 E-value=2.6e-13 Score=117.91 Aligned_cols=123 Identities=25% Similarity=0.402 Sum_probs=96.9
Q ss_pred CCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022070 134 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 213 (303)
Q Consensus 134 g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~ 213 (303)
|..++++.....++..+. ++++.+|||+|||+|.++..+++.. +.++|+++|+++++++.+++++++.+. .
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~------~ 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV------K 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC------C
Confidence 445666676666777775 6788999999999999999998774 558999999999999999999988765 4
Q ss_pred CEEEEEcCCCCCCCC-CCCccEEEEcCC--CchHHHHHHhcccCCcEEEEEECCC
Q 022070 214 SLSVHVGDGRKGWPE-FAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 214 ~v~~~~~D~~~~~~~-~~~fD~Iv~~~~--~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+++++.+|+.+.+.. ...+|.|+.... .+.+++.+.+.|+|||++++...+.
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 91 NVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 799999998653222 135688877643 3567889999999999999976553
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=1.7e-13 Score=124.81 Aligned_cols=102 Identities=30% Similarity=0.464 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
++++++|||+|||+|..+..+++..++.++|+++|+++++++.|+++....+. .++++..+|..+.....+.||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 67899999999999999988888877777999999999999999999887654 488999999876433346899
Q ss_pred EEEEcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 234 AIHVGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 234 ~Iv~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
+|+++..+ +.+++++.+.|||||++++.
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99998754 35678999999999999983
No 36
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=9.4e-14 Score=125.49 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=84.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++ +++++.+|+.
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------GVDARTGDVR 82 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh
Confidence 34455554 5678899999999999999999985 557999999999999998652 5778899987
Q ss_pred CCCCCCCCccEEEEcCCCchH------HHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~v------~~~~~~~LkpGG~lii~v~~ 264 (303)
+.. ..++||+|+++..++++ ++++.+.|||||++++.++.
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 543 34789999999877554 46888999999999987643
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.51 E-value=6.9e-14 Score=105.75 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=73.7
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCC
Q 022070 161 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 240 (303)
Q Consensus 161 LDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~ 240 (303)
||+|||+|..+..+++. +..+|+++|+++++++.++++... .++.+..+|..+...+.+.||+|++...
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCccccccccccccccc
Confidence 89999999999999998 338999999999999999998755 3677999999887656689999999988
Q ss_pred CchH------HHHHHhcccCCcEEEE
Q 022070 241 APEI------PQALIDQLKPGGRMVI 260 (303)
Q Consensus 241 ~~~v------~~~~~~~LkpGG~lii 260 (303)
++++ ++++.+.|||||++++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 7654 5789999999999985
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=2.7e-13 Score=122.07 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=84.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~-g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+.++.+|||+|||+|..+..+++.+ .++.+|+|+|+|+.+++.|++++...+.. .+++++.+|..+... +.
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~ 125 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIAI--EN 125 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEeCChhhCCC--CC
Confidence 36788999999999999999888853 35689999999999999999999876543 479999999876432 46
Q ss_pred ccEEEEcCCCc--------hHHHHHHhcccCCcEEEEE
Q 022070 232 YDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 232 fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii~ 261 (303)
+|+|+++..++ .+++++.+.|||||.+++.
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999876543 3568899999999999985
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=2.1e-13 Score=118.69 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=83.2
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.+++.+. ..++.+|||+|||+|..+..+|+. + .+|+|+|+|+++++.++++....++ .++++...|..+
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~-g--~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~ 89 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN-G--FDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNN 89 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC-C--CEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhh
Confidence 4445554 456689999999999999999987 3 6999999999999999998887654 368888888866
Q ss_pred CCCCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii 260 (303)
... .+.||+|++...+. .+++.+.+.|||||++++
T Consensus 90 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 90 LTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 433 36799999987653 345788999999999654
No 40
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=9.4e-14 Score=129.40 Aligned_cols=103 Identities=21% Similarity=0.260 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.++.+|||||||+|.++..+++. + .+|+|||.++++++.|+++....+.. .+++++++|+.+.....+.||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~~-----~~i~~~~~dae~l~~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPVT-----STIEYLCTTAEKLADEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCcc-----cceeEEecCHHHhhhccCCCCE
Confidence 46789999999999999999875 3 79999999999999999876543321 4789999997664334478999
Q ss_pred EEEcCCCchH------HHHHHhcccCCcEEEEEECCC
Q 022070 235 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 235 Iv~~~~~~~v------~~~~~~~LkpGG~lii~v~~~ 265 (303)
|++..+++|+ ++++.++|||||.+++...+.
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9999888765 578899999999999986543
No 41
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=4.3e-13 Score=119.16 Aligned_cols=113 Identities=22% Similarity=0.263 Sum_probs=87.1
Q ss_pred HHHHHHHHH-HccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 142 MHATCLQLL-EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 142 ~~~~~l~~l-~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
....++..+ ...+++|++|||+|||+|..+..+++.++ .++|+++|+++++++.+.+++++. .|+.++.+
T Consensus 57 ~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~ 127 (226)
T PRK04266 57 LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIPILA 127 (226)
T ss_pred hHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEEC
Confidence 345555533 23478999999999999999999999975 579999999999999887776543 48899999
Q ss_pred CCCCCC---CCCCCccEEEEcCCCch----HHHHHHhcccCCcEEEEEEC
Q 022070 221 DGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 221 D~~~~~---~~~~~fD~Iv~~~~~~~----v~~~~~~~LkpGG~lii~v~ 263 (303)
|..+.. ...++||+|+++...++ +++++.+.|||||++++.+.
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 986521 11257999998765432 36788999999999999544
No 42
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.50 E-value=1.6e-13 Score=122.61 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=91.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. ...++++|||||||+|+.+..++..+++.++|+++|+++++++.|++++++.++. ++++++.+|+.
T Consensus 57 g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~~~gda~ 130 (234)
T PLN02781 57 GLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINFIQSDAL 130 (234)
T ss_pred HHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEccHH
Confidence 44444443 2456789999999999999999998777789999999999999999999998875 68999999997
Q ss_pred CCCCC------CCCccEEEEcCCC---chHHHHHHhcccCCcEEEE
Q 022070 224 KGWPE------FAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~------~~~fD~Iv~~~~~---~~v~~~~~~~LkpGG~lii 260 (303)
+.++. .++||+|++++.. .++++.+.+.|+|||++++
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 64321 3689999999754 4556788999999999885
No 43
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=4.7e-13 Score=124.23 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=100.0
Q ss_pred CCCcccCCCCcChHHHHHHHHHHHHccCC--CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 127 SPMAIGYNATISAPHMHATCLQLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 127 ~~~~~~~g~~i~~p~~~~~~l~~l~~~l~--~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
..+.++.+..++.|.+...+...+...++ +..+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+..+
T Consensus 102 ~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~ 180 (307)
T PRK11805 102 LEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERH 180 (307)
T ss_pred cEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 34555666777777665555444432122 23689999999999999999985 5589999999999999999999987
Q ss_pred ccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC-------------------------------chHHHHHHhccc
Q 022070 205 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQLK 253 (303)
Q Consensus 205 ~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~-------------------------------~~v~~~~~~~Lk 253 (303)
++. ++++++.+|..+..+. ++||+|+++.+. ..+++.+.+.|+
T Consensus 181 ~l~-----~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~ 254 (307)
T PRK11805 181 GLE-----DRVTLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT 254 (307)
T ss_pred CCC-----CcEEEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC
Confidence 653 4799999998765543 589999998532 123466778999
Q ss_pred CCcEEEEEECCC
Q 022070 254 PGGRMVIPVGNI 265 (303)
Q Consensus 254 pGG~lii~v~~~ 265 (303)
|||++++.++..
T Consensus 255 pgG~l~~E~g~~ 266 (307)
T PRK11805 255 EDGVLVVEVGNS 266 (307)
T ss_pred CCCEEEEEECcC
Confidence 999999988865
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=122.60 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=85.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. +.++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. .++.++.+|+.
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~~ 86 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------PDCQFVEADIA 86 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECchh
Confidence 34455444 5778899999999999999999986 4579999999999999998763 36788999987
Q ss_pred CCCCCCCCccEEEEcCCCch------HHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~------v~~~~~~~LkpGG~lii~v~~ 264 (303)
+..+ ..+||+|+++..+++ +++.+.+.|||||.+++.++.
T Consensus 87 ~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 87 SWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred ccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 5433 368999999988754 457889999999999997643
No 45
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=2.7e-13 Score=123.19 Aligned_cols=108 Identities=22% Similarity=0.204 Sum_probs=86.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 143 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 143 ~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
...++..+. ++++.+|||||||+|..+..+++..+ ++|+++|+++.+++.|++++... +++.+..+|+
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~~--------~~i~~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSDK--------NKIEFEANDI 108 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCcC--------CceEEEECCc
Confidence 345555554 78899999999999999999988754 79999999999999999876431 4799999998
Q ss_pred CCCCCCCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEEEE
Q 022070 223 RKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 223 ~~~~~~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v 262 (303)
.+.....++||+|++...+ ..+++++.+.|||||++++.-
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 7643344789999986543 235678899999999999853
No 46
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=122.71 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~fD 233 (303)
.++.+|||+|||+|..+..+++. + .+|+++|+|+++++.|++++...++. .+++++++|..+.. ...+.||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g--~~v~~vD~s~~~l~~a~~~~~~~g~~-----~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G--HQVILCDLSAEMIQRAKQAAEAKGVS-----DNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcCCc-----cceEEEEcCHHHHhhhcCCCCC
Confidence 45679999999999999999987 3 79999999999999999999887653 57899999986642 1237899
Q ss_pred EEEEcCCCchH------HHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~~~v------~~~~~~~LkpGG~lii~v~~ 264 (303)
+|++..+++++ ++.+.+.|||||++++.+.+
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999876543 57889999999999986554
No 47
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.48 E-value=3.1e-13 Score=118.64 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=92.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDG 222 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~-~D~ 222 (303)
..++..+. .....++|||||++.||.+..+|..++.+++++++|+++++++.|++++++.++. +.|+++. +|.
T Consensus 48 g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-----~~i~~~~~gda 121 (219)
T COG4122 48 GALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-----DRIELLLGGDA 121 (219)
T ss_pred HHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----ceEEEEecCcH
Confidence 44444443 2567789999999999999999999876899999999999999999999999886 5688888 588
Q ss_pred CCCCCC--CCCccEEEEcCCCc---hHHHHHHhcccCCcEEEE
Q 022070 223 RKGWPE--FAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 223 ~~~~~~--~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii 260 (303)
.+.+.. .++||+||.++... ..++.+.++|+|||.+++
T Consensus 122 l~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 122 LDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 765543 48999999999764 556888999999999995
No 48
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.48 E-value=6.1e-13 Score=120.99 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=87.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+++|++|||+|||+|..+..+++.+++.+.|+++|+++.+++.+++++++.++ .+++++..|........+.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCC
Confidence 478999999999999999999999887668999999999999999999998775 47999999987643334679
Q ss_pred cEEEEcCCCc----------------------------hHHHHHHhcccCCcEEEEEEC
Q 022070 233 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 233 D~Iv~~~~~~----------------------------~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+|+++.++. .+++.+.+.|||||+++.+.-
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999987541 245677889999999998753
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=4.8e-13 Score=116.31 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=80.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ..++.+|||+|||+|..+..+|+. + .+|+|+|+|+.+++.++++....++ ++.+...|..
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 44555554 445679999999999999999987 3 6999999999999999998876543 3667777764
Q ss_pred CCCCCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii 260 (303)
... ..+.||+|++...+. .+++.+.+.|||||++++
T Consensus 88 ~~~-~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 88 AAA-LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred hcc-ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 422 236799999887653 345788899999999655
No 50
>PLN02476 O-methyltransferase
Probab=99.47 E-value=3.6e-13 Score=122.57 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=94.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+.. ..+.++||||||++|+.+..+|+.++++++|+++|.+++.++.|++++++.++. ++|+++.+|+.
T Consensus 107 g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~li~GdA~ 180 (278)
T PLN02476 107 AQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCHH
Confidence 444444432 556789999999999999999998877789999999999999999999998875 68999999987
Q ss_pred CCCCC------CCCccEEEEcCCCc---hHHHHHHhcccCCcEEEEEECCCc
Q 022070 224 KGWPE------FAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 224 ~~~~~------~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~v~~~~ 266 (303)
+.++. .++||+||+++... ..++.+.++|+|||.+++ .|..
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~--DNvL 230 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM--DNVL 230 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE--ecCc
Confidence 65432 26899999999864 446788899999999885 4443
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.47 E-value=1.2e-13 Score=109.35 Aligned_cols=100 Identities=27% Similarity=0.309 Sum_probs=82.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCccE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 234 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~~fD~ 234 (303)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.|++++...++. ++++++.+|..+.. ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD-----DRVEVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT-----TTEEEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC-----ceEEEEECchhhchhhccCceeEE
Confidence 5689999999999999999985 489999999999999999999987654 58999999987643 23489999
Q ss_pred EEEcCCCc--------------hHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAAP--------------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~~--------------~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+++.++. .+++.+.+.|||||.+++.++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998763 235788899999999998765
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=4.7e-13 Score=114.58 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++..++. ++++..+|..+.. .++||
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~d~~~~~--~~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-------GLDVVMTDLFKGV--RGKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEccccccc--CCccc
Confidence 4556799999999999999999874 3899999999999999999987542 6888999987643 25899
Q ss_pred EEEEcCCC---------------------------chHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAA---------------------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~---------------------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
.|+++.++ +.+++.+.+.|||||++++....
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 99998654 22456778999999999986544
No 53
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.46 E-value=4.5e-13 Score=130.44 Aligned_cols=141 Identities=20% Similarity=0.298 Sum_probs=109.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. +.++.+|||+|||+|.++..+|+.. .+|+|+|+|+++++.|++|+..+++ ++++++.+|+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~ 355 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLE 355 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChH
Confidence 34444443 5678899999999999999999885 6999999999999999999988765 47999999987
Q ss_pred CCCC----CCCCccEEEEcCCCc---hHHHHHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeecc
Q 022070 224 KGWP----EFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLT 294 (303)
Q Consensus 224 ~~~~----~~~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~ 294 (303)
+... ..+.||+|+++.+.. ++.+.+.+ ++|++.++++++... .++..+. ++.|..+.+.+++++|-|
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~---~~gY~l~~i~~~DmFP~T 431 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV---EAGYRLKRAGMLDMFPHT 431 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh---hCCcEEEEEEEeccCCCC
Confidence 5432 125799999997653 44444444 699999999998753 2333332 344999999999999999
Q ss_pred ccchh
Q 022070 295 SRDAQ 299 (303)
Q Consensus 295 ~~~~~ 299 (303)
.+.|-
T Consensus 432 ~HvE~ 436 (443)
T PRK13168 432 GHVES 436 (443)
T ss_pred CcEEE
Confidence 98874
No 54
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.45 E-value=1.5e-12 Score=119.58 Aligned_cols=133 Identities=21% Similarity=0.301 Sum_probs=98.4
Q ss_pred CCCCcccCCCCcChHHHHHHHHHHHHcc--CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 126 DSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 126 d~~~~~~~g~~i~~p~~~~~~l~~l~~~--l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
+..+.++.+..+++|.+...+-..+... ..++.+|||+|||+|.++..++... ++.+|+++|+|+.+++.|++|+..
T Consensus 82 g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~ 160 (284)
T TIGR00536 82 GLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEK 160 (284)
T ss_pred CeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3445556666666666544443333211 1233699999999999999999985 557999999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC-------------------------------chHHHHHHhcc
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 252 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~-------------------------------~~v~~~~~~~L 252 (303)
+++. ++++++.+|..+..+. .+||+|+++.+. ..+.+.+.+.|
T Consensus 161 ~~~~-----~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 161 NQLE-----HRVEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred cCCC-----CcEEEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 7653 3599999998775433 479999998532 12345667899
Q ss_pred cCCcEEEEEECCC
Q 022070 253 KPGGRMVIPVGNI 265 (303)
Q Consensus 253 kpGG~lii~v~~~ 265 (303)
+|||++++.++..
T Consensus 235 ~~gG~l~~e~g~~ 247 (284)
T TIGR00536 235 KPNGFLVCEIGNW 247 (284)
T ss_pred cCCCEEEEEECcc
Confidence 9999999999865
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=114.79 Aligned_cols=101 Identities=26% Similarity=0.393 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
++++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++...+. +++++.+|..+..+ .+.||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~d~~~~~~-~~~fD 103 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV-------DVDVRRGDWARAVE-FRPFD 103 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEECchhhhcc-CCCee
Confidence 678889999999999999999986 32 5999999999999999999887643 57888899876443 37899
Q ss_pred EEEEcCCC---------------------------chHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAA---------------------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~---------------------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+|+++.++ +.+++.+.+.|||||++++....
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99998542 12456778999999999986554
No 56
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=3.3e-13 Score=115.70 Aligned_cols=97 Identities=23% Similarity=0.344 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
..-.++||+|||.|.++..||.++ .+++++|+++..++.|++++... .+|++.+.|..+.++. +.||+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~~~P~-~~FDL 109 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPEFWPE-GRFDL 109 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEE
T ss_pred cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCCCCCC-CCeeE
Confidence 344689999999999999999997 79999999999999999998764 5899999999887766 89999
Q ss_pred EEEcCCCc---------hHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAAP---------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~~---------~v~~~~~~~LkpGG~lii~v~ 263 (303)
|++..++- .+.+.+.+.|+|||.+|+...
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99987652 234677889999999998553
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.44 E-value=6.1e-13 Score=116.29 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCCC--CCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW--PEFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~-~~~~--~~~~~ 231 (303)
+++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|++++...+. .++.++.+|+ .... ...+.
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccc
Confidence 467899999999999999999885 557999999999999999999887654 4899999998 3321 22378
Q ss_pred ccEEEEcCCC--------------chHHHHHHhcccCCcEEEEEECCC
Q 022070 232 YDAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 232 fD~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
||.|+++... +.+++.+.+.|||||.+++...+.
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 9999986432 346789999999999999977653
No 58
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.44 E-value=2.2e-12 Score=122.93 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=100.5
Q ss_pred CCcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 022070 123 PYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 202 (303)
Q Consensus 123 ~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~ 202 (303)
.+.+..+.++.+..+++|.+...+-..+. .++++.+|||+|||+|.++..+++.. +..+|+++|+|+++++.|++|+.
T Consensus 219 ~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 219 EFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred eecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 34455566677777777776544444343 35667799999999999999999874 55899999999999999999998
Q ss_pred HhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEEEcCCC-------------------------------chHHHHHHh
Q 022070 203 KSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAA-------------------------------PEIPQALID 250 (303)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~fD~Iv~~~~~-------------------------------~~v~~~~~~ 250 (303)
..+ .+++++.+|..+.. +..++||+|+++.+. ..+.+.+.+
T Consensus 297 ~~g-------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~ 369 (423)
T PRK14966 297 DLG-------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD 369 (423)
T ss_pred HcC-------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH
Confidence 764 27899999986532 223689999998754 012344567
Q ss_pred cccCCcEEEEEECCC
Q 022070 251 QLKPGGRMVIPVGNI 265 (303)
Q Consensus 251 ~LkpGG~lii~v~~~ 265 (303)
.|+|||.+++.++..
T Consensus 370 ~LkpgG~lilEiG~~ 384 (423)
T PRK14966 370 RLAEGGFLLLEHGFD 384 (423)
T ss_pred hcCCCcEEEEEECcc
Confidence 899999999988764
No 59
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.44 E-value=2.4e-12 Score=115.16 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g-~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
+.++.+|||+|||+|..+..+++.+. ++++++|+|+|+++++.|++++...+.. .+++++.+|+.+... ..+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCNDIRHVEI--KNA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCCC--CCC
Confidence 46788999999999999999998752 4589999999999999999998765432 478999999977532 468
Q ss_pred cEEEEcCCCch--------HHHHHHhcccCCcEEEEEE
Q 022070 233 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 233 D~Iv~~~~~~~--------v~~~~~~~LkpGG~lii~v 262 (303)
|+|++...+++ +++++.+.|||||.+++.-
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99988876543 4578899999999999863
No 60
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=123.30 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=89.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ...+.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|+++++.++.. ...++++..+|..
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l 291 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNAL 291 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEcccc
Confidence 34555554 2334699999999999999999985 6689999999999999999999876531 1137899999987
Q ss_pred CCCCCCCCccEEEEcCCCc-----------hHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~-----------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
...+. ++||+|+++.++. .+++.+.+.|+|||.+++..+.
T Consensus 292 ~~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 292 SGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred ccCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 65433 5899999998763 3457788999999999997543
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=2.4e-12 Score=115.42 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...++ .+++++.+|..+..+ .++||+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~fD~ 157 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPLP-GGKFDL 157 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccCc-CCceeE
Confidence 345699999999999999999985 457999999999999999999988665 479999999877543 378999
Q ss_pred EEEcCCCc--------------------------------hHHHHHHhcccCCcEEEEEECC
Q 022070 235 IHVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 235 Iv~~~~~~--------------------------------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+++.++. .+++.+.+.|+|||.+++.++.
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 99976431 2346778899999999998764
No 62
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=1.1e-12 Score=127.18 Aligned_cols=106 Identities=21% Similarity=0.287 Sum_probs=88.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~ 231 (303)
.+++|.+|||+|||+|+.|.++++.+++.++|+++|+++.+++.+++++++.++ .++++..+|+.+.. ...+.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDT 307 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhcc
Confidence 378899999999999999999999987678999999999999999999998775 47899999987632 12368
Q ss_pred ccEEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEECC
Q 022070 232 YDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 232 fD~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
||+|+++.++ ..+++.+.+.|||||+++++.-.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999998766 12245678899999999986643
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.44 E-value=2.4e-13 Score=117.27 Aligned_cols=99 Identities=23% Similarity=0.408 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+.+..+|.|+|||+|..|..+++++ |.+.++|+|-|++|++.|++++ .+++|..+|.++ |.+..++|
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~-w~p~~~~d 94 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRT-WKPEQPTD 94 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhh-cCCCCccc
Confidence 4566799999999999999999998 6699999999999999997764 588999999877 44447899
Q ss_pred EEEEcCCCchH------HHHHHhcccCCcEEEEEECCC
Q 022070 234 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 234 ~Iv~~~~~~~v------~~~~~~~LkpGG~lii~v~~~ 265 (303)
+|+++++++++ +..+..+|.|||.+.+.++++
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 99999998654 567889999999999988765
No 64
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.44 E-value=7.8e-13 Score=116.86 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=82.0
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
++|||||||+|..+..+++.+ +..+|+|+|+|+++++.|++++...++. +++++..+|+.+... .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~-----~~i~~~~~d~~~~~~-~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ-----GRIRIFYRDSAKDPF-PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEecccccCCC-CCCCCEeeh
Confidence 379999999999999999986 4479999999999999999999887654 578999999865432 368999998
Q ss_pred cCCCc------hHHHHHHhcccCCcEEEEEE
Q 022070 238 GAAAP------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 238 ~~~~~------~v~~~~~~~LkpGG~lii~v 262 (303)
..+++ .+++.+.+.|||||++++..
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 77664 34678999999999999854
No 65
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.43 E-value=3.1e-13 Score=118.24 Aligned_cols=111 Identities=25% Similarity=0.365 Sum_probs=90.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
+.++..+.. .....+||||||++||.+.++|+.++++++|+++|++++..+.|++++++.++. ++|+++.+|+.
T Consensus 34 g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-----~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-----DRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-----GGEEEEES-HH
T ss_pred HHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-----CcEEEEEeccH
Confidence 445555542 334579999999999999999999877899999999999999999999998875 68999999987
Q ss_pred CCCCC------CCCccEEEEcCCCchH---HHHHHhcccCCcEEEE
Q 022070 224 KGWPE------FAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~------~~~fD~Iv~~~~~~~v---~~~~~~~LkpGG~lii 260 (303)
+.++. .++||+||+++..... ++.+.++|+|||.+++
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEE
Confidence 53321 2589999999987654 4677899999999995
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=1.4e-12 Score=127.98 Aligned_cols=108 Identities=23% Similarity=0.318 Sum_probs=87.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ++++.+|||||||+|..+..+++..+ .+|+|+|+|+++++.|+++..... .++++..+|..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~-------~~v~~~~~d~~ 324 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK-------CSVEFEVADCT 324 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC-------CceEEEEcCcc
Confidence 34455544 57788999999999999999998764 799999999999999998765321 47899999987
Q ss_pred CCCCCCCCccEEEEcCCCch------HHHHHHhcccCCcEEEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~------v~~~~~~~LkpGG~lii~v 262 (303)
+...+.++||+|++..++.+ +++++.+.|||||++++..
T Consensus 325 ~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 325 KKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 65434478999999887754 4678999999999999854
No 67
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=1.5e-12 Score=126.43 Aligned_cols=103 Identities=25% Similarity=0.328 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~ 229 (303)
+++|++|||+|||+|+.+.++++..++.++|+++|+++.+++.+++++.+.++ .+|+++.+|..+.. ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 78899999999999999999999887668999999999999999999999876 47999999987643 123
Q ss_pred CCccEEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEE
Q 022070 230 APYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 230 ~~fD~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v 262 (303)
+.||+|+++.++ ..+++++.+.|||||+++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999998654 133567889999999999764
No 68
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=1.9e-12 Score=126.09 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+.+|++|||+|||+|+.+.++++.++..++|+++|+++.+++.+++++++.++ .+|+++.+|+.+..+ .+.||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccccc-CCCCC
Confidence 67899999999999999999999876667999999999999999999998775 479999999877543 36899
Q ss_pred EEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEEC
Q 022070 234 AIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 234 ~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
+|+++.++ ..+++.+.+.|||||++++..-
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99987543 1245678889999999999763
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.42 E-value=2.3e-12 Score=127.18 Aligned_cols=137 Identities=12% Similarity=0.192 Sum_probs=103.2
Q ss_pred CCCcCCCCcccCCCCcChHHHHHHHHHHHHcc-------------------------CCCCCEEEEEcCCccHHHHHHHH
Q 022070 122 PPYVDSPMAIGYNATISAPHMHATCLQLLEEN-------------------------LKPGMHALDIGSGTGYLTACFAL 176 (303)
Q Consensus 122 ~~y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~-------------------------l~~g~~VLDIGcG~G~~t~~lA~ 176 (303)
..+.+..+.++.+..|++|.+...+-..+... ..++.+|||+|||+|.++..++.
T Consensus 79 ~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHH
Confidence 34456677788889999998765554333211 11346899999999999999998
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC---------------
Q 022070 177 MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------- 241 (303)
Q Consensus 177 ~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------------- 241 (303)
.. +..+|+++|+|+.+++.|++|+..+++. ++++++.+|..+..+ .++||+|+++.+.
T Consensus 159 ~~-p~~~v~avDis~~al~~A~~N~~~~~l~-----~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 159 EL-PNANVIATDISLDAIEVAKSNAIKYEVT-----DRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HC-CCCeEEEEECCHHHHHHHHHHHHHcCCc-----cceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhhc
Confidence 86 4589999999999999999999887654 478999999876443 2689999997643
Q ss_pred -----------------chHHHHHHhcccCCcEEEEEECCC
Q 022070 242 -----------------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 242 -----------------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
..+.+.+.+.|+|||.+++.++..
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 012345667999999999988653
No 70
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=3.5e-12 Score=112.70 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=87.5
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.++..+. +.++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++.... ..++++..+|..+
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~ 80 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEeccccc
Confidence 3445444 788899999999999999999998766689999999999999998873321 1478999998765
Q ss_pred CCCCCCCccEEEEcCCCc------hHHHHHHhcccCCcEEEEEEC
Q 022070 225 GWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~ 263 (303)
.....+.||+|++...++ .+++++.+.|||||.+++...
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 433347899999987664 356889999999999997543
No 71
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.42 E-value=1.7e-12 Score=120.92 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=103.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD~ 234 (303)
++.+|||+|||+|.++..+|+.. .+|+|+|+++.+++.|+++++.+++ ++++++.+|+.+... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeE
Confidence 56899999999999999999863 6999999999999999999988765 489999999876432 2257999
Q ss_pred EEEcCCCchHHH---HHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeeccccchh
Q 022070 235 IHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 299 (303)
Q Consensus 235 Iv~~~~~~~v~~---~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~~ 299 (303)
|+++.+...+.+ .....++|+++++++++... .++..+ +.|+.+.+.++.++|.|.+.|-
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmFP~T~HvE~ 308 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMFPHTAHYEV 308 (315)
T ss_pred EEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccCCCCCeEEE
Confidence 999976543322 33444788999999998753 233333 3599999999999999998874
No 72
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=2e-12 Score=116.41 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=81.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ..++.+|||+|||+|.++..+++. + .+|+++|+|+++++.|+++.. ...++.+|..
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~~ 95 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER-G--SQVTALDLSPPMLAQARQKDA-----------ADHYLAGDIE 95 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCcc
Confidence 44445443 345679999999999999999876 3 799999999999999987632 3457788886
Q ss_pred CCCCCCCCccEEEEcCCCc------hHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+.....+.||+|+++..+. .+++++.+.|||||.+++....
T Consensus 96 ~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 96 SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred cCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6443447899999987654 3568899999999999987543
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.40 E-value=1.8e-12 Score=112.63 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCCCc
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 232 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~f 232 (303)
...+|||||||+|.++..+|+.. ++..|+|+|+++.+++.|++++...++ .|++++.+|+.+.. ...+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCce
Confidence 45699999999999999999985 668999999999999999999888665 48999999986532 233689
Q ss_pred cEEEEcCCC--------------chHHHHHHhcccCCcEEEEEECCC
Q 022070 233 DAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 233 D~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
|.|+++.+. +.+++.+.+.|||||.+++...+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 999988543 246788999999999999977654
No 74
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=5e-12 Score=115.81 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 155 KPGMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~-t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+.++|+|||||.|.+ +..++....++++++++|+++++++.|++.+.. .++. ++++|..+|+.+.....+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-----~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-----KRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-----CCcEEEECchhhcccccCCc
Confidence 3678999999998654 555555556778999999999999999999854 5554 57999999998754445789
Q ss_pred cEEEEcCC-------CchHHHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAA-------APEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~-------~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+|++... ...+++.+.+.|+|||.+++-.+.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 99999842 135678999999999999986543
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.1e-12 Score=115.61 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=90.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ...+.+|||+|||.|.+++.+|+.. |..+++.+|+|..+++.|++|+..+++. +..+...|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~------~~~v~~s~~~ 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVE------NTEVWASNLY 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCC------ccEEEEeccc
Confidence 45666665 4445599999999999999999996 6799999999999999999999998763 4467778877
Q ss_pred CCCCCCCCccEEEEcCCCc-----------hHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~-----------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+... ++||.|+++.+++ .+++.+.+.|++||.|.+-...
T Consensus 219 ~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 219 EPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred cccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC
Confidence 6544 4999999999873 4567888999999999996553
No 76
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=5.4e-13 Score=103.40 Aligned_cols=90 Identities=24% Similarity=0.414 Sum_probs=70.0
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 160 ALDIGSGTGYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 160 VLDIGcG~G~~t~~lA~~~--g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
|||+|||+|..+..+++.+ +++.+++++|+|+++++.++++....+. +++++++|+.+.....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------KVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------ceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999986 3447999999999999999999877432 789999999874444579999999
Q ss_pred cCC-Cc--------hHHHHHHhcccCCc
Q 022070 238 GAA-AP--------EIPQALIDQLKPGG 256 (303)
Q Consensus 238 ~~~-~~--------~v~~~~~~~LkpGG 256 (303)
... +. .+++++.+.|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 544 43 34578889999998
No 77
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=1.7e-12 Score=115.69 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=91.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
+.++..... +....+|||+|||+|..+..+|++.. .+++++||+++++++.|+++++.+++. ++++++++|..
T Consensus 33 aiLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~-----~ri~v~~~Di~ 105 (248)
T COG4123 33 AILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLE-----ERIQVIEADIK 105 (248)
T ss_pred HHHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcch-----hceeEehhhHH
Confidence 445554432 44477999999999999999999964 489999999999999999999998776 79999999987
Q ss_pred CCCCC--CCCccEEEEcCCC------------------------chHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPE--FAPYDAIHVGAAA------------------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~--~~~fD~Iv~~~~~------------------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+.... ..+||+|+|+.++ +.+.+.+.++|||||.+.+..+.
T Consensus 106 ~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 106 EFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred HhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 75432 2579999999875 22345677899999999986543
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.39 E-value=5.3e-12 Score=118.76 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. .....+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|+++++.+++ ..+++.+|..
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 34555554 2334589999999999999999985 557999999999999999999988754 3466777776
Q ss_pred CCCCCCCCccEEEEcCCCc-----------hHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~-----------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
... .++||+|+++.+++ .+++.+.+.|||||.+++..+.
T Consensus 256 ~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 256 SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 533 37899999998763 3457788999999999985544
No 79
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=4.1e-12 Score=123.73 Aligned_cols=103 Identities=23% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~f 232 (303)
++++++|||+|||+|..+..+++..++.++|+++|+++.+++.+++++.+.++ .+++++.+|+.+.... .+.|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 67889999999999999999999876668999999999999999999998776 3699999998764321 2689
Q ss_pred cEEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEE
Q 022070 233 DAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 233 D~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v 262 (303)
|+|++++++ ..+++.+.+.|||||+++.+.
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999998753 124567788999999999754
No 80
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.7e-12 Score=115.49 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=96.4
Q ss_pred CCCCcccCCCCcChHHHHHHHHHHHHccCCCCC-EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 126 DSPMAIGYNATISAPHMHATCLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 126 d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~-~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
.-.+....+..+++|.+...+-..+. ...... +|||+|||||..+..+|+.. +..+|+|+|+|+.+++.|++|+..+
T Consensus 80 gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~ 157 (280)
T COG2890 80 GLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERN 157 (280)
T ss_pred ceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHc
Confidence 33444556677777776544433221 122222 79999999999999999995 5579999999999999999999998
Q ss_pred ccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC-------------------------------chHHHHHHhccc
Q 022070 205 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQLK 253 (303)
Q Consensus 205 ~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~-------------------------------~~v~~~~~~~Lk 253 (303)
++ .++.++.+|..+... ++||+|++|.+. ..+.+.+.+.|+
T Consensus 158 ~l------~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 158 GL------VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred CC------ccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 75 367777778777554 599999999764 111245668899
Q ss_pred CCcEEEEEECC
Q 022070 254 PGGRMVIPVGN 264 (303)
Q Consensus 254 pGG~lii~v~~ 264 (303)
|||.+++.++.
T Consensus 230 ~~g~l~le~g~ 240 (280)
T COG2890 230 PGGVLILEIGL 240 (280)
T ss_pred CCcEEEEEECC
Confidence 99999999984
No 81
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.38 E-value=2.4e-12 Score=115.61 Aligned_cols=116 Identities=23% Similarity=0.296 Sum_probs=93.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+.. ..+.++|||||++.|+.+.++|...+++++++++|++++..+.|++++++.++. ++|+++.+|+.
T Consensus 68 g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I~~~~G~a~ 141 (247)
T PLN02589 68 GQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeccHH
Confidence 444444432 344579999999999999999998877899999999999999999999998875 79999999987
Q ss_pred CCCCC-------CCCccEEEEcCCCch---HHHHHHhcccCCcEEEEEECCCce
Q 022070 224 KGWPE-------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGNIFQ 267 (303)
Q Consensus 224 ~~~~~-------~~~fD~Iv~~~~~~~---v~~~~~~~LkpGG~lii~v~~~~~ 267 (303)
+.++. .++||+||+++.... .++.+.++|+|||.+++ .|..+
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~--DNvl~ 193 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY--DNTLW 193 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE--cCCCC
Confidence 75432 268999999998654 45677899999999884 55543
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=5.8e-12 Score=115.90 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=77.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
+.+|||+|||+|..+..+++. | .+|+|+|+|+.+++.++++....++ ++++...|...... .+.||+|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcccc-cCCccEEE
Confidence 459999999999999999987 4 7999999999999999998877543 67888888765332 47899999
Q ss_pred EcCCCc--------hHHHHHHhcccCCcEEEEE
Q 022070 237 VGAAAP--------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 237 ~~~~~~--------~v~~~~~~~LkpGG~lii~ 261 (303)
+...+. .+++++.+.|+|||++++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 987653 3467888999999997663
No 83
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.38 E-value=4.4e-12 Score=109.44 Aligned_cols=104 Identities=25% Similarity=0.259 Sum_probs=78.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. .++ ..++||+|||.|..+.+||++ | -.|+++|+|+..++.+++...+.++ +|+....|..
T Consensus 20 s~v~~a~~-~~~-~g~~LDlgcG~GRNalyLA~~-G--~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP-LLK-PGKALDLGCGEGRNALYLASQ-G--FDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT-TS--SSEEEEES-TTSHHHHHHHHT-T---EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh-hcC-CCcEEEcCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 33455554 344 459999999999999999998 4 7999999999999999887777654 5888999986
Q ss_pred CCCCCCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii 260 (303)
+...+ +.||+|++..++ +.+++.+.+.++|||++++
T Consensus 88 ~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 88 DFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp CBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 64433 789999987665 2356778889999999887
No 84
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.38 E-value=7e-12 Score=114.44 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~--~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+..+|||+|||+|+++..+++.++.. ..++|+|+|+.+++.|+++. .++.+..+|..+.....++|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCce
Confidence 355789999999999999999876422 37999999999999997652 36788899987754445789
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEEEECCC
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
|+|++... +...+++.+.|||||++++..++.
T Consensus 153 D~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 153 DAIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eEEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 99998765 455788999999999999976653
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=9.6e-12 Score=113.20 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=93.2
Q ss_pred CCCcccCCCCcChHHHHHHHHHHHH-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022070 127 SPMAIGYNATISAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 205 (303)
Q Consensus 127 ~~~~~~~g~~i~~p~~~~~~l~~l~-~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~ 205 (303)
..+..+.+..++.|.+...+-..+. ....++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++. ..
T Consensus 78 ~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~ 155 (275)
T PRK09328 78 LDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HG 155 (275)
T ss_pred cEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hC
Confidence 3444455555555544322222221 124567899999999999999999986 55899999999999999999987 22
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC--------------------------------chHHHHHHhccc
Q 022070 206 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------------------------PEIPQALIDQLK 253 (303)
Q Consensus 206 ~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------------------------------~~v~~~~~~~Lk 253 (303)
.. .++.++.+|..+... .++||+|+++.+. ..+.+.+.+.|+
T Consensus 156 ~~-----~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk 229 (275)
T PRK09328 156 LG-----ARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK 229 (275)
T ss_pred CC-----CcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc
Confidence 11 489999999866443 3689999997543 112345568999
Q ss_pred CCcEEEEEECC
Q 022070 254 PGGRMVIPVGN 264 (303)
Q Consensus 254 pGG~lii~v~~ 264 (303)
|||++++.++.
T Consensus 230 ~gG~l~~e~g~ 240 (275)
T PRK09328 230 PGGWLLLEIGY 240 (275)
T ss_pred cCCEEEEEECc
Confidence 99999998865
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=8.3e-12 Score=117.03 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|.+...++.... ++++++|||+|||+|.++..++.. + .+++|+|+++.+++.|++|++..++. ++++..
T Consensus 168 ~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g~~------~i~~~~ 236 (329)
T TIGR01177 168 PKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYGIE------DFFVKR 236 (329)
T ss_pred HHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhCCC------CCeEEe
Confidence 445555555443 788999999999999999887765 4 79999999999999999999987763 588999
Q ss_pred cCCCCCCCCCCCccEEEEcCCC---------------chHHHHHHhcccCCcEEEEEECCC
Q 022070 220 GDGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 220 ~D~~~~~~~~~~fD~Iv~~~~~---------------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+|+.+.....+.||.|+++.++ ..+++.+.+.|||||++++.+++.
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 9998754334789999998643 234567889999999999888764
No 87
>PTZ00146 fibrillarin; Provisional
Probab=99.37 E-value=7.1e-12 Score=114.41 Aligned_cols=103 Identities=23% Similarity=0.312 Sum_probs=80.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEF 229 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~ 229 (303)
.++++++|||+|||+|+++.++|+.+++.++|+++|+++.+.+...+..... .||.++.+|+.... ...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCccChhhhhccc
Confidence 3789999999999999999999999988889999999987665544443321 48889999986532 122
Q ss_pred CCccEEEEcCCCch----HHHHHHhcccCCcEEEEEEC
Q 022070 230 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~----v~~~~~~~LkpGG~lii~v~ 263 (303)
+.||+|+++...++ +..++.+.|||||.+++.+.
T Consensus 201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 57999999986543 34577889999999999543
No 88
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.37 E-value=6.9e-13 Score=117.62 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+-.|++|||+|||.|.++..||+.. +.|+|||+++.+++.|++..........-...++++...|+.. ..+.||
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~---~~~~fD 160 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG---LTGKFD 160 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh---cccccc
Confidence 3447899999999999999999984 8999999999999999998433222100000134555555543 226799
Q ss_pred EEEEcCCCchH--H----HHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAAPEI--P----QALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~~~v--~----~~~~~~LkpGG~lii~v~~ 264 (303)
.|+|..+++|+ + +.+.+.|||||++++..-+
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99999999888 3 4577899999999997654
No 89
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=6.3e-12 Score=117.48 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.+|.+|||||||+|+++..++.. ++ ..|+|+|.|+.++..++......+.. .++.++.+|+.+... .+.||+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~-----~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGND-----QRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCC-----CCeEEEeCCHHHCCC-cCCcCE
Confidence 46789999999999999999988 44 47999999999887654432221111 479999999876543 578999
Q ss_pred EEEcCCCch------HHHHHHhcccCCcEEEEE
Q 022070 235 IHVGAAAPE------IPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 235 Iv~~~~~~~------v~~~~~~~LkpGG~lii~ 261 (303)
|++.+++.| +++.+.+.|+|||.+++.
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999887644 467899999999999985
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.37 E-value=1.3e-11 Score=109.49 Aligned_cols=111 Identities=25% Similarity=0.428 Sum_probs=87.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. ..++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++...+.. .++.+..+|..
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~ 113 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-----GNVEFVQGDAE 113 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-----cCeEEEecccc
Confidence 34445444 457789999999999999999998743689999999999999999988664332 47899999987
Q ss_pred CCCCCCCCccEEEEcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
+.....+.||+|++...+ ..+++.+.+.|+|||.+++.
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 754444789999987654 34567889999999999874
No 91
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=8.8e-12 Score=110.33 Aligned_cols=110 Identities=26% Similarity=0.327 Sum_probs=85.4
Q ss_pred HHHHHHHHHccC-CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022070 143 HATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 221 (303)
Q Consensus 143 ~~~~l~~l~~~l-~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D 221 (303)
...+++.+.... ..+.+|||+|||+|.++..+++.+ +..+++++|+++++++.++++.. .++.++.+|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d 88 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------ENVQFICGD 88 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecc
Confidence 344455554221 344699999999999999999985 66789999999999999887643 267888999
Q ss_pred CCCCCCCCCCccEEEEcCCCc------hHHHHHHhcccCCcEEEEEEC
Q 022070 222 GRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 222 ~~~~~~~~~~fD~Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~ 263 (303)
..+.....++||+|++...++ .+++.+.+.|||||++++...
T Consensus 89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 877544457899999987664 456788999999999998654
No 92
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=1.1e-11 Score=120.25 Aligned_cols=102 Identities=26% Similarity=0.340 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~ 231 (303)
+++|++|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++.+.++ +++++.+|+.+... ..++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCC
Confidence 78899999999999999999999863 37999999999999999999988764 46889999876321 2367
Q ss_pred ccEEEEcCCCc----------------------------hHHHHHHhcccCCcEEEEEEC
Q 022070 232 YDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 232 fD~Iv~~~~~~----------------------------~v~~~~~~~LkpGG~lii~v~ 263 (303)
||.|+++.++. .+++.+.+.|||||+++++.-
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99999887542 245677889999999998663
No 93
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.35 E-value=9e-12 Score=120.73 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=85.3
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.+...+. +++|++|||+|||+|+.+.++++..+ +++|+++|+++.+++.+++++++.++. ..+.+..+|...
T Consensus 229 ~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~~ 300 (426)
T TIGR00563 229 WVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGRG 300 (426)
T ss_pred HHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEecccccc
Confidence 3444454 78899999999999999999999875 689999999999999999999987652 234446666654
Q ss_pred CCC--CCCCccEEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEEC
Q 022070 225 GWP--EFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 225 ~~~--~~~~fD~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
... ..+.||+|++++++ ..+++++.+.|||||+++++.-
T Consensus 301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 222 34689999987543 1245678889999999998653
No 94
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.35 E-value=2.1e-11 Score=110.17 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=90.2
Q ss_pred CCCCcccCCCCcChHHHHHHHHHHHHc--cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 126 DSPMAIGYNATISAPHMHATCLQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 126 d~~~~~~~g~~i~~p~~~~~~l~~l~~--~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
+..+.++.+..+..+.+...+-..+.. ...+..+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+..
T Consensus 54 g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 54 GLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred CeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 344555555555444433222222221 01234589999999999999999885 346999999999999999999877
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEEcCCCc--------------------------------hHHHHHH
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP--------------------------------EIPQALI 249 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv~~~~~~--------------------------------~v~~~~~ 249 (303)
+ +++++.+|..+..+. .+.||+|+++.++. .+.+.+.
T Consensus 133 ~---------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 133 A---------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred c---------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 4 347888888764331 25799999997541 2334566
Q ss_pred hcccCCcEEEEEECCC
Q 022070 250 DQLKPGGRMVIPVGNI 265 (303)
Q Consensus 250 ~~LkpGG~lii~v~~~ 265 (303)
+.|||||++++.++..
T Consensus 204 ~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 204 DWLAPGGHLLVETSER 219 (251)
T ss_pred HhcCCCCEEEEEECcc
Confidence 8999999999988753
No 95
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.34 E-value=1.2e-11 Score=114.94 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..+|++|||||||+|+++..++.. +. ..|+|+|.|+.++..++..-...+.. .++.+...+..+... ...||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~~-----~~v~~~~~~ie~lp~-~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDND-----KRAILEPLGIEQLHE-LYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhccC-----CCeEEEECCHHHCCC-CCCcC
Confidence 467889999999999999888877 43 58999999999987654322211111 367777777655433 36899
Q ss_pred EEEEcCCCch------HHHHHHhcccCCcEEEEEE
Q 022070 234 AIHVGAAAPE------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 234 ~Iv~~~~~~~------v~~~~~~~LkpGG~lii~v 262 (303)
+|++.+++.| +++++.+.|||||.|++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999988754 4578999999999999853
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=99.33 E-value=3.4e-11 Score=102.98 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=86.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. ..++.+|||+|||+|.++..++.. + .+++++|+++++++.+++++...+.. ..++.++.+|..
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~ 83 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLF 83 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccc
Confidence 33444444 467889999999999999999987 4 79999999999999999999876652 012888999987
Q ss_pred CCCCCCCCccEEEEcCCCc---------------------------hHHHHHHhcccCCcEEEEEECC
Q 022070 224 KGWPEFAPYDAIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~---------------------------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+.... ..||+|+++.++. .+++.+.+.|||||.+++.+..
T Consensus 84 ~~~~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 84 EPFRG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccccc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 75544 4899999876531 2457788999999999886654
No 97
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.33 E-value=3.1e-12 Score=124.13 Aligned_cols=132 Identities=22% Similarity=0.243 Sum_probs=103.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~ 229 (303)
+.++++|||+|||+|.++..+|+.. .+|+|+|+++.+++.|++|+..+++ ++++++.+|+.+.++ ..
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcC
Confidence 5677899999999999999999875 6899999999999999999988765 489999999865322 12
Q ss_pred CCccEEEEcCCC----chHHHHHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeeccccch
Q 022070 230 APYDAIHVGAAA----PEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 298 (303)
Q Consensus 230 ~~fD~Iv~~~~~----~~v~~~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~ 298 (303)
..||+|+.+.+- ..+.+.+. .++|++.++++++... .++..+. +..|..+.+.++.++|-|.+.|
T Consensus 361 ~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l~---~~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPATLARDLEFLC---KEGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred CCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHHH---HCCeeEEEEEEeccCCCCCCCC
Confidence 579999998764 34445444 4899999998887542 2333332 3349999999999999999865
No 98
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.33 E-value=1.6e-11 Score=108.41 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=91.2
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~-----~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
..+..+. +.++++|||++||||-++--+.+..+.. ++|+.+|++++|+..++++.++.++. ....+.++.
T Consensus 91 ~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~ 165 (296)
T KOG1540|consen 91 MFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVE 165 (296)
T ss_pred HhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEe
Confidence 3444444 6788999999999999999999987653 79999999999999999998776553 223489999
Q ss_pred cCCCCCCCCCCCccEEEEcCCCc------hHHHHHHhcccCCcEEEE
Q 022070 220 GDGRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 220 ~D~~~~~~~~~~fD~Iv~~~~~~------~v~~~~~~~LkpGG~lii 260 (303)
+|+.+...+...||...+...++ ..+++++|.|||||++.+
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 99988776778999998887664 456899999999999985
No 99
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.33 E-value=1.5e-11 Score=115.27 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.++.+|||||||+|..+..+++..+ ..+|+++|+|+++++.|+++... .+++++.+|..+.....+.||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeE
Confidence 4678999999999999999998863 37999999999999999987542 4788899998764434478999
Q ss_pred EEEcCCCc------hHHHHHHhcccCCcEEEEE
Q 022070 235 IHVGAAAP------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 235 Iv~~~~~~------~v~~~~~~~LkpGG~lii~ 261 (303)
|++...++ .+++++.+.|||||++++.
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99987664 3568899999999999874
No 100
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.33 E-value=6.9e-12 Score=119.56 Aligned_cols=130 Identities=18% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD 233 (303)
.++.+|||+|||+|.++..+|... .+|+|+|+++.+++.|++|++.+++ ++++++.+|+.+.... ...||
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D 302 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPE 302 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCC
Confidence 456799999999999999999763 6899999999999999999988765 4899999998654321 24699
Q ss_pred EEEEcCCCchH----HHHHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeeccccchh
Q 022070 234 AIHVGAAAPEI----PQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 299 (303)
Q Consensus 234 ~Iv~~~~~~~v----~~~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~~ 299 (303)
+|+++.+-..+ .+.+ ..++|++.++++++... .++..+ +.|..+.+.++.++|-|++.|-
T Consensus 303 ~vi~DPPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 303 LVLVNPPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred EEEECCCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccCCCCCcEEE
Confidence 99999876433 3334 35799999999998752 334444 2499999999999999999874
No 101
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=4.8e-13 Score=103.11 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=59.2
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEEc
Q 022070 161 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVG 238 (303)
Q Consensus 161 LDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv~~ 238 (303)
||||||+|.++..+++.+ +..+++++|+|+.+++.|++++..... .+......+..+.... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999996 558999999999999999998887643 2333333333332211 1599999999
Q ss_pred CCCchH------HHHHHhcccCCcEE
Q 022070 239 AAAPEI------PQALIDQLKPGGRM 258 (303)
Q Consensus 239 ~~~~~v------~~~~~~~LkpGG~l 258 (303)
.+++++ ++++.+.|||||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 888665 57888999999986
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1.6e-11 Score=111.60 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD 233 (303)
.++.+|||||||+|.++..+++.. +..+++++|+++++++.|++++...+. .++++++.+|+.+.... .++||
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCC
Confidence 456799999999999999999986 568999999999999999998754322 15899999998764332 25899
Q ss_pred EEEEcCCC----------chHHHHHHhcccCCcEEEEEEC
Q 022070 234 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 234 ~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
+|+++..- .++++.+.+.|+|||++++.+.
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 99987421 3567889999999999998654
No 103
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.29 E-value=3.7e-11 Score=113.93 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=90.9
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.+++.+. ...+..+||||||+|.++..+|+.. |+..++|+|+++.+++.|.+++...++ .|+.++.+|+..
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ 183 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARL 183 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHH
Confidence 4455554 4556799999999999999999996 678999999999999999999988765 589999999864
Q ss_pred C--CCCCCCccEEEEcCCCc------------hHHHHHHhcccCCcEEEEEECC
Q 022070 225 G--WPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 225 ~--~~~~~~fD~Iv~~~~~~------------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
. ....+.+|.|+++.+.+ .+++.+.+.|+|||.+.+....
T Consensus 184 ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 184 LLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3 12347899999987653 4678899999999999986654
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.28 E-value=2.1e-11 Score=107.12 Aligned_cols=94 Identities=23% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 226 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------- 226 (303)
++++.+|||+|||+|.++..+++..++.++|+++|+++. ... .+++++++|+.+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~------~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI------VGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC------CCcEEEecCCCChHHHHHHHH
Confidence 578899999999999999999999877689999999881 111 47899999988731
Q ss_pred -CCCCCccEEEEcCCC-----------------chHHHHHHhcccCCcEEEEEECC
Q 022070 227 -PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 227 -~~~~~fD~Iv~~~~~-----------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
...++||+|+++.+. +.+++.+.+.|||||.+++-+..
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 223789999998632 23457888999999999996544
No 105
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.28 E-value=5.9e-11 Score=104.04 Aligned_cols=107 Identities=24% Similarity=0.347 Sum_probs=84.1
Q ss_pred HHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 145 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 145 ~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.++..+. ..++.+|||+|||+|..+..+++.++...+++++|+++.+++.+++++. . . .++++..+|..+
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~------~~i~~~~~d~~~ 99 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-P------LNIEFIQADAEA 99 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-C------CCceEEecchhc
Confidence 3444443 4578899999999999999999987433699999999999999998875 1 1 478899999877
Q ss_pred CCCCCCCccEEEEcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
.....++||+|++...+ ..+++.+.+.|+|||++++.
T Consensus 100 ~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 100 LPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 54444789999887654 34568889999999999973
No 106
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.27 E-value=7e-11 Score=109.56 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=85.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. ++++.+|||||||+|..+..+++.+ |+.+++++|. +.+++.+++++.+.++. ++++++.+|..
T Consensus 139 ~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~rv~~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY 209 (306)
T ss_pred HHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc-----ceEEEEecCcc
Confidence 33444443 6778899999999999999999996 6689999997 78999999999887764 58999999987
Q ss_pred CCCCCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii~ 261 (303)
+... +.+|+|++...++ .+++++.+.|||||++++.
T Consensus 210 ~~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 210 KESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5322 3479987665432 3567889999999999874
No 107
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=4.4e-11 Score=119.12 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~~ 231 (303)
..++.+|||||||+|..+..+++.. ++.+|+|+|+|+.+++.|+++....+ .++.++.+|..+.. ...++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccCCCC
Confidence 3467899999999999999999885 56899999999999999998875533 36788889986632 23378
Q ss_pred ccEEEEcCCCc-------------------hHHHHHHhcccCCcEEEEEE
Q 022070 232 YDAIHVGAAAP-------------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 232 fD~Iv~~~~~~-------------------~v~~~~~~~LkpGG~lii~v 262 (303)
||+|+++..++ .+++++.+.|||||++++.-
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999875443 34577889999999999854
No 108
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.26 E-value=1.3e-10 Score=101.28 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 141 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 141 ~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
.+...++..+. ...++.+|||+|||+|.++..++... . .+|+++|+++..++.+++|++.++. .+++++.+
T Consensus 39 ~v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~ 109 (199)
T PRK10909 39 RVRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNT 109 (199)
T ss_pred HHHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEc
Confidence 33344555553 13467899999999999998654443 2 6999999999999999999998765 47999999
Q ss_pred CCCCCCC-CCCCccEEEEcCCC-chH----HHHHHh--cccCCcEEEEEECCC
Q 022070 221 DGRKGWP-EFAPYDAIHVGAAA-PEI----PQALID--QLKPGGRMVIPVGNI 265 (303)
Q Consensus 221 D~~~~~~-~~~~fD~Iv~~~~~-~~v----~~~~~~--~LkpGG~lii~v~~~ 265 (303)
|+.+.++ ..++||+|+++.++ ..+ ++.+.. +|+|++++++.+...
T Consensus 110 D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 110 NALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred hHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 9876442 22479999999995 233 333333 378999999987653
No 109
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.25 E-value=3e-11 Score=100.30 Aligned_cols=101 Identities=30% Similarity=0.389 Sum_probs=75.1
Q ss_pred HHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022070 146 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 225 (303)
Q Consensus 146 ~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 225 (303)
.+..+.....++.+|||||||.|.++..+++. + .+++++|+++.+++. . ++.....+..+.
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~----------~~~~~~~~~~~~ 72 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R----------NVVFDNFDAQDP 72 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T----------TSEEEEEECHTH
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h----------hhhhhhhhhhhh
Confidence 34444323577889999999999999999776 4 599999999999887 1 222222222232
Q ss_pred CCCCCCccEEEEcCCCchH------HHHHHhcccCCcEEEEEECCC
Q 022070 226 WPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v------~~~~~~~LkpGG~lii~v~~~ 265 (303)
....+.||+|++..+++++ ++.+.+.|||||++++.....
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 2244799999999988765 478899999999999988764
No 110
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.24 E-value=1.6e-10 Score=101.94 Aligned_cols=100 Identities=24% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCC---------ccCCCCEEEEEcCCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP---------LLKEGSLSVHVGDGRKG 225 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~---------~~~~~~v~~~~~D~~~~ 225 (303)
.++.+|||+|||.|..+.++|++ | .+|+|+|+|+.+++.+.+. .++.. .....+|++.++|..+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--HRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--CeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence 56779999999999999999987 4 7999999999999986432 11110 01124789999999875
Q ss_pred CCC-CCCccEEEEcCCCch--------HHHHHHhcccCCcEEEE
Q 022070 226 WPE-FAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~-~~~fD~Iv~~~~~~~--------v~~~~~~~LkpGG~lii 260 (303)
... .+.||.|+....+.+ ..+.+.++|||||++++
T Consensus 107 ~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 107 TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 432 367999987765433 45788999999997554
No 111
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=7.5e-11 Score=107.29 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHH----hcc----------------
Q 022070 155 KPGMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK----SAA---------------- 206 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~----~t~~lA~~~g~----~~~V~gvDis~~~l~~A~~~~~~----~~~---------------- 206 (303)
.++.+|||+|||+|. ++..+++..+. +.+|+|+|+|+.+++.|++.... .++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45556665432 46899999999999999875310 000
Q ss_pred --CCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEEEECCC
Q 022070 207 --APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 207 --~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.+.+. .+|++...|..+..+..+.||+|+|..++. .+++.+.+.|+|||++++.....
T Consensus 178 ~v~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 00000 378999999988655458999999977652 35678899999999999855443
No 112
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=1.5e-10 Score=102.09 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+.....++.+|||+|||+|.++..+++. + .+|+|+|+|+++++.|++++...+.. +++++.++|+.
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~gvD~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~~ 114 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-G--AIVKAVDISEQMVQMARNRAQGRDVA-----GNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChh
Confidence 4455555422456889999999999999999886 3 69999999999999999998765432 47899999987
Q ss_pred CCCCCCCCccEEEEcCCCch--------HHHHHHhcccCCcEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~--------v~~~~~~~LkpGG~lii 260 (303)
+.. +.||+|++...+.+ +++.+.+.+++++.+.+
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 642 78999998765432 24566677776655544
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.23 E-value=1.2e-10 Score=101.97 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+.++.+|||+|||+|..+..+++.. +..+++|+|+|+++++.|+++. .++.+..+|..+. ...++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~~-~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFDP-FKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccCC-CCCCCE
Confidence 35677899999999999999999875 3479999999999999998763 2567788888773 344799
Q ss_pred cEEEEcCCCchH
Q 022070 233 DAIHVGAAAPEI 244 (303)
Q Consensus 233 D~Iv~~~~~~~v 244 (303)
|+|+++..+.|+
T Consensus 107 D~V~~~~vL~hl 118 (204)
T TIGR03587 107 DLVLTKGVLIHI 118 (204)
T ss_pred EEEEECChhhhC
Confidence 999999887654
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.2e-10 Score=98.79 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=81.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+++.+. +.++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++++... .+++++.+|+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~~~~~~~~~~~~~~~--------~~v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER-A--ARVTAIEIDPRLAPRLREKFAAA--------DNLTVIHGDAL 69 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECCHHHHHHHHHHhccC--------CCEEEEECchh
Confidence 34555554 677889999999999999999988 3 79999999999999999887542 48999999998
Q ss_pred CCCCCCCCccEEEEcCCCc---hHHHHHHhc--ccCCcEEEEEEC
Q 022070 224 KGWPEFAPYDAIHVGAAAP---EIPQALIDQ--LKPGGRMVIPVG 263 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~---~v~~~~~~~--LkpGG~lii~v~ 263 (303)
+.......||.|+++.++. .++..+.+. +.++|.+++...
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 7654435699999998775 333444432 347888887554
No 115
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=2.9e-10 Score=101.42 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=100.8
Q ss_pred CCCcCCCCcccCCCCcChHHHHHH---HHHHHHc-cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 022070 122 PPYVDSPMAIGYNATISAPHMHAT---CLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 197 (303)
Q Consensus 122 ~~y~d~~~~~~~g~~i~~p~~~~~---~l~~l~~-~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A 197 (303)
..+.|-.+....|..|++|.+... +++.++. ..-.+..+||+|||+|..+..++..++ +++|++||.|+.++..|
T Consensus 110 ~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 110 QPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLA 188 (328)
T ss_pred CccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHH
Confidence 445555566667888888876543 3343321 112345899999999999999999985 79999999999999999
Q ss_pred HHHHHHhccCCccCCCCEEEEEc----CCCCCCC-CCCCccEEEEcCCC-------------------------------
Q 022070 198 IQNIEKSAAAPLLKEGSLSVHVG----DGRKGWP-EFAPYDAIHVGAAA------------------------------- 241 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~~~----D~~~~~~-~~~~fD~Iv~~~~~------------------------------- 241 (303)
.+|+.++++. +.+.+++- |..+..+ ..+++|+++++.+.
T Consensus 189 ~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 189 KENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred HHHHHHHhhc-----CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 9999999876 57777744 4444332 23899999999864
Q ss_pred -chHHHHHHhcccCCcEEEEEEC
Q 022070 242 -PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 242 -~~v~~~~~~~LkpGG~lii~v~ 263 (303)
.++..-+.+.|+|||.+.+.+.
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEec
Confidence 1122446689999999999887
No 116
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.22 E-value=1.9e-10 Score=106.56 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022070 148 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 227 (303)
Q Consensus 148 ~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 227 (303)
..+...+.++.+|||+|||+|..+..+++.+....+|+++|+|++|++.|++++..... ..++..+++|+.+...
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccchhh
Confidence 33333456778999999999999999999863237899999999999999998765321 1257778999976432
Q ss_pred CCCCc---c--EEEEcCCC--------chHHHHHHhcccCCcEEEEEEC
Q 022070 228 EFAPY---D--AIHVGAAA--------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 228 ~~~~f---D--~Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
....+ + +++++..+ ..+++.+.+.|+|||++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 22222 2 33443333 2346788999999999998664
No 117
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=2.3e-10 Score=101.73 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=71.8
Q ss_pred HHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022070 146 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 225 (303)
Q Consensus 146 ~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 225 (303)
++..+.....++.+|||+|||+|..+..+++..+ .+|+|+|+|++|++.|+++. ..+++|+.+.
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~l 104 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVAD--------------DKVVGSFEAL 104 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhcc--------------ceEEechhhC
Confidence 4444432234578999999999999999998852 69999999999999987531 2456777665
Q ss_pred CCCCCCccEEEEcCCCch------HHHHHHhcccCC
Q 022070 226 WPEFAPYDAIHVGAAAPE------IPQALIDQLKPG 255 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~------v~~~~~~~LkpG 255 (303)
....++||+|++...+++ .++++.+.|||.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 445589999999887654 457889999994
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.20 E-value=4e-11 Score=113.81 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=101.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--------
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-------- 228 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-------- 228 (303)
+.+|||++||+|.++..+++.. .+|+++|+++.+++.|++|+..+++ .+++++.+|+.+.+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~ 277 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFN 277 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhccccc
Confidence 3579999999999999999875 5899999999999999999988765 4899999998653211
Q ss_pred --------CCCccEEEEcCCCchHHHHH-HhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 229 --------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 229 --------~~~fD~Iv~~~~~~~v~~~~-~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
...||+|+.+.+-..+.+.+ ..+.+|+++++++++... .++..+. . .|+.+.+.++.++|-|.+.
T Consensus 278 ~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-gY~l~~v~~~DmFPqT~Hv 353 (362)
T PRK05031 278 RLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-THKVERFALFDQFPYTHHM 353 (362)
T ss_pred ccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-CcEEEEEEEcccCCCCCcE
Confidence 12589999998865544433 333458999999998752 3344443 2 3999999999999999998
Q ss_pred hh
Q 022070 298 AQ 299 (303)
Q Consensus 298 ~~ 299 (303)
|-
T Consensus 354 E~ 355 (362)
T PRK05031 354 EC 355 (362)
T ss_pred EE
Confidence 74
No 119
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.20 E-value=2e-10 Score=99.10 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=72.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------ 226 (303)
.++++++|||+|||+|.++..+++...+.++|+++|+++.+ . . .+++++.+|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~--~------~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P--I------ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c--C------CCceEEEeeCCChhHHHHHH
Confidence 36889999999999999999999887555789999999864 1 1 36788888876531
Q ss_pred --CCCCCccEEEEcCCC-----------------chHHHHHHhcccCCcEEEEEEC
Q 022070 227 --PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 227 --~~~~~fD~Iv~~~~~-----------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
...+.||+|++++.. +.+++.+.+.|+|||++++.+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 123579999997531 2356778899999999998543
No 120
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.20 E-value=4.5e-11 Score=113.10 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=100.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---------
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--------- 228 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--------- 228 (303)
.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..+++ ++++++.+|..+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccc
Confidence 479999999999999999885 5899999999999999999998765 4899999998653321
Q ss_pred -C------CCccEEEEcCCCchHHHHH-HhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEeeccccch
Q 022070 229 -F------APYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 298 (303)
Q Consensus 229 -~------~~fD~Iv~~~~~~~v~~~~-~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~~ 298 (303)
. ..||+|+.+.+-..+.+.+ ..+.+|+++++++++... .++..+. ++ |+.+.+.++.++|-|++.|
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-HRVERFALFDQFPYTHHME 345 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-cEEEEEEEcccCCCCCcEE
Confidence 0 1389999998754433222 333458999999998753 3445553 33 9999999999999999887
Q ss_pred h
Q 022070 299 Q 299 (303)
Q Consensus 299 ~ 299 (303)
-
T Consensus 346 ~ 346 (353)
T TIGR02143 346 C 346 (353)
T ss_pred E
Confidence 4
No 121
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=6.2e-11 Score=101.50 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=81.0
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~ 230 (303)
.++||.+|||+|||.|.+..+|.+..+ .+.+|+|++++.+..+.++ .+.++++|+.+++. ++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~--v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQ--VDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcC--CeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCC
Confidence 478999999999999999999998643 8999999999998877653 57799999877553 348
Q ss_pred CccEEEEcCCCchHH---HHHHhcccCCcEEEEEECCC
Q 022070 231 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~---~~~~~~LkpGG~lii~v~~~ 265 (303)
+||.||.+-.++++. +-+.++|+-|...|++++|.
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 999999998887664 34567788999999999884
No 122
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.20 E-value=1.9e-10 Score=112.13 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=87.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~ 231 (303)
.+++|++|||+|||+|+.|.++|..++.++.++++|+++..++..++++.+.|+ .++.+...|...... ..+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~ 183 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPET 183 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhh
Confidence 368999999999999999999999998778999999999999999999999876 488899888765321 1257
Q ss_pred ccEEEEcCCCc----------------------------hHHHHHHhcccCCcEEEEEE
Q 022070 232 YDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 232 fD~Iv~~~~~~----------------------------~v~~~~~~~LkpGG~lii~v 262 (303)
||+|+++.++. .+++.+.+.|||||+||.+.
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999998762 22456778999999999855
No 123
>PLN02672 methionine S-methyltransferase
Probab=99.18 E-value=4.3e-10 Score=118.30 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=102.1
Q ss_pred CcCCCCcccCCCCcChHHHHHHHHHHHHccCC---CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 022070 124 YVDSPMAIGYNATISAPHMHATCLQLLEENLK---PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 200 (303)
Q Consensus 124 y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~---~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~ 200 (303)
+....+.++.+..+++|.+...+ +.+..... ++.+|||+|||+|.++..+++.. +..+|+++|+|+++++.|++|
T Consensus 84 F~~l~~~V~p~VLIPRpeTE~lv-e~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 84 RKKLTMMEIPSIFIPEDWSFTFY-EGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ecCCceeeCCCcccCchhHHHHH-HHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 34445666778889998875554 33542211 24689999999999999999986 457999999999999999999
Q ss_pred HHHhccCCc----------cCCCCEEEEEcCCCCCCCCC-CCccEEEEcCCC----------c-----------------
Q 022070 201 IEKSAAAPL----------LKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAA----------P----------------- 242 (303)
Q Consensus 201 ~~~~~~~~~----------~~~~~v~~~~~D~~~~~~~~-~~fD~Iv~~~~~----------~----------------- 242 (303)
+..+++... ...++++++.+|..+..... ++||+||++.+. +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~ 241 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNY 241 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcc
Confidence 987643100 01147999999998765432 379999998753 0
Q ss_pred -----------------hHHHHHHhcccCCcEEEEEECCC
Q 022070 243 -----------------EIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 243 -----------------~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.+.+.+.+.|+|||++++.++..
T Consensus 242 ~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 242 CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred ccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 11234556899999999999865
No 124
>PRK00811 spermidine synthase; Provisional
Probab=99.17 E-value=1.4e-10 Score=106.59 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD 233 (303)
.+.++||+||||+|..+..+++.. ...+|++||+++++++.|++++...... ....++++++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCccc
Confidence 345799999999999999998763 3369999999999999999988654211 0123689999999876443 236899
Q ss_pred EEEEcCCC----------chHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+|+++..- ++.++.+.+.|+|||++++..+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99998532 33457889999999999986543
No 125
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.17 E-value=1.7e-10 Score=113.23 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=80.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+. ..++.+|||||||+|.++..+++.. .+|+|+|+++++++.+++.... ..+++++.+|+.
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT 93 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc
Confidence 34445443 4567799999999999999999984 6899999999999887653211 147899999986
Q ss_pred CC-C-CCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEEE
Q 022070 224 KG-W-PEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 224 ~~-~-~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii~ 261 (303)
.. . .+.++||+|++..++. .+++++.+.|||||++++-
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 42 1 2337899999988654 3457788999999999873
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=3.7e-10 Score=100.14 Aligned_cols=115 Identities=12% Similarity=0.010 Sum_probs=82.6
Q ss_pred cCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHhccCCc
Q 022070 132 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPL 209 (303)
Q Consensus 132 ~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g--~~~~V~gvDis~~~l~~A~~~~~~~~~~~~ 209 (303)
..|+..+.+.+...+... ...+.+|||+|||+|.++..+++.+. +..+|+++|+++.+++.|+++.
T Consensus 29 ~~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------- 96 (241)
T PHA03412 29 ELGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------- 96 (241)
T ss_pred cCCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------
Confidence 346777777766655322 22367999999999999999998642 2369999999999999999764
Q ss_pred cCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc------------------hHHHHHHhcccCCcEEEEEEC
Q 022070 210 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP------------------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 210 ~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~------------------~v~~~~~~~LkpGG~lii~v~ 263 (303)
.++.++.+|...... .++||+||++.++- .+++.+.+++++|+ +|+|..
T Consensus 97 ---~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~ 163 (241)
T PHA03412 97 ---PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQM 163 (241)
T ss_pred ---cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEeCcc
Confidence 257888899875432 36899999998752 13455667555555 577654
No 127
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=99.47 Aligned_cols=126 Identities=24% Similarity=0.279 Sum_probs=92.1
Q ss_pred CCCcCC-CCcccCCCCc--ChHHHHHHHHHHHHccCCC--CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 022070 122 PPYVDS-PMAIGYNATI--SAPHMHATCLQLLEENLKP--GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 196 (303)
Q Consensus 122 ~~y~d~-~~~~~~g~~i--~~p~~~~~~l~~l~~~l~~--g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~ 196 (303)
..|.|. ...|..+..+ .+..+..+.++.++ +++ ..-|||||||+|..+..+... | ..++|+|||+.|++.
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQ 87 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHH
Confidence 444443 3345544433 45666788888887 444 568999999999999888876 3 789999999999999
Q ss_pred HHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-CCccEEEEcCCCchH-----------------HHHHHhcccCCcEE
Q 022070 197 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEI-----------------PQALIDQLKPGGRM 258 (303)
Q Consensus 197 A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~fD~Iv~~~~~~~v-----------------~~~~~~~LkpGG~l 258 (303)
|.++-- .-+++.+|.-++++.. +.||-+++.+++.++ +..++.+|++|++.
T Consensus 88 a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 88 AVEREL-----------EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred HHHhhh-----------hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence 987321 2367888887776543 899999988765332 34588899999999
Q ss_pred EEEEC
Q 022070 259 VIPVG 263 (303)
Q Consensus 259 ii~v~ 263 (303)
++.+-
T Consensus 157 V~QfY 161 (270)
T KOG1541|consen 157 VLQFY 161 (270)
T ss_pred EEEec
Confidence 98663
No 128
>PLN02366 spermidine synthase
Probab=99.15 E-value=3.4e-10 Score=104.99 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~f 232 (303)
.+.++||+||||.|..+..+++. .+..+|+.+|+++++++.|++.+..... .+..++++++.+|+.+.... .++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 45679999999999999999887 3446899999999999999998865421 13336899999998654322 3689
Q ss_pred cEEEEcCCC----------chHHHHHHhcccCCcEEEEEEC
Q 022070 233 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 233 D~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+|+++... +++++.+.+.|+|||+++...+
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 999998643 2456788999999999987443
No 129
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.15 E-value=4.8e-10 Score=99.67 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~f 232 (303)
..++.+|||||||+|.++..+++. + .+++++|+++.+++.|++++...+. ++++...|..+... ..+.|
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL-G--ADVTGIDASEENIEVARLHALESGL-------KIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCCHHHHHHHHHHHHHcCC-------ceEEEecCHHHhhhhcCCCc
Confidence 457889999999999999999886 3 6899999999999999998876432 56777777665431 23789
Q ss_pred cEEEEcCCCc------hHHHHHHhcccCCcEEEEEEC
Q 022070 233 DAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 233 D~Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+|++...++ .+++.+.+.|+|||++++...
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999876554 346788899999999998654
No 130
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.14 E-value=9.2e-10 Score=97.38 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=68.4
Q ss_pred HHHHHHHHc-cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 144 ATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 144 ~~~l~~l~~-~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
..++..+.. ...++.+|||||||+|.++..+++.. .+|+++|+|+.+++.|++++...+.. +++.+..+|.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~ 121 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA-----GNITFEVGDL 121 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cCcEEEEcCc
Confidence 344455542 13567899999999999999999874 57999999999999999998775542 4788999884
Q ss_pred CCCCCCCCCccEEEEcCCCch
Q 022070 223 RKGWPEFAPYDAIHVGAAAPE 243 (303)
Q Consensus 223 ~~~~~~~~~fD~Iv~~~~~~~ 243 (303)
.. ..+.||+|++...+.+
T Consensus 122 ~~---~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 122 ES---LLGRFDTVVCLDVLIH 139 (230)
T ss_pred hh---ccCCcCEEEEcchhhc
Confidence 32 2378999999877644
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.13 E-value=2.1e-10 Score=109.87 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFA 230 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~ 230 (303)
.++.+|||+|||+|+++..++.. + ..+|+++|+|+.+++.|++|+..+++. ..+++++.+|+.+.+. ..+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCC
Confidence 46789999999999998876653 3 259999999999999999999988752 1378999999876432 235
Q ss_pred CccEEEEcCCC---------------chHHHHHHhcccCCcEEEEEE
Q 022070 231 PYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 231 ~fD~Iv~~~~~---------------~~v~~~~~~~LkpGG~lii~v 262 (303)
+||+|+++.+. ..+.+.+.++|+|||.+++..
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 89999999764 122345678999999999743
No 132
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.12 E-value=8.4e-10 Score=83.11 Aligned_cols=95 Identities=27% Similarity=0.372 Sum_probs=75.2
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHV 237 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD~Iv~ 237 (303)
+|+|+|||.|..+..+++. ...+++++|+++..++.+++....... .++.+..+|..+... ..+.||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLA------DNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccc------cceEEEEcChhhhccccCCceEEEEE
Confidence 4899999999999999882 347999999999999999864333222 478899999887553 3478999999
Q ss_pred cCCCch-------HHHHHHhcccCCcEEEEE
Q 022070 238 GAAAPE-------IPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 238 ~~~~~~-------v~~~~~~~LkpGG~lii~ 261 (303)
+.++.. +++.+.+.|+|||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 987743 457788899999999975
No 133
>PRK06202 hypothetical protein; Provisional
Probab=99.11 E-value=7.5e-10 Score=98.57 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~---g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.++.+|||+|||+|.++..+++.. +++.+|+|+|+++++++.|+++... .++.+...+........++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 566799999999999999888653 3446999999999999999887543 2455555554332223478
Q ss_pred ccEEEEcCCCchH--------HHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v--------~~~~~~~LkpGG~lii 260 (303)
||+|+++..++++ ++++.+.++ ++.++.
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEe
Confidence 9999999887654 345667776 444443
No 134
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.11 E-value=1.3e-09 Score=96.11 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~ 234 (303)
.+.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+. .++.+..+|..+.... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccE
Confidence 47799999999999999888863 5799999999999999998877543 2578888887654322 268999
Q ss_pred EEEcCCCc------hHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAAP------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~~------~v~~~~~~~LkpGG~lii~v~ 263 (303)
|++...++ .+++.+.+.|+|||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99886553 356788899999999998654
No 135
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.11 E-value=8.9e-10 Score=100.44 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
-.|++|||||||+||.+-.++.. |+ ..|+|+|.++...-..+---.-.+. ++..+......+.++..+.||+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~lplgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFELPLGVEDLPNLGAFDT 185 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhCC------CccEEEcCcchhhccccCCcCE
Confidence 35889999999999999999988 44 6899999998765543211111111 2222333233333444689999
Q ss_pred EEEcCCCch------HHHHHHhcccCCcEEEEEECC--CceeEEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 235 IHVGAAAPE------IPQALIDQLKPGGRMVIPVGN--IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 235 Iv~~~~~~~------v~~~~~~~LkpGG~lii~v~~--~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
|++-+++=| .++.+.+.|++||.+|+..-- +......+ . ++++ -.+..|.|+|-....
T Consensus 186 VF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~-P--~~rY--a~m~nv~FiPs~~~L 251 (315)
T PF08003_consen 186 VFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV-P--EDRY--AKMRNVWFIPSVAAL 251 (315)
T ss_pred EEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc-c--CCcc--cCCCceEEeCCHHHH
Confidence 999998744 357889999999999974421 22222222 1 2223 367788999976543
No 136
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=8.4e-10 Score=97.64 Aligned_cols=101 Identities=24% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCC---------ccCCCCEEEEEcCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP---------LLKEGSLSVHVGDGRK 224 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~---------~~~~~~v~~~~~D~~~ 224 (303)
+.++.+|||+|||.|..+.+||+. | .+|+|+|+|+..++.+.+ +.++.. .....+|++.++|..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-G--~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-G--HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-C--CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccC
Confidence 456789999999999999999987 4 799999999999998643 222110 0123578999999987
Q ss_pred CCCC-CCCccEEEEcCCCch--------HHHHHHhcccCCcEEEE
Q 022070 225 GWPE-FAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~-~~~fD~Iv~~~~~~~--------v~~~~~~~LkpGG~lii 260 (303)
..+. .+.||.|+....+.+ +.+.+.++|||||++++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5433 268999997665433 35788899999996443
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.10 E-value=7.8e-10 Score=100.93 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=80.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~ 234 (303)
...+||+||||+|..+..+++.. +..+++++|+++++++.|++++..... .+...+++++.+|+.+.+.. .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccE
Confidence 34599999999999998888764 346899999999999999998765431 12335788999888653321 368999
Q ss_pred EEEcCCC----------chHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+++... .+.++.+.+.|+|||++++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9997652 3445788999999999998644
No 138
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.10 E-value=4.4e-10 Score=97.40 Aligned_cols=96 Identities=23% Similarity=0.330 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~~ 231 (303)
++++.+|||+|||+|.++..+++..+ ..++|+|+++++++.++++ +++++.+|..+.. ...++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCC
Confidence 56788999999999999999987643 5789999999999888641 4677778876532 22368
Q ss_pred ccEEEEcCCCchHH---HHHHhcccCCcEEEEEECC
Q 022070 232 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 232 fD~Iv~~~~~~~v~---~~~~~~LkpGG~lii~v~~ 264 (303)
||+|+++.+++++. +.+.+.++++|.+++.+++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999998876552 3344556677777777655
No 139
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=6.5e-10 Score=97.16 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=92.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..+.. +...+++||||.-+||.+...|..+.++++|+++|++++..+.+.+..+..++. +.|+++++++.
T Consensus 62 g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----~KI~~i~g~a~ 135 (237)
T KOG1663|consen 62 GQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----HKITFIEGPAL 135 (237)
T ss_pred HHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----ceeeeeecchh
Confidence 334444332 344579999999999999999999988999999999999999999988888876 79999999987
Q ss_pred CCCC------CCCCccEEEEcCCCch---HHHHHHhcccCCcEEEE
Q 022070 224 KGWP------EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~------~~~~fD~Iv~~~~~~~---v~~~~~~~LkpGG~lii 260 (303)
+.+. +.+.||++|.+..... ..+++.+++|+||++++
T Consensus 136 esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 136 ESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 6432 2378999999998754 45789999999999995
No 140
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=4.5e-10 Score=115.14 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD 233 (303)
.+|.+|||+|||+|.++..+++. |. .+|+++|+|+.+++.|++|+..+++. ..+++++.+|..+.+. ..++||
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcC
Confidence 45789999999999999999986 42 47999999999999999999988752 1379999999866332 136899
Q ss_pred EEEEcCCC-----------------chHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~-----------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+|+++.+. ..+.+.+.+.|+|||.+++....
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999763 12446678899999999886654
No 141
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=7.7e-10 Score=93.34 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=78.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
..+|||+|||.|.+...|++. +-++..+|+|+|+.+++.|+....+.+.. +.|+|.+.|+.+.....+.||+|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~-----n~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS-----NEIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC-----cceeEEEeeccCCcccccceeEEe
Confidence 349999999999999999998 45578999999999999998777776664 459999999987433336777775
Q ss_pred EcCCCc--------------hHHHHHHhcccCCcEEEEEECC
Q 022070 237 VGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 237 ~~~~~~--------------~v~~~~~~~LkpGG~lii~v~~ 264 (303)
--+.+. -....+.+.|+|||++++..=|
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 433221 1246788999999999985444
No 142
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=6.4e-10 Score=107.46 Aligned_cols=143 Identities=24% Similarity=0.304 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 141 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 141 ~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
.+....++.+. ..++++|||+-||.|.++..+|+.. .+|+|+|+++++++.|++|++.+++ +|+++..+
T Consensus 280 kl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~ 348 (432)
T COG2265 280 KLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI------DNVEFIAG 348 (432)
T ss_pred HHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeC
Confidence 34445555555 5678899999999999999999875 7999999999999999999999887 47999999
Q ss_pred CCCCCCCCC---CCccEEEEcCCCc----hHHHHHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEe
Q 022070 221 DGRKGWPEF---APYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYV 291 (303)
Q Consensus 221 D~~~~~~~~---~~fD~Iv~~~~~~----~v~~~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~ 291 (303)
++.+..+.. ..+|.|+.+.+-. .+.+.+ ..++|..+++++|+... +++..+. ++.+..+.+.++..+
T Consensus 349 ~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVSCNP~TlaRDl~~L~---~~gy~i~~v~~~DmF 424 (432)
T COG2265 349 DAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVSCNPATLARDLAILA---STGYEIERVQPFDMF 424 (432)
T ss_pred CHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHH---hCCeEEEEEEEeccC
Confidence 987654332 4789999997643 444444 34788999999998753 2333332 444778899999999
Q ss_pred eccccch
Q 022070 292 PLTSRDA 298 (303)
Q Consensus 292 Pl~~~~~ 298 (303)
|.|++.|
T Consensus 425 P~T~HvE 431 (432)
T COG2265 425 PHTHHVE 431 (432)
T ss_pred CCccccC
Confidence 9999876
No 143
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=97.11 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=70.2
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022070 133 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 212 (303)
Q Consensus 133 ~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~ 212 (303)
.|+..+.+.+...++ +. .+++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------
Confidence 366666665554432 22 3455699999999999999888874 2369999999999999998763
Q ss_pred CCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 213 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 213 ~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
.+++++.+|+.+... ...||+|+++.++
T Consensus 109 ~~v~~v~~D~~e~~~-~~kFDlIIsNPPF 136 (279)
T PHA03411 109 PEAEWITSDVFEFES-NEKFDVVISNPPF 136 (279)
T ss_pred cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence 367899999987543 3689999999876
No 144
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.05 E-value=2.1e-09 Score=100.09 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcc-CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 142 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 142 ~~~~~l~~l~~~-l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
+...++..+... ..++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.|+++....... .....++++...
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~ 204 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEc
Confidence 344555555421 125789999999999999999987 4 69999999999999999998764211 011136788888
Q ss_pred CCCCCCCCCCCccEEEEcCCCchHH
Q 022070 221 DGRKGWPEFAPYDAIHVGAAAPEIP 245 (303)
Q Consensus 221 D~~~~~~~~~~fD~Iv~~~~~~~v~ 245 (303)
|..+. .+.||+|++..++.|++
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecC
Confidence 87542 37899999988776553
No 145
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.05 E-value=1.6e-09 Score=100.04 Aligned_cols=98 Identities=24% Similarity=0.360 Sum_probs=80.3
Q ss_pred cCCCCc-ChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022070 132 GYNATI-SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 210 (303)
Q Consensus 132 ~~g~~i-~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~ 210 (303)
..||+. ..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+++.+++.+++++...+..
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~--- 84 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA--- 84 (294)
T ss_pred CCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC---
Confidence 345555 56778888888775 7889999999999999999999874 68999999999999999998765432
Q ss_pred CCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 211 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 211 ~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
++++++.+|+.+.. ...||.|+++.+.
T Consensus 85 --~~v~ii~~Dal~~~--~~~~d~VvaNlPY 111 (294)
T PTZ00338 85 --SKLEVIEGDALKTE--FPYFDVCVANVPY 111 (294)
T ss_pred --CcEEEEECCHhhhc--ccccCEEEecCCc
Confidence 58999999997643 2578999998765
No 146
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.4e-09 Score=100.38 Aligned_cols=113 Identities=27% Similarity=0.351 Sum_probs=89.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~-~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
+.++......+++|++|||.++++|+-|.++|+..... ..|+++|+++..++..++|+++.|+. |+.+...|.
T Consensus 144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~------nv~~~~~d~ 217 (355)
T COG0144 144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR------NVIVVNKDA 217 (355)
T ss_pred HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC------ceEEEeccc
Confidence 44444444458999999999999999999999998543 46699999999999999999998874 788888887
Q ss_pred CCC---CCCCCCccEEEEcCCC----------------------------chHHHHHHhcccCCcEEEEEE
Q 022070 223 RKG---WPEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 223 ~~~---~~~~~~fD~Iv~~~~~----------------------------~~v~~~~~~~LkpGG~lii~v 262 (303)
+.. ....++||+|++++++ ..+++.+.+.|||||+|+.++
T Consensus 218 ~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 218 RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 643 2222369999999876 123467788999999999865
No 147
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4e-09 Score=89.80 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHH-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022070 139 APHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 217 (303)
Q Consensus 139 ~p~~~~~~l~~l~-~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~ 217 (303)
.+...+.++.... ...-.|..|+|+|||||.++..++.. |+ .+|+|+|+++++++.+++|+.+.. .+|++
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~-------g~v~f 97 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL-------GDVEF 97 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC-------CceEE
Confidence 3344455544432 13456789999999999999888876 55 799999999999999999998843 58999
Q ss_pred EEcCCCCCCCCCCCccEEEEcCCC
Q 022070 218 HVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 218 ~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
..+|..+. .+++|.++.|.++
T Consensus 98 ~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 98 VVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred EEcchhhc---CCccceEEECCCC
Confidence 99999884 3789999999876
No 148
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=5e-10 Score=96.23 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=75.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-EEEcCCCCCC-CCCCCccEEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGW-PEFAPYDAIH 236 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~-~~~~D~~~~~-~~~~~fD~Iv 236 (303)
.|||+|||+|..=.+.-.. +..+|+++|.++.|-+.|.+.+++..- .++. ++.+++.+.. ..+++||.||
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKP------LQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccC------cceEEEEeechhcCcccccCCeeeEE
Confidence 5899999999876555432 447999999999999999999988633 4676 8889987754 2458999998
Q ss_pred EcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 237 VGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 237 ~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
+...+ ...++++.++|||||++++.
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 87644 35578999999999999983
No 149
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.01 E-value=2.2e-09 Score=98.14 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=72.6
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022070 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 216 (303)
Q Consensus 137 i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~ 216 (303)
+..+.+...+++.+. +.++.+|||||||+|.++..+++.. .+|+|+|+++++++.+++++.. ++++
T Consensus 25 l~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---------~~v~ 90 (272)
T PRK00274 25 LIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---------DNLT 90 (272)
T ss_pred CCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---------CceE
Confidence 344556677777765 6788999999999999999999984 4899999999999999887642 4899
Q ss_pred EEEcCCCCCCCCCCCccEEEEcCCCc
Q 022070 217 VHVGDGRKGWPEFAPYDAIHVGAAAP 242 (303)
Q Consensus 217 ~~~~D~~~~~~~~~~fD~Iv~~~~~~ 242 (303)
++.+|+.+.....-.+|.|+++.+..
T Consensus 91 ~i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 91 IIEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred EEEChhhcCCHHHcCcceEEEeCCcc
Confidence 99999887532211158999988763
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=99.00 E-value=2.3e-09 Score=100.70 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 232 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~--~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~f 232 (303)
...+||+||||.|+.+..+.+. ++..+|++||+++++++.|++. +....- ..+..++++++.+|+.+.+.. .+.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3469999999999988888875 3447999999999999999962 111100 012336899999999875432 3689
Q ss_pred cEEEEcCCC-----------chHHHHHHhcccCCcEEEEEEC
Q 022070 233 DAIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 233 D~Iv~~~~~-----------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+|+++..- .+.++.+.+.|+|||++++..+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999999532 2356788999999999988544
No 151
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.2e-09 Score=97.48 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=97.2
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022070 133 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 212 (303)
Q Consensus 133 ~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~ 212 (303)
.+..|.-+...++++..|+ ++||.+|+|-|+|+|.++.++++.++|.++++..|+.+...+.|.+.+++.++.
T Consensus 84 hRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----- 156 (314)
T KOG2915|consen 84 HRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----- 156 (314)
T ss_pred CcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-----
Confidence 3333433334578888887 899999999999999999999999999999999999999999999999998876
Q ss_pred CCEEEEEcCCCCC-CCC-CCCccEEEEcCCCchHH-HHHHhcccCCc-EEEE
Q 022070 213 GSLSVHVGDGRKG-WPE-FAPYDAIHVGAAAPEIP-QALIDQLKPGG-RMVI 260 (303)
Q Consensus 213 ~~v~~~~~D~~~~-~~~-~~~fD~Iv~~~~~~~v~-~~~~~~LkpGG-~lii 260 (303)
+++++...|.... ... ...+|.|+.+.+.++.. ..+...||.+| +++-
T Consensus 157 ~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 157 DNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEe
Confidence 7999999998753 222 36899999998877643 44555788777 4443
No 152
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=5.4e-09 Score=94.78 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=76.8
Q ss_pred CC-CcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022070 134 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 212 (303)
Q Consensus 134 g~-~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~ 212 (303)
|| .+..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+++.+++.+++++...
T Consensus 8 GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~-------- 74 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAA-------- 74 (258)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccC--------
Confidence 44 3456777788888775 7788999999999999999999984 68999999999999999887541
Q ss_pred CCEEEEEcCCCCCCCCCCCccEEEEcCCCc
Q 022070 213 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 242 (303)
Q Consensus 213 ~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~ 242 (303)
++++++.+|+.+... ..||.|+++.+..
T Consensus 75 ~~v~ii~~D~~~~~~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 75 GNVEIIEGDALKVDL--PEFNKVVSNLPYQ 102 (258)
T ss_pred CCEEEEEeccccCCc--hhceEEEEcCCcc
Confidence 589999999977432 4589999997763
No 153
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=102.65 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=84.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CCCCc
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPY 232 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~~f 232 (303)
|++|||+-|-||.++.++|.. |. .+|++||.|...++.|++|+..+++. ..++.++++|+.+.+. ...+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCcc
Confidence 999999999999999999987 42 49999999999999999999998863 2568999999876442 22489
Q ss_pred cEEEEcCCC---------------chHHHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~---------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+|+.+.+. ..+...+.++|+|||.++++...
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999999863 23456788999999999987654
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.95 E-value=4.7e-09 Score=91.47 Aligned_cols=100 Identities=26% Similarity=0.308 Sum_probs=75.9
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+++|++|+|..||-|+++..+|+.. ...+|+++|++|..++..+++++.+++. +++.+..+|.++..+ .+.|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHHHhcC-cccc
Confidence 46889999999999999999999853 3378999999999999999999999876 679999999988766 5899
Q ss_pred cEEEEcCCC--chHHHHHHhcccCCcEEE
Q 022070 233 DAIHVGAAA--PEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 233 D~Iv~~~~~--~~v~~~~~~~LkpGG~li 259 (303)
|.|+.+.+. .+.++.+..++++||.+-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999999764 467788999999998864
No 155
>PRK03612 spermidine synthase; Provisional
Probab=98.94 E-value=3.3e-09 Score=105.31 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~--~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~ 231 (303)
++.++|||||||+|..+..+++. ++..+|+++|+++++++.++++ +..... ..+..++++++.+|+++... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 45679999999999999998875 3336999999999999999984 322110 01223589999999887432 2368
Q ss_pred ccEEEEcCCCc-----------hHHHHHHhcccCCcEEEEEEC
Q 022070 232 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 232 fD~Iv~~~~~~-----------~v~~~~~~~LkpGG~lii~v~ 263 (303)
||+|+++...+ +..+.+.+.|||||++++...
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99999986432 345788999999999998554
No 156
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=1e-08 Score=92.63 Aligned_cols=106 Identities=18% Similarity=0.132 Sum_probs=80.0
Q ss_pred CcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022070 136 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 215 (303)
Q Consensus 136 ~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v 215 (303)
.+..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+++.+++.+++++... .++
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~--------~~v 77 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLY--------ERL 77 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcC--------CcE
Confidence 3455677777887775 6788999999999999999999986 46999999999999998876431 589
Q ss_pred EEEEcCCCCCCCCCCCcc---EEEEcCCCchHHHHHHhcc-cCCc
Q 022070 216 SVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQL-KPGG 256 (303)
Q Consensus 216 ~~~~~D~~~~~~~~~~fD---~Iv~~~~~~~v~~~~~~~L-kpGG 256 (303)
+++.+|+.+... ..|| .|+++.+...-.+.+.+++ .+++
T Consensus 78 ~v~~~D~~~~~~--~~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 78 EVIEGDALKVDL--PDFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred EEEECchhcCCh--hHcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 999999877533 3466 8888877654334444555 3443
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.93 E-value=1.9e-08 Score=89.19 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh------ccCCccCCCCEEEEEcCCCCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS------AAAPLLKEGSLSVHVGDGRKGWP 227 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~------~~~~~~~~~~v~~~~~D~~~~~~ 227 (303)
+.++.+||+.|||.|.-+.+||.. | .+|+|+|+|+..++.+.+..... +........++++.++|..+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 456789999999999999999998 4 78999999999999886521100 00000122489999999988532
Q ss_pred ---CCCCccEEEEcCCCchH--------HHHHHhcccCCcEEEEEE
Q 022070 228 ---EFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 228 ---~~~~fD~Iv~~~~~~~v--------~~~~~~~LkpGG~lii~v 262 (303)
..+.||.|+-.+.+..+ .+.+.++|+|||.+++..
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 23689999987766433 467889999999998743
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.92 E-value=1.1e-08 Score=89.10 Aligned_cols=101 Identities=25% Similarity=0.318 Sum_probs=81.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCCCcc
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYD 233 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~~~~~fD 233 (303)
...+||||||.|.+...+|+.. |+..++|+|++...+..|.+++...++ .|+.++.+|+...+ ...+++|
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~ 90 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVD 90 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchh
Confidence 3389999999999999999996 779999999999999999999988776 59999999998732 2347899
Q ss_pred EEEEcCCC--------------chHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
.|++..+- +..++.+.+.|+|||.+.+-...
T Consensus 91 ~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 91 RIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp EEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred eEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 99998754 23467889999999999997765
No 159
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=2.6e-08 Score=86.25 Aligned_cols=103 Identities=14% Similarity=-0.002 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CC-C
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EF-A 230 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~-~ 230 (303)
-++.+|||++||+|.++..++.+. . .+|+++|.++..++.+++|++.++.. ++++++.+|+.+.+. .. .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~~~-----~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLKSG-----EQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCc-----ccEEEEehhHHHHHHHhhccCC
Confidence 357899999999999999999984 3 58999999999999999999987653 478999999855321 11 2
Q ss_pred CccEEEEcCCCch-----HHHHHH--hcccCCcEEEEEECC
Q 022070 231 PYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 264 (303)
Q Consensus 231 ~fD~Iv~~~~~~~-----v~~~~~--~~LkpGG~lii~v~~ 264 (303)
.||+|+.+.++.. +++.+. .+|+++|.+++....
T Consensus 121 ~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 121 FDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4899999987732 233332 468999999986654
No 160
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.92 E-value=5.9e-09 Score=95.81 Aligned_cols=113 Identities=27% Similarity=0.340 Sum_probs=90.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
+.++.......++|++|||+++++|+.+.++|+.++..+.+++.|+++..+...++++.+.|. .++.+...|..
T Consensus 73 sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~ 146 (283)
T PF01189_consen 73 SSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADAR 146 (283)
T ss_dssp HHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHH
T ss_pred ccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccc
Confidence 334333333488999999999999999999999998789999999999999999999999877 48888888876
Q ss_pred CCC--CCCCCccEEEEcCCC----------------------------chHHHHHHhcc----cCCcEEEEEE
Q 022070 224 KGW--PEFAPYDAIHVGAAA----------------------------PEIPQALIDQL----KPGGRMVIPV 262 (303)
Q Consensus 224 ~~~--~~~~~fD~Iv~~~~~----------------------------~~v~~~~~~~L----kpGG~lii~v 262 (303)
... .....||.|++++++ ..+++.+.+.+ ||||+++.+.
T Consensus 147 ~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 147 KLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp HHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 531 122469999999876 12346778899 9999999866
No 161
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=5.2e-09 Score=96.77 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+-.++.|||+|||+|.++.+.|+. |. .+|+++|-|.-+ +.|++.+..+++. +.|+++.+.+.+...+.++.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N~~~-----~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDNGLE-----DVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhcCcc-----ceEEEeecceEEEecCcccee
Confidence 456889999999999999999998 44 799999977554 9999999998875 568999998877433358999
Q ss_pred EEEEcCCC-----chHHHHHH----hcccCCcEEE
Q 022070 234 AIHVGAAA-----PEIPQALI----DQLKPGGRMV 259 (303)
Q Consensus 234 ~Iv~~~~~-----~~v~~~~~----~~LkpGG~li 259 (303)
+|++-.+- +.+++.+. +.|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99998764 44444443 6899999876
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=7.1e-09 Score=91.17 Aligned_cols=111 Identities=25% Similarity=0.341 Sum_probs=76.8
Q ss_pred HHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCC------------------
Q 022070 147 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP------------------ 208 (303)
Q Consensus 147 l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~------------------ 208 (303)
+.+|....-.+..+|||||-+|.+++.+|+.+++ ..+.|+||++..++.|++++....-..
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3444434456678999999999999999999976 689999999999999999885322100
Q ss_pred ----------------cc--CCCCEEEEEcCCCCCCCCCCCccEEEEcCCC------------chHHHHHHhcccCCcEE
Q 022070 209 ----------------LL--KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------------PEIPQALIDQLKPGGRM 258 (303)
Q Consensus 209 ----------------~~--~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~------------~~v~~~~~~~LkpGG~l 258 (303)
++ ...|..+...|.. +.....||+|+|-..- ..++..+.++|.|||+|
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGIL 205 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEE
Confidence 00 0011222222222 1233689999876543 34578899999999999
Q ss_pred EE
Q 022070 259 VI 260 (303)
Q Consensus 259 ii 260 (303)
|+
T Consensus 206 vv 207 (288)
T KOG2899|consen 206 VV 207 (288)
T ss_pred EE
Confidence 98
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.8e-08 Score=93.60 Aligned_cols=113 Identities=27% Similarity=0.295 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|.+ ++++.-+. ++++|+.|||-=||||.+...+... | .+++|+|++..|++-|+.|+...++. ...+..
T Consensus 183 P~l-AR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~i~------~~~~~~ 251 (347)
T COG1041 183 PRL-ARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYGIE------DYPVLK 251 (347)
T ss_pred HHH-HHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhCcC------ceeEEE
Confidence 444 44444444 4899999999999999999888877 5 89999999999999999999998753 555555
Q ss_pred c-CCCCCCCCCCCccEEEEcCCC---------------chHHHHHHhcccCCcEEEEEEC
Q 022070 220 G-DGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 220 ~-D~~~~~~~~~~fD~Iv~~~~~---------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
+ |+.........+|.|+++.+. ...++.+.+.||+||+++++.+
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 887755443469999999764 2345778899999999999887
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.89 E-value=6.6e-10 Score=96.93 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022070 138 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 217 (303)
Q Consensus 138 ~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~ 217 (303)
+-|...+.++..+. ..+-.++||+|||||..+..+-.+. .+.+|+|+|++|++.|.++-.-. .+
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD-----------~L 172 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYD-----------TL 172 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchH-----------HH
Confidence 34566666666554 4556799999999999999988886 68999999999999997642110 11
Q ss_pred EEcCCCCCC--CCCCCccEEEEcCC------CchHHHHHHhcccCCcEEEEEECCC
Q 022070 218 HVGDGRKGW--PEFAPYDAIHVGAA------APEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 218 ~~~D~~~~~--~~~~~fD~Iv~~~~------~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.++|..... ...++||+|+...+ ++.++-.+...|+|||.+.+++...
T Consensus 173 ~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 222222111 13378999987654 4667788889999999999998764
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.88 E-value=2.2e-08 Score=85.96 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHHhccCCc
Q 022070 139 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGR---------AVGVEHIPELVVSSIQNIEKSAAAPL 209 (303)
Q Consensus 139 ~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~---------V~gvDis~~~l~~A~~~~~~~~~~~~ 209 (303)
.|.+...++.... .++++.|||--||+|.+....|.... ... ++|.|+++.+++.|++|+...++.
T Consensus 13 ~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-- 87 (179)
T PF01170_consen 13 RPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-- 87 (179)
T ss_dssp -HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--
T ss_pred CHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccC--
Confidence 4555555665554 78899999999999999998888753 344 899999999999999999988765
Q ss_pred cCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC--------------chHHHHHHhcccCCcEEEEE
Q 022070 210 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 210 ~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~ 261 (303)
..+.+...|+.+.....+.+|.|+++.++ ..+.+.+.+.|++...++++
T Consensus 88 ---~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 ---DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp ---GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred ---CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 57899999998765344789999999876 22346777888994444443
No 166
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.88 E-value=8.8e-10 Score=104.29 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 227 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------ 227 (303)
..++ +|||+-||.|.++..+|+.. .+|+|||+++++++.|++|++.+++ +|++++.+++.+...
T Consensus 195 ~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 195 LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-
T ss_pred cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhH
Confidence 3344 89999999999999999986 7999999999999999999999887 599999877543211
Q ss_pred ----------CCCCccEEEEcCCCc----hHHHHHHhcccCCcEEEEEECCCc--eeEEEEEEcCCCCEEEEEeeeEEEe
Q 022070 228 ----------EFAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYV 291 (303)
Q Consensus 228 ----------~~~~fD~Iv~~~~~~----~v~~~~~~~LkpGG~lii~v~~~~--~~~~~~~~~~~~~~~~~~l~~v~f~ 291 (303)
....+|+|+.+.+-. .+.+.+. ++.=+++++|+... +++..+. . .|..+.+.++.++
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~L~---~-~y~~~~v~~~DmF 337 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVSCNPATLARDLKILK---E-GYKLEKVQPVDMF 337 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEES-HHHHHHHHHHHH---C-CEEEEEEEEE-SS
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHh---h-cCEEEEEEEeecC
Confidence 012689999997543 3344333 34567888887652 3344442 2 3999999999999
Q ss_pred eccccchh
Q 022070 292 PLTSRDAQ 299 (303)
Q Consensus 292 Pl~~~~~~ 299 (303)
|-|.+.|-
T Consensus 338 P~T~HvE~ 345 (352)
T PF05958_consen 338 PQTHHVET 345 (352)
T ss_dssp TTSS--EE
T ss_pred CCCCcEEE
Confidence 99998874
No 167
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.86 E-value=1.1e-08 Score=90.60 Aligned_cols=103 Identities=29% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hccC-----CccCCCCEEEEEcCCCCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAA-----PLLKEGSLSVHVGDGRKGWP 227 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~-~~~~-----~~~~~~~v~~~~~D~~~~~~ 227 (303)
.+++.+||+.|||.|+-...||+. | .+|+|+|+|+.+++.+.+.... .... ......+|++.++|..+..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 677789999999999999999998 4 7999999999999988433211 1100 00223578999999988544
Q ss_pred CC-CCccEEEEcCCCc--------hHHHHHHhcccCCcEEE
Q 022070 228 EF-APYDAIHVGAAAP--------EIPQALIDQLKPGGRMV 259 (303)
Q Consensus 228 ~~-~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~li 259 (303)
.. ++||.|+-.+.+. ...+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 33 6899999887663 33578889999999943
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.84 E-value=3e-08 Score=94.69 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
++.+|||++||+|..+..+|...+ ..+|+++|+++..++.+++|++.+++ .++++..+|+...+...+.||+|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V 129 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVV 129 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEE
Confidence 346899999999999999998764 25899999999999999999998876 36789999986644323679999
Q ss_pred EEcCCC--chHHHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEEEEEeeeEEEeeccc
Q 022070 236 HVGAAA--PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 295 (303)
Q Consensus 236 v~~~~~--~~v~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~~~~l~~v~f~Pl~~ 295 (303)
+++..- ..+++.+.+.+++||++.++... ...+. |.+..+.+.....+|...
T Consensus 130 ~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD----~~~L~----g~y~~~~~~~yd~fP~~~ 183 (382)
T PRK04338 130 DIDPFGSPAPFLDSAIRSVKRGGLLCVTATD----TAPLC----GAYPKSCLRKYGAVPLKT 183 (382)
T ss_pred EECCCCCcHHHHHHHHHHhcCCCEEEEEecC----chhhc----CCChHHHHHHhcCcccCC
Confidence 998642 35567777889999999997322 22221 124444555555555543
No 169
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.5e-08 Score=82.20 Aligned_cols=98 Identities=20% Similarity=0.332 Sum_probs=80.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
...++|||||+|..+.++++..+++..+.++|+++.+++..++....++. +++.+..|....+.. ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------HIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------ccceeehhHHhhhcc-CCccEEE
Confidence 56899999999999999999999889999999999999998888777654 678899998887766 8999999
Q ss_pred EcCCC-----------------------chHH----HHHHhcccCCcEEEEEE
Q 022070 237 VGAAA-----------------------PEIP----QALIDQLKPGGRMVIPV 262 (303)
Q Consensus 237 ~~~~~-----------------------~~v~----~~~~~~LkpGG~lii~v 262 (303)
.+.+. ..+. +.+-+.|.|.|.+++-.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 88754 1112 33446788999998744
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=2.4e-08 Score=93.04 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEc-CCC---CCC-CCC
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVG-DGR---KGW-PEF 229 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~-~~~~~~~~~~v~~~~~-D~~---~~~-~~~ 229 (303)
++.++||||||+|.+...++... +..+++|+|+++.+++.|+++++.+ ++. ++|+++.. |.. ... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~-----~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN-----GAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc-----CcEEEEEccchhhhhhcccccC
Confidence 45799999999999888887764 3489999999999999999999988 564 46777643 322 221 124
Q ss_pred CCccEEEEcCCCc
Q 022070 230 APYDAIHVGAAAP 242 (303)
Q Consensus 230 ~~fD~Iv~~~~~~ 242 (303)
+.||+|+|+.++.
T Consensus 188 ~~fDlivcNPPf~ 200 (321)
T PRK11727 188 ERFDATLCNPPFH 200 (321)
T ss_pred CceEEEEeCCCCc
Confidence 6899999999873
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.83 E-value=3e-08 Score=88.02 Aligned_cols=100 Identities=24% Similarity=0.312 Sum_probs=85.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCCCccE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFAPYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~fD~ 234 (303)
..+||||||.|.+...+|+.. |+..++|||+....+..|.+.+.+.++ +|+.++++|+.+. ..+.++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 489999999999999999994 779999999999999999999998776 4999999998753 334469999
Q ss_pred EEEcCCC--------------chHHHHHHhcccCCcEEEEEECC
Q 022070 235 IHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 235 Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+++.+- +...+.+.+.|+|||.+.+...+
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 9988754 34567889999999999998765
No 172
>PLN02823 spermine synthase
Probab=98.82 E-value=4e-08 Score=92.21 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~ 234 (303)
..++||.||+|.|..+..+.+.. +..+|+.||++++.++.|++.+..... .+..++++++.+|+++.+.. .++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 34699999999999999888763 346899999999999999998754321 12336899999999875532 368999
Q ss_pred EEEcCCC------------chHHH-HHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAA------------PEIPQ-ALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~------------~~v~~-~~~~~LkpGG~lii~v~ 263 (303)
|+++..- .+.++ .+.+.|+|||++++...
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9998421 23455 78899999999997654
No 173
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.80 E-value=1.9e-08 Score=92.10 Aligned_cols=104 Identities=19% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~ 231 (303)
..|++|||+-|-+|.++.+++.. |. .+|++||.|+.+++.|++|+..+++. ..+++++..|+.+.+. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCC
Confidence 35789999999999999988875 42 58999999999999999999998753 3589999999876432 2379
Q ss_pred ccEEEEcCCC------------chHHHHHHhcccCCcEEEEEECC
Q 022070 232 YDAIHVGAAA------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 232 fD~Iv~~~~~------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
||+||++.+. ..+...+.++|+|||.+++....
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9999999864 34556788999999999876544
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2e-08 Score=81.87 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=82.8
Q ss_pred cccCCCCcChHHHHHHHHHHHHccC--CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022070 130 AIGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 207 (303)
Q Consensus 130 ~~~~g~~i~~p~~~~~~l~~l~~~l--~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~ 207 (303)
.+.-.|-.+.|++.+.|+..+..-. -+|++++|+|||.|-++...+ .++ ...|+|+|+++++++.+.+|..+..+
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~-~e~vlGfDIdpeALEIf~rNaeEfEv- 96 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPK-NESVLGFDIDPEALEIFTRNAEEFEV- 96 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCC-CceEEeeecCHHHHHHHhhchHHhhh-
Confidence 3444566778888888888875422 368899999999999994443 333 37899999999999999999988754
Q ss_pred CccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 208 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 208 ~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
++++.++|+.+..+..+.||..+.+.++
T Consensus 97 ------qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 ------QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ------hhheeeeeccchhccCCeEeeEEecCCC
Confidence 6799999999877777999999999876
No 175
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.77 E-value=4.5e-08 Score=85.00 Aligned_cols=109 Identities=25% Similarity=0.294 Sum_probs=79.5
Q ss_pred HHHHHHccCCCCCE-EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 146 CLQLLEENLKPGMH-ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 146 ~l~~l~~~l~~g~~-VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
+++.|+..+.+... |||||||||..+.++|+.+ |..+....|.++......+..+...++.+ +. .++ ..|+..
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~N-v~-~P~---~lDv~~ 87 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPN-VR-PPL---ALDVSA 87 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcc-cC-CCe---EeecCC
Confidence 45555544555554 9999999999999999998 66788899999999877777777766531 11 123 334443
Q ss_pred C-CC-------CCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEE
Q 022070 225 G-WP-------EFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~-~~-------~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii 260 (303)
. ++ ..+.||.|++..++ +.+++.+.+.|++||.|++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 22 23589999998876 3456788899999999997
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.76 E-value=5.2e-08 Score=94.76 Aligned_cols=97 Identities=27% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 157 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~---g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+..|+|||||+|.++...++.. +...+|++||.++.++...+++++.+++. ++|+++.+|.++...+ +++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-----~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-----DKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-----TTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-----CeEEEEeCcccCCCCC-Ccee
Confidence 4689999999999987766542 23369999999999888887777777665 6899999999885444 6999
Q ss_pred EEEEcCC--------CchHHHHHHhcccCCcEEE
Q 022070 234 AIHVGAA--------APEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 234 ~Iv~~~~--------~~~v~~~~~~~LkpGG~li 259 (303)
+||+-.+ .++.++...+.|||||+++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998542 2344566678999998876
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.75 E-value=1e-08 Score=89.78 Aligned_cols=108 Identities=27% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~ 231 (303)
++.|.+|||.|.|-||.++..+++ |. .+|+.+|.++..++.|+-|- +++.+....++++.||+.+... .+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA-~~VitvEkdp~VLeLa~lNP----wSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GA-IHVITVEKDPNVLELAKLNP----WSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CC-cEEEEEeeCCCeEEeeccCC----CCccccccccEEecccHHHHHhcCCccc
Confidence 567999999999999999999998 42 39999999999999987543 2222223478999999876433 3478
Q ss_pred ccEEEEcCCC---------chHHHHHHhcccCCcEEEEEECCCce
Q 022070 232 YDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGNIFQ 267 (303)
Q Consensus 232 fD~Iv~~~~~---------~~v~~~~~~~LkpGG~lii~v~~~~~ 267 (303)
||+|+-+.+- +++.+++++.|||||+++--+++.-+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 9999988753 45678999999999999999988643
No 178
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.74 E-value=1.3e-08 Score=89.55 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCC-EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~-~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.++. .++|+|||+|..+..+|..+ .+|+|+|+|++|++.|++.....-. ..+..+...+..+..-..++.|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~-----~t~~~ms~~~~v~L~g~e~SVD 102 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYC-----HTPSTMSSDEMVDLLGGEESVD 102 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccc-----cCCccccccccccccCCCccee
Confidence 4444 78999999998888899987 7899999999999999875422111 0122333333333222347899
Q ss_pred EEEEcCCC-----chHHHHHHhcccCCc-EEEE
Q 022070 234 AIHVGAAA-----PEIPQALIDQLKPGG-RMVI 260 (303)
Q Consensus 234 ~Iv~~~~~-----~~v~~~~~~~LkpGG-~lii 260 (303)
+|++.-.+ +...+.+.+.||+.| .+.+
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 99988765 456788999998877 5554
No 179
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.73 E-value=9.1e-08 Score=89.66 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccC-----CccCCCCEEEEEcCCCCC----
Q 022070 156 PGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-----PLLKEGSLSVHVGDGRKG---- 225 (303)
Q Consensus 156 ~g~~VLDIGcG~G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~-----~~~~~~~v~~~~~D~~~~---- 225 (303)
++.+|||+|||-|+ +..+..... ..++|+|++.+.++.|+++.+...-. .... -...++.+|....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i---~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI---KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC---CEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhh
Confidence 78899999999877 555554433 79999999999999999999432210 0011 2467788887632
Q ss_pred -CCC-CCCccEEEEcCCCc----------hHHHHHHhcccCCcEEEEEECCCc
Q 022070 226 -WPE-FAPYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 226 -~~~-~~~fD~Iv~~~~~~----------~v~~~~~~~LkpGG~lii~v~~~~ 266 (303)
+.. ...||+|-+..+++ .+++++.+.|+|||++|..+++..
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 222 25899998888764 346788999999999999988764
No 180
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.73 E-value=1.2e-07 Score=80.91 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~ 228 (303)
...++.+|||+|||+|..+..+|... ...+|+..|.++ .++..+.|++.++. ....++.+...|..+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccc
Confidence 35678899999999999999999984 237999999999 99999999988651 11157788887765422 12
Q ss_pred CCCccEEEEcCCC------chHHHHHHhcccCCcEEEEEECC
Q 022070 229 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 229 ~~~fD~Iv~~~~~------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
..+||+|+....+ +.+.+.+.++|+++|.+++....
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 2589999876543 45667888999999997776543
No 181
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.72 E-value=1e-07 Score=85.34 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=80.5
Q ss_pred ccCCCCcCh-HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc
Q 022070 131 IGYNATISA-PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 209 (303)
Q Consensus 131 ~~~g~~i~~-p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~ 209 (303)
-+.|||+.. |.+...+++... +++++.|||||.|||.+|..+.+.. .+|+++|+++.++....++.......
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~-- 106 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS-- 106 (315)
T ss_pred cccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc--
Confidence 355677643 666666766665 8999999999999999999999985 79999999999999999998775443
Q ss_pred cCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC
Q 022070 210 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 241 (303)
Q Consensus 210 ~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~ 241 (303)
+..+++.+|.... +...||.+|++.+.
T Consensus 107 ---~kLqV~~gD~lK~--d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 ---GKLQVLHGDFLKT--DLPRFDGCVSNLPY 133 (315)
T ss_pred ---ceeeEEecccccC--CCcccceeeccCCc
Confidence 5789999998874 23579999997654
No 182
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=8.1e-08 Score=89.73 Aligned_cols=100 Identities=25% Similarity=0.317 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..+|.+|+|.-||-|+++..+|+... .+|+++|++|..++..++|++.+++. +.++.+++|.++..+..+.+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~-----~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVE-----GRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCcc-----ceeeEEeccHHHhhhccccCC
Confidence 46799999999999999999999843 34999999999999999999999886 459999999998776668899
Q ss_pred EEEEcCCC--chHHHHHHhcccCCcEEEE
Q 022070 234 AIHVGAAA--PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~--~~v~~~~~~~LkpGG~lii 260 (303)
.|+.+... ++....+.+++++||.+.+
T Consensus 259 rIim~~p~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred EEEeCCCCcchhhHHHHHHHhhcCcEEEE
Confidence 99999764 6677889999999998886
No 183
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.71 E-value=3.7e-08 Score=84.82 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=85.3
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022070 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 216 (303)
Q Consensus 137 i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~ 216 (303)
.+...+-..+...+....-+|.+|||+-||||.++..+..+. . .+|+.||.++..+...++|++..+.. +++.
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A-~~v~fVE~~~~a~~~i~~N~~~l~~~-----~~~~ 95 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-A-KSVVFVEKNRKAIKIIKKNLEKLGLE-----DKIR 95 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-G-----GGEE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-C-CeEEEEECCHHHHHHHHHHHHHhCCC-----ccee
Confidence 344445555666665321368899999999999999888874 3 69999999999999999999998764 3689
Q ss_pred EEEcCCCCCCC----CCCCccEEEEcCCCch------HHHHHH--hcccCCcEEEEEECCC
Q 022070 217 VHVGDGRKGWP----EFAPYDAIHVGAAAPE------IPQALI--DQLKPGGRMVIPVGNI 265 (303)
Q Consensus 217 ~~~~D~~~~~~----~~~~fD~Iv~~~~~~~------v~~~~~--~~LkpGG~lii~v~~~ 265 (303)
++..|....+. ...+||+|+.+.+... +++.+. .+|+++|++++.....
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999654331 2378999999998742 233444 6889999999987554
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.69 E-value=8.3e-08 Score=88.09 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
.++.|||+|||+|.++.++|+.. . .+|++||.| +|.+.|++..+.+.+. ++|.++.|...+...+ ++.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A-~~vYAvEAS-~MAqyA~~Lv~~N~~~-----~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-A-KKVYAVEAS-EMAQYARKLVASNNLA-----DRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-c-ceEEEEehh-HHHHHHHHHHhcCCcc-----ceEEEccCccccccCc-hhccEE
Confidence 56799999999999999999984 3 799999965 7899999988887655 7899999998775433 789999
Q ss_pred EEcCCC-----chHHH---HHHhcccCCcEEEEEECCCc-------ee-EEEEEEcCCCCEEEEEeeeEEEeeccccc
Q 022070 236 HVGAAA-----PEIPQ---ALIDQLKPGGRMVIPVGNIF-------QD-LKVVDKNQDGSLSIWSETSVRYVPLTSRD 297 (303)
Q Consensus 236 v~~~~~-----~~v~~---~~~~~LkpGG~lii~v~~~~-------~~-~~~~~~~~~~~~~~~~l~~v~f~Pl~~~~ 297 (303)
++-.+- +.+++ .+.+.|||.|.++=.++..- +. .+.++| .+-|-.....+|...||.+..
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nk--AnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNK--ANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhh--hhhhhhhccccccchhhhhhh
Confidence 998764 34443 35689999999986555420 10 111222 334666666677777766543
No 185
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.68 E-value=3.8e-08 Score=89.90 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=81.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
+.+|..+- .++++.++|+|||-|+-..---+. |- +.++|+||.+..++.|+++.........--.-.+.|+.+|..
T Consensus 107 Ks~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 107 KSVLINLY--TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHH--hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 44444433 688999999999998755444333 22 689999999999999999886433211000025788999976
Q ss_pred C-----CCCCC-CCccEEEEcCCCc----------hHHHHHHhcccCCcEEEEEECCCc
Q 022070 224 K-----GWPEF-APYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 224 ~-----~~~~~-~~fD~Iv~~~~~~----------~v~~~~~~~LkpGG~lii~v~~~~ 266 (303)
. ..+.. .+||+|-|..+++ -++.++.++|||||.+|..+++..
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 3 22222 3499997776552 235788999999999999998864
No 186
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.1e-07 Score=87.16 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=86.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-CC
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-AP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~~ 231 (303)
+.++ ++||-||-|.|..+..+.+.. +-.+++.||+++..++.|++.+........ -++++++.+|+.+..... .+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCc
Confidence 3455 699999999999999999985 558999999999999999999876542211 368999999998765433 47
Q ss_pred ccEEEEcCCC----------chHHHHHHhcccCCcEEEEEECC
Q 022070 232 YDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 232 fD~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
||+|+++..- .+..+.+.+.|+++|+++...+.
T Consensus 150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999998632 35678999999999999987443
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.4e-07 Score=84.99 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022070 138 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 217 (303)
Q Consensus 138 ~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~ 217 (303)
....+...+++... +.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..++..... +++++
T Consensus 14 ~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~--------~n~~v 80 (259)
T COG0030 14 IDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPY--------DNLTV 80 (259)
T ss_pred cCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccc--------cceEE
Confidence 33455677777776 7788999999999999999999996 68999999999999998876532 69999
Q ss_pred EEcCCCCCCCCC-CCccEEEEcCCC
Q 022070 218 HVGDGRKGWPEF-APYDAIHVGAAA 241 (303)
Q Consensus 218 ~~~D~~~~~~~~-~~fD~Iv~~~~~ 241 (303)
+.+|+....... ..++.|+++-+.
T Consensus 81 i~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 81 INGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred EeCchhcCcchhhcCCCEEEEcCCC
Confidence 999998754331 168999998765
No 188
>PRK04148 hypothetical protein; Provisional
Probab=98.66 E-value=2.3e-07 Score=75.49 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022070 155 KPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~f 232 (303)
.++++|+|||||+|. .+..|++. | ..|+++|+++..++.++++ .++++.+|..+.... -+.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcC
Confidence 356799999999997 88888866 4 7999999999998888664 467889998874332 2679
Q ss_pred cEEEEcCCCchHHHHHHhcccC-CcE-EEEEECC
Q 022070 233 DAIHVGAAAPEIPQALIDQLKP-GGR-MVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~Lkp-GG~-lii~v~~ 264 (303)
|+|++.-+-+++...+.++-+. |.- ++.|+.+
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999888887666554433 333 3334443
No 189
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.65 E-value=2e-07 Score=87.98 Aligned_cols=104 Identities=24% Similarity=0.312 Sum_probs=86.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CC-C
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EF-A 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~-~ 230 (303)
.++||.||||.++-+|+-|.++|..+..++.+++.|.+.+.+...+.++.+.|+ .+..+...|..+... .. +
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFPG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccCc
Confidence 379999999999999999999999999999999999999999999999999886 477788888875321 11 4
Q ss_pred CccEEEEcCCCc----------------------------hHHHHHHhcccCCcEEEEEE
Q 022070 231 PYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 231 ~fD~Iv~~~~~~----------------------------~v~~~~~~~LkpGG~lii~v 262 (303)
+||+|..++++. +++..+.+++++||+|+.+.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 799999988762 22356778999999999854
No 190
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.65 E-value=3.4e-07 Score=80.16 Aligned_cols=112 Identities=27% Similarity=0.372 Sum_probs=79.1
Q ss_pred HHHHHHHH-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 144 ATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 144 ~~~l~~l~-~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
+.++.-++ ..+++|.+||-+|+.+|....+++...++++.|++||.|+...+..-.-+++. .||--+..|+
T Consensus 60 Aai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------~NIiPIl~DA 131 (229)
T PF01269_consen 60 AAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------PNIIPILEDA 131 (229)
T ss_dssp HHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--------TTEEEEES-T
T ss_pred HHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--------CceeeeeccC
Confidence 33433343 35789999999999999999999999998999999999996554443333332 6999999999
Q ss_pred CCCC---CCCCCccEEEEcCCCch----HHHHHHhcccCCcEEEEEEC
Q 022070 223 RKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 223 ~~~~---~~~~~fD~Iv~~~~~~~----v~~~~~~~LkpGG~lii~v~ 263 (303)
+... ..-+..|+|+++.+-+. +..++...||+||.+++.+-
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 8632 12368999999987654 34677788999999999774
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.65 E-value=2.1e-07 Score=77.68 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=92.8
Q ss_pred CcCCCCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 124 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 124 y~d~~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
|.+.+..+| .-..+.+.+...|...+. ...|.-|||+|.|+|.+|..+..+.-+...++++|+|++.+....+..
T Consensus 19 wi~~PrtVG-aI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 19 WIDNPRTVG-AILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred HhcCCceee-eecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 445566666 233455667777888776 778889999999999999888877555679999999999998877654
Q ss_pred hccCCccCCCCEEEEEcCCCCCC-----CCCCCccEEEEcCCCc--------hHHHHHHhcccCCcEEEE
Q 022070 204 SAAAPLLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 204 ~~~~~~~~~~~v~~~~~D~~~~~-----~~~~~fD~Iv~~~~~~--------~v~~~~~~~LkpGG~lii 260 (303)
+.+.++.||+.+.. .....||.|+|..++. .+.+.+...|.+||.++.
T Consensus 94 ---------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 94 ---------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ---------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 35668888876532 1225799999998763 345778888999998885
No 192
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.62 E-value=1.4e-07 Score=83.87 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~-A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.++.+|||+|||+|+++..+++. |. .+|+|+|++++++.. .+++.+ + ..++..|++ ..+..+.+++...+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~~l~~~~~---v-~~~~~~ni~--~~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAEKLRQDER---V-KVLERTNIR--YVTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHhcCCC---e-eEeecCCcc--cCCHhHcCCCceeee
Confidence 46789999999999999999997 43 689999999987765 222110 0 001112332 111112222334677
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEEEEECCC
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+++++.. .++..+.+.|+| |.+++.+-..
T Consensus 146 vsfiS~~--~~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 146 VSFISLI--SILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred EEEeehH--hHHHHHHHHhCc-CeEEEEcChH
Confidence 6665543 367889999999 8888866544
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.62 E-value=3.2e-07 Score=82.10 Aligned_cols=90 Identities=24% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..+..+|+|||+|.|.++..+++.+ |+.+++..|. |+.++.+++ . ++|+++.+|..+.++. +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f~~~P~---~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFFDPLPV---AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TTTCCSS---ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c---------cccccccccHHhhhcc---cc
Confidence 5566799999999999999999997 6789999998 888888877 1 6999999999965543 99
Q ss_pred EEEEcCCCc--------hHHHHHHhcccCC--cEEEE
Q 022070 234 AIHVGAAAP--------EIPQALIDQLKPG--GRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~--------~v~~~~~~~LkpG--G~lii 260 (303)
+|+....++ .+++++.+.|+|| |++++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 999988774 3567889999999 99997
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.61 E-value=9.4e-08 Score=88.03 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|-+...+++.+. ++++..++|.+||.|+.+..+++.++++++|+|+|.++++++.|++++.. . +++++++
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~------~ri~~i~ 74 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F------GRFTLVH 74 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C------CcEEEEe
Confidence 445677788876 68889999999999999999999986678999999999999999988754 1 5899999
Q ss_pred cCCCCCC---CC-CCCccEEEEcCC
Q 022070 220 GDGRKGW---PE-FAPYDAIHVGAA 240 (303)
Q Consensus 220 ~D~~~~~---~~-~~~fD~Iv~~~~ 240 (303)
+|..+.. +. ..++|.|+.+..
T Consensus 75 ~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 75 GNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCHHHHHHHHHcCCCccCEEEECCC
Confidence 9987632 11 127999987754
No 195
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.59 E-value=2.9e-07 Score=85.43 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=83.7
Q ss_pred CCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022070 134 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA 207 (303)
Q Consensus 134 g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~------g~~~~V~gvDis~~~l~~A~~~~~~~~~~ 207 (303)
|+..+...+...+.+.+. ..++.+|+|.+||+|.+...+.+.. ....+++|+|+++..+..|+-++.-.+..
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 455555666677777775 6788899999999999988887743 23479999999999999999887655432
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEEcCCCc---------------------------hHHHHHHhcccCCcEE
Q 022070 208 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP---------------------------EIPQALIDQLKPGGRM 258 (303)
Q Consensus 208 ~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv~~~~~~---------------------------~v~~~~~~~LkpGG~l 258 (303)
..+..+..+|....... ...||+|+++.++- .....+.+.|++||++
T Consensus 104 ----~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 104 ----NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp ----CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ----cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 12346888887653322 36899999997651 1235678899999998
Q ss_pred EEEECC
Q 022070 259 VIPVGN 264 (303)
Q Consensus 259 ii~v~~ 264 (303)
++.+++
T Consensus 180 ~~Ilp~ 185 (311)
T PF02384_consen 180 AIILPN 185 (311)
T ss_dssp EEEEEH
T ss_pred eEEecc
Confidence 876664
No 196
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.57 E-value=6e-06 Score=70.82 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=89.1
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022070 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 216 (303)
Q Consensus 137 i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~ 216 (303)
.+...+...+...+...--.|.++||+-+|||.++..++.+.. .+++.||.+...+...++|++..+.. .++.
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~ 96 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLE-----GEAR 96 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCc-----cceE
Confidence 3333444444455542114578999999999999999999853 79999999999999999999988754 5788
Q ss_pred EEEcCCCCCC---CCCCCccEEEEcCCCch-HH----HH----HHhcccCCcEEEEEECC
Q 022070 217 VHVGDGRKGW---PEFAPYDAIHVGAAAPE-IP----QA----LIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 217 ~~~~D~~~~~---~~~~~fD~Iv~~~~~~~-v~----~~----~~~~LkpGG~lii~v~~ 264 (303)
++..|+...+ ...++||+|+.+.++.. +. .. -..+|+|+|.+++..+.
T Consensus 97 ~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 97 VLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 8888987432 22245999999999862 22 11 23579999999997664
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.57 E-value=2.4e-07 Score=83.41 Aligned_cols=106 Identities=28% Similarity=0.328 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CC-Cc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~-~f 232 (303)
.+.++||-||-|.|..+..+.+.. +..+++.||+++..++.|++.+...... ...++++++.+|+...+.. .+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcc
Confidence 356799999999999999998763 4479999999999999999987654321 2336899999998764322 24 89
Q ss_pred cEEEEcCCC----------chHHHHHHhcccCCcEEEEEEC
Q 022070 233 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 233 D~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+|+++..- .+..+.+.+.|+|||.+++..+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 999987642 3556889999999999998664
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.57 E-value=7.4e-08 Score=81.07 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=56.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--C-CccE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~-~fD~ 234 (303)
..|+|+.||.|+.+..+|+.. .+|++||+++..++.|+.|+.-.|+. ++|+++++|..+..... . .||+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~-----~~I~~i~gD~~~~~~~~~~~~~~D~ 72 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA-----DNIDFICGDFFELLKRLKSNKIFDV 72 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G-----GGEEEEES-HHHHGGGB------SE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCCHHHHHhhccccccccE
Confidence 369999999999999999986 69999999999999999999998875 69999999987644321 1 2899
Q ss_pred EEEcCC
Q 022070 235 IHVGAA 240 (303)
Q Consensus 235 Iv~~~~ 240 (303)
|+++.+
T Consensus 73 vFlSPP 78 (163)
T PF09445_consen 73 VFLSPP 78 (163)
T ss_dssp EEE---
T ss_pred EEECCC
Confidence 998864
No 199
>PRK00536 speE spermidine synthase; Provisional
Probab=98.54 E-value=6.4e-07 Score=81.17 Aligned_cols=101 Identities=12% Similarity=-0.047 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
..++||-||.|-|..+..+.+. . .+|+.||++++.++.+++.+..... .+..++++++.. ..+. ..+.||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~~--~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLDL--DIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhhc--cCCcCCEE
Confidence 3479999999999999999998 3 4999999999999999997765432 244467777752 2111 12689999
Q ss_pred EEcCCC-chHHHHHHhcccCCcEEEEEECC
Q 022070 236 HVGAAA-PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 236 v~~~~~-~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+++... ++..+.+.+.|+|||.++...+.
T Consensus 144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 144 ICLQEPDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EEcCCCChHHHHHHHHhcCCCcEEEECCCC
Confidence 999544 56778999999999999985544
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.51 E-value=1.9e-06 Score=74.28 Aligned_cols=114 Identities=24% Similarity=0.246 Sum_probs=87.4
Q ss_pred HHHHHHHHc--cCCCCC-EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 144 ATCLQLLEE--NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 144 ~~~l~~l~~--~l~~g~-~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
.++++.+.. .+.... +++|||+|.|.=+..+|-.. |+.+++.+|.+...+.+.+.-....++ +|++++.+
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~ 105 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVING 105 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEe
Confidence 345555432 233333 89999999999999999886 778999999999999999998888776 58999999
Q ss_pred CCCCCCCCCCCccEEEEcCCC--chHHHHHHhcccCCcEEEEEECCC
Q 022070 221 DGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 221 D~~~~~~~~~~fD~Iv~~~~~--~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.+.+ ....+.||.|++-+.. ..+.+-+...+++||++++.-+..
T Consensus 106 R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 106 RAEE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp -HHH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred eecc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9877 3344899999998765 466778889999999999977653
No 201
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.49 E-value=7.7e-07 Score=79.69 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
...++||||+|.|..+..++..+ .+|++.|.|+.|....++ . ..+++..+--. ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----k---------g~~vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----K---------GFTVLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----C---------CCeEEehhhhh--ccCCceEEE
Confidence 35689999999999999999998 689999999999655443 2 33333222211 123589999
Q ss_pred EEcCCCc------hHHHHHHhcccCCcEEEEEEC
Q 022070 236 HVGAAAP------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 236 v~~~~~~------~v~~~~~~~LkpGG~lii~v~ 263 (303)
.|-..+. .+++.+++.|+|+|++++.+-
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9877653 457899999999999998664
No 202
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.47 E-value=5.2e-06 Score=76.33 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred CEEEEEcCCccHH----HHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHH--------------h------------
Q 022070 158 MHALDIGSGTGYL----TACFALMVGP---QGRAVGVEHIPELVVSSIQNIEK--------------S------------ 204 (303)
Q Consensus 158 ~~VLDIGcG~G~~----t~~lA~~~g~---~~~V~gvDis~~~l~~A~~~~~~--------------~------------ 204 (303)
-+|+..||++|-= +..+.+..+. +.+|+|+|+|+..++.|++-.-. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999999999953 3333343221 36899999999999999864200 0
Q ss_pred ccCCccCCCCEEEEEcCCCCC-CCCCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEEEECCC
Q 022070 205 AAAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 205 ~~~~~~~~~~v~~~~~D~~~~-~~~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.+.+.+. ..|+|...|..+. ++..+.||+|+|-.++ ..+.+.+.+.|+|||+|++.....
T Consensus 197 ~v~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 197 RVRQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred EEChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 0111111 4688899998773 3335789999997654 345678899999999999765544
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.47 E-value=2.2e-06 Score=85.35 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCCCcChHHHHHHHHHHHHccCC-----CCCEEEEEcCCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHH
Q 022070 133 YNATISAPHMHATCLQLLEENLK-----PGMHALDIGSGTGYLTACFALMVGP-------QGRAVGVEHIPELVVSSIQN 200 (303)
Q Consensus 133 ~g~~i~~p~~~~~~l~~l~~~l~-----~g~~VLDIGcG~G~~t~~lA~~~g~-------~~~V~gvDis~~~l~~A~~~ 200 (303)
.|+..+.+.+...+++.+..... ...+|||.|||+|.+...+++.+.. ...++|+|+++..++.++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 46777888888888887642211 3458999999999999888877621 25789999999999999999
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCC----C-CCCCCccEEEEcCCC
Q 022070 201 IEKSAAAPLLKEGSLSVHVGDGRKG----W-PEFAPYDAIHVGAAA 241 (303)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~D~~~~----~-~~~~~fD~Iv~~~~~ 241 (303)
+...+. ..+.+...|.... . ...+.||+|+.+.+.
T Consensus 83 l~~~~~------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFAL------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcCC------CCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876541 1344555553321 0 122689999998765
No 204
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=1.9e-06 Score=85.32 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCCCCc
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~--~~~~~~f 232 (303)
..+..+||||||.|.+...+|+.. |+..++|+|++...+..+.+.....++ .|+.++.+|+... ....+++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv 418 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSL 418 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCcccc
Confidence 345689999999999999999995 778999999999999988888777655 5898888876421 1233789
Q ss_pred cEEEEcCCC--------------chHHHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|.|+++.+- +..++.+.+.|||||.+.+....
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999998764 23457889999999999987765
No 205
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.41 E-value=5.8e-07 Score=78.59 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
..++||.|+|-|..|..+....- .+|..+|..+..++.|++.+....- ...++.+....+..|+.++||+|.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~------~v~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNP------RVGEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGC------CEEEEEES-GGG----TT-EEEEE
T ss_pred cceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCC------CcceEEecCHhhccCCCCcEeEEE
Confidence 46899999999999986643332 6999999999999999987654211 234666666666555557999999
Q ss_pred EcCCCchH--------HHHHHhcccCCcEEEEEECCCceeEEEEEEcCCCCEEE
Q 022070 237 VGAAAPEI--------PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSI 282 (303)
Q Consensus 237 ~~~~~~~v--------~~~~~~~LkpGG~lii~v~~~~~~~~~~~~~~~~~~~~ 282 (303)
+...+-|+ ++++...|+|+|.+++=-+........+++. |.++.+
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~-DsSvTR 180 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE-DSSVTR 180 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT-TTEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc-cCeeec
Confidence 98876443 5788899999999998444333334455543 665554
No 206
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.37 E-value=1.8e-06 Score=82.20 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=81.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 236 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~Iv 236 (303)
-+|||..||+|..+..++...+.-.+|+++|+++..++.+++|++.+++ .++++..+|+...+.. ...||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 4899999999999999998742226899999999999999999988765 3789999998764432 25799999
Q ss_pred EcCCCc--hHHHHHHhcccCCcEEEEEE
Q 022070 237 VGAAAP--EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 237 ~~~~~~--~v~~~~~~~LkpGG~lii~v 262 (303)
.+.--. ...+.+.+.+++||++.+..
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 998332 56788999999999999964
No 207
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.37 E-value=1.7e-06 Score=75.27 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=64.0
Q ss_pred CCEEEEEcCCccHH----HHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHH--------------HHhc---------
Q 022070 157 GMHALDIGSGTGYL----TACFALMV----GPQGRAVGVEHIPELVVSSIQNI--------------EKSA--------- 205 (303)
Q Consensus 157 g~~VLDIGcG~G~~----t~~lA~~~----g~~~~V~gvDis~~~l~~A~~~~--------------~~~~--------- 205 (303)
.-+|+..||++|.= +..+.+.. +.+.+++|+|+|+.+++.|++-. .+.-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 45899999999953 33333311 11369999999999999997422 1110
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEEEECCC
Q 022070 206 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 206 ~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+.+.+. ..|.|...|..+..+..+.||+|+|-.++ ..+.+.+.+.|+|||.|++.....
T Consensus 112 v~~~lr-~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 112 VKPELR-KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES 178 (196)
T ss_dssp E-HHHH-TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred EChHHc-CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence 000011 47999999998844555899999999876 456788899999999999855443
No 208
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.35 E-value=1.2e-06 Score=73.66 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCch------HHHHHHhcccCCcEE
Q 022070 185 VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRM 258 (303)
Q Consensus 185 ~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~~------v~~~~~~~LkpGG~l 258 (303)
+|+|+|++|++.|+++....+. -...+++++++|+.+.....++||.|++...+++ .++++.+.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999999999887653221 0114799999999876555578999999876644 467899999999999
Q ss_pred EEE
Q 022070 259 VIP 261 (303)
Q Consensus 259 ii~ 261 (303)
++.
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 874
No 209
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.8e-06 Score=83.59 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=95.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC----
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF---- 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---- 229 (303)
+..+..++|+.||||.++..+|+.. .+|+|||+++..++.|++|...+++ .|.+|++|.+.+..+..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~gqaE~~~~sl~~~~ 451 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI------SNATFIVGQAEDLFPSLLTPC 451 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc------cceeeeecchhhccchhcccC
Confidence 7788899999999999999999987 7999999999999999999999888 49999999665543321
Q ss_pred -CCcc-EEEEcCCC---c-hHHHHHHhcccCCcEEEEEECCCc--ee-EEE----EEEcCCCCEEEEEeeeEEEeecccc
Q 022070 230 -APYD-AIHVGAAA---P-EIPQALIDQLKPGGRMVIPVGNIF--QD-LKV----VDKNQDGSLSIWSETSVRYVPLTSR 296 (303)
Q Consensus 230 -~~fD-~Iv~~~~~---~-~v~~~~~~~LkpGG~lii~v~~~~--~~-~~~----~~~~~~~~~~~~~l~~v~f~Pl~~~ 296 (303)
+.=+ +++++.+- + .+++.+.+.-.+--.+++++.... .. ... ..+...|.|......+|.-+|-+++
T Consensus 452 ~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~h 531 (534)
T KOG2187|consen 452 CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHTPH 531 (534)
T ss_pred CCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCCCc
Confidence 2335 44555433 2 233444444346666777765431 11 111 1222355688888899999998876
Q ss_pred ch
Q 022070 297 DA 298 (303)
Q Consensus 297 ~~ 298 (303)
-|
T Consensus 532 ~E 533 (534)
T KOG2187|consen 532 CE 533 (534)
T ss_pred CC
Confidence 54
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.34 E-value=6.1e-06 Score=84.96 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhC---------------------------------------
Q 022070 139 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--------------------------------------- 179 (303)
Q Consensus 139 ~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g--------------------------------------- 179 (303)
.+.+.+.++.... ..+++..++|.+||+|.+.+.+|....
T Consensus 174 ~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 174 KENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred cHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 3455555554332 125678999999999999988876421
Q ss_pred --CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEEcCCCc----------hHH
Q 022070 180 --PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----------EIP 245 (303)
Q Consensus 180 --~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv~~~~~~----------~v~ 245 (303)
...+++|+|+++.+++.|++|+...++. +.+++..+|+.+.... .+.||+|++|.++- .+.
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~-----~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVA-----ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCC-----cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 1137999999999999999999998875 5689999998775332 24699999998751 122
Q ss_pred HHH---HhcccCCcEEEEEECCC
Q 022070 246 QAL---IDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 246 ~~~---~~~LkpGG~lii~v~~~ 265 (303)
+.+ .+...+|+.+++-.++.
T Consensus 328 ~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCH
Confidence 222 23334899998877653
No 211
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=8e-07 Score=78.41 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=69.1
Q ss_pred EEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CCCCCCCc
Q 022070 159 HALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPEFAPY 232 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~--~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~~~~~f 232 (303)
++||||||-|...-.+.+.. ++ -+|+++|.|+.+++..+++..... .++.....|... .....+.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCcc
Confidence 79999999999998888764 44 699999999999999988754321 244444445443 22334789
Q ss_pred cEEEEcCCC--------chHHHHHHhcccCCcEEEE
Q 022070 233 DAIHVGAAA--------PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~--------~~v~~~~~~~LkpGG~lii 260 (303)
|.|++...+ ..+++++.++|||||.+++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence 988665443 2346889999999999997
No 212
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.6e-06 Score=73.21 Aligned_cols=93 Identities=28% Similarity=0.372 Sum_probs=72.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-----
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----- 227 (303)
.++++++|+|+|+-+|+.+..+++..++.++|+|+|+.|-- ...+|.++.+|.++...
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHH
Confidence 36889999999999999999999999888889999997541 11468999999876321
Q ss_pred ---CCCCccEEEEcCCC--------ch---------HHHHHHhcccCCcEEEEEE
Q 022070 228 ---EFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 228 ---~~~~fD~Iv~~~~~--------~~---------v~~~~~~~LkpGG~lii~v 262 (303)
...++|+|+++.+- .| .++-+...|+|||.+++.+
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 12457999999764 11 2355678999999999866
No 213
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.28 E-value=9.2e-06 Score=74.02 Aligned_cols=103 Identities=21% Similarity=0.266 Sum_probs=66.9
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 158 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 158 ~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
.+|+=||||+ -..+..+++..+....|+++|+++++++.+++-++ ..++. ..+.++.+|..+...+...||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-----CCeEEEecchhccccccccCCEE
Confidence 4999999998 66778888777666899999999999999998777 44443 58999999987643344789999
Q ss_pred EEcCCC-------chHHHHHHhcccCCcEEEEEECCC
Q 022070 236 HVGAAA-------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 236 v~~~~~-------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
+..+.. ..+++.+.+.++||.++++=..++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 887644 467899999999999999854443
No 214
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.27 E-value=1.9e-05 Score=71.86 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=75.7
Q ss_pred CCEEEEEcCCccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHH-----hcc-----------------
Q 022070 157 GMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK-----SAA----------------- 206 (303)
Q Consensus 157 g~~VLDIGcG~G~----~t~~lA~~~g~----~~~V~gvDis~~~l~~A~~~~~~-----~~~----------------- 206 (303)
.-+|+-+||+||- ++..+.+.++. ..+++|+|+|...++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4589999999993 45555555532 47999999999999999642211 111
Q ss_pred --CCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC--------chHHHHHHhcccCCcEEEEEECC
Q 022070 207 --APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 207 --~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
.+.+. ..|.|...|..+..+..+.||+|+|-.++ ..+.+.+...|+|||.|++-...
T Consensus 177 ~v~~~ir-~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 177 RVKEELR-KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEChHHh-cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 00011 46788888887765444789999998765 46678899999999999974443
No 215
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.26 E-value=1.7e-07 Score=73.01 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=39.9
Q ss_pred EEEcCCccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022070 161 LDIGSGTGYLTACFALMVGPQG--RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 236 (303)
Q Consensus 161 LDIGcG~G~~t~~lA~~~g~~~--~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv 236 (303)
||||+..|..+..+++.+.+.. +++++|..+. .+.+++.+++.+.. .+++++.++..+..+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-----~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-----DRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-----CeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6999999999999998876554 7999999986 33344444444433 5799999998654322 26899999
Q ss_pred EcCCC--ch---HHHHHHhcccCCcEEEE
Q 022070 237 VGAAA--PE---IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 237 ~~~~~--~~---v~~~~~~~LkpGG~lii 260 (303)
+++.- +. -++.+.+.|+|||.+++
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99963 33 34678889999999885
No 216
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.26 E-value=4.6e-06 Score=73.07 Aligned_cols=95 Identities=24% Similarity=0.361 Sum_probs=67.3
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcC
Q 022070 160 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 239 (303)
Q Consensus 160 VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~ 239 (303)
|.||||--|++..+|.+. +...+++++|+++.-++.|++++...++. ++++++++|..+.+.+.+..|.|++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-----~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE-----DRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T-----TTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc-----ccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999998 45468999999999999999999998876 689999999988766544489998888
Q ss_pred CCchH----HHHHHhcccCCcEEEE
Q 022070 240 AAPEI----PQALIDQLKPGGRMVI 260 (303)
Q Consensus 240 ~~~~v----~~~~~~~LkpGG~lii 260 (303)
|--.. ++.....++....||+
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEE
Confidence 76433 3333344444445665
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=9.8e-06 Score=71.00 Aligned_cols=118 Identities=27% Similarity=0.376 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc---CCccCCCCEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSLS 216 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~---~~~~~~~~v~ 216 (303)
+.....+++.+. +++++.++|+|||.|.....+|...+ -.+++|||+.+...+.|++......- .......+++
T Consensus 28 ~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 28 PEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred HHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 444566777665 78999999999999999888887764 24699999999999888764432210 0012235788
Q ss_pred EEEcCCCCCCCC---CCCccEEEEcCCC--chHH---HHHHhcccCCcEEEE
Q 022070 217 VHVGDGRKGWPE---FAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 260 (303)
Q Consensus 217 ~~~~D~~~~~~~---~~~fD~Iv~~~~~--~~v~---~~~~~~LkpGG~lii 260 (303)
+..+|..+.... ....|+|+++..+ +.+. ......||+|.++|.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 888987652100 1346999998654 2332 445567899988764
No 218
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.2e-05 Score=69.23 Aligned_cols=112 Identities=27% Similarity=0.316 Sum_probs=85.8
Q ss_pred HHHHHHHHH-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022070 143 HATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 221 (303)
Q Consensus 143 ~~~~l~~l~-~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D 221 (303)
.+.++.-++ ..+++|.+||-+|+.+|....+++...+ .+.+++||.|+......-..+.+. +|+--+++|
T Consensus 62 aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--------~Ni~PIL~D 132 (231)
T COG1889 62 AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--------PNIIPILED 132 (231)
T ss_pred HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--------CCceeeecc
Confidence 345555554 3578999999999999999999999987 699999999987765555444443 588889999
Q ss_pred CCCCCCC---CCCccEEEEcCCCch----HHHHHHhcccCCcEEEEEEC
Q 022070 222 GRKGWPE---FAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 222 ~~~~~~~---~~~fD~Iv~~~~~~~----v~~~~~~~LkpGG~lii~v~ 263 (303)
++....- -+..|+|+.+.+-+. +..++...||+||.+++.+-
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 9864321 267999999987754 34667778999998887654
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.21 E-value=5.3e-06 Score=75.42 Aligned_cols=93 Identities=22% Similarity=0.162 Sum_probs=74.0
Q ss_pred CcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022070 136 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 215 (303)
Q Consensus 136 ~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v 215 (303)
.+..+.+...+++.+. +.++..|||||+|+|.+|..+++.. .+++++|+++.+++..++++... .++
T Consensus 12 FL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~--------~~~ 78 (262)
T PF00398_consen 12 FLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASN--------PNV 78 (262)
T ss_dssp EEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTC--------SSE
T ss_pred eeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhc--------ccc
Confidence 3456788888888886 6789999999999999999999985 79999999999999998876522 589
Q ss_pred EEEEcCCCCCCCCC---CCccEEEEcCCC
Q 022070 216 SVHVGDGRKGWPEF---APYDAIHVGAAA 241 (303)
Q Consensus 216 ~~~~~D~~~~~~~~---~~fD~Iv~~~~~ 241 (303)
+++.+|+.+..... .....|+++-+.
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred eeeecchhccccHHhhcCCceEEEEEecc
Confidence 99999998743321 245577887665
No 220
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.16 E-value=4.5e-06 Score=71.11 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=74.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
+.+.|+|+|+|.++..+|+.. .+|++||.+|.....|++|+.-.+. .|++++.+|+++... +..|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccccccc--cccceeHH
Confidence 689999999999999999985 7999999999999999999866554 699999999988643 56788876
Q ss_pred cCC--------CchHHHHHHhcccCCcEEE
Q 022070 238 GAA--------APEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 238 ~~~--------~~~v~~~~~~~LkpGG~li 259 (303)
-.. .-.++..+.+.||.++.++
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 431 1235577788888888876
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=1.5e-05 Score=70.16 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC-ccEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAI 235 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~-fD~I 235 (303)
+.+++|||+|.|.=+..+|-. .|+.+|+-+|-....+.+.++-..+.++ +|++++++.+.+.... .. ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~-~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQE-KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccc-cccCcEE
Confidence 589999999999999999965 4778899999999999999988888776 5899999998775443 23 9999
Q ss_pred EEcCCC--chHHHHHHhcccCCcEEEEEE
Q 022070 236 HVGAAA--PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 236 v~~~~~--~~v~~~~~~~LkpGG~lii~v 262 (303)
.+-+.. ..+.+-+..++|+||.+++..
T Consensus 140 tsRAva~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred EeehccchHHHHHHHHHhcccCCcchhhh
Confidence 988654 566778889999999987533
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.16 E-value=1.4e-06 Score=74.49 Aligned_cols=91 Identities=30% Similarity=0.378 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---------CC
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---------GW 226 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---------~~ 226 (303)
++.+|||+||++|+++.++.++.++.++|+|+|+.+.. .. .++..+.+|..+ ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~------~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL------QNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc------cceeeeecccchhhHHHhhhhhc
Confidence 34899999999999999999997556899999998760 00 244444555332 11
Q ss_pred C-CCCCccEEEEcCCC--------ch---------HHHHHHhcccCCcEEEEEEC
Q 022070 227 P-EFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 227 ~-~~~~fD~Iv~~~~~--------~~---------v~~~~~~~LkpGG~lii~v~ 263 (303)
. ..++||+|++++.. .+ .+..+.+.|+|||.+++-+-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1 12689999999842 11 12345578999999998553
No 223
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.11 E-value=7.5e-05 Score=70.64 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCC-------------------------------Cc-----
Q 022070 139 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-------------------------------QG----- 182 (303)
Q Consensus 139 ~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~-------------------------------~~----- 182 (303)
.+.+.+.++..-. .+++..++|-=||+|.+.+.+|..... .+
T Consensus 176 ketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 176 KETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred hHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 3444444444433 677789999999999999999988521 11
Q ss_pred --EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCC--------------chHHH
Q 022070 183 --RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------PEIPQ 246 (303)
Q Consensus 183 --~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~--------------~~v~~ 246 (303)
.++|+|+++.+++.|+.|....|+. +.|+|.++|+.+..+..+.+|+||+|.+. ..+-+
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~-----d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVG-----DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCC-----ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3779999999999999999999986 78999999998765544789999999875 12224
Q ss_pred HHHhcccCCcEEEEEECC
Q 022070 247 ALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 247 ~~~~~LkpGG~lii~v~~ 264 (303)
.+.+.++-.++.++....
T Consensus 329 ~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 329 TLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHhcCCceEEEEccH
Confidence 566778888888886554
No 224
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.08 E-value=2.4e-05 Score=68.42 Aligned_cols=102 Identities=26% Similarity=0.357 Sum_probs=80.9
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.++.+.++.||||--+|+..++.+. ++...+++.|+++..++.|.+++.+.++. +.+++..+|....+.....+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~-----~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS-----ERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc-----ceEEEeccCCccccCccCCc
Confidence 3567778999999999999999998 46679999999999999999999998876 78999999997776665689
Q ss_pred cEEEEcCCCch----HHHHHHhcccCCcEEEE
Q 022070 233 DAIHVGAAAPE----IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~~~----v~~~~~~~LkpGG~lii 260 (303)
|.|++.++--. ++++-.+.|+.=-++++
T Consensus 87 d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 87 DVIVIAGMGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence 99999887643 33444444443334554
No 225
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.07 E-value=7.7e-05 Score=69.61 Aligned_cols=108 Identities=9% Similarity=0.124 Sum_probs=76.2
Q ss_pred HHccCCCCCEEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCC
Q 022070 150 LEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRK 224 (303)
Q Consensus 150 l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~---~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~--~~~D~~~ 224 (303)
+...+.++..++|+|||+|..+..+.+.+.. ..+++++|+|.+.++.+.+++..... +.+++ +++|+.+
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGTYDD 143 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEecHHH
Confidence 3334677889999999999998887776632 36799999999999999998873221 34555 8898866
Q ss_pred CCC---C---CCCccEEEEcC-CC--------chHHHHHHh-cccCCcEEEEEEC
Q 022070 225 GWP---E---FAPYDAIHVGA-AA--------PEIPQALID-QLKPGGRMVIPVG 263 (303)
Q Consensus 225 ~~~---~---~~~fD~Iv~~~-~~--------~~v~~~~~~-~LkpGG~lii~v~ 263 (303)
.+. . .....+|+.-+ .+ ..+++.+.+ .|+|||.|++.+.
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 421 1 12356665444 22 234567778 9999999999765
No 226
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.06 E-value=0.00014 Score=66.36 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=78.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--C-CCCCc
Q 022070 157 GMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--P-EFAPY 232 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~-~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~-~~~~f 232 (303)
.-+||||.||.|....-+....+. ..++.-.|+|+..++..++.+++.++. +-++|.++|+.+.. . .....
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----cceEEEecCCCCHhHhhccCCCC
Confidence 458999999999987777776543 268999999999999999999998885 34499999998742 1 22457
Q ss_pred cEEEEcCCCchH---------HHHHHhcccCCcEEEEEE
Q 022070 233 DAIHVGAAAPEI---------PQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 233 D~Iv~~~~~~~v---------~~~~~~~LkpGG~lii~v 262 (303)
|++++++.++-+ +.-+.+.+.|||.+|..-
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999876533 244667899999999844
No 227
>PRK10742 putative methyltransferase; Provisional
Probab=98.02 E-value=2.3e-05 Score=70.18 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=71.8
Q ss_pred HHHHHHHccCCCCC--EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC---CCEEEEE
Q 022070 145 TCLQLLEENLKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE---GSLSVHV 219 (303)
Q Consensus 145 ~~l~~l~~~l~~g~--~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~---~~v~~~~ 219 (303)
.+++.+. +++|. +|||.-+|+|..+..+|.+ | ++|+++|.++......++++........+.. .+++++.
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~-G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 3455554 67887 9999999999999999988 4 6799999999999999998887421111111 4789999
Q ss_pred cCCCCCCCC-CCCccEEEEcCCCch
Q 022070 220 GDGRKGWPE-FAPYDAIHVGAAAPE 243 (303)
Q Consensus 220 ~D~~~~~~~-~~~fD~Iv~~~~~~~ 243 (303)
+|..+.+.. ...||+|+.+.++++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 998765432 247999999999854
No 228
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.02 E-value=1.8e-05 Score=69.88 Aligned_cols=101 Identities=25% Similarity=0.349 Sum_probs=79.7
Q ss_pred ccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022070 152 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE----LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 227 (303)
Q Consensus 152 ~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~----~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 227 (303)
.+++||.+||-+|+++|....+.+...|+.+-|+++|.|.. ++..|+++ .||.-+..|++....
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~K 219 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAK 219 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchh
Confidence 36899999999999999999999999999999999999864 44445443 577778888876432
Q ss_pred C---CCCccEEEEcCCCchHH----HHHHhcccCCcEEEEEECC
Q 022070 228 E---FAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 228 ~---~~~fD~Iv~~~~~~~v~----~~~~~~LkpGG~lii~v~~ 264 (303)
. -+..|+||++.+-+... -++.-.||+||-+++++-.
T Consensus 220 YRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 220 YRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 1 26789999998775543 3566789999999998754
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.02 E-value=5.4e-05 Score=62.26 Aligned_cols=102 Identities=28% Similarity=0.388 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~---g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+..+|+|+|||.|+++..++..+ .++.+|+++|.++..++.+.++.++.+.. . ..++.+..++..+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--L-EKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--h-hccchhhccchhhhcc-cCC
Confidence 567799999999999999999933 24479999999999999999988776511 0 0355565555443221 245
Q ss_pred ccEEEEcCCCc----hHHHHHHhcccCCcEEEEEEC
Q 022070 232 YDAIHVGAAAP----EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 232 fD~Iv~~~~~~----~v~~~~~~~LkpGG~lii~v~ 263 (303)
.++++.--.+- .+++.+.+ ++-.+++.+|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 56666544433 33444443 5555554444
No 230
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=5.4e-05 Score=70.86 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=78.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~---~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
..++--+...++||++|||.++.+|..++.+.+.+-. .+.|++-|++...+....+.+....- .++.+...
T Consensus 143 vSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~------~~~~v~~~ 216 (375)
T KOG2198|consen 143 VSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS------PNLLVTNH 216 (375)
T ss_pred hhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC------cceeeecc
Confidence 4455445556899999999999999999888776522 24899999999998888877744321 24444444
Q ss_pred CCCCC-------CC--CCCCccEEEEcCCCc-----------------------------hHHHHHHhcccCCcEEEEEE
Q 022070 221 DGRKG-------WP--EFAPYDAIHVGAAAP-----------------------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 221 D~~~~-------~~--~~~~fD~Iv~~~~~~-----------------------------~v~~~~~~~LkpGG~lii~v 262 (303)
|+... +. ....||+|+++.++. .++.+..++||+||++|.+.
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 43221 11 225799999987651 12345678999999999854
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.94 E-value=3.3e-05 Score=72.06 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+.+|+++||+||++|++|..++++ | .+|++||..+-. ..+... ++|....+|.....+..+++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G--~~V~AVD~g~l~-----~~L~~~--------~~V~h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-G--MFVTAVDNGPMA-----QSLMDT--------GQVEHLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-C--CEEEEEechhcC-----HhhhCC--------CCEEEEeccCcccCCCCCCCC
Confidence 468999999999999999999998 4 699999955421 122221 589999999877665457899
Q ss_pred EEEEcCCCc--hHHHHHHhcccCC
Q 022070 234 AIHVGAAAP--EIPQALIDQLKPG 255 (303)
Q Consensus 234 ~Iv~~~~~~--~v~~~~~~~LkpG 255 (303)
.++|+.... .+.+-+.++|..|
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcC
Confidence 999998652 3444555555444
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.89 E-value=4.3e-05 Score=70.66 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|-+...+++.+. +++|..++|.-+|.|+.+..+++.+++ ++|+|+|.++.+++.|++++...+ .++.+++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~~~i~ 75 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRVVLIH 75 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcEEEEe
Confidence 455677888876 788899999999999999999998754 999999999999999999887642 4899999
Q ss_pred cCCCCCC---C--CCCCccEEEEcCC
Q 022070 220 GDGRKGW---P--EFAPYDAIHVGAA 240 (303)
Q Consensus 220 ~D~~~~~---~--~~~~fD~Iv~~~~ 240 (303)
++..+.. . ....+|.|+.+-.
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEecc
Confidence 9887532 1 1246999987753
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.88 E-value=5.1e-05 Score=61.91 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=49.4
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 224 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~ 224 (303)
.++|||||.|..+..+++.. +..+|+++|.++.+.+.++++++.++. .++++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 48999999999999999884 557999999999999999999988765 357777766544
No 234
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.87 E-value=7.3e-05 Score=69.81 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccCCCCEEEEEcCCCCCCC-CCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLKEGSLSVHVGDGRKGWP-EFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~-~~~~ 231 (303)
++...+||-+|.|.|.....+.+. +.-.+++-+|.+|++++.++++..-..+ ...+...+++++..|+.+-.. ....
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 455679999999999999888875 3347999999999999999965532222 123555789999999875322 2258
Q ss_pred ccEEEEcCCC-----------chHHHHHHhcccCCcEEEEEECCC
Q 022070 232 YDAIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 232 fD~Iv~~~~~-----------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
||.|+.+-.- .+....+.+.|+++|++++..+..
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9999988643 233456788999999999977664
No 235
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.86 E-value=3.5e-05 Score=67.09 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=58.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 143 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 143 ~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
...+++.+.. ..++..|-|+|||.+.++..+. ...+|+..|..+. +-.+..+|.
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~---------------------n~~Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP---------------------NPRVTACDI 113 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S---------------------STTEEES-T
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC---------------------CCCEEEecC
Confidence 3566777762 3445699999999999885443 2257999997532 224667888
Q ss_pred CCCCCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEEEE
Q 022070 223 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 223 ~~~~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii~v 262 (303)
...+.+.+..|++|..-.+ ...+.++.|.|||||.|.+.-
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8766666899999876543 456789999999999999844
No 236
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.85 E-value=0.00034 Score=54.98 Aligned_cols=99 Identities=32% Similarity=0.423 Sum_probs=67.5
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CCCC--CCccEEE
Q 022070 160 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEF--APYDAIH 236 (303)
Q Consensus 160 VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~--~~fD~Iv 236 (303)
++|+|||+|..+ .++........++++|+++.+++.++..... ... ..+.+..+|.... .+.. ..||.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999987 5555532213899999999999885554432 110 1167777776652 2222 3799994
Q ss_pred EcCCC-----chHHHHHHhcccCCcEEEEEECCC
Q 022070 237 VGAAA-----PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 237 ~~~~~-----~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
..... ......+.+.++|+|.+++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44332 456788999999999999876653
No 237
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.82 E-value=0.00018 Score=66.25 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCEEEEEcCCcc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCC----CC-CCC
Q 022070 157 GMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRK----GW-PEF 229 (303)
Q Consensus 157 g~~VLDIGcG~G-~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~-~~~~~~~~~~v~~~~~D~~~----~~-~~~ 229 (303)
.-++||||||.- ......++.++ .+++|+|+++..++.|++++..+ .+. ++|+++...-.. .. ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~-----~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLE-----SRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T-----TTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccc-----cceEEEEcCCccccchhhhccc
Confidence 358999999985 45666666665 89999999999999999999998 665 578887664322 11 223
Q ss_pred CCccEEEEcCCCchHH
Q 022070 230 APYDAIHVGAAAPEIP 245 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~ 245 (303)
+.||+.+|+.++..-.
T Consensus 176 e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp S-EEEEEE-----SS-
T ss_pred ceeeEEecCCccccCh
Confidence 6899999999885443
No 238
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=5.8e-05 Score=64.37 Aligned_cols=96 Identities=23% Similarity=0.279 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCC------
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGW------ 226 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D~~~~~------ 226 (303)
++|+++|||+||.+|..+..+.++.+|++.|.|||+- ++. ..+.++++.+ |..+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~--------p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIE--------PPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------ecc--------CCCCcccccccccCCHHHHHHHH
Confidence 6889999999999999999999999999999999973 111 1134455554 554321
Q ss_pred --CCCCCccEEEEcCCC--------c---------hHHHHHHhcccCCcEEEEEECCCc
Q 022070 227 --PEFAPYDAIHVGAAA--------P---------EIPQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 227 --~~~~~fD~Iv~~~~~--------~---------~v~~~~~~~LkpGG~lii~v~~~~ 266 (303)
.++.+.|+|+++..- . .++-.....++|+|.+++-++.+.
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 123578999988642 1 112234567899999999877653
No 239
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.75 E-value=0.00036 Score=66.06 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC---CCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWPE 228 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D~~~---~~~~ 228 (303)
.+++.+|+-+|||+ |.++..+|+..|. .+|+++|.+++.++.|++..... .+..... +... ....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHHhC
Confidence 34555999999999 9999999999875 79999999999999998753221 1111111 1000 1111
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+++-........+.+.+.+++||.+++
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 13699999988887888999999999999997
No 240
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=7.2e-05 Score=66.20 Aligned_cols=98 Identities=27% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE-EEcCCCCCCCC--CCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDGRKGWPE--FAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~-~~~D~~~~~~~--~~~ 231 (303)
.+|..+||||+.||++|.++.++. . .+|+|+|+.-.++.+--++ . ++|.. ...+++...+. .+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-A-k~VyavDVG~~Ql~~kLR~---d--------~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-A-KHVYAVDVGYGQLHWKLRN---D--------PRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-C-cEEEEEEccCCccCHhHhc---C--------CcEEEEecCChhhCCHHHcccC
Confidence 468899999999999999999983 3 7999999988776653221 1 24433 33444432221 146
Q ss_pred ccEEEEcCCCc---hHHHHHHhcccCCcEEEEEECCC
Q 022070 232 YDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 232 fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.|+|+++.++. .++..+..++++++.++..+-..
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQ 181 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQ 181 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecch
Confidence 79999998875 45678889999999999877654
No 241
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.74 E-value=0.00021 Score=66.92 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=71.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRKGWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~---D~~~~~~~ 228 (303)
.++||++|+-+|+|- |..+..+|+.++ .+|+++|++++..+.|++.-+. .++.. |..+...
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd------------~~i~~~~~~~~~~~~- 227 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD------------HVINSSDSDALEAVK- 227 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc------------EEEEcCCchhhHHhH-
Confidence 489999999999984 678899999887 8999999999999999764221 22221 1111111
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+.||.|+.... +..++...+.||+||++++
T Consensus 228 -~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 228 -EIADAIIDTVG-PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred -hhCcEEEECCC-hhhHHHHHHHHhcCCEEEE
Confidence 34999999999 8888999999999999997
No 242
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.00021 Score=65.88 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-----CCCC--
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-----DGRK-- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-----D~~~-- 224 (303)
.+++|.+||-+|+|+ |..+...|+.+|. .+|+.+|++++.++.|++ + |. ..+..... +..+
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~---Ga------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-F---GA------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-h---CC------eEEeeccccccHHHHHHHH
Confidence 589999999999999 9999999999876 799999999999999987 3 22 12211111 1111
Q ss_pred -CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 225 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 -~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.......+|+.|.....+..++.+...+|.||.+++
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEE
Confidence 011113599999999999889999999999999665
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=6.8e-05 Score=64.43 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
-.|++|||.|+|+|..+...++.. . ..|++.|+.+...+.++-|.+.+++ ++.+...|... ..+.||+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-A-~~v~a~d~~P~~~~ai~lNa~angv-------~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-A-AEVVAADIDPWLEQAIRLNAAANGV-------SILFTHADLIG---SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-h-HHHHhcCCChHHHHHhhcchhhccc-------eeEEeeccccC---CCcceeE
Confidence 368899999999999999888884 3 6899999999998888888888775 67777777655 3378999
Q ss_pred EEEcCCC------chHHHHHHhcccCCcEEEE
Q 022070 235 IHVGAAA------PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 235 Iv~~~~~------~~v~~~~~~~LkpGG~lii 260 (303)
|+.+..+ ..+++ +.+.|+..|..++
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 9887655 22334 6666677666666
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.00032 Score=64.17 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|-+...+++.|. ++++...+|.--|-|+.+..+.+.+++.++++|+|.++.+++.|++++...+ +++.+++
T Consensus 9 pVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-------~r~~~v~ 79 (314)
T COG0275 9 PVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-------GRVTLVH 79 (314)
T ss_pred chHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-------CcEEEEe
Confidence 345567778776 7888999999999999999999998877899999999999999999987754 4788888
Q ss_pred cCCCCCC---C--CCCCccEEEEc
Q 022070 220 GDGRKGW---P--EFAPYDAIHVG 238 (303)
Q Consensus 220 ~D~~~~~---~--~~~~fD~Iv~~ 238 (303)
+...+.. . ..+.+|-|+.+
T Consensus 80 ~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 80 GNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEe
Confidence 8765421 1 12567777654
No 245
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=8.5e-05 Score=65.35 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
+.-..++|||||-|+...++.... -.+++-+|.|..|++.+++. ...++ .+....+|.........++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~-qdp~i-------~~~~~v~DEE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA-QDPSI-------ETSYFVGDEEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc-CCCce-------EEEEEecchhcccccccchhh
Confidence 344589999999999998887652 26899999999999988653 22211 345566775544344478999
Q ss_pred EEEcCCCchH------HHHHHhcccCCcEEEEEE
Q 022070 235 IHVGAAAPEI------PQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 235 Iv~~~~~~~v------~~~~~~~LkpGG~lii~v 262 (303)
|++....+++ +..+...|||+|.++.++
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence 9998876544 467888999999999754
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.65 E-value=0.00011 Score=71.30 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=58.6
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGV---EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gv---Dis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
.+||||||.|.++++|.++- ..+.++ |..+.++++|-++ |+. .+--..+.-+-.. +...||+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR----Gvp------a~~~~~~s~rLPf-p~~~fDmv 185 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER----GVP------AMIGVLGSQRLPF-PSNAFDMV 185 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc----Ccc------hhhhhhccccccC-Cccchhhh
Confidence 68999999999999999873 333332 4455677776554 221 1111222222222 33889999
Q ss_pred EEcCCC-c------hHHHHHHhcccCCcEEEEEECCC
Q 022070 236 HVGAAA-P------EIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 236 v~~~~~-~------~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.|.... . -++-++-|.|+|||.++.+-+..
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 887543 1 12356789999999999865543
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00057 Score=59.66 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFAP 231 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~~ 231 (303)
.+|.+||+||-|-|.....+.+. .+ .+-+.||.+++.+++.++. +. -..+||.+..+-..+. +++ +.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~----gw---~ek~nViil~g~WeDvl~~L~d-~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDW----GW---REKENVIILEGRWEDVLNTLPD-KH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhc----cc---ccccceEEEecchHhhhccccc-cC
Confidence 56889999999999999888877 45 5667889999998877654 22 1226888887765543 333 67
Q ss_pred ccEEEEcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 232 YDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 232 fD~Iv~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
||-|+-+.-. .+..+.+.++|||+|++-.-
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 9999988653 34567899999999998873
No 248
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.59 E-value=0.00018 Score=68.18 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=83.7
Q ss_pred HHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022070 149 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 228 (303)
Q Consensus 149 ~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 228 (303)
.+....+++..++|+|||-|..+.+++..-+ ..++|+|.++..+..+........+. +.-.++.+|..+...+
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~~~~fe 175 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFGKMPFE 175 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhhcCCCC
Confidence 3333578888999999999999999998754 78999999999998888777665553 3445578888887777
Q ss_pred CCCccEEEEcCCC------chHHHHHHhcccCCcEEEEE
Q 022070 229 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~~~------~~v~~~~~~~LkpGG~lii~ 261 (303)
+..||.+.+.... ..+.+++.+.++|||+++.-
T Consensus 176 dn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 176 DNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 7899999766544 34578999999999999973
No 249
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.58 E-value=0.0034 Score=55.96 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=66.3
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022070 142 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 221 (303)
Q Consensus 142 ~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D 221 (303)
...+++-+....--.|++||-+|=.-- .+..+|.. +...+|+.+|+++..++..++..++.++ +|+.+..|
T Consensus 30 ~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~D 100 (243)
T PF01861_consen 30 TLRRAALMAERGDLEGKRILFLGDDDL-TSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYD 100 (243)
T ss_dssp HHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---
T ss_pred HHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 344444444432246889999995553 33444443 3448999999999999999999998876 59999999
Q ss_pred CCCCCCCC--CCccEEEEcCCCc-----hHHHHHHhcccCCc-EEEEEECCC
Q 022070 222 GRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGNI 265 (303)
Q Consensus 222 ~~~~~~~~--~~fD~Iv~~~~~~-----~v~~~~~~~LkpGG-~lii~v~~~ 265 (303)
.++.+|+. +.||+++.+.+.. -...+....||..| ..++.+...
T Consensus 101 lR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 101 LRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 99988764 8999999998752 23466777787766 666666554
No 250
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.56 E-value=0.0003 Score=62.95 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..++..++.. .....|-|+|||-+.++. +....|++.|+.+ .+-+++.+|++
T Consensus 169 d~ii~~ik~r-~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a---------------------~~~~V~~cDm~ 220 (325)
T KOG3045|consen 169 DVIIRKIKRR-PKNIVIADFGCGEAKIAS------SERHKVHSFDLVA---------------------VNERVIACDMR 220 (325)
T ss_pred HHHHHHHHhC-cCceEEEecccchhhhhh------ccccceeeeeeec---------------------CCCceeecccc
Confidence 4566666622 233478999999988765 1225799998642 25577888999
Q ss_pred CCCCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii~v 262 (303)
+...++++.|++|....+ ...++++.+.||+||.+.+.-
T Consensus 221 ~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 221 NVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 877677999998766432 455789999999999999854
No 251
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.47 E-value=0.0018 Score=64.07 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred CCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022070 134 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 210 (303)
Q Consensus 134 g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~---~~~V~gvDis~~~l~~A~~~~~~~~~~~~~ 210 (303)
|+..+..++...+++.+. +++..+|.|..||+|++-...++.++. +...+|.|+++.....|+.++--.+..
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 677777777788888776 477889999999999988887777653 267899999999999999998877653
Q ss_pred CCCCEEEEEcCCCCCC-C----CCCCccEEEEcCCCc-------------------------------hHHHHHHhcccC
Q 022070 211 KEGSLSVHVGDGRKGW-P----EFAPYDAIHVGAAAP-------------------------------EIPQALIDQLKP 254 (303)
Q Consensus 211 ~~~~v~~~~~D~~~~~-~----~~~~fD~Iv~~~~~~-------------------------------~v~~~~~~~Lkp 254 (303)
.++.+..+|-.... . ..+.||.|+++.++- ...+.+...|+|
T Consensus 241 --~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 --GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred --ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 14556666654322 1 226799999887651 012467788999
Q ss_pred CcEEEEEECCC
Q 022070 255 GGRMVIPVGNI 265 (303)
Q Consensus 255 GG~lii~v~~~ 265 (303)
||+..+-++.+
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88777666553
No 252
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00034 Score=60.15 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHH-HHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL----VVSSIQN-IEKSAAAPLLKEGSLSVHVGDGRKGWPE 228 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~----l~~A~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 228 (303)
+++|++|+|+-.|.|++|..++..+|+++.|++.-..+.. .+..+.+ +..... ..|++.+-.+.....+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----YANVEVIGKPLVALGAP 120 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----hhhhhhhCCcccccCCC
Confidence 7999999999999999999999999999999987443221 1111111 110000 12444444443322222
Q ss_pred CCCccEEEEcC-------------CCchHHHHHHhcccCCcEEEEE
Q 022070 229 FAPYDAIHVGA-------------AAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~-------------~~~~v~~~~~~~LkpGG~lii~ 261 (303)
...|++.... ....+...+++.|||||.+++.
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred -CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 3445443322 1234567889999999999973
No 253
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.38 E-value=0.0008 Score=63.09 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCCCCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~ 231 (303)
..++++||-+|||. |..+..+|+..|. .+|+++|.+++.++.+++ .|.. .+ .....+..+.....+.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~----lGa~------~vi~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE----MGAD------KLVNPQNDDLDHYKAEKGY 235 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH----cCCc------EEecCCcccHHHHhccCCC
Confidence 45789999999987 8888999998762 379999999999888865 2221 11 1111111111111245
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|+|+.........+.+.+.|++||++++
T Consensus 236 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 236 FDVSFEVSGHPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 99999887776677888999999999986
No 254
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.36 E-value=7.9e-05 Score=65.10 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC----CCC
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE----FAP 231 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~~~ 231 (303)
....|+|.-||-|+.+...|..+ ..|++||+++..+..|++|++-.|+. ++|+|++||..+.... ...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHHHHHHHHhhhhhe
Confidence 34589999999999999999886 68999999999999999999999886 6999999998764321 134
Q ss_pred ccEEEEcCC
Q 022070 232 YDAIHVGAA 240 (303)
Q Consensus 232 fD~Iv~~~~ 240 (303)
+|+|+..++
T Consensus 166 ~~~vf~spp 174 (263)
T KOG2730|consen 166 YDCVFLSPP 174 (263)
T ss_pred eeeeecCCC
Confidence 667766543
No 255
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.31 E-value=0.00063 Score=60.54 Aligned_cols=87 Identities=24% Similarity=0.375 Sum_probs=51.5
Q ss_pred CCCCC--EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc---CCCCEEEEEcCCCCCCC-
Q 022070 154 LKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWP- 227 (303)
Q Consensus 154 l~~g~--~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~~- 227 (303)
++++. +|||.-+|-|.-+..+|.. | ++|+++|.|+-.....+.-+......... ...+++++.+|..+.+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 56654 8999999999999999975 6 78999999998776665444332111001 01489999999988665
Q ss_pred CCCCccEEEEcCCCch
Q 022070 228 EFAPYDAIHVGAAAPE 243 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~ 243 (303)
...+||+|+.+.|+++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 2378999999999854
No 256
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.27 E-value=0.00095 Score=60.38 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-------------CC----------c
Q 022070 154 LKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-------------AP----------L 209 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~-~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~-------------~~----------~ 209 (303)
-..|.++||||||+-..-. .+++.. .+++..|..+.-.+..++.+++.+. .. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 3467899999999955433 333333 5899999999888877766644321 00 0
Q ss_pred cCCCCE-EEEEcCCCCCCCCC------CCccEEEEcCCCch----------HHHHHHhcccCCcEEEEEE
Q 022070 210 LKEGSL-SVHVGDGRKGWPEF------APYDAIHVGAAAPE----------IPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 210 ~~~~~v-~~~~~D~~~~~~~~------~~fD~Iv~~~~~~~----------v~~~~~~~LkpGG~lii~v 262 (303)
++ ..| .++..|..+..+.. .+||+|++...++. ..+++.++|||||.|++..
T Consensus 131 lR-~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 131 LR-RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HH-HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HH-HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 00 123 46778887644322 24999998876543 3477889999999999843
No 257
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.24 E-value=0.0014 Score=60.10 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
..+|||+|||+|..+..+.+.++.-.+++++|.|+.+++.++.-+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 35999999999988777777776456899999999999999886654
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.21 E-value=0.0031 Score=62.52 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC--C---------
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--G--------- 222 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D--~--------- 222 (303)
.++.+|+-+|||. |..+...|+.+| ++|+++|.+++..+.+++. |. ..+.+...+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GA------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------eEEEeccccccccccchhhhc
Confidence 5789999999999 889999999988 5899999999999988762 21 111111000 0
Q ss_pred CCC--------CCC-CCCccEEEEcCCC-----chH-HHHHHhcccCCcEEEE
Q 022070 223 RKG--------WPE-FAPYDAIHVGAAA-----PEI-PQALIDQLKPGGRMVI 260 (303)
Q Consensus 223 ~~~--------~~~-~~~fD~Iv~~~~~-----~~v-~~~~~~~LkpGG~lii 260 (303)
.+. +.+ ...+|+|+..... +.+ .++..+.+||||+++.
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 000 000 1358999988765 335 4899999999999875
No 259
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.16 E-value=0.0023 Score=60.29 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH---IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDi---s~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 229 (303)
+++|.+||-+|+|. |.++..+|+..| .+|++++. ++...+.+++ .+. +.+.....+..+ ....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga------~~v~~~~~~~~~-~~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGA------TYVNSSKTPVAE-VKLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCC------EEecCCccchhh-hhhc
Confidence 46789999999988 889999999886 58999987 6777776653 222 111111111100 0112
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+.+|+|+.............+.|++||++++
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEE
Confidence 5699999888776677888999999999875
No 260
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.16 E-value=0.0049 Score=56.18 Aligned_cols=118 Identities=24% Similarity=0.236 Sum_probs=78.7
Q ss_pred HHHHHHHHHccC------CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---hc--------
Q 022070 143 HATCLQLLEENL------KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK---SA-------- 205 (303)
Q Consensus 143 ~~~~l~~l~~~l------~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~---~~-------- 205 (303)
...+++.|.... +...+||.-|||-|.++-.+|.+ | -.+.|.|.|--|+-...-.+.. ..
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~-G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL-G--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc-c--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 345555554332 23468999999999999999998 4 6899999999886544332221 00
Q ss_pred ------------cC----Cc-------cCCCCEEEEEcCCCCCCCCC---CCccEEEEcCCC---c---hHHHHHHhccc
Q 022070 206 ------------AA----PL-------LKEGSLSVHVGDGRKGWPEF---APYDAIHVGAAA---P---EIPQALIDQLK 253 (303)
Q Consensus 206 ------------~~----~~-------~~~~~v~~~~~D~~~~~~~~---~~fD~Iv~~~~~---~---~v~~~~~~~Lk 253 (303)
++ ++ -...++.+..||..+..... +.||+|+...-+ + +.++.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 00 10 11246888888888765554 799999766422 2 34578999999
Q ss_pred CCcEEEEEECC
Q 022070 254 PGGRMVIPVGN 264 (303)
Q Consensus 254 pGG~lii~v~~ 264 (303)
||| +.+-+|.
T Consensus 194 pgG-~WIN~GP 203 (270)
T PF07942_consen 194 PGG-YWINFGP 203 (270)
T ss_pred cCC-EEEecCC
Confidence 999 5555554
No 261
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.07 E-value=0.0074 Score=56.36 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+++|++||-.|+|. |..+..+|+..| .+|++++.+++..+.+++ .|. +.+ + +..+. ..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~----~Ga------~~v--i--~~~~~--~~~~ 223 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA----LGA------ASA--G--GAYDT--PPEP 223 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----hCC------cee--c--ccccc--Cccc
Confidence 478899999999876 777888888876 689999999988877765 332 111 1 11111 1145
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|+++.........+...+.|++||++++
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAV 252 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEE
Confidence 88777655455677888899999999976
No 262
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.07 E-value=0.00067 Score=61.57 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
..+..++|+|||.|-... ..|...+.|.|++...+..|++. +......+|+.........||.
T Consensus 44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFDA 106 (293)
T ss_pred CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCcccc
Confidence 458899999999986431 12346789999998888877642 2225777888887666689999
Q ss_pred EEEcCCCchH---------HHHHHhcccCCcEEEEEECCCceeE
Q 022070 235 IHVGAAAPEI---------PQALIDQLKPGGRMVIPVGNIFQDL 269 (303)
Q Consensus 235 Iv~~~~~~~v---------~~~~~~~LkpGG~lii~v~~~~~~~ 269 (303)
+++.++.+|+ .++..+.|+|||...+-++...|..
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~ 150 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQ 150 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccC
Confidence 9999988765 4678899999999999887765543
No 263
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.04 E-value=0.0018 Score=60.31 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=78.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHhccCCccCCCCEEEEEcCCCC-
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-------SSIQNIEKSAAAPLLKEGSLSVHVGDGRK- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~-------~A~~~~~~~~~~~~~~~~~v~~~~~D~~~- 224 (303)
.++||+.|+|--.|||.+....|+- | +.|+|.||+-.++. -.+.|++..+..+ .-+.+..+|...
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~----~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS----QFLDVLTADFSNP 277 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCCcc----hhhheeeecccCc
Confidence 4799999999999999998888876 5 89999999988776 3466778776431 346788888765
Q ss_pred CCCCCCCccEEEEcCCC---------------------------------------chHHHHHHhcccCCcEEEEEECC
Q 022070 225 GWPEFAPYDAIHVGAAA---------------------------------------PEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~---------------------------------------~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
.+-....||.|+|+.+. ..++.-+.+.|..||++++-.+.
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 33345789999999763 01123456789999999986653
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.01 E-value=0.0035 Score=56.17 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=72.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
..+...+...+.+..+|+|||||-=-++...... .++..++|+||+..+++.....+...+. +.++...|..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------~~~~~v~Dl~ 164 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGV-------PHDARVRDLL 164 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCC-------CcceeEeeee
Confidence 3445555445566789999999998888766654 4557999999999999999998888764 6778888887
Q ss_pred CCCCCCCCccEEEEcCCCchHHH-------HHHhcccCCcEEEEEECCC
Q 022070 224 KGWPEFAPYDAIHVGAAAPEIPQ-------ALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~~~v~~-------~~~~~LkpGG~lii~v~~~ 265 (303)
...+. +..|+.+.--..+-+.+ ++.+.++-. .++++.+..
T Consensus 165 ~~~~~-~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~-~~vVSfPtr 211 (251)
T PF07091_consen 165 SDPPK-EPADLALLLKTLPCLERQRRGAGLELLDALRSP-HVVVSFPTR 211 (251)
T ss_dssp TSHTT-SEESEEEEET-HHHHHHHSTTHHHHHHHHSCES-EEEEEEES-
T ss_pred ccCCC-CCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC-eEEEecccc
Confidence 65443 77899988766543321 234444333 566666653
No 265
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.01 E-value=0.0056 Score=53.49 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022070 139 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 215 (303)
Q Consensus 139 ~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~---~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v 215 (303)
.|+....+.+.+- .++| +.|+|+|.-.|+.+.+.|.. ++..++|+|||++-...... ..+...+. ++|
T Consensus 17 ~P~Dm~~~qeli~-~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~-----~rI 87 (206)
T PF04989_consen 17 YPQDMVAYQELIW-ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS-----PRI 87 (206)
T ss_dssp -HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTE
T ss_pred CHHHHHHHHHHHH-HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc-----Cce
Confidence 3555555545443 3566 59999999999988877754 45668999999964433221 11111111 589
Q ss_pred EEEEcCCCCCC--------CCCCCccEEEEcCC--CchHH---HHHHhcccCCcEEEE
Q 022070 216 SVHVGDGRKGW--------PEFAPYDAIHVGAA--APEIP---QALIDQLKPGGRMVI 260 (303)
Q Consensus 216 ~~~~~D~~~~~--------~~~~~fD~Iv~~~~--~~~v~---~~~~~~LkpGG~lii 260 (303)
+++.||..+.. ...+...+|+.++. .+++. +....++++|+++|+
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 99999986421 11134457777765 24454 456688999999996
No 266
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.96 E-value=0.0053 Score=57.59 Aligned_cols=89 Identities=19% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHH-hCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~-~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
+++|++||-+|||. |.++..+++. .+. .+|+++|.+++.++.+++ + + .. ....+. .....
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~-~---~--------~~-~~~~~~----~~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF-A---D--------ET-YLIDDI----PEDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh-c---C--------ce-eehhhh----hhccC
Confidence 57899999999988 7777777765 332 589999999998888764 1 1 11 111111 11124
Q ss_pred ccEEEEcCC---CchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAA---APEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~---~~~v~~~~~~~LkpGG~lii 260 (303)
+|+|+-... .+..++...+.|++||++++
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 899997665 44567888999999999885
No 267
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.91 E-value=0.0047 Score=59.70 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
..+|++|+-+|+|+ |...+.+++..| ++|+.+|+++...+.|++ .|. +.. +..+. ...+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G~---------~~~--~~~e~---v~~a 258 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EGY---------EVM--TMEEA---VKEG 258 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cCC---------EEc--cHHHH---HcCC
Confidence 35799999999999 888888888877 689999999988877754 221 111 11111 1357
Q ss_pred cEEEEcCCCchHHHH-HHhcccCCcEEEE
Q 022070 233 DAIHVGAAAPEIPQA-LIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~-~~~~LkpGG~lii 260 (303)
|+|+......+++.. ..+.+|+||+++.
T Consensus 259 DVVI~atG~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 259 DIFVTTTGNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 999988777776655 4899999998875
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0019 Score=58.90 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCcc
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~fD 233 (303)
..++||-||-|-|......+++ ..-..+.-+|+++..++..++.+...... +..++|.+..||...... ...+||
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCce
Confidence 3469999999999988887777 34468899999999999999998776543 556789999999875432 237999
Q ss_pred EEEEcCCC----------chHHHHHHhcccCCcEEEEEE
Q 022070 234 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 234 ~Iv~~~~~----------~~v~~~~~~~LkpGG~lii~v 262 (303)
+|+.+..- +...+.+.+.||+||+++..-
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99987642 233467889999999999743
No 269
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.89 E-value=0.00025 Score=61.55 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
...++||+|+|.|-.+..++..+ .+|++.|.|..|..+.++. + -||--. .+..+ .+-+||+|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~-------ynVl~~-~ew~~---t~~k~dli 173 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----N-------YNVLTE-IEWLQ---TDVKLDLI 173 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----C-------Cceeee-hhhhh---cCceeehH
Confidence 44699999999999999999987 6899999999998776542 1 122111 11111 22468998
Q ss_pred EEcCCC------chHHHHHHhcccC-CcEEEEEE
Q 022070 236 HVGAAA------PEIPQALIDQLKP-GGRMVIPV 262 (303)
Q Consensus 236 v~~~~~------~~v~~~~~~~Lkp-GG~lii~v 262 (303)
.|-..+ -.+++.+...|+| .|++|+..
T Consensus 174 ~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 174 LCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 765543 2456788888999 89988754
No 270
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.88 E-value=0.003 Score=51.84 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=53.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccEEEEcCCC---------------chH
Q 022070 183 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDAIHVGAAA---------------PEI 244 (303)
Q Consensus 183 ~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~~~fD~Iv~~~~~---------------~~v 244 (303)
+|+|.||.+++++.+++++.+.++. +++++++..=.. ..+. +++|.++.+-.. -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 6999999999999999999998765 579998876433 2222 589999887543 112
Q ss_pred HHHHHhcccCCcEEEEEEC
Q 022070 245 PQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 245 ~~~~~~~LkpGG~lii~v~ 263 (303)
.+.+.+.|+|||++++.+-
T Consensus 75 l~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHhhccCCEEEEEEe
Confidence 4678899999999998663
No 271
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.87 E-value=0.0041 Score=58.13 Aligned_cols=89 Identities=20% Similarity=0.276 Sum_probs=71.0
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
...+|+|.|.|..+..+...+ .++-+++.+...+..+.+++. . .|+.+.+|..+..|. -|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCCC---cCeEEE
Confidence 688999999999999999876 469999999988887777653 2 477888998876443 478987
Q ss_pred cCCC--------chHHHHHHhcccCCcEEEEEE
Q 022070 238 GAAA--------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 238 ~~~~--------~~v~~~~~~~LkpGG~lii~v 262 (303)
-..+ .++++++++.|+|||.+++.-
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 6554 456789999999999999843
No 272
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.86 E-value=0.016 Score=53.43 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=66.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC--CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK--GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D~~~--~~~~ 228 (303)
.++++.+||..|+|. |..+..+|+..| .+|++++.+++..+.+++ .+.. .+..... +..+ ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGAD------EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCC------EEEcCCCcCHHHHHHHhc
Confidence 367888999999875 888899999876 679999999988877754 2221 1110000 0000 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
...+|+|+.........+.+.+.|+++|+++..
T Consensus 230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 256999988766667788889999999999863
No 273
>PHA01634 hypothetical protein
Probab=96.83 E-value=0.0073 Score=48.59 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD~ 234 (303)
.+++|+|||++.|..+.+++.+. . .+|+++|.++...+..+++++.+.+- +.. -....|+ .-++||+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-A-K~Vva~E~~~kl~k~~een~k~nnI~-----DK~-----v~~~eW~~~Y~~~Di 95 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-A-SFVVQYEKEEKLRKKWEEVCAYFNIC-----DKA-----VMKGEWNGEYEDVDI 95 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-c-cEEEEeccCHHHHHHHHHHhhhheee-----ece-----eecccccccCCCcce
Confidence 46799999999999999999884 3 69999999999999999988764221 111 1111233 2378998
Q ss_pred EEEcC-CCch
Q 022070 235 IHVGA-AAPE 243 (303)
Q Consensus 235 Iv~~~-~~~~ 243 (303)
.+.+. .+++
T Consensus 96 ~~iDCeGCE~ 105 (156)
T PHA01634 96 FVMDCEGCEE 105 (156)
T ss_pred EEEEccchHH
Confidence 87765 3443
No 274
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.82 E-value=0.0048 Score=59.05 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD~ 234 (303)
.+-+|||.=+|+|.=+.-.+...+...+|+.-|+|+++++..++|++.+++.. +.+++...|+...+. ....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHHHhhhccccCCE
Confidence 44589999999999888888875444699999999999999999999988751 258888989865432 3378999
Q ss_pred EEEcCC--CchHHHHHHhcccCCcEEEEEE
Q 022070 235 IHVGAA--APEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 235 Iv~~~~--~~~v~~~~~~~LkpGG~lii~v 262 (303)
|=.+.- ....++.+.+.+|.||.|.+..
T Consensus 125 IDlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 988853 3356789999999999999854
No 275
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.78 E-value=0.0062 Score=52.86 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=71.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc-cCCCCEEEEEcCCCCCCCC---CCCcc
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVGDGRKGWPE---FAPYD 233 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~---~~~fD 233 (303)
-.+.|||||-|++...++..+ |+.-+.|.||--...+..++++......+. -...|+.+...+....++. .+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 468999999999999999997 678999999988888888888876553211 1135777777776654432 13333
Q ss_pred EEEEcCCC--------------chHHHHHHhcccCCcEEEEEEC
Q 022070 234 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 234 ~Iv~~~~~--------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
..+....- .++..+..-.|++||.++....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 33332222 2334555667899999997543
No 276
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.76 E-value=0.016 Score=55.02 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKG---WP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~~---~~ 227 (303)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+.. .+ .....|..+. ..
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~------~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE----LGAT------ATVNAGDPNAVEQVRELT 256 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH----cCCc------eEeCCCchhHHHHHHHHh
Confidence 478899999999987 8888889998762 269999999999888864 2221 11 1111111000 11
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. +.+|+|+.........+...+.|+++|+++.
T Consensus 257 ~-~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 257 G-GGVDYAFEMAGSVPALETAYEITRRGGTTVT 288 (371)
T ss_pred C-CCCCEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 1 3689999877666777888899999999886
No 277
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.74 E-value=0.0077 Score=54.79 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~ 229 (303)
..++++||-+|+|+ |..+..+|+..|. .+|+++|.+++..+.+++. +.. .+ +...+..+ .....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga~------~~-i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSF----GAT------AL-AEPEVLAERQGGLQNG 185 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CCc------Ee-cCchhhHHHHHHHhCC
Confidence 45889999999987 8888889998762 2488999999888877652 221 10 00001000 01112
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+|+|+.........+.+.+.|+++|++++
T Consensus 186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 186 RGVDVALEFSGATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCEEEE
Confidence 3589999877777778888999999999986
No 278
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.68 E-value=0.006 Score=58.49 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=48.7
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
.|||||+|+|.++..+++..+ ..|+++|.-..|.+.|++-..+++.. ++|.++..-.
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~S-----dkI~vInkrS 125 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMS-----DKINVINKRS 125 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCc-----cceeeecccc
Confidence 689999999999999998854 57999999999999999999999886 5776665443
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.66 E-value=0.0026 Score=59.00 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
|-+...+++.|. ++++..++|.-.|.|+.+..+.+.+++ ++++|+|.++++++.|++++.... +++.++.
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-------~r~~~~~ 75 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-------DRFIFIH 75 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-------TTEEEEE
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-------ceEEEEe
Confidence 445677888887 788889999999999999999998765 999999999999999988776432 5899999
Q ss_pred cCCCCCC-----C-CCCCccEEEEcCC
Q 022070 220 GDGRKGW-----P-EFAPYDAIHVGAA 240 (303)
Q Consensus 220 ~D~~~~~-----~-~~~~fD~Iv~~~~ 240 (303)
+++.+.. . ....+|-|+.+.+
T Consensus 76 ~~F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 76 GNFSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp S-GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred ccHHHHHHHHHHccCCCccCEEEEccc
Confidence 9876521 1 2257999987754
No 280
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.63 E-value=0.017 Score=54.40 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~ 227 (303)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+. +.+ .....+..+ ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~----~Ga------~~~i~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE----FGA------THTVNSSGTDPVEAIRALT 241 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCC------ceEEcCCCcCHHHHHHHHh
Confidence 468899999999987 8888889998762 259999999998888854 221 111 111111100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+|+.........+...+.+++||++++
T Consensus 242 ~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 242 GGFGADVVIDAVGRPETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 113589999877666677788899999999886
No 281
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.59 E-value=0.022 Score=53.00 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=65.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcC---CCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGD---GRKGW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D---~~~~~ 226 (303)
.+++|++||-+|+|. |..+..+|+..| .+ |++++.+++..+.+++ .+.. .+ .....+ ..+ .
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~------~~i~~~~~~~~~~~~-~ 226 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGAD------FVINSGQDDVQEIRE-L 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCC------EEEcCCcchHHHHHH-H
Confidence 367899999999987 888888898876 45 9999999988887754 2221 11 110001 000 1
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+|+.............+.|+++|++++
T Consensus 227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 1123699999877766666778899999999986
No 282
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.58 E-value=0.041 Score=50.00 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=66.5
Q ss_pred HHHHHHHHccCCCC-CEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 144 ATCLQLLEENLKPG-MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 144 ~~~l~~l~~~l~~g-~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
.+.+..+. -..| ...||||||- -..+-.+|+...|+++|+-+|.++-.+..++..+..... ....++.+
T Consensus 57 ~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------g~t~~v~a 128 (267)
T PF04672_consen 57 RRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------GRTAYVQA 128 (267)
T ss_dssp HHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------SEEEEEE-
T ss_pred HHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------ccEEEEeC
Confidence 45555554 1213 4799999995 345666777778889999999999999999988766421 12889999
Q ss_pred CCCCCCC--C----CCCcc-----EEEEcCCCc---------hHHHHHHhcccCCcEEEEEECCC
Q 022070 221 DGRKGWP--E----FAPYD-----AIHVGAAAP---------EIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 221 D~~~~~~--~----~~~fD-----~Iv~~~~~~---------~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
|.++... . .+.+| .++..+.++ .+...+.+.|.||..|+++....
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 9986210 0 02222 344444443 34567889999999999987653
No 283
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.58 E-value=0.016 Score=53.57 Aligned_cols=86 Identities=26% Similarity=0.310 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.++++||-+|||. |.++..+|+..|. ..|+++|.+++.++.|.+. . -+ |..+. ....+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~--------~i-----~~~~~--~~~g~D 202 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E--------VL-----DPEKD--PRRDYR 202 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c--------cc-----Chhhc--cCCCCC
Confidence 4578899999998 9999999998763 2467788888777666431 1 01 11110 124689
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|+-........+.+.+.|+++|++++
T Consensus 203 vvid~~G~~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 203 AIYDASGDPSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EEEECCCCHHHHHHHHHhhhcCcEEEE
Confidence 999888877778889999999999996
No 284
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.52 E-value=0.032 Score=53.29 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=66.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CCC---CCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D-~~~---~~~ 227 (303)
.++++.+||.+|||. |..+..+|+..|. .++++++.+++..+.+++... . ..+.....+ ..+ ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~---~------~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLG---A------ETINFEEVDDVVEALRELT 250 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCC---c------EEEcCCcchHHHHHHHHHc
Confidence 477899999999998 9999999999863 369999999999888876421 1 111111111 100 111
Q ss_pred CCCCccEEEEcCCC---------------------chHHHHHHhcccCCcEEEEE
Q 022070 228 EFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~---------------------~~v~~~~~~~LkpGG~lii~ 261 (303)
....+|+|+..... ....+.+.+.|+++|+++..
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 22368999876432 23567788999999999874
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.42 E-value=0.0053 Score=53.73 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=62.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhcc-----------------------------
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAA----------------------------- 206 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~-~~V~gvDis~~~l~~A~~~~~~~~~----------------------------- 206 (303)
.-++.|-+||+||+...+....+.. ..|++.|+++++++.|++|+.....
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3489999999999998888776443 5899999999999999999841100
Q ss_pred ---C---Ccc-CCCCEEEEEcCCCCCC-----CCCCCccEEEEcCCC---------------chHHHHHHhcccCCcEEE
Q 022070 207 ---A---PLL-KEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 207 ---~---~~~-~~~~v~~~~~D~~~~~-----~~~~~fD~Iv~~~~~---------------~~v~~~~~~~LkpGG~li 259 (303)
. ... +..+..+...|.++.- ......|+|+.+.+. ..+++.+...|..+++++
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 0 001 1235778888887621 111336999987643 345688889996666666
Q ss_pred E
Q 022070 260 I 260 (303)
Q Consensus 260 i 260 (303)
+
T Consensus 212 v 212 (246)
T PF11599_consen 212 V 212 (246)
T ss_dssp E
T ss_pred E
Confidence 5
No 286
>PLN02740 Alcohol dehydrogenase-like
Probab=96.31 E-value=0.047 Score=52.01 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~--D~~~---~ 225 (303)
.+++|++||-+|+|. |..+..+|+..| . +|+++|.+++..+.+++ .+.. .-+..... +..+ .
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G--~~~Vi~~~~~~~r~~~a~~----~Ga~-----~~i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG--ASKIIGVDINPEKFEKGKE----MGIT-----DFINPKDSDKPVHERIRE 263 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHH----cCCc-----EEEecccccchHHHHHHH
Confidence 478899999999988 888899999876 5 69999999998888864 2221 01111100 0100 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
... +.+|+|+.........+...+.+++| |++++
T Consensus 264 ~~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 264 MTG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEE
Confidence 111 26999998887777788888899997 88765
No 287
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.28 E-value=0.024 Score=53.64 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
+++|++||-.|+|. |..+..+|+..| .+|++++.+++....+.+ +.+.. .+ +...+........+.+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~---~~Ga~------~v-i~~~~~~~~~~~~~~~ 248 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAIN---RLGAD------SF-LVSTDPEKMKAAIGTM 248 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHH---hCCCc------EE-EcCCCHHHHHhhcCCC
Confidence 56899999999988 889999999987 678888877654332211 22221 11 0000100000011358
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
|+|+.........+...+.|++||+++.
T Consensus 249 D~vid~~g~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 249 DYIIDTVSAVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCcEEEE
Confidence 9999776655667778999999999886
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.25 E-value=0.014 Score=46.41 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CCCCCCCccEEEEcC
Q 022070 166 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWPEFAPYDAIHVGA 239 (303)
Q Consensus 166 G~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------~~~~~~~fD~Iv~~~ 239 (303)
|-|..+..+|+..| .+|+++|.++...+.+++. +. . .+...+-.+ .......+|+|+...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga------~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GA------D--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TE------S--EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----cc------c--ccccccccccccccccccccccceEEEEec
Confidence 45888999999987 8999999999998888652 21 1 111111110 011224799999998
Q ss_pred CCchHHHHHHhcccCCcEEEE
Q 022070 240 AAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 240 ~~~~v~~~~~~~LkpGG~lii 260 (303)
......+...++|+++|++++
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEE
T ss_pred CcHHHHHHHHHHhccCCEEEE
Confidence 888899999999999999997
No 289
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.23 E-value=0.067 Score=47.25 Aligned_cols=97 Identities=26% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFA 230 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~--~~~~~ 230 (303)
+.++.+||..|+|+ |..+..+++..| .+|++++.+++..+.+++. +.. .-+.....+.... ....+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GAD-----HVIDYKEEDLEEELRLTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCc-----eeccCCcCCHHHHHHHhcCC
Confidence 47889999999997 778888888876 7899999998877776432 111 0011000000000 11225
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.+|+|+.........+.+.+.|+++|+++..
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 7999998766546677888999999999863
No 290
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.20 E-value=0.0034 Score=57.45 Aligned_cols=103 Identities=23% Similarity=0.300 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~-~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
-.+..|+|+-+|-||++. ++... |. ..|+++|.+|..++..++++..+++. +...+..+|-+..-+. ...|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~R~~~~~-~~Ad 264 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDNRNPKPR-LRAD 264 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccccccCcc-ccch
Confidence 346799999999999998 66665 43 79999999999999999999887654 4556777887664433 7789
Q ss_pred EEEEcC--CCchHHHHHHhcccCCcE-EEEEECCC
Q 022070 234 AIHVGA--AAPEIPQALIDQLKPGGR-MVIPVGNI 265 (303)
Q Consensus 234 ~Iv~~~--~~~~v~~~~~~~LkpGG~-lii~v~~~ 265 (303)
+|..+. ..+.--..+.+.|||.|- ++-...+.
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred heeeccccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 998764 233334566778888655 55544443
No 291
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.17 E-value=0.08 Score=50.18 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE--cCCCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~--~D~~~---~ 225 (303)
.+++|++||-.|+|. |..+..+|+..| . +|+++|.+++..+.+++. +.. .-+.... .+..+ .
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~~----Ga~-----~~i~~~~~~~~~~~~v~~ 250 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKKL----GAT-----DCVNPNDYDKPIQEVIVE 250 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHh----CCC-----eEEcccccchhHHHHHHH
Confidence 478899999999987 888889999876 5 799999999988888542 221 0011110 00000 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
... +.+|+|+.............+.++++ |++++
T Consensus 251 ~~~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 251 ITD-GGVDYSFECIGNVNVMRAALECCHKGWGESII 285 (368)
T ss_pred HhC-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEE
Confidence 111 36899998777666778888999886 98875
No 292
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.12 E-value=0.058 Score=50.61 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=64.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~---D~~~---~ 225 (303)
.+++|++||-.|+|. |..+..+|+..| .+|+++|.+++.++.+++. +.. .-+..... +..+ .
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~----Ga~-----~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGF----GAD-----LTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCc-----eEecCccccHHHHHHHHHh
Confidence 478899999999988 889899999886 5899999999988887542 221 00111010 1100 0
Q ss_pred CCCCCCcc----EEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYD----AIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD----~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
......+| .|+.........+.+.++|++||++++
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEE
Confidence 00112344 677665556667778899999999986
No 293
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.07 E-value=0.029 Score=55.65 Aligned_cols=96 Identities=25% Similarity=0.392 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC------
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG------ 225 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~---~D~~~~------ 225 (303)
++.+|+-+|+|. |..+..+++.+| +.|+++|.+++..+.+++ + +. ..+++-. ++...+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-l---Ga------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-M---GA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------eEEeccccccccccccceeecC
Confidence 568999999999 888888899887 679999999998777765 2 21 1111110 000000
Q ss_pred ----------CC-CCCCccEEEEcCC-----Cch-HHHHHHhcccCCcEEE-EEEC
Q 022070 226 ----------WP-EFAPYDAIHVGAA-----APE-IPQALIDQLKPGGRMV-IPVG 263 (303)
Q Consensus 226 ----------~~-~~~~fD~Iv~~~~-----~~~-v~~~~~~~LkpGG~li-i~v~ 263 (303)
.. ....+|+||.... .+. +.++..+.+|||+.++ +.+.
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 01 1246899988772 222 4578899999999977 4443
No 294
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.99 E-value=0.053 Score=48.71 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=65.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 230 (303)
.++++++||-.|+|. |..+..+|+..| .+ |++++.+++..+.+++. +.. +.+.....+ .. ...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~---~~-~~~ 158 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPA-----DPVAADTAD---EI-GGR 158 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCC-----ccccccchh---hh-cCC
Confidence 478899999999987 888888888876 45 99999999888776653 100 111100000 01 224
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.+|+|+.........+...+.|+++|+++.
T Consensus 159 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 159 GADVVIEASGSPSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCEEEEccCChHHHHHHHHHhcCCcEEEE
Confidence 689999875555667788899999999986
No 295
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.98 E-value=0.067 Score=50.02 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRKGWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D---~~~~~~~ 228 (303)
.++++++||-.|+|+ |..+..+|+..|. ..|++++.+++..+.+++ .+.. .-+.....+ ..+ ...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~-~~~ 225 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS----LGAM-----QTFNSREMSAPQIQS-VLR 225 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc-----eEecCcccCHHHHHH-Hhc
Confidence 367899999999988 8888889998862 247899999988887643 2221 000100001 001 111
Q ss_pred CCCcc-EEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYD-AIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD-~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+| +|+-........+...+.|++||++++
T Consensus 226 ~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 226 ELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 23577 666665556677888899999999886
No 296
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.89 E-value=0.027 Score=49.93 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCccHHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCCCC-----C
Q 022070 155 KPGMHALDIGSGTGYLTACF-ALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRKGW-----P 227 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~l-A~~~g~~~~V~gvDis~~~l~~A~~~~~~~-~~~~~~~~~~v~~~~~D~~~~~-----~ 227 (303)
++.-++||||.|--..=-.+ .+.|| .+.+|.|+++..++.|+..+..+ ++. ..++++...-.+.+ -
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l~-----~~I~lr~qk~~~~if~giig 149 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGLE-----RAIRLRRQKDSDAIFNGIIG 149 (292)
T ss_pred cCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcchh-----hheeEEeccCcccccccccc
Confidence 35568899999875432222 33444 68999999999999999988776 333 34666554433322 1
Q ss_pred CCCCccEEEEcCCCchHHHHHH
Q 022070 228 EFAPYDAIHVGAAAPEIPQALI 249 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~ 249 (303)
..+.||.+.|+.+++.-.+.+.
T Consensus 150 ~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 150 KNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred ccceeeeEecCCCcchhHHHHH
Confidence 2478999999999976655443
No 297
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.88 E-value=0.08 Score=49.57 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCcccCCCCcChHHHHHHHHHHHHccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc
Q 022070 128 PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 206 (303)
Q Consensus 128 ~~~~~~g~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~ 206 (303)
.-.+|||.+-- ....+...+ +++|++|.-+|||. |..+..-|+..|. .+++++|++++.+++|++. |.
T Consensus 163 a~llGCgV~TG----~Gav~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----GA 231 (366)
T COG1062 163 ACLLGCGVTTG----IGAVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----GA 231 (366)
T ss_pred eEEEeeeeccC----hHHhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc----CC
Confidence 33467775443 244556555 89999999999998 8888888888765 7999999999999999763 22
Q ss_pred CCccCCCCEEEEEc----CCCC---CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 207 APLLKEGSLSVHVG----DGRK---GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 207 ~~~~~~~~v~~~~~----D~~~---~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. +++.. |+.+ .+.. +..|..+......++++..++.++++|..++
T Consensus 232 T--------~~vn~~~~~~vv~~i~~~T~-gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 232 T--------HFVNPKEVDDVVEAIVELTD-GGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred c--------eeecchhhhhHHHHHHHhcC-CCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 1 22211 1111 1111 4678888777777888999999999999886
No 298
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.86 E-value=0.044 Score=51.77 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCC--C---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDG--R---KG 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~--~---~~ 225 (303)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+.. .+ .....+. . ..
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~----~ga~------~~i~~~~~~~~~~~~~~~ 249 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE----FGAT------DFINPKDSDKPVSEVIRE 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCC------cEeccccccchHHHHHHH
Confidence 478899999999987 8888889998762 279999999988887754 2221 11 1110000 0 00
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
... +.+|+|+.........+...+.++++ |+++.
T Consensus 250 ~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 250 MTG-GGVDYSFECTGNADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhcccCCCEEEE
Confidence 112 46899997766556677788899885 88876
No 299
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.86 E-value=0.077 Score=46.54 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=86.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccH----HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGY----LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 219 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~----~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~ 219 (303)
+.++..+... ...+.+++++|+-|. ++..+|.+ ...+++++|-.+++.....++.+...++. +.++|+.
T Consensus 30 aEfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-----~~vEfvv 102 (218)
T PF07279_consen 30 AEFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS-----DVVEFVV 102 (218)
T ss_pred HHHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc-----ccceEEe
Confidence 5666777633 344678888765432 22222222 13389999999988888888888776654 4579999
Q ss_pred cCCCC-CCCCCCCccEEEEcCCCchHHHHHHhcc--cCCcEEEEEECCCceeEEEEEEcCCCCEE----EEEeeeEEEee
Q 022070 220 GDGRK-GWPEFAPYDAIHVGAAAPEIPQALIDQL--KPGGRMVIPVGNIFQDLKVVDKNQDGSLS----IWSETSVRYVP 292 (303)
Q Consensus 220 ~D~~~-~~~~~~~fD~Iv~~~~~~~v~~~~~~~L--kpGG~lii~v~~~~~~~~~~~~~~~~~~~----~~~l~~v~f~P 292 (303)
++..+ ..+.....|+++.+.-.++....+.+.+ .|.|-+++ ..|..+.. ....+|. .+......|+|
T Consensus 103 g~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV-~~Na~~r~-----~~~~~w~~~~~~~r~Vrsv~LP 176 (218)
T PF07279_consen 103 GEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV-CYNAFSRS-----TNGFSWRSVLRGRRVVRSVFLP 176 (218)
T ss_pred cCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE-EeccccCC-----cCCccHHHhcCCCCceeEEEec
Confidence 88543 3444567999999998877765555544 44566554 23332210 0111232 12334677888
Q ss_pred ccccchhc
Q 022070 293 LTSRDAQL 300 (303)
Q Consensus 293 l~~~~~~~ 300 (303)
.-++.+=+
T Consensus 177 IG~GleVt 184 (218)
T PF07279_consen 177 IGKGLEVT 184 (218)
T ss_pred cCCCeEEE
Confidence 87766543
No 300
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.85 E-value=0.018 Score=50.64 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=54.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CC--CCCCccE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WP--EFAPYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~--~~~~fD~ 234 (303)
-++|||||=+......-... -.|+.||+++. .-.+...|..+- ++ +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeE
Confidence 58999999876654433322 36999998752 224555666553 22 3478999
Q ss_pred EEEcCCCc---------hHHHHHHhcccCCcE-----EEEEEC
Q 022070 235 IHVGAAAP---------EIPQALIDQLKPGGR-----MVIPVG 263 (303)
Q Consensus 235 Iv~~~~~~---------~v~~~~~~~LkpGG~-----lii~v~ 263 (303)
|.++-++. ++.+.+.+.|+|+|. |++.++
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 98877653 345788899999999 666443
No 301
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=95.79 E-value=0.1 Score=50.21 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=67.2
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCC-
Q 022070 153 NLKPGMHALDIG-SGT-GYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK- 224 (303)
Q Consensus 153 ~l~~g~~VLDIG-cG~-G~~t~~lA~~~g~~-~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~----D~~~- 224 (303)
.+++|++|+-+| +|. |..+..+|+..|.. .+|+++|.+++.++.+++.+...... .+ ....++.. +..+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~G-a~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RG-IELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cC-ceEEEECCCccccHHHH
Confidence 468899999997 576 88888888886421 37999999999999987743211000 00 01111110 1100
Q ss_pred --CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEEE
Q 022070 225 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 225 --~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v 262 (303)
.......+|+|+.........+...+.++++|.+++..
T Consensus 249 v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~ 288 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFA 288 (410)
T ss_pred HHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEE
Confidence 01122368999887666667788899999998776543
No 302
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0079 Score=50.43 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCCCCc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFAPY 232 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~~~~~f 232 (303)
.|.+|||+|.|. |..+..+|... +...|...|-+++.++-.++....+.. .....+.+..-+.. ....+...|
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~---s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA---SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc---cccceehhhHHHHhhhHHHHhhCcc
Confidence 467999999997 55666667664 568999999999998887775544321 11122222211111 111122589
Q ss_pred cEEEEcCCC------chHHHHHHhcccCCcEEEEEECCCc
Q 022070 233 DAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 233 D~Iv~~~~~------~~v~~~~~~~LkpGG~lii~v~~~~ 266 (303)
|.|++.... +.+.+.+..+|+|.|..++..+..-
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 999876533 3467889999999999888776543
No 303
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.057 Score=44.68 Aligned_cols=107 Identities=27% Similarity=0.243 Sum_probs=71.9
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022070 143 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 222 (303)
Q Consensus 143 ~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~ 222 (303)
....+..+. -++..+.+|+|+|.|......|+.. - -..+|+|.++-.+..++-+.-+.++. ....|...|.
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~-~~a~GvELNpwLVaysrl~a~R~g~~-----k~trf~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-L-RPAVGVELNPWLVAYSRLHAWRAGCA-----KSTRFRRKDL 131 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-C-CcCCceeccHHHHHHHHHHHHHHhcc-----cchhhhhhhh
Confidence 345566665 3555689999999999988888763 2 46889999999999998777676665 4667777776
Q ss_pred CCCCCCCCCccEEEEcC---CCchHHHHHHhcccCCcEEEE
Q 022070 223 RKGWPEFAPYDAIHVGA---AAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 223 ~~~~~~~~~fD~Iv~~~---~~~~v~~~~~~~LkpGG~lii 260 (303)
.+... ..|..+++.+ ++..+.+.+..-+..+.+++.
T Consensus 132 wK~dl--~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDL--RDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccc--cccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 55322 3344444333 233444556666777777763
No 304
>PRK11524 putative methyltransferase; Provisional
Probab=95.65 E-value=0.042 Score=50.51 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~ 203 (303)
-.+|+.|||--||+|..+.++.+. | -+.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 589999999999999876655555 5 6899999999999999999864
No 305
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.64 E-value=0.19 Score=47.46 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC----CCC---
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRK--- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D----~~~--- 224 (303)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+. +.+ +...+ ..+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~----lGa------~~~-i~~~~~~~~~~~~v~ 250 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK----FGA------TDC-VNPKDHDKPIQQVLV 250 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCC------CEE-EcccccchHHHHHHH
Confidence 478899999999987 8888889998762 279999999998887754 222 111 11111 000
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
.... +.+|+|+.........+...+.|+++ |+++.
T Consensus 251 ~~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 251 EMTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred HHhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEE
Confidence 0112 36899998766556777888999987 88886
No 306
>PLN02827 Alcohol dehydrogenase-like
Probab=95.62 E-value=0.16 Score=48.42 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=65.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc--CCCCC---
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG--DGRKG--- 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~--D~~~~--- 225 (303)
.+++|++||-.|+|. |.++..+|+..|. ..|+++|.+++..+.|++ .+.. .+ ..... +..+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~----lGa~------~~i~~~~~~~~~~~~v~~ 258 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT----FGVT------DFINPNDLSEPIQQVIKR 258 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc------EEEcccccchHHHHHHHH
Confidence 478899999999988 8888889998762 368899999988887754 2221 11 11000 10000
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
... +.+|+|+.............+.+++| |++++
T Consensus 259 ~~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 259 MTG-GGADYSFECVGDTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEE
Confidence 011 36899998777666677888999998 99975
No 307
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.078 Score=52.18 Aligned_cols=95 Identities=23% Similarity=0.214 Sum_probs=68.4
Q ss_pred CEEEEEcCCccHHHHH---HHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 158 MHALDIGSGTGYLTAC---FALMVGPQGRAVGVEHIPELVVSSIQ-NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~---lA~~~g~~~~V~gvDis~~~l~~A~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..|+-+|+|.|-+... +|+......++++||.+|.++-..+. +...++ ++|+++..|.++-.++.+..|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------NRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------CeeEEEeccccccCCchhhcc
Confidence 3578899999976543 34444455799999999998876654 333332 589999999998554457899
Q ss_pred EEEEcC--------CCchHHHHHHhcccCCcEEE
Q 022070 234 AIHVGA--------AAPEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 234 ~Iv~~~--------~~~~v~~~~~~~LkpGG~li 259 (303)
++|+-- .-++.++-+.+.|||+|+.|
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 997531 12566778889999998766
No 308
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.61 E-value=0.2 Score=46.30 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc-CCCCCC--
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG-DGRKGW-- 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~-D~~~~~-- 226 (303)
.+++|++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++ .+. +.+ ..... +..+..
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~----lGa------~~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK----LGF------DVAFNYKTVKSLEETLKK 202 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------CEEEeccccccHHHHHHH
Confidence 4789999999994 44 888899999876 689999999888777753 222 111 11100 110000
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+.+|+|+.....+ ..+...++|+++|+++.
T Consensus 203 ~~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 203 ASPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAI 235 (325)
T ss_pred hCCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEE
Confidence 0114689998765543 45788999999999995
No 309
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=95.61 E-value=0.13 Score=47.13 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.++++.+||-.|+|. |..+..+|+..| .++++++.+++..+.+++ .+.. .+. +..+. .....
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~~----~~~~~-~~~~~ 214 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR----LGVE------TVL----PDEAE-SEGGG 214 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCc------EEe----Ccccc-ccCCC
Confidence 468899999999876 777788888876 679999999988888765 2221 111 11111 12256
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|+|+.........+.+.+.|+++|+++.
T Consensus 215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 215 FDVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 99999876555667788889999999996
No 310
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.60 E-value=0.045 Score=47.49 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 199 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~ 199 (303)
-.+|+.|||.-||+|..+.++.+. + -+.+|+|++++.++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 588999999999999876555554 5 689999999999999875
No 311
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.60 E-value=0.055 Score=51.04 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.++|++||-.|+|. |..+..+|+..| .++++++.+++..+.+.+. .+. +.+ +...+..........+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~---~Ga------~~~-i~~~~~~~~~~~~~~~ 245 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEH---LGA------DDY-LVSSDAAEMQEAADSL 245 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHh---cCC------cEE-ecCCChHHHHHhcCCC
Confidence 36889999999887 888889999886 6788888887765544332 222 111 1000100000011358
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
|+|+.........+.+.+.|+++|+++.
T Consensus 246 D~vid~~g~~~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 246 DYIIDTVPVFHPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred cEEEECCCchHHHHHHHHHhccCCEEEE
Confidence 9998876655667788899999999886
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.57 E-value=0.051 Score=51.20 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc-CCCC---C
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG-DGRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~-D~~~---~ 225 (303)
.+++|++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++.+ +. +.+ ..... +..+ .
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---Ga------~~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---GF------DEAFNYKEEPDLDAALKR 223 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---CC------CEEEECCCcccHHHHHHH
Confidence 4788999999998 54 889999999987 68999999988877765332 22 111 11000 1110 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
... +.+|+|+..... ...+.+.++|++||++++
T Consensus 224 ~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 224 YFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred HCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEEE
Confidence 112 368999876554 467788999999999885
No 313
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=95.51 E-value=0.16 Score=48.85 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=64.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC---CCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D~~~---~~~ 227 (303)
.++++++||-.|+|. |..+..+|+..|. ..++++|.+++..+.|++. +. +.+..... +..+ ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----Ga------~~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----GC------ETVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----CC------eEEecCCcccHHHHHHHHc
Confidence 478899999899988 8888889998763 3456778888888887652 21 11110000 1100 011
Q ss_pred CCCCccEEEEcCCCc--------------hHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~--------------~v~~~~~~~LkpGG~lii 260 (303)
....+|+|+.....+ ..++.+.+.+++||++++
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 123589999776654 478888999999999987
No 314
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.31 E-value=0.1 Score=51.01 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=74.3
Q ss_pred cCCCCC-EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~-~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+++-. ++|.+|||.-.++..+-+.. . ..++.+|+|+-.++....+-.+. ..-..+...|......+.+.
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G-~-~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNG-F-EDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcC-C-CCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcc
Confidence 355666 99999999998888887763 2 68999999999888776543221 14578888888877667789
Q ss_pred ccEEEEcCCCch----------------HHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPE----------------IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~----------------v~~~~~~~LkpGG~lii 260 (303)
||+|+.-+.+.+ ...++.+.|++||+.+.
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 999987665422 23678899999999764
No 315
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.30 E-value=0.2 Score=46.87 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=65.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.++++++||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++ .+.. .-+.....+..+ ....
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGAT-----DIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc-----eEecCCCCCHHHHHHHHhC
Confidence 478899999999886 8888889998763 368999999888777764 2221 001110011100 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+...........+.+.|+++|+++.
T Consensus 233 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 233 GKGVDAVIIAGGGQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCCCcEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 24699999876666677888999999999885
No 316
>PLN02494 adenosylhomocysteinase
Probab=95.25 E-value=0.072 Score=52.23 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
-.|++|+-+|+|+ |...+..++.+| .+|+++|+++.....|.. .+ ..+. +..+. ....|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~----~G---------~~vv--~leEa---l~~AD 311 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALM----EG---------YQVL--TLEDV---VSEAD 311 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHh----cC---------Ceec--cHHHH---HhhCC
Confidence 5689999999999 888888888776 689999999875444422 11 1111 11111 13579
Q ss_pred EEEEcCCCchHH-HHHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIP-QALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~-~~~~~~LkpGG~lii 260 (303)
+|+......++. ....+.+|+||+++-
T Consensus 312 VVI~tTGt~~vI~~e~L~~MK~GAiLiN 339 (477)
T PLN02494 312 IFVTTTGNKDIIMVDHMRKMKNNAIVCN 339 (477)
T ss_pred EEEECCCCccchHHHHHhcCCCCCEEEE
Confidence 999887777764 788899999999886
No 317
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.20 E-value=0.08 Score=51.16 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
..|++|+-+|+|+ |...+..++.+| .+|+++|.++.....|.. .+ ..+. +..+.. ...|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~----~G---------~~v~--~leeal---~~aD 252 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAM----DG---------FRVM--TMEEAA---KIGD 252 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHh----cC---------CEeC--CHHHHH---hcCC
Confidence 5789999999999 888888888776 789999999876544432 11 1111 111111 3469
Q ss_pred EEEEcCCCchHHH-HHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIPQ-ALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~~-~~~~~LkpGG~lii 260 (303)
+|+......+++. .....+|+|++++.
T Consensus 253 VVItaTG~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 253 IFITATGNKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 9988877777665 58889999998875
No 318
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.19 E-value=0.074 Score=54.64 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=67.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHHhccC-Cc-
Q 022070 157 GMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEHIP---ELVVSS-----------IQNIEKSAAA-PL- 209 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~------g~-----~~~V~gvDis~---~~l~~A-----------~~~~~~~~~~-~~- 209 (303)
.-+|+|+|-|+|+......+.+ .+ .-+++++|..+ +.+..+ ++....+... +.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999777766554 12 24889999754 222222 2222111110 00
Q ss_pred ----cCCC--CEEEEEcCCCCCCCCC-CCccEEEEcCCC---------chHHHHHHhcccCCcEEEEEE
Q 022070 210 ----LKEG--SLSVHVGDGRKGWPEF-APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 210 ----~~~~--~v~~~~~D~~~~~~~~-~~fD~Iv~~~~~---------~~v~~~~~~~LkpGG~lii~v 262 (303)
+..+ ++++..+|+++.++.. ..+|.|+.++-. +++++.+.++++|||.++.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1112 3467779987755533 569999999733 466789999999999999644
No 319
>PRK13699 putative methylase; Provisional
Probab=95.18 E-value=0.084 Score=46.96 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
-.+|+.|||--||+|..+..+.+. | -+.+|+|++++..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHH
Confidence 578999999999999877665554 5 68999999999999999998764
No 320
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.17 E-value=0.21 Score=46.55 Aligned_cols=95 Identities=25% Similarity=0.280 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcC-------C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGD-------G 222 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D-------~ 222 (303)
.++++.+||-.|+|. |..+..+|+..| .+ |++++.+++..+.+++. +.. .+ .....+ .
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~----g~~------~vi~~~~~~~~~~~~~~ 226 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL----GAT------HTVNVRTEDTPESAEKI 226 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc----CCc------EEeccccccchhHHHHH
Confidence 478899999988877 888888999876 45 88888888877766442 221 11 111011 0
Q ss_pred CCCCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 223 RKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 223 ~~~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.. ......+|+|+.........+...++|+++|+++.
T Consensus 227 ~~-~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 227 AE-LLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred HH-HhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 01 11224599999876665567888999999999885
No 321
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=95.16 E-value=0.18 Score=46.51 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=63.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~ 226 (303)
.++++.+||.+|+|. |..+..+|+..| .+ +++++.+++..+.+++. +. . .++..+-.+ ..
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g~------~--~~~~~~~~~~~~~~~ 221 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKL----GA------T--ETVDPSREDPEAQKE 221 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----CC------e--EEecCCCCCHHHHHH
Confidence 477889999999875 778888888875 44 88899898887776432 21 1 111111110 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+|+.............+.|+++|+++.
T Consensus 222 ~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 222 DNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred hcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 1225699999876556677788899999999986
No 322
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.14 E-value=0.3 Score=46.11 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~--D~~~---~~ 226 (303)
.+++|++||-.|+|. |..+..+|+..|. .+|++++.+++..+.+++ .+.. .-+..... +..+ ..
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK----FGVT-----EFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc-----eEEcccccchhHHHHHHHH
Confidence 478899999999987 8888889998762 279999999998887754 2221 00111100 0000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
.. +.+|+++-............+.+++| |++++
T Consensus 254 ~~-~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 254 TG-GGVDYSFECTGNIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHHhhcCCCEEEE
Confidence 12 36899987766666677788899996 88875
No 323
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.14 E-value=0.098 Score=49.90 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~-l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
++|++|+-.|+|. |..+..+|+..| .+|++++.+++. .+.++ +.+.. .+ +...+........+.+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~----~lGa~------~~-i~~~~~~~v~~~~~~~ 243 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAID----RLGAD------SF-LVTTDSQKMKEAVGTM 243 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHH----hCCCc------EE-EcCcCHHHHHHhhCCC
Confidence 5789999999987 888899999987 678999877543 44442 23321 11 1000100000011358
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
|+|+.........+.+.+.+++||+++.
T Consensus 244 D~vid~~G~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 244 DFIIDTVSAEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred cEEEECCCcHHHHHHHHHhhcCCCEEEE
Confidence 9999877666667788899999999986
No 324
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.12 E-value=0.051 Score=50.48 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=63.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~ 230 (303)
.+.++++||-.|+|. |..+..+|+..| .+|+.++.+++..+.+++ .+.. .+ .....+..+......
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~i~~~~~~~~~~~~~~~ 227 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK----LGAH------HYIDTSKEDVAEALQELG 227 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----cCCc------EEecCCCccHHHHHHhcC
Confidence 478889999999877 888888899887 579999999887777743 2221 11 111111100000113
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.+|+|+.........+.+.+.|+++|+++.
T Consensus 228 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 228 GAKLILATAPNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred CCCEEEECCCchHHHHHHHHHcccCCEEEE
Confidence 589999765445667788899999999886
No 325
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.11 Score=49.14 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 235 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~I 235 (303)
..+|+|.=+|+|.=++-.|...+. .+|+.-|+||.+++.+++|...+.. .+..++..|+...+.. ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEE
Confidence 569999999999999888888653 4899999999999999999988732 3556666776543322 3789999
Q ss_pred EEcCC--CchHHHHHHhcccCCcEEEEEE
Q 022070 236 HVGAA--APEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 236 v~~~~--~~~v~~~~~~~LkpGG~lii~v 262 (303)
=++.- .....+.+.+.++.||.+.+..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 77743 3456788999999999999854
No 326
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.12 E-value=0.084 Score=51.32 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
-.|++|+-+|+|+ |...+..++..| .+|+.+|+++.....+.. .+ .++. +..+. ...+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~----~G---------~~v~--~l~ea---l~~aD 269 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAM----DG---------FRVM--TMEEA---AELGD 269 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHh----cC---------CEec--CHHHH---HhCCC
Confidence 4789999999999 888777888776 689999999876544432 11 1111 11111 13579
Q ss_pred EEEEcCCCchHHH-HHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIPQ-ALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~~-~~~~~LkpGG~lii 260 (303)
+|+......++++ ...+.+|+|++++.
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEE
Confidence 9998877777665 68889999988775
No 327
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.10 E-value=0.073 Score=49.36 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCCCCCCCCcc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~fD 233 (303)
++.+||..|+|. |..+..+|+..|. .++++++.++...+.+++. +.. .+ .....+........+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~----g~~------~vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAM----GAD------ETVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCC------EEEcCCchhhhhhhccCCCcc
Confidence 788999999887 7788888888752 2789999888877765442 211 11 000000111111224599
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|+.........+.+.+.|+++|+++.
T Consensus 234 ~vld~~g~~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 234 VVFEASGAPAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 999876655667888999999999986
No 328
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.07 E-value=0.2 Score=45.14 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEEEcCCCCCC---CCCCC
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGW---PEFAP 231 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~---~~~~~ 231 (303)
...+|||+|+|+|..++.+|..++ ..|+..|...- ++..+.+...+... ..++ ..+.+..-+..... ...+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKV-VENLKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhh-HHHHHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCC
Confidence 355799999999988888888765 67777775433 33333332222111 0011 13333333332211 11134
Q ss_pred -ccEEEEcC------CCchHHHHHHhcccCCcEEEE
Q 022070 232 -YDAIHVGA------AAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 -fD~Iv~~~------~~~~v~~~~~~~LkpGG~lii 260 (303)
||+|+... .++.+...+...|..+|.+++
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 78887654 446677788888888885554
No 329
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.03 E-value=0.27 Score=45.18 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=63.2
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~ 226 (303)
.+++|++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++ .+. +.+ .....+..+ ..
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga------~~vi~~~~~~~~~~v~~~ 207 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGF------DAVFNYKTVSLEEALKEA 207 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------CEEEeCCCccHHHHHHHH
Confidence 4788999999984 44 888888999887 689999999888777755 222 111 110011110 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.. +.+|+|+....- ...+...+.|+++|+++.
T Consensus 208 ~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 208 AP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CC-CCcEEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 12 468999876554 566788999999999875
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.03 E-value=0.39 Score=44.20 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~ 230 (303)
.++++.+||-.|+|. |..+..+|+..| .+|++++.+++..+.+++ . +.. .+ .....+.... .. +
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~~------~~~~~~~~~~~~~-~~-~ 224 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK-L---GAD------EVVDSGAELDEQA-AA-G 224 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-h---CCc------EEeccCCcchHHh-cc-C
Confidence 478889999999985 888888888876 689999999888777643 2 211 11 0000000000 11 4
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.+|.++...........+.+.|+++|+++..
T Consensus 225 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 225 GADVILVTVVSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCEEEECCCcHHHHHHHHHhcccCCEEEEE
Confidence 6899987655556778888999999999864
No 331
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.03 E-value=0.4 Score=44.11 Aligned_cols=90 Identities=24% Similarity=0.226 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.++++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ .+.. . +. +.... ....
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~--~~--~~~~~--~~~~ 225 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE----LGAD------W--AG--DSDDL--PPEP 225 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----hCCc------E--Ee--ccCcc--CCCc
Confidence 478888999999887 777778888876 689999888877666633 2221 1 11 11111 1245
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|.++.........+.+.+.|+++|+++.
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVL 254 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEE
Confidence 89888754445667888999999999995
No 332
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=94.94 E-value=0.44 Score=44.65 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCC------C
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGR------K 224 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~------~ 224 (303)
.+++.+||-.|+|. |..+..+|+..| . +|++++.+++..+.+++ .+.. .+ .....+.. .
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~------~vi~~~~~~~~~~~~~i~ 242 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELARE----FGAD------ATIDIDELPDPQRRAIVR 242 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----cCCC------eEEcCcccccHHHHHHHH
Confidence 35888999999887 888888999876 5 89999988887766643 2221 11 11000000 0
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.......+|+|+.........+...+.|+++|+++.
T Consensus 243 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 243 DITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEE
Confidence 011224699999776555667788899999999985
No 333
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.84 E-value=0.1 Score=47.77 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=51.7
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 236 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv 236 (303)
+|+|+.||.|.++.-+.+. |- ..+.++|+++..++..++|+.. .+..+|..+.... .+.+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEE
Confidence 6999999999998888776 42 5688999999999888877532 1445566554322 35799999
Q ss_pred EcCCCc
Q 022070 237 VGAAAP 242 (303)
Q Consensus 237 ~~~~~~ 242 (303)
.+.++.
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 888763
No 334
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=94.83 E-value=0.36 Score=45.04 Aligned_cols=97 Identities=24% Similarity=0.172 Sum_probs=64.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~ 227 (303)
.++++.+||-.|+|. |..+..+|+..| . +|++++.+++..+.+++. +.. .-+.....+..+. ..
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G--~~~v~~~~~~~~~~~~~~~~----ga~-----~~i~~~~~~~~~~l~~~~ 237 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAG--ASKIIVSEPSEARRELAEEL----GAT-----IVLDPTEVDVVAEVRKLT 237 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh----CCC-----EEECCCccCHHHHHHHHh
Confidence 467899999999876 778888888876 5 789999998888777542 221 0011111111000 11
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+|+.........+.+.+.|+++|+++.
T Consensus 238 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 238 GGGGVDVSFDCAGVQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhccCCCEEEE
Confidence 113599999877666677888899999999886
No 335
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.81 E-value=0.14 Score=47.73 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc-CCCC---C
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG-DGRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~-D~~~---~ 225 (303)
.+++|++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++.+ +. +.+ ..... +..+ .
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~l---Ga------~~vi~~~~~~~~~~~i~~ 216 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKL---GF------DDAFNYKEEPDLDAALKR 216 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---CC------ceeEEcCCcccHHHHHHH
Confidence 4789999999997 44 888888999887 68999998888877776532 22 111 11111 1110 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
... ..+|+|+..... .......++|+++|+++.
T Consensus 217 ~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 217 YFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred hCC-CCcEEEEECCCH-HHHHHHHHHhccCcEEEE
Confidence 112 468999876554 567788999999999985
No 336
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.76 E-value=0.37 Score=44.76 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCC--CEEEEEcC-Cc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---
Q 022070 154 LKPG--MHALDIGS-GT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK--- 224 (303)
Q Consensus 154 l~~g--~~VLDIGc-G~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~--- 224 (303)
++++ ++||-.|+ |. |..+..+|+..| . +|++++.+++..+.+++.+ +. +.+ .....+..+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~l---Ga------~~vi~~~~~~~~~~i~ 218 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSEL---GF------DAAINYKTDNVAERLR 218 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhc---CC------cEEEECCCCCHHHHHH
Confidence 5655 89999997 43 888888999876 5 7999999988777766532 22 111 100011100
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.... ..+|+|+....... .+...++|+++|+++.
T Consensus 219 ~~~~-~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 219 ELCP-EGVDVYFDNVGGEI-SDTVISQMNENSHIIL 252 (345)
T ss_pred HHCC-CCceEEEECCCcHH-HHHHHHHhccCCEEEE
Confidence 0112 46999987655443 5788899999999986
No 337
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.76 E-value=0.063 Score=49.80 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.++++.+||..|+|. |..+..+|+..| .+|+++..+++..+.+++. +.. +-+.....+..+ ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~----g~~-----~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAREL----GAD-----DTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHh----CCC-----EEecCcccCHHHHHHHHhC
Confidence 478899999999876 888889999876 7899998888887776442 111 001111111101 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+...........+.+.|+++|+++.
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 24589999876555677888899999999885
No 338
>PTZ00357 methyltransferase; Provisional
Probab=94.74 E-value=0.19 Score=51.22 Aligned_cols=99 Identities=23% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEEcCCccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHH---HHhccCCccCCCCEEEEEcCCCCCCCC----
Q 022070 159 HALDIGSGTGYLTACF---ALMVGPQGRAVGVEHIPELVVSSIQNI---EKSAAAPLLKEGSLSVHVGDGRKGWPE---- 228 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~l---A~~~g~~~~V~gvDis~~~l~~A~~~~---~~~~~~~~~~~~~v~~~~~D~~~~~~~---- 228 (303)
.|+-+|+|.|-+.... ++..+-..++++||.++..+.....+. ..+........+.|+++..|.+.-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999866443 444444579999999976554444443 222110001124699999999874321
Q ss_pred -------CCCccEEEEc--CC------CchHHHHHHhcccC----CcE
Q 022070 229 -------FAPYDAIHVG--AA------APEIPQALIDQLKP----GGR 257 (303)
Q Consensus 229 -------~~~fD~Iv~~--~~------~~~v~~~~~~~Lkp----GG~ 257 (303)
.+++|+||+- +. .++.++-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1479999873 22 25667777888887 776
No 339
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.029 Score=54.63 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CCC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFA 230 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~ 230 (303)
.++-+|||.=|++|.-+...|+.++.-.+|++-|.++..++..++|++.+++. +.++....|+....- ...
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHHHHhcccccc
Confidence 45668999999999999888888765568999999999999999999988665 466777777653211 126
Q ss_pred CccEEEEcC--CCchHHHHHHhcccCCcEEEEEE
Q 022070 231 PYDAIHVGA--AAPEIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 231 ~fD~Iv~~~--~~~~v~~~~~~~LkpGG~lii~v 262 (303)
.||+|=.+. ....+++.+.+.++.||+|.+.+
T Consensus 183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 899998885 44567899999999999999865
No 340
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.40 E-value=0.43 Score=44.19 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~ 227 (303)
.++++.+||..|+|. |..+..+|+..|. ..+++++.++...+.+++. +. +.+ .....+..+ ...
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~----g~------~~vi~~~~~~~~~~i~~~~ 232 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEA----GA------TDIINPKNGDIVEQILELT 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHh----CC------cEEEcCCcchHHHHHHHHc
Confidence 467889999988765 7788888888752 3788888887777666542 21 111 111111100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+|+.........+...+.|+++|+++.
T Consensus 233 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 233 GGRGVDCVIEAVGFEETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEE
Confidence 224689998765554577888899999999885
No 341
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.39 E-value=0.47 Score=44.07 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~--~~~~~~ 229 (303)
.+++.+||-.|+|. |..+..+|+..| . +|++++-+++..+.+++. +.. .-+.....+.. ......
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~ 229 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKM----GAD-----VVINPREEDVVEVKSVTDG 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----Ccc-----eeeCcccccHHHHHHHcCC
Confidence 46788998888876 888888899876 4 688887777776665542 211 00111111110 001122
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+.+|+|+......+....+.+.|+++|+++.
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 5689999876666677788899999999886
No 342
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=94.26 E-value=0.71 Score=43.02 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 226 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------~~ 226 (303)
++++.+||-.|+|. |..+..+|+..|. .+|++++.+++..+.+++ .+.. .+....-.. ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA----AGAD--------VVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCc--------EEecCCCccHHHHHHHH
Confidence 45788999999887 8888889998763 378899988887777643 2211 111111000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.. +.+|+|+.........+.+.+.|+++|+++.
T Consensus 240 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 240 AG-GGVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 11 2689999776656678888999999999985
No 343
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.24 E-value=0.2 Score=46.99 Aligned_cols=99 Identities=22% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~ 227 (303)
.+++|++||-.|+.. |.++..+|+..| ..++++.-+++..+.+++ .+.. .-+.+...|..+. +.
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~----lGAd-----~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKE----LGAD-----HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHh----cCCC-----EEEcCCcccHHHHHHHHc
Confidence 478899999999544 789999999986 477777777766665443 3321 1122222222221 11
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEEEEC
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~ 263 (303)
....+|+|+....-+.+ ....+.|+++|+++..-.
T Consensus 208 ~g~gvDvv~D~vG~~~~-~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDTVGGDTF-AASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEECCCHHHH-HHHHHHhccCCEEEEEec
Confidence 21369999887766544 457888999999997443
No 344
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.23 E-value=0.41 Score=45.15 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=65.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D---~~~---~ 225 (303)
.++++++||-.|+|. |..+..+|+..|. ..+++++.++...+.+++. +. + .++..+ ..+ .
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~~----g~------~--~~i~~~~~~~~~~v~~ 249 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKEL----GA------T--HVINPKEEDLVAAIRE 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----CC------c--EEecCCCcCHHHHHHH
Confidence 367889999999877 8888889998863 2699999998887766542 11 1 111111 000 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.. ...+|+|+.........+.+.+.|+++|+++.
T Consensus 250 ~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 250 IT-GGGVDYALDTTGVPAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred Hh-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEE
Confidence 11 24689999876666677888999999999886
No 345
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.22 E-value=0.079 Score=49.21 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+.||++|--+|.|- |.++..+|+++| .+|+++|.+...-+.|-++ +|. +..-....|-...-.-.+.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~---LGA------d~fv~~~~d~d~~~~~~~~ 246 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKS---LGA------DVFVDSTEDPDIMKAIMKT 246 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHh---cCc------ceeEEecCCHHHHHHHHHh
Confidence 377999999999876 999999999998 7999999987655555443 332 1211111111000000134
Q ss_pred ccEEEEcCC--CchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAA--APEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~--~~~v~~~~~~~LkpGG~lii 260 (303)
.|.++-... .++-++.+.++||++|.+++
T Consensus 247 ~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 247 TDGGIDTVSNLAEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred hcCcceeeeeccccchHHHHHHhhcCCEEEE
Confidence 455543333 66777889999999999997
No 346
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.26 Score=45.70 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=70.2
Q ss_pred cChHHHHHHHHHHHHccCCC------CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH---HHhc--
Q 022070 137 ISAPHMHATCLQLLEENLKP------GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI---EKSA-- 205 (303)
Q Consensus 137 i~~p~~~~~~l~~l~~~l~~------g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~---~~~~-- 205 (303)
..+....+-+++.+.....+ .-+||.-|||.|.++.-+|.. |. .+-|-|.|--|+--..=.+ +..+
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~ 201 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFMLICSSFILNYCKQENQF 201 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHHHHHHHHHHhhccCCcE
Confidence 33444566777777654433 458999999999999999998 43 4556677766543221111 1000
Q ss_pred ------------------cC----Cc-------cCCCCEEEEEcCCCCCCCC---CCCccEEEEcCCC---c---hHHHH
Q 022070 206 ------------------AA----PL-------LKEGSLSVHVGDGRKGWPE---FAPYDAIHVGAAA---P---EIPQA 247 (303)
Q Consensus 206 ------------------~~----~~-------~~~~~v~~~~~D~~~~~~~---~~~fD~Iv~~~~~---~---~v~~~ 247 (303)
+. ++ -...+.++..||..+.... .+.||+|+...-+ + +.++.
T Consensus 202 ~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~t 281 (369)
T KOG2798|consen 202 TIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDT 281 (369)
T ss_pred EEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHH
Confidence 00 00 0012334445665543332 2479999766422 2 34578
Q ss_pred HHhcccCCcEEE
Q 022070 248 LIDQLKPGGRMV 259 (303)
Q Consensus 248 ~~~~LkpGG~li 259 (303)
+.+.|||||.-+
T Consensus 282 I~~iLk~GGvWi 293 (369)
T KOG2798|consen 282 IYKILKPGGVWI 293 (369)
T ss_pred HHHhccCCcEEE
Confidence 899999999765
No 347
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=94.13 E-value=1.1 Score=41.68 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.+.++.+||-.|+|. |..+..+|+..|. .+|++++.++...+.+++ .+.. .-+.....+... ....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~ 232 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGAT-----HTVNSAKGDAIEQVLELTD 232 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC-----ceeccccccHHHHHHHHhC
Confidence 367888998888876 7777788888753 478889988877666653 2221 011111111100 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+.........+.+.+.|+++|+++.
T Consensus 233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 233 GRGVDVVIEAVGIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCcEEEE
Confidence 24699998765555567788899999999885
No 348
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=94.11 E-value=0.62 Score=43.24 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
..++.+||-.|+|. |..+..+|+..| .+ |++++.++...+.+++. +.. .-+.....+..+ ....
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~l~~~~~ 227 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKM----GAT-----YVVNPFKEDVVKEVADLTD 227 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----CCc-----EEEcccccCHHHHHHHhcC
Confidence 56788988888775 778888888876 54 88888887776665432 211 001111111100 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+.........+.+.+.|+++|+++.
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEE
Confidence 24689999875556677888999999999876
No 349
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.04 E-value=0.1 Score=48.32 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=70.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-C
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D 221 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D 221 (303)
..++...+ ++||.+|.-+|+|. |...+.-|+..|. ++++|||++++..+.|++. |.. +++.- |
T Consensus 182 GAa~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f----GaT--------e~iNp~d 246 (375)
T KOG0022|consen 182 GAAWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF----GAT--------EFINPKD 246 (375)
T ss_pred hhhhhhcc--cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc----Ccc--------eecChhh
Confidence 34445454 89999999999999 6666777777655 7999999999999998763 221 11111 2
Q ss_pred CCCCC------CCCCCccEEEEcCCCchHHHHHHhcccCC-cEEEE
Q 022070 222 GRKGW------PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 260 (303)
Q Consensus 222 ~~~~~------~~~~~fD~Iv~~~~~~~v~~~~~~~LkpG-G~lii 260 (303)
..+.. ..++.+|.-+-.....++++++....+.| |.-++
T Consensus 247 ~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 247 LKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred ccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 22210 01267888887777778888888888887 76554
No 350
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=93.99 E-value=0.65 Score=43.72 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWP 227 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~ 227 (303)
+.++.+||-.|+|. |..+..+|+..| .+ +++++.+++..+.+++ .+.. .+ .....+..+ ...
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~------~v~~~~~~~~~~~l~~~~ 252 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGAT------HTVNAAKEDAVAAIREIT 252 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCc------eEecCCcccHHHHHHHHh
Confidence 57788998888875 788888888876 45 8889888887776643 2211 11 000001000 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
....+|+|+.........+.+.++|+++|+++..
T Consensus 253 ~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 253 GGRGVDVVVEALGKPETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEE
Confidence 2246999997655444677888999999998864
No 351
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.98 E-value=0.11 Score=49.73 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 157 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 157 g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
+.+|+-+|+|. |..++..++.+| .+|+.+|.+++..+.+.+.+.. .+.....+..+.......+|+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEE
Confidence 45799999997 888888888876 6899999998876655443211 1211111100000011468999
Q ss_pred EEcCCC-----ch-HHHHHHhcccCCcEEEE
Q 022070 236 HVGAAA-----PE-IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 236 v~~~~~-----~~-v~~~~~~~LkpGG~lii 260 (303)
+..... +. +.+...+.+|||++++-
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 987422 22 34677788999987773
No 352
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.95 E-value=0.14 Score=45.38 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=59.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---
Q 022070 158 MHALDIGSGTGYLTACFALMVGP----Q----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--- 226 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~----~----~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--- 226 (303)
.+|+|+++.+|..+..+++.+.. . .++++||+.+.. ..+.|.-+++|+...-
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------------ccCceEEeecccCCHhHHH
Confidence 58999999999999999988643 1 138999986431 1145677788876521
Q ss_pred -----CCCCCccEEEEcCCC-----chH---H---------HHHHhcccCCcEEEE
Q 022070 227 -----PEFAPYDAIHVGAAA-----PEI---P---------QALIDQLKPGGRMVI 260 (303)
Q Consensus 227 -----~~~~~fD~Iv~~~~~-----~~v---~---------~~~~~~LkpGG~lii 260 (303)
...++.|+|+|+++- +++ . ......|||||.|+.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 123588999999853 222 1 233468999999996
No 353
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.89 E-value=0.27 Score=45.54 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~~~~~fD 233 (303)
.+.+|+-+|+|. |...+..++..| .+|+.+|.+++..+.+++ .+. .+.. .+..+ ....+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~----~G~---------~~~~~~~l~~---~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE----MGL---------SPFHLSELAE---EVGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCC---------eeecHHHHHH---HhCCCC
Confidence 578999999998 666666666666 699999999876555432 221 1111 11111 124689
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEE
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~li 259 (303)
+|+...+..-+.+...+.+++|+.++
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALII 238 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEE
Confidence 99987665445577788899988776
No 354
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.89 E-value=0.083 Score=51.55 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-------CC
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-------WP 227 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~ 227 (303)
..+..+|-+|-|.|.+..++-..+ +..++++||++|++++.|++++.-..- .+..+...|+.+. -.
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccc
Confidence 445688999999999999998886 458999999999999999988743211 1223333344321 12
Q ss_pred CCCCccEEEEcCCC---------------chHHHHHHhcccCCcEEEEEEC
Q 022070 228 EFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~---------------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
+...||+++.+..- +.+...+...|.|.|.+++-+-
T Consensus 367 ~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred cccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 44689999876432 2234567789999999998554
No 355
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=93.77 E-value=0.67 Score=42.79 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEE-cCCCCCC-C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRKGW-P 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~-g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~-~D~~~~~-~ 227 (303)
.++++.+||-.|+|. |..+..+|+.. | .++++++.+++..+.+++ .+.. .+ .... .+..+.. .
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~v~~~~~~~~~~~~v~~ 226 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAKE----VGAD------LTINSKRVEDVAKIIQE 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH----cCCc------EEecccccccHHHHHHH
Confidence 478899999999876 78888888863 5 789999999998888743 2221 11 0000 0100000 0
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+.+|.++.+.......+.+.+.|+++|+++.
T Consensus 227 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 227 KTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred hcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEE
Confidence 113478565555556677888999999999886
No 356
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=93.73 E-value=1.3 Score=41.68 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~ 227 (303)
.+.++.+||-.|+|. |..+..+|+..| . +|++++.++...+.+++ .+.. .-+.....+... ...
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~----~g~~-----~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARR----FGAT-----HTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----hCCe-----EEeCCCCccHHHHHHHHc
Confidence 467889999998875 888888888876 4 48899888887776642 2211 000000001100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
....+|+|+.........+.+.+.|+++|+++..
T Consensus 248 ~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 248 DGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 2246899987665556677889999999999863
No 357
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=93.73 E-value=0.98 Score=41.71 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPEF 229 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~---~~~~~~ 229 (303)
+.++.+||-.|+|. |..+..+|+..|. .+|++++.+++..+.+++ .+.. .+--...+.. ......
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGAD------HVLNASDDVVEEVRELTGG 233 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCc------EEEcCCccHHHHHHHHhCC
Confidence 57789999999876 7777778887653 578889888877666533 2221 1100000000 001122
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+|+|+.........+.+.+.|+++|+++.
T Consensus 234 ~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 234 RGADAVIDFVGSDETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 4699999876655677888899999999986
No 358
>PRK10083 putative oxidoreductase; Provisional
Probab=93.69 E-value=0.21 Score=46.26 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=61.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHH-hCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF- 229 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~-~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 229 (303)
.+++|++||-.|+|. |..+..+|+. .|. ..+++++.+++..+.+++. +... -+.....+..+.....
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~----Ga~~-----~i~~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKES----GADW-----VINNAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHh----CCcE-----EecCccccHHHHHhcCC
Confidence 478899999999876 7777777875 452 3588899988888777542 2210 0111111111111111
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+|+|+.........+...+.|+++|+++.
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2356887766555667788899999999986
No 359
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.63 E-value=0.21 Score=49.16 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
-.|++|+-+|+|+ |...+..++..| .+|+.+|.++.....+.. .+ +.+. +..+. ....|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~----~G---------~~~~--~leel---l~~AD 311 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAM----EG---------YQVV--TLEDV---VETAD 311 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHh----cC---------ceec--cHHHH---HhcCC
Confidence 3688999999998 777777777666 689999998776543322 12 1111 11111 14579
Q ss_pred EEEEcCCCchHH-HHHHhcccCCcEEEE
Q 022070 234 AIHVGAAAPEIP-QALIDQLKPGGRMVI 260 (303)
Q Consensus 234 ~Iv~~~~~~~v~-~~~~~~LkpGG~lii 260 (303)
+|++.....+++ ....+.+|||++++-
T Consensus 312 IVI~atGt~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 312 IFVTATGNKDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred EEEECCCcccccCHHHHhccCCCcEEEE
Confidence 999887766766 588899999998875
No 360
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.62 E-value=0.42 Score=40.18 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCccE
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-SSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDA 234 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~-~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~fD~ 234 (303)
|++++-+|+..-..-..+.+. |. .+++.||.++--++ ..+.++. ++...|....+ ...++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA-~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GA-AKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CC-ceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchh
Confidence 678899998876655444444 43 68999987642211 0011100 11111211111 11256787
Q ss_pred EEEcCCCchH-----------------HHHHHhcccCCcEEEEEECCCc
Q 022070 235 IHVGAAAPEI-----------------PQALIDQLKPGGRMVIPVGNIF 266 (303)
Q Consensus 235 Iv~~~~~~~v-----------------~~~~~~~LkpGG~lii~v~~~~ 266 (303)
+.+...++|+ +..+.+.||+||.+++.++-+.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 7776665443 4577889999999999777653
No 361
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.13 Score=48.44 Aligned_cols=101 Identities=22% Similarity=0.182 Sum_probs=60.9
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~~~fD~ 234 (303)
+++||+|.|+|.-...+-..++.-..++.+|.|+..-+....-...... ........|... .++....|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t------~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST------EKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc------ccCCCCCCccchhccCCCccceeeh
Confidence 5799999999987766666664445788888888776655433222111 122222233322 1223356776
Q ss_pred EEEcCCC-----ch----HHHHHHhcccCCcEEEEEECC
Q 022070 235 IHVGAAA-----PE----IPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 235 Iv~~~~~-----~~----v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+...-+ +. ..+.+..++.|||.+++.-+.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 6654321 22 567888999999999985543
No 362
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.41 E-value=0.74 Score=42.66 Aligned_cols=99 Identities=21% Similarity=0.322 Sum_probs=62.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 230 (303)
.++++.+||..|+|. |..+..+|+..| .+ +++++.+++..+.+++ .+....+...... ...... .....
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~--~~~~~~-~~~~~ 226 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARE----LGADDTINPKEED--VEKVRE-LTEGR 226 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----cCCCEEecCcccc--HHHHHH-HhCCC
Confidence 467889999999877 888888888876 44 8999888877666532 2211000000000 000001 11223
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.+|+|+...........+.++|+++|+++.
T Consensus 227 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 227 GADLVIEAAGSPATIEQALALARPGGKVVL 256 (343)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 599999876555677888999999999876
No 363
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.34 E-value=1.5 Score=36.95 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022070 141 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 220 (303)
Q Consensus 141 ~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~ 220 (303)
.+...+...+.....++.+|+=|||=+-+....- ...++.+++-.|++... ...+ .+ .++.-
T Consensus 10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~-------~~-~F~fy 71 (162)
T PF10237_consen 10 ETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFG-------GD-EFVFY 71 (162)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcC-------Cc-ceEEC
Confidence 3445555555433456789999999876655443 12345789999998543 3321 13 45555
Q ss_pred CCCCCCC----CCCCccEEEEcCCC--ch----HHHHHHhcccCCcEEEEEECCC
Q 022070 221 DGRKGWP----EFAPYDAIHVGAAA--PE----IPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 221 D~~~~~~----~~~~fD~Iv~~~~~--~~----v~~~~~~~LkpGG~lii~v~~~ 265 (303)
|+..... ..+.||+|+++.++ ++ ..+.+..++|+++.+++..+..
T Consensus 72 D~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 72 DYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 6554221 12789999999987 22 2355666779999999877754
No 364
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.26 E-value=0.95 Score=38.25 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCC--HHHHHH---HHHHHHHhccCCccCCCCEEE-EEcCCCCCCC----CCCC
Q 022070 162 DIGSGTGYLTACFALMVGPQGRAVGVEHI--PELVVS---SIQNIEKSAAAPLLKEGSLSV-HVGDGRKGWP----EFAP 231 (303)
Q Consensus 162 DIGcG~G~~t~~lA~~~g~~~~V~gvDis--~~~l~~---A~~~~~~~~~~~~~~~~~v~~-~~~D~~~~~~----~~~~ 231 (303)
=||=|.=.++..+++..+....+++.-.+ ++..+. +.+++..+.- ..+.+ .-.|+.+... ...+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~------~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE------LGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh------cCCccccCCCCCcccccccccCCc
Confidence 46778888999999998645677666544 333332 2344444311 12322 3345544221 2378
Q ss_pred ccEEEEcCCC-------------------chHHHHHHhcccCCcEEEEEECCC
Q 022070 232 YDAIHVGAAA-------------------PEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 232 fD~Iv~~~~~-------------------~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
||+|+-+.+. .+.++.+.++|+++|.+.+.+-+.
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999988653 223467888999999999988765
No 365
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=93.24 E-value=1.1 Score=42.15 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~--D~~~---~~ 226 (303)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++ .+.. .-+..... +..+ ..
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ----LGAT-----ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----hCCC-----eecccccccchHHHHHHHH
Confidence 478899999999887 8888888998763 258888888888777743 2221 01111111 1000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhccc-CCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~Lk-pGG~lii 260 (303)
.. +.+|+|+...........+.+.|+ ++|+++.
T Consensus 250 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 250 TD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEE
Confidence 12 468999976554566777888999 9999886
No 366
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=93.19 E-value=0.74 Score=43.78 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc---CCCC--
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG---DGRK-- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~---D~~~-- 224 (303)
.+++|.+||-.|+|. |..+..+|+..| . +|++++.+++..+.+++ .+.. .+ ..... +..+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G--~~~vi~~~~~~~~~~~~~~----~g~~------~~v~~~~~~~~~~~~~v 267 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAG--ASKVIAFEISEERRNLAKE----MGAD------YVFNPTKMRDCLSGEKV 267 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----cCCC------EEEcccccccccHHHHH
Confidence 478899999889887 888888888876 5 79999988886666554 2221 11 11100 1000
Q ss_pred -CCCCCCCccEEEEcCCC-chHHHHHHhcccCCcEEEE
Q 022070 225 -GWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 -~~~~~~~fD~Iv~~~~~-~~v~~~~~~~LkpGG~lii 260 (303)
.......+|+|+....- ....+.+.+.|+++|+++.
T Consensus 268 ~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 268 MEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred HHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEE
Confidence 11122458999876443 3466788899999999986
No 367
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.18 E-value=0.15 Score=48.38 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 199 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~ 199 (303)
+-+.|+|+|+|.|+++.+++-.+| -.|.+||-|+...+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 446899999999999999999887 799999999887777754
No 368
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=93.05 E-value=1.2 Score=41.32 Aligned_cols=93 Identities=23% Similarity=0.321 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE-EEcCCCCCCCCCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDGRKGWPEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~-~~~D~~~~~~~~~~ 231 (303)
++++.+|+-.|+|. |..+..+|+..| .++++++.+++..+.+++ .+. +.+-. ...+.... ....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~------~~vi~~~~~~~~~~--~~~~ 232 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK----LGA------DEFIATKDPEAMKK--AAGS 232 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCC------cEEecCcchhhhhh--ccCC
Confidence 67888988889876 888888888876 689999998887777643 221 11100 00010011 1256
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+|.|+.........+.+.+.|+++|+++.
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVL 261 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEE
Confidence 89999766555446778899999999886
No 369
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=93.03 E-value=1.2 Score=41.19 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.+.++.+||-.|+|. |..+..+|+..|. .++++++.+++..+.+++ .+. ..+.....+... ....
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~l~~~~~ 232 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGA------EPINFEDAEPVERVREATE 232 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCC------eEEecCCcCHHHHHHHHhC
Confidence 367889999888876 7777888888752 278888888776665543 221 001110001000 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+.........+...+.|+++|+++.
T Consensus 233 ~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 233 GRGADVVLEAVGGAAALDLAFDLVRPGGVISS 264 (344)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhcccCCEEEE
Confidence 24689998876656677888999999999875
No 370
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.01 E-value=0.69 Score=41.74 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=57.2
Q ss_pred CEEEEEcCCccHHHHHHHHHh---C-CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhccC
Q 022070 158 MHALDIGSGTGYLTACFALMV---G-PQGRAVGVEHIP--------------------------ELVVSSIQNIEKSAAA 207 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~---g-~~~~V~gvDis~--------------------------~~l~~A~~~~~~~~~~ 207 (303)
..|+|.||-.|..+..++..+ + ++-++++.|-=+ ...+..++++.+.++
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl- 154 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL- 154 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT-
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC-
Confidence 389999999998877665443 2 234688876311 123333444444332
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEEcCCC----chHHHHHHhcccCCcEEEE
Q 022070 208 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAA----PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 208 ~~~~~~~v~~~~~D~~~~~~~--~~~fD~Iv~~~~~----~~v~~~~~~~LkpGG~lii 260 (303)
..+++.++.|...+.++. .+++-++.+++.+ ...++.++..|.|||++++
T Consensus 155 ---~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 155 ---LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp ---SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---CcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE
Confidence 226899999998776653 2566677777765 3456778889999999996
No 371
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.83 E-value=0.088 Score=51.60 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=51.3
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIHV 237 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~Iv~ 237 (303)
.|+|..+|.|++++.|.+. .|....+.+..-.-.-..+-..|+. - ..-|..+..+. ..+||+|.+
T Consensus 368 NVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLI--------G-~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLI--------G-VYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccc--------h-hccchhhccCCCCcchhheeh
Confidence 6999999999999998764 1444433332100000111122221 1 11133332221 268999988
Q ss_pred cCCC---------chHHHHHHhcccCCcEEEE
Q 022070 238 GAAA---------PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 238 ~~~~---------~~v~~~~~~~LkpGG~lii 260 (303)
+..+ +.++-++-|.|+|||.+++
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 8765 3455677899999999997
No 372
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.66 E-value=0.7 Score=42.25 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCcc
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~~fD 233 (303)
.|+.|+-+| ---..+..+|.. +-..+|..+||++..+.+..+-..+.+. +|++...-|.++.+|+. +.||
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCC
Confidence 467899999 333444444433 3337999999999999999998888766 58999999999987754 7899
Q ss_pred EEEEcCC
Q 022070 234 AIHVGAA 240 (303)
Q Consensus 234 ~Iv~~~~ 240 (303)
+++.+.+
T Consensus 224 vfiTDPp 230 (354)
T COG1568 224 VFITDPP 230 (354)
T ss_pred eeecCch
Confidence 9988875
No 373
>PLN02702 L-idonate 5-dehydrogenase
Probab=92.62 E-value=1.7 Score=40.79 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC---
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG--- 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~---~D~~~~--- 225 (303)
.+.++.+||-+|+|. |..+..+|+..|. ..+++++.++...+.+++ .+.. .+.... .+..+.
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~~~ 246 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQ----LGAD------EIVLVSTNIEDVESEVEE 246 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCC------EEEecCcccccHHHHHHH
Confidence 467889999999876 7888888888763 358889988877776654 2221 111110 111000
Q ss_pred C--CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 W--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~--~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. ...+.+|+|+...........+.+.|+++|+++.
T Consensus 247 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 247 IQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCL 283 (364)
T ss_pred HhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 0 1124689999876655677888999999999775
No 374
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.60 E-value=1 Score=40.73 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=61.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CC
Q 022070 153 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EF 229 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~ 229 (303)
.+++|.+||-.|+ | .|..+..+|+..| .+|++++.+++..+.+++ .+. +.+.....+..+... ..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~i~~~~ 206 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGA------DEVVIDDGAIAEQLRAAP 206 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------cEEEecCccHHHHHHHhC
Confidence 3678899999997 3 3888899999887 679999988877666643 222 111100111100000 02
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+|+|+..... ...+...+.|+++|+++.
T Consensus 207 ~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 207 GGFDKVLELVGT-ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred CCceEEEECCCh-HHHHHHHHHhccCCEEEE
Confidence 468999876543 567778899999999875
No 375
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=92.39 E-value=2.4 Score=40.16 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC--CCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D--~~~---~ 225 (303)
.++++++||-+|+|. |..+..+|+..| . +|+.++.+++..+.+++ .+.. .-+.....+ ... .
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~a~~----lGa~-----~~i~~~~~~~~~~~~v~~ 255 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAG--ASRIIAVDINKDKFAKAKE----LGAT-----ECINPQDYKKPIQEVLTE 255 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----cCCc-----eEecccccchhHHHHHHH
Confidence 478899999999877 777788888876 5 79999999888777743 2211 001111000 000 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHH-hcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALI-DQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~-~~LkpGG~lii 260 (303)
... +.+|+|+-............ ..++++|+++.
T Consensus 256 ~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~ 290 (373)
T cd08299 256 MTD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVI 290 (373)
T ss_pred HhC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEE
Confidence 112 35899988766555555544 44567888876
No 376
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=92.36 E-value=1.8 Score=40.03 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------ 224 (303)
.++++.+||-.|+|. |..+..+|+..| .+ +++++.+++..+.+++ .+.. .+...+-.+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~----~g~~--------~~~~~~~~~~~~~i~ 227 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK----LGAD--------YTIDAAEEDLVEKVR 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc--------EEecCCccCHHHHHH
Confidence 478899999999874 778888888876 55 8888888887776643 2211 111111000
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.......+|+|+...........+.+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 0112235899998766566777888999999999863
No 377
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.28 E-value=1.9 Score=39.84 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CC---CCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GR---KGW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D-~~---~~~ 226 (303)
.++++.+||-.|+ |. |..+..+|+..| .++++++.+. ..+.++ +.+. + .+...+ .. ...
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~----~~g~------~--~~~~~~~~~~~~~~~ 238 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVR----ALGA------D--TVILRDAPLLADAKA 238 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHH----hcCC------e--EEEeCCCccHHHHHh
Confidence 4788999999998 54 888888899887 6788887554 444443 2221 1 111111 00 001
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+|+..... ...+.+.+.|+++|+++.
T Consensus 239 ~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 239 LGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred hCCCCCcEEEecCCH-HHHHHHHHHhccCCEEEE
Confidence 122469999876543 456788899999999885
No 378
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=92.17 E-value=2 Score=38.87 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=61.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---C---
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---K--- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~-V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~---~--- 224 (303)
.++++.+||-.|+|. |..+..+|+..| .+ +++++-+++..+.+++ .+.. . +...... +
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~~------~--~~~~~~~~~~~~l~ 191 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGAT------E--VVTDDSEAIVERVR 191 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc------e--EecCCCcCHHHHHH
Confidence 467889999888765 777788888876 56 8888888776664432 2221 1 1111100 0
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.......+|+++.........+...+.|+++|+++.
T Consensus 192 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~ 227 (312)
T cd08269 192 ELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVI 227 (312)
T ss_pred HHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 011224589999876555667788899999999986
No 379
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.96 E-value=2.3 Score=39.41 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=63.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEE-cCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~-~D~~~---~~ 226 (303)
.+.++.+||-.|+|. |..+..+|+..| .+|++++.+++..+.+++ .+.. .+ .... .+... ..
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~i~~~~~~~~~~~~~~~ 229 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE----LGAV------ATVNASEVEDVAAAVRDL 229 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH----hCCC------EEEccccchhHHHHHHHH
Confidence 367888999999876 778888888876 689999999888777743 2221 11 1111 11100 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.. +.+|.|+.............+.|+++|+++.
T Consensus 230 ~~-~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 230 TG-GGAHVSVDALGIPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred hC-CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 11 2699999775545566778899999999885
No 380
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.86 E-value=3 Score=41.47 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=61.1
Q ss_pred CCcChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022070 135 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 211 (303)
Q Consensus 135 ~~i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g---~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~ 211 (303)
+..+..++...+.+.+.....|+..|.|..||+|.+.....+..+ ....++|.|....+...++.++.-.+..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~---- 271 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID---- 271 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC----
Confidence 444445555555555542233677999999999987765444322 1246899999999999999886554331
Q ss_pred CCCEEEEEcCCCCC--CCCCCCccEEEEcCC
Q 022070 212 EGSLSVHVGDGRKG--WPEFAPYDAIHVGAA 240 (303)
Q Consensus 212 ~~~v~~~~~D~~~~--~~~~~~fD~Iv~~~~ 240 (303)
.+......+|.... .....+||.|+++.+
T Consensus 272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpP 302 (501)
T TIGR00497 272 YANFNIINADTLTTKEWENENGFEVVVSNPP 302 (501)
T ss_pred ccccCcccCCcCCCccccccccCCEEeecCC
Confidence 01222333343221 111246888887764
No 381
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=91.77 E-value=0.34 Score=45.96 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=61.7
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--
Q 022070 153 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-- 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 228 (303)
..++|+.||-+|.++ |..+..+|+..+ ...+...-+++..+.+++. |.. .-+++...++.+....
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~l----GAd-----~vvdy~~~~~~e~~kk~~ 222 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKL----GAD-----EVVDYKDENVVELIKKYT 222 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHc----CCc-----EeecCCCHHHHHHHHhhc
Confidence 367899999999887 667788899875 3566666787877776543 321 1122222222221111
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEEEEC
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~ 263 (303)
...||+|+-...-..........++.|+..++.+.
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~ 257 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLV 257 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEec
Confidence 36799998877665555556666667666655443
No 382
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.74 E-value=0.13 Score=51.45 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=35.3
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 191 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~ 191 (303)
.++++..|||+||.+|+....+++.++.++-|+|||+.|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 367889999999999999999999998888999999865
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.73 E-value=0.85 Score=35.33 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCccEEEEcC
Q 022070 165 SGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGA 239 (303)
Q Consensus 165 cG~G~~t~~lA~~~g~~~-~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~~fD~Iv~~~ 239 (303)
||+|..+..+++.+.... +|+.+|.+++.++.+++. .+.++.||..+.. ......|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 566677777777664445 899999999998877642 4678999987631 1225788888776
Q ss_pred CCchHH---HHHHhcccCCcEEEEEECC
Q 022070 240 AAPEIP---QALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 240 ~~~~v~---~~~~~~LkpGG~lii~v~~ 264 (303)
.-...- -...+.+.|...++.-+.+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 543322 2344556778888876654
No 384
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=91.68 E-value=1.8 Score=40.24 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=61.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CCC---C
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D---~~~---~ 225 (303)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++ .+. +. ++..+ ..+ .
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~------~~--v~~~~~~~~~~~~~~ 237 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARK----FGA------DV--VLNPPEVDVVEKIKE 237 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHH----cCC------cE--EecCCCcCHHHHHHH
Confidence 467888988888876 7788888988863 357888888877665543 221 11 11111 000 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
......+|+|+....-......+.+.++++|+++.
T Consensus 238 ~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 238 LTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred HhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 11113589998765545567778999999999886
No 385
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=91.62 E-value=2 Score=39.83 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWPE 228 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~~ 228 (303)
..+|++||-.|+|. |..+..+|+..|. .++++++.+++..+.+++ .+.. .+ .....+..+ ....
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----lg~~------~~~~~~~~~~~~~~~~~~~ 229 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARK----MGAT------RAVNVAKEDLRDVMAELGM 229 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCCc------EEecCccccHHHHHHHhcC
Confidence 35788998888877 7888888888762 267888878777666543 2221 11 000011100 1112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
...+|+|+.........+...+.|+++|.++..
T Consensus 230 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 230 TEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 246899998665566677888999999999874
No 386
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.61 E-value=2.4 Score=39.26 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.++...+.+++ .+.. .-+.....+..+ ....
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~-----~v~~~~~~~~~~~i~~~~~ 234 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT-----DIVAERGEEAVARVRELTG 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc-----eEecCCcccHHHHHHHhcC
Confidence 467888988899887 8888889998762 258889888766555543 2211 000000000000 0112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...+|+|+.........+.+.+.++++|+++.
T Consensus 235 ~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 235 GVGADAVLECVGTQESMEQAIAIARPGGRVGY 266 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhccCCEEEE
Confidence 24589998766555677888999999999886
No 387
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.44 E-value=3 Score=37.31 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CCC---
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK--- 224 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D---~~~--- 224 (303)
.+.++.+||-.|+ |. |..+..+++..| .+|++++.+++..+.+++ .+.. . +...+ ..+
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~--~~~~~~~~~~~~~~ 198 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGAD------H--VINYRDEDFVERVR 198 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCCC------E--EEeCCchhHHHHHH
Confidence 4678899999994 44 888888898887 689999988887776643 2221 1 11111 000
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.......+|+|+..... ...+.+.++|+++|+++..
T Consensus 199 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 199 EITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred HHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEE
Confidence 01122468999876544 4667788999999998853
No 388
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=1 Score=42.61 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=53.7
Q ss_pred CcCCCCcccC-CCCcChHHHHHHH--------HHHHHccCCCC-CEEEEEcCCccHHHHHHHHHh---CC----CcEEEE
Q 022070 124 YVDSPMAIGY-NATISAPHMHATC--------LQLLEENLKPG-MHALDIGSGTGYLTACFALMV---GP----QGRAVG 186 (303)
Q Consensus 124 y~d~~~~~~~-g~~i~~p~~~~~~--------l~~l~~~l~~g-~~VLDIGcG~G~~t~~lA~~~---g~----~~~V~g 186 (303)
|.. ...+|. |..+++|.+...+ ++.+.....|+ -.++|||.|.|.++.-+.+.. .| ..++..
T Consensus 36 Ys~-~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~i 114 (370)
T COG1565 36 YSS-AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYI 114 (370)
T ss_pred ccc-chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEE
Confidence 444 444543 5677777765543 33333222333 479999999999998777654 11 368999
Q ss_pred EeCCHHHHHHHHHHHHHh
Q 022070 187 VEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 187 vDis~~~l~~A~~~~~~~ 204 (303)
||+|++..+.=+++++..
T Consensus 115 iE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 115 IEPSPELRARQKETLKAT 132 (370)
T ss_pred EecCHHHHHHHHHHHhcc
Confidence 999999998888777654
No 389
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=91.27 E-value=2.7 Score=38.80 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC---CC
Q 022070 153 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~-D~~~---~~ 226 (303)
.++++.+||-.|+++ |..+..+|+..| .+|+.++.+++..+.+++ .+. +.+--... +..+ ..
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~v~~~~~~~~~~~~~~~ 229 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGA------DAFVDFKKSDDVEAVKEL 229 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCC------cEEEcCCCccHHHHHHHH
Confidence 478899999999864 788888999887 689999988877666532 221 11100000 1000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.....+|+|+...........+.+.++++|+++..
T Consensus 230 ~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 230 TGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred hcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEe
Confidence 12246899997555556777888999999999964
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.22 E-value=0.53 Score=45.18 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=54.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCCcc
Q 022070 158 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPYD 233 (303)
Q Consensus 158 ~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~~fD 233 (303)
++||-||||. |...+.....-+. .+|+..|.+.+.++.+..... .+++....|+.+... ....+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCC
Confidence 5799999966 5554444222222 699999999998887765532 267888888876321 114569
Q ss_pred EEEEcCCCchHHHHHHhcccCC
Q 022070 234 AIHVGAAAPEIPQALIDQLKPG 255 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpG 255 (303)
+|++..+...-...+..+++.|
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~g 92 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTG 92 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhC
Confidence 9988876644443333444433
No 391
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.05 E-value=0.59 Score=42.03 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=37.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCC-------cEEEEEeCCHHHHHHHHHHHHH
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVVSSIQNIEK 203 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~-------~~V~gvDis~~~l~~A~~~~~~ 203 (303)
-+|+|+|+|+|.++..+.+.+... .+++.||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 589999999999999998876532 4899999999998888887755
No 392
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=91.02 E-value=0.9 Score=41.84 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=62.0
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 230 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 230 (303)
.++++.+||-.|+ |. |..+..+|+..| .+++.++.+++..+.+++. ...-+ . .+ .+ ..+... . +
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~~----~-~~-~~-~~~v~~---~-~ 224 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYVI----V-GS-KF-SEEVKK---I-G 224 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHhc----C-ch-hH-HHHHHh---c-C
Confidence 3678899999999 34 888899999886 6899999998888887553 22100 0 00 00 000111 1 2
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.+|+++..... .....+.+.|+++|+++.
T Consensus 225 ~~d~~ld~~g~-~~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 225 GADIVIETVGT-PTLEESLRSLNMGGKIIQ 253 (334)
T ss_pred CCcEEEEcCCh-HHHHHHHHHHhcCCEEEE
Confidence 57988876544 346778889999999886
No 393
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.85 E-value=2.6 Score=40.10 Aligned_cols=101 Identities=20% Similarity=0.168 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-E-EEcC-------
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-V-HVGD------- 221 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~-~-~~~D------- 221 (303)
.++++.+||-.|+ |. |..+..+|+..| .++++++.+++..+.+++ + +....+.....+ + ...+
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~---G~~~~i~~~~~~~~~~~~~~~~~~~~ 263 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-L---GAEGVINRRDFDHWGVLPDVNSEAYT 263 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-c---CCCEEEcccccccccccccccchhhh
Confidence 4678899999997 55 888888999887 678888999888887765 2 210000000000 0 0000
Q ss_pred --------CCC---CCCCCC-CccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 222 --------GRK---GWPEFA-PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 222 --------~~~---~~~~~~-~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
..+ .+.... .+|+|+..... .......+.++++|+++.
T Consensus 264 ~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~ 313 (393)
T cd08246 264 AWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVI 313 (393)
T ss_pred hhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEE
Confidence 000 001112 58988876543 456778899999999986
No 394
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.84 E-value=0.52 Score=43.80 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=62.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 158 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 158 ~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
.+|.-||-|. |..++-+|-.+| +.|+-+|+|...+......+. .++.................|+|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 4677899998 899988888776 899999999888777655432 256665555433222224678886
Q ss_pred EcCCC-----ch-HHHHHHhcccCCcEEE
Q 022070 237 VGAAA-----PE-IPQALIDQLKPGGRMV 259 (303)
Q Consensus 237 ~~~~~-----~~-v~~~~~~~LkpGG~li 259 (303)
..... +. +.++..+++|||+.++
T Consensus 237 gaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 54322 22 4578899999999887
No 395
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=90.70 E-value=5.1 Score=35.94 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=60.4
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~ 227 (303)
.+.++..|+..|| | .|..+..+++..| .+|++++.++...+.+++ .+.. .-+.....+..+ ...
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~i~~~~ 204 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARA----LGAD-----HVIDYRDPDLRERVKALT 204 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHH----cCCc-----eeeecCCccHHHHHHHHc
Confidence 4678899999998 3 3778888888876 679999998887776643 2211 001111001100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|.++..... ...+.+.+.++++|+++.
T Consensus 205 ~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 205 GGRGVDVVYDPVGG-DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred CCCCcEEEEECccH-HHHHHHHHhhccCCEEEE
Confidence 22458988875543 455677889999999875
No 396
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.70 E-value=0.41 Score=37.47 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeC
Q 022070 156 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH 189 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDi 189 (303)
+....+|||||+|.+.-.|.+. | -+-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G--y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G--YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C--CCcccccc
Confidence 3457999999999999888877 4 46678885
No 397
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=90.66 E-value=3.2 Score=38.32 Aligned_cols=98 Identities=26% Similarity=0.294 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC------CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------KG 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~------~~ 225 (303)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++. +.. .-+.....+.. ..
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAM----GAD-----IVVDPAADSPFAAWAAELA 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCc-----EEEcCCCcCHHHHHHHHHH
Confidence 468899999998866 7777888888763 2478888888877776542 210 00000000000 00
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+.+|+|+....-......+.+.++++|+++.
T Consensus 228 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 262 (341)
T cd08262 228 RAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVV 262 (341)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 11224689998655443466778889999999885
No 398
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.63 E-value=0.43 Score=45.36 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=57.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 225 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 225 (303)
..+|.+|+|++|-.|..|.++|....+.++++|.|.++...+..++.+...|+. +++...+|+...
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~------~~~~~~~df~~t 276 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS------IVESVEGDFLNT 276 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC------ccccccccccCC
Confidence 678899999999999999999999877899999999999999999988887764 677778887664
No 399
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.61 E-value=4.8 Score=36.27 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCC--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 155 KPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG--~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.++.+|+-.|+. .|..+..+|+..| .++++++.+++..+.+++ + +. ..+ +. +..+ ... +.+
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~~-~~--~~~~-~~~-~~~ 193 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---GA------AEV-VV--GGSE-LSG-APV 193 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------cEE-Ee--cccc-ccC-CCc
Confidence 358899999983 3788888888876 689999888887777754 2 21 111 11 1111 112 468
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
|+++..... .......+.|+++|+++..
T Consensus 194 d~vl~~~g~-~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 194 DLVVDSVGG-PQLARALELLAPGGTVVSV 221 (305)
T ss_pred eEEEECCCc-HHHHHHHHHhcCCCEEEEE
Confidence 999876544 4567789999999999863
No 400
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=90.39 E-value=1.8 Score=39.22 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=66.7
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---C
Q 022070 153 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---P 227 (303)
Q Consensus 153 ~l~~g~~VLDIGc--G~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~ 227 (303)
++++|+.||--.+ |-|.+...+++..+ .++++.--+.+..+.|+++-.+ +.|.....|+.+.. .
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~---------h~I~y~~eD~v~~V~kiT 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE---------HPIDYSTEDYVDEVKKIT 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc---------ceeeccchhHHHHHHhcc
Confidence 5899998875433 44778888888876 7888888888888888775322 35666666654321 1
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEEEECCC
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
.....|.++-..... -++.-..+||++|.++- +++.
T Consensus 212 ngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVS-fG~a 247 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKD-TFAKSLAALKPMGKMVS-FGNA 247 (336)
T ss_pred CCCCceeeeccccch-hhHHHHHHhccCceEEE-eccc
Confidence 113577777655543 34566788999999874 5553
No 401
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.26 E-value=2.6 Score=37.45 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 156 PGMHALDIGSGTGYLT-ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t-~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.+.+||-||.|.=... +......|....|++-+++++..+.++. .+++++..++.... ...+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~-------------~~i~~~~r~~~~~d--l~g~~L 88 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY-------------GNLKLIKGNYDKEF--IKDKHL 88 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHH--hCCCcE
Confidence 5679999999984433 2222234544556666888887665431 47888887765432 256788
Q ss_pred EEEcCCCchHHHHHHhcccCCcEEEEEECC
Q 022070 235 IHVGAAAPEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 235 Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|++...-+.+-+.+.+..+.-|.++..+..
T Consensus 89 ViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 89 IVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 888877777777777666665666654443
No 402
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=90.22 E-value=1.2 Score=40.72 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~ 227 (303)
.+.++.+||-.|+ |. |..+..+|+..| .++++++.++...+.+++.+ +.. .-+.....+..+ ...
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~---g~~-----~~~~~~~~~~~~~v~~~~ 211 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEEL---GFD-----AAINYKTPDLAEALKEAA 211 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhc---CCc-----eEEecCChhHHHHHHHhc
Confidence 3677889999984 44 888888898876 68999998888777765432 110 001111001100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. +.+|+++.... ....+...+.|+++|+++.
T Consensus 212 ~-~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 212 P-DGIDVYFDNVG-GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred c-CCceEEEEcch-HHHHHHHHHhcCCCceEEE
Confidence 2 46898886544 3567788899999999875
No 403
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.99 E-value=2.6 Score=36.85 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDi--s~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.|.+||-||.|. |.--+......| ++|+.++. +++..+.++ . .++.++.+++.... ...+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~-----~--------~~i~~~~~~~~~~d--l~~~ 70 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAE-----Q--------GGITWLARCFDADI--LEGA 70 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHH-----c--------CCEEEEeCCCCHHH--hCCc
Confidence 367999999997 443333333334 56776654 444333322 1 37888888876432 2578
Q ss_pred cEEEEcCCCchHHHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
|+|+....-+++-..+....+.-|.++-.++.
T Consensus 71 ~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 71 FLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 99998877776766666666666777644443
No 404
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=89.94 E-value=2.9 Score=38.49 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=56.6
Q ss_pred CCCEEEEE--cCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCCC
Q 022070 156 PGMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWPE 228 (303)
Q Consensus 156 ~g~~VLDI--GcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~~ 228 (303)
++..++-+ |+|. |..+..+|+..| .+|++++.+++..+.+++ .+.. .+ .....+..+ ....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~i~~~~~~~~~~v~~~~~ 209 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAE------YVLNSSDPDFLEDLKELIA 209 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCc------EEEECCCccHHHHHHHHhC
Confidence 34455543 6666 888888999887 689999999988877765 2221 11 100011100 0111
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
...+|+|+....... .....+.|+++|+++..
T Consensus 210 ~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 210 KLNATIFFDAVGGGL-TGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEE
Confidence 135899987655433 45568889999999863
No 405
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=89.91 E-value=1.5 Score=39.20 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 154 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
+.++.+||-.|+ |. |..+..+++..| .+|+.++.++ ..+.+++ .+.. .-+.....+..+ ......
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~----~g~~-----~~~~~~~~~~~~-~~~~~~ 208 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS----LGAD-----EVIDYTKGDFER-AAAPGG 208 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH----cCCC-----EEEeCCCCchhh-ccCCCC
Confidence 678899999996 44 777788888876 6788887665 5454422 2211 001111111111 112246
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
+|+++....-. ....+.++|+++|+++..
T Consensus 209 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 209 VDAVLDTVGGE-TLARSLALVKPGGRLVSI 237 (309)
T ss_pred ceEEEECCchH-HHHHHHHHHhcCcEEEEE
Confidence 89988765443 567788899999998863
No 406
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=89.90 E-value=3.6 Score=38.90 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 228 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~ 228 (303)
.+++|++||-.|+|. |..+..+|+..|. .+++++|.++...+.+++ .+. ..+.....+..+ ....
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~----~g~------~~v~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAES----IGA------IPIDFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCC------eEeccCcccHHHHHHHhhC
Confidence 467899999899986 8888888888762 278889998887776654 211 011000001000 0112
Q ss_pred CCCccEEEEcCCCch-----------HHHHHHhcccCCcEEEE
Q 022070 229 FAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 260 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~-----------v~~~~~~~LkpGG~lii 260 (303)
+.+|+|+.....+. .+..+.+.|+++|+++.
T Consensus 242 -~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 45899987654331 35677889999999864
No 407
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=89.67 E-value=5.8 Score=36.06 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=59.7
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 224 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------ 224 (303)
.+++|.+||-.|+ |. |..+..+|+..| .+++.+.-+.+..+.+++ .+.. . +...+-.+
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~------~--~~~~~~~~~~~~i~ 201 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA----LGIG------P--VVSTEQPGWQDKVR 201 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh----cCCC------E--EEcCCCchHHHHHH
Confidence 4788999999886 43 888899999987 677777666666555543 2221 1 11111000
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.......+|+|+....- .....+.+.|+++|+++..
T Consensus 202 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 202 EAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred HHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEEE
Confidence 01111368999876554 4567788999999999863
No 408
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.35 E-value=0.21 Score=48.08 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 226 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 226 (303)
.++|..|-|+.||-|-+++.+++.. ++|++-|.+++++++.+.+++.+.+. ..++++...|+.+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHHh
Confidence 6899999999999999999999984 89999999999999999999877654 234788888876544
No 409
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=89.04 E-value=2.5 Score=38.67 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CCCCCCCC
Q 022070 155 KPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRKGWPEF 229 (303)
Q Consensus 155 ~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D---~~~~~~~~ 229 (303)
.++.+||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++ .+.. .+--...+ ..... ..
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~v~~~~~~~~~~~~~~-~~ 211 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK----LGAK------EVIPREELQEESIKPL-EK 211 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH----cCCC------EEEcchhHHHHHHHhh-cc
Confidence 34679999998 55 888888999887 689999988887776643 2221 11000000 00011 12
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
..+|+|+..... ...+...+.|+++|+++..
T Consensus 212 ~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 212 QRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred CCcCEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 458998865544 5667788999999999863
No 410
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=88.83 E-value=9.2 Score=34.79 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CCC---CC
Q 022070 153 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D-~~~---~~ 226 (303)
.++++.+||-.|+ | .|..+..+|+..| .+++.++.+++..+.+++ .+.. .-+.....+ ... ..
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK----LAAI-----ILIRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCc-----EEEecCChhHHHHHHHHH
Confidence 4678899999984 3 3888888998876 667778888887777743 2221 001111111 000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+++.... ....+...+.|+++|+++.
T Consensus 206 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 206 TGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhccCCeEEE
Confidence 11246899987653 4566778899999999885
No 411
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.77 E-value=10 Score=34.52 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEE-cCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~-~D~~~---~~ 226 (303)
.+++|.+|+-.|+|. |..+..+|+..| .+|+.++.+++..+.+++. +.. .+ .... .+... ..
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g~~------~~~~~~~~~~~~~~~~~~ 224 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAAG--ARVIATSSSDEKLERAKAL----GAD------HVINYRTTPDWGEEVLKL 224 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----CCC------EEEcCCcccCHHHHHHHH
Confidence 467888888778765 777777888876 6899999888877776542 221 11 1000 01000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+++.... ......+.+.|+++|+++.
T Consensus 225 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 225 TGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred cCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEE
Confidence 12246899987654 4556778899999999885
No 412
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.77 E-value=1.7 Score=34.46 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022070 155 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 232 (303)
Q Consensus 155 ~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~f 232 (303)
..| +|+|+|.|. =..+..++++ | ..|+++|+++. .|. ..+.+...|..+.--. -...
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~-g--~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A 71 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER-G--FDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGA 71 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc-C--CcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCc
Confidence 444 999999987 4566777776 3 68999999876 111 2567888888763211 1467
Q ss_pred cEEEEcCCCchHHHHHHhccc
Q 022070 233 DAIHVGAAAPEIPQALIDQLK 253 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~Lk 253 (303)
|+|++.-+-+++...+.+.-+
T Consensus 72 ~lIYSiRpppEl~~~ildva~ 92 (129)
T COG1255 72 DLIYSIRPPPELQSAILDVAK 92 (129)
T ss_pred cceeecCCCHHHHHHHHHHHH
Confidence 999999998888876665543
No 413
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=88.72 E-value=3.7 Score=37.58 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=57.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CC
Q 022070 153 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDi--s~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~ 226 (303)
.++++.+||-.|+|. |..+..+|+..| .+|+.+.. +.+..+.+++ .++. .+.....+..+ ..
T Consensus 161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~l~~~ 228 (306)
T cd08258 161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGAD------AVNGGEEDLAELVNEI 228 (306)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCCc------ccCCCcCCHHHHHHHH
Confidence 367888888877665 777788888876 56766633 3334444332 2221 11001111100 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|.++.............+.|+++|+++.
T Consensus 229 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~ 262 (306)
T cd08258 229 TDGDGADVVIECSGAVPALEQALELLRKGGRIVQ 262 (306)
T ss_pred cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 1224689998876555667788899999999985
No 414
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.68 E-value=6.4 Score=34.11 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=57.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--------
Q 022070 157 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-------- 227 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~-g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------- 227 (303)
+++||-.|++ |.++..+++.+ ....+|++++.+++..+.+.+.+... .++.++.+|..+...
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHHHHH
Confidence 5689999986 44444444443 12268999999887766554444332 267788888875210
Q ss_pred --CCCCccEEEEcCCCc-----------------------hHHHHHHhcccCCcEEEEEE
Q 022070 228 --EFAPYDAIHVGAAAP-----------------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 228 --~~~~fD~Iv~~~~~~-----------------------~v~~~~~~~LkpGG~lii~v 262 (303)
..+..|.|+.+.... .+.+.+...++++|.+++..
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 013568887665421 11244556677788877643
No 415
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.25 E-value=1.8 Score=41.36 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-------HHHHhccCCccCCC
Q 022070 141 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ-------NIEKSAAAPLLKEG 213 (303)
Q Consensus 141 ~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~-------~~~~~~~~~~~~~~ 213 (303)
.....+.+.++ +.+++...|+|+|-|....++|...+ ...-+|+|+.....+.|.. .++..|-. ..
T Consensus 179 ~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~----~~ 251 (419)
T KOG3924|consen 179 EQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK----PN 251 (419)
T ss_pred HHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCC----cC
Confidence 33455566665 88999999999999999988887754 3577888887654444432 22233321 24
Q ss_pred CEEEEEcCCCCCCC---CCCCccEEEEcCCC--chH---HHHHHhcccCCcEEEE
Q 022070 214 SLSVHVGDGRKGWP---EFAPYDAIHVGAAA--PEI---PQALIDQLKPGGRMVI 260 (303)
Q Consensus 214 ~v~~~~~D~~~~~~---~~~~fD~Iv~~~~~--~~v---~~~~~~~LkpGG~lii 260 (303)
.+..+.++..+.-. -....++|+++... +++ .+++...+++|-+++-
T Consensus 252 ~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 252 KIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIIS 306 (419)
T ss_pred ceeecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEec
Confidence 56777777654210 11456888887654 222 2477788899999885
No 416
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=88.07 E-value=5.5 Score=36.43 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 224 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------ 224 (303)
.++++++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++ .+. +.+ ...+-.+
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~v--~~~~~~~~~~~~~ 201 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKS----LGC------DRP--INYKTEDLGEVLK 201 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHH----cCC------ceE--EeCCCccHHHHHH
Confidence 4788999999984 44 888888888876 679998888877666643 221 111 1111000
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.... ..+|+|+.... ......+.+.|+++|+++.
T Consensus 202 ~~~~-~~vd~v~~~~g-~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 202 KEYP-KGVDVVYESVG-GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred HhcC-CCCeEEEECCc-HHHHHHHHHHhccCCeEEE
Confidence 0112 45898887654 3567788899999999885
No 417
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=88.02 E-value=1.9 Score=39.91 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCEEEEEc-CCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 156 PGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIG-cG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
+|.+|+-.| +|. |..+..+|+..| .+|+++..+ ...+.+ ...+.. .-+.....+..+.....+.+|
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~----~~~g~~-----~~~~~~~~~~~~~l~~~~~vd 229 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLV----KSLGAD-----DVIDYNNEDFEEELTERGKFD 229 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHH----HHhCCc-----eEEECCChhHHHHHHhcCCCC
Confidence 489999998 454 888888888887 577776643 333322 222221 001110001001011124689
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
+++...... ..+.+.+.|+++|+++..
T Consensus 230 ~vi~~~g~~-~~~~~~~~l~~~G~~v~~ 256 (350)
T cd08248 230 VILDTVGGD-TEKWALKLLKKGGTYVTL 256 (350)
T ss_pred EEEECCChH-HHHHHHHHhccCCEEEEe
Confidence 999765544 677888999999999863
No 418
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.97 E-value=6.8 Score=35.75 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=58.0
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-CCCCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEF 229 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~ 229 (303)
.+.++.+|+-.|+ |. |..+..+|+..| .+|++++. +...+.+++ .+.. .+.....+... ....
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~- 201 (331)
T cd08273 136 KVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE----LGAT------PIDYRTKDWLPAMLTP- 201 (331)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH----cCCe------EEcCCCcchhhhhccC-
Confidence 3678999999996 44 778888888876 67888875 666555533 2210 01000001100 0112
Q ss_pred CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 ~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
+.+|+|+....-.. .+...++++++|+++.
T Consensus 202 ~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~ 231 (331)
T cd08273 202 GGVDVVFDGVGGES-YEESYAALAPGGTLVC 231 (331)
T ss_pred CCceEEEECCchHH-HHHHHHHhcCCCEEEE
Confidence 46899987655444 6778899999999875
No 419
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=87.37 E-value=4.6 Score=37.10 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCEEEEEcCC--ccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022070 157 GMHALDIGSG--TGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 231 (303)
Q Consensus 157 g~~VLDIGcG--~G~~t~~lA~~~-g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~~ 231 (303)
+.+||-.|+. .|..+..+|+.. | .+|+++..+++..+.+++ .+. +.+--...+....+ ...+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G--~~vi~~~~~~~~~~~l~~----~g~------~~~~~~~~~~~~~i~~~~~~~ 216 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTG--LTVIATASRPESQEWVLE----LGA------HHVIDHSKPLKAQLEKLGLEA 216 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCC--CEEEEEcCcHHHHHHHHH----cCC------CEEEECCCCHHHHHHHhcCCC
Confidence 8899999853 377888888876 5 789999888877666643 222 11110000110000 11246
Q ss_pred ccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
+|+|+.............++|+++|+++..
T Consensus 217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 217 VSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 899986543445677888999999999864
No 420
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.34 E-value=0.34 Score=38.03 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=24.1
Q ss_pred CccEEEEcCCCc------------hHHHHHHhcccCCcEEEEEE
Q 022070 231 PYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPV 262 (303)
Q Consensus 231 ~fD~Iv~~~~~~------------~v~~~~~~~LkpGG~lii~v 262 (303)
.||+|+|-++.. .+++.+.++|+|||.+|+.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999887653 34678899999999999843
No 421
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.16 E-value=2 Score=35.07 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=26.7
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH
Q 022070 162 DIGSGTG--YLTACFA-LMVGPQGRAVGVEHIPELVVSSIQN 200 (303)
Q Consensus 162 DIGcG~G--~~t~~lA-~~~g~~~~V~gvDis~~~l~~A~~~ 200 (303)
|||+..| ..+..+. +..++.++|+++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 3456678999999999999999888
No 422
>PRK11524 putative methyltransferase; Provisional
Probab=87.16 E-value=0.86 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCCC--CCCCCccEEEEcCCCc----------------------hHHHHHHhcccCCcEEEEEEC
Q 022070 213 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP----------------------EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 213 ~~v~~~~~D~~~~~--~~~~~fD~Iv~~~~~~----------------------~v~~~~~~~LkpGG~lii~v~ 263 (303)
.+..++++|..+.. ...++||+|+++.++. ..+..+.++|||||.+++-+.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45578888887632 1237899999987641 245778899999999998544
No 423
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=87.10 E-value=3.1 Score=39.72 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC------EEEE-EcCC-
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS------LSVH-VGDG- 222 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~------v~~~-~~D~- 222 (303)
.+.++.+||-.|+ |. |..+..+|+..| .++++++.+++..+.+++ .+....+..+. +... ..+.
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G--~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~~~~~~~~ 259 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAGG--GNPVAVVSSPEKAEYCRE----LGAEAVIDRNDFGHWGRLPDLNTQAPK 259 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCCEEecCCCcchhhccccccccccc
Confidence 3678899999998 44 888888898877 678888888877766654 22110000000 0000 0000
Q ss_pred ---C---------CCCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 223 ---R---------KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 223 ---~---------~~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
. ........+|+|+..... .......+.|+++|+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~ 309 (398)
T TIGR01751 260 EWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVIC 309 (398)
T ss_pred hhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence 0 000111458988876553 4566788999999998874
No 424
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=86.78 E-value=7.6 Score=35.24 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~ 226 (303)
.++++.+||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++ .+.. .+ .....+..+ ..
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~~ 206 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGAD------VAVDYTRPDWPDQVREA 206 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCC------EEEecCCccHHHHHHHH
Confidence 4678899999984 43 888888999887 689999988887776643 2211 11 000001000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.....+|.|+....-. ..+...+.|+++|+++..
T Consensus 207 ~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 207 LGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTY 240 (324)
T ss_pred cCCCCceEEEECCChH-hHHHHHHHhccCcEEEEE
Confidence 1223589999765544 347788999999998864
No 425
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.57 E-value=14 Score=33.18 Aligned_cols=95 Identities=25% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 154 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 154 l~~g~~VLDIGc-G-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
++++.+|+..|+ | .|..+..+|+..| .+|++++.+ +..+.++ +.+... -+.....+..........
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~----~~g~~~-----~~~~~~~~~~~~~~~~~~ 208 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVR----SLGADE-----VIDYTTEDFVALTAGGEK 208 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHH----HcCCCE-----eecCCCCCcchhccCCCC
Confidence 678999999997 4 3888888998877 688888744 4444442 222210 000000010011112246
Q ss_pred ccEEEEcCCC--chHHHHHHhcccCCcEEEEE
Q 022070 232 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 232 fD~Iv~~~~~--~~v~~~~~~~LkpGG~lii~ 261 (303)
+|+|+..... ......+. .|+++|+++..
T Consensus 209 ~d~vi~~~~~~~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 209 YDVIFDAVGNSPFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred CcEEEECCCchHHHHHHhhh-ccCCCCEEEEe
Confidence 8999876442 12222222 39999999863
No 426
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.38 E-value=2.5 Score=38.95 Aligned_cols=90 Identities=13% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.|++|+-+|.|. |...+..+...| .+|+.++.++...+.+. ..+. ..+. ..+..+ ....+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~----~~g~------~~~~--~~~l~~---~l~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARIT----EMGL------IPFP--LNKLEE---KVAEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HCCC------eeec--HHHHHH---HhccCCE
Confidence 468999999987 655555555555 68999999887544432 2111 1111 111111 1246899
Q ss_pred EEEcCCCchHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAAPEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+...+..-+.+...+.++++. +++-+.
T Consensus 213 Vint~P~~ii~~~~l~~~k~~a-liIDla 240 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKHA-VIIDLA 240 (287)
T ss_pred EEECCChHHhCHHHHhcCCCCe-EEEEeC
Confidence 9988765433456677888864 444443
No 427
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.02 E-value=8.2 Score=36.09 Aligned_cols=118 Identities=17% Similarity=0.071 Sum_probs=64.5
Q ss_pred cccCCCCcChHHHHH---HHHHHHHccCCCCCEEEEEcCCc-cHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 130 AIGYNATISAPHMHA---TCLQLLEENLKPGMHALDIGSGT-GYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 130 ~~~~g~~i~~p~~~~---~~l~~l~~~l~~g~~VLDIGcG~-G~~t~-~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
.+=.+..++.-++.+ .....+. .+...+|.-||||. |...+ .++.. .+-.+|..++.+++..+...+.+...
T Consensus 99 a~~d~~~lT~~RTaa~sala~~~la--~~~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~~r~~~~a~~~~~~~~~~ 175 (325)
T PRK08618 99 AILDGTYLTQIRTGALSGVATKYLA--REDAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVYSRTFEKAYAFAQEIQSK 175 (325)
T ss_pred EEEccchhhhhhHHHHHHHHHHHhc--CCCCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEECCCHHHHHHHHHHHHHh
Confidence 333445554444333 3334443 24456899999997 55433 23333 23368899999988877666655432
Q ss_pred ccCCccCCCCEEEE-EcCCCCCCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEEECC
Q 022070 205 AAAPLLKEGSLSVH-VGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 205 ~~~~~~~~~~v~~~-~~D~~~~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
..+++. ..|..+.. ...|+|++.....+-.-. ++||||- .+..++.
T Consensus 176 --------~~~~~~~~~~~~~~~---~~aDiVi~aT~s~~p~i~--~~l~~G~-hV~~iGs 222 (325)
T PRK08618 176 --------FNTEIYVVNSADEAI---EEADIIVTVTNAKTPVFS--EKLKKGV-HINAVGS 222 (325)
T ss_pred --------cCCcEEEeCCHHHHH---hcCCEEEEccCCCCcchH--HhcCCCc-EEEecCC
Confidence 122222 22322211 457999877655443222 7788864 4555654
No 428
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=85.96 E-value=2.1 Score=39.17 Aligned_cols=92 Identities=20% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCCCC-EEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCC
Q 022070 154 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWP 227 (303)
Q Consensus 154 l~~g~-~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~---~~~~ 227 (303)
+.++. +||-.|+ |. |..+..+|+..| .+++.++-+++..+.+++ .+.. .+ +...+.. ....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~-~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGAS------EV-IDREDLSPPGKPLE 208 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCc------EE-EccccHHHHHHHhc
Confidence 57788 9999998 55 888888999887 678877777766555532 2221 11 0001100 0011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. +.+|.|+.....+ ....+.++|+++|+++.
T Consensus 209 ~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~ 239 (323)
T TIGR02823 209 K-ERWAGAVDTVGGH-TLANVLAQLKYGGAVAA 239 (323)
T ss_pred C-CCceEEEECccHH-HHHHHHHHhCCCCEEEE
Confidence 1 3489887765543 56778899999999986
No 429
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.84 E-value=2.4 Score=36.79 Aligned_cols=111 Identities=21% Similarity=0.212 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022070 137 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 213 (303)
Q Consensus 137 i~~p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~---g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~ 213 (303)
+-.|+....+.+.+- .++| ..|+|+|.-.|+.+.+.|... |...+|+++|++-..++.+... .+
T Consensus 52 ~k~p~D~~~yQellw-~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p 118 (237)
T COG3510 52 IKSPSDMWNYQELLW-ELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VP 118 (237)
T ss_pred cCCHHHHHHHHHHHH-hcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CC
Confidence 344565555656554 3555 589999999998887776643 4457999999986655443321 15
Q ss_pred CEEEEEcCCCCCCC------CCCCccEEEEcCC----CchHH---HHHHhcccCCcEEEE
Q 022070 214 SLSVHVGDGRKGWP------EFAPYDAIHVGAA----APEIP---QALIDQLKPGGRMVI 260 (303)
Q Consensus 214 ~v~~~~~D~~~~~~------~~~~fD~Iv~~~~----~~~v~---~~~~~~LkpGG~lii 260 (303)
.|.++.++..+..- ....|-.|+.... .++++ +....+|.-|-.+++
T Consensus 119 ~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 119 DILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred CeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEE
Confidence 89999999876320 0123445654433 24444 334466777877776
No 430
>PRK06940 short chain dehydrogenase; Provisional
Probab=85.82 E-value=9.7 Score=34.28 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=49.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------CC
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---------PE 228 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---------~~ 228 (303)
+.+|-.|+ |+++..+++.+....+|+.++.+++.++...+.+...+ .++.++..|..+.. ..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~i~~~~~~~~~ 73 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-------FDVSTQEVDVSSRESVKALAATAQT 73 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEeecCCHHHHHHHHHHHHh
Confidence 35676675 46788888777555789999998876665555554322 25777788876521 11
Q ss_pred CCCccEEEEcCCC
Q 022070 229 FAPYDAIHVGAAA 241 (303)
Q Consensus 229 ~~~fD~Iv~~~~~ 241 (303)
.+..|.++.+...
T Consensus 74 ~g~id~li~nAG~ 86 (275)
T PRK06940 74 LGPVTGLVHTAGV 86 (275)
T ss_pred cCCCCEEEECCCc
Confidence 2578999887754
No 431
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=85.68 E-value=1.4 Score=33.97 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=53.9
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEc
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG 238 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~ 238 (303)
+|| +.||.|..|..+++.. ++.+++.++ ++++......+.......+|+|+..
T Consensus 2 ~Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi-------~~~i~a~~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANAL-------------------NKGAKERGV-------PLEAAAGAYGSHYDMIPDYDLVILA 54 (99)
T ss_pred EEE-EECCCCCCHHHHHHHH-------------------HHHHHHCCC-------cEEEEEeeHHHHHHhccCCCEEEEc
Confidence 345 5678998888877775 244445443 4666666555432233678999999
Q ss_pred CCCchHHHHHHhcccCCcEEEEEEC
Q 022070 239 AAAPEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 239 ~~~~~v~~~~~~~LkpGG~lii~v~ 263 (303)
.-.....+.+.+.+.+-|.-+..++
T Consensus 55 PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 55 PQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred ChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 9888888999998888887666554
No 432
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=85.67 E-value=1.8 Score=39.97 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=55.3
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHhccCCccCCCCEEEEEcCC----
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIP----ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG---- 222 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~----~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~---- 222 (303)
.++++.+||-.|+ |. |..+..+|+..| .+++++..+. +..+.++ +.+.. . ++..+.
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g~~------~--~~~~~~~~~~ 208 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALGAD------H--VLTEEELRSL 208 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcCCC------E--EEeCcccccc
Confidence 3678999999886 44 888888999886 5666655444 3333332 23221 1 111110
Q ss_pred --CC---CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 223 --RK---GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 223 --~~---~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.+ .... +.+|+|+....-. ......++|+++|+++..
T Consensus 209 ~~~~~i~~~~~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 209 LATELLKSAPG-GRPKLALNCVGGK-SATELARLLSPGGTMVTY 250 (341)
T ss_pred cHHHHHHHHcC-CCceEEEECcCcH-hHHHHHHHhCCCCEEEEE
Confidence 00 0111 2689998765544 345677999999998863
No 433
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.63 E-value=1.3 Score=37.65 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.|++|.-||+|. |...+..++.+| .+|++.|.+......+ ... .+. ..+..+. ....|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~----~~~---------~~~--~~~l~el---l~~aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGA----DEF---------GVE--YVSLDEL---LAQADI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHH----HHT---------TEE--ESSHHHH---HHH-SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhc----ccc---------cce--eeehhhh---cchhhh
Confidence 478999999998 888888888877 7999999998755411 111 221 1122221 135688
Q ss_pred EEEcCCC----chHH-HHHHhcccCCcEEEEEECC
Q 022070 235 IHVGAAA----PEIP-QALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 235 Iv~~~~~----~~v~-~~~~~~LkpGG~lii~v~~ 264 (303)
|+...+. .+++ ++..+.+|+|.+|| .++.
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aR 128 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVAR 128 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSS
T ss_pred hhhhhccccccceeeeeeeeeccccceEEE-eccc
Confidence 8877664 2332 67778888887555 3444
No 434
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.62 E-value=2.1 Score=38.83 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCHHHH
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELV 194 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g----~~~~V~gvDis~~~l 194 (303)
+.+...++|.|||.|.++.++++.+. +...++.||......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 57778999999999999999999874 236889999865444
No 435
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=85.62 E-value=0.9 Score=41.70 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=48.1
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-C-CccEEE
Q 022070 159 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-A-PYDAIH 236 (303)
Q Consensus 159 ~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~-~fD~Iv 236 (303)
+|+|+-||.|+++.-+-+.. - ..+.++|+++...+.-+.|+ + ....+|..+..... . .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~------------~-~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANF------------P-EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHH------------T-EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhcc------------c-ccccccccccccccccccceEEE
Confidence 79999999999999888873 2 46889999999888877775 3 67778877643111 2 489998
Q ss_pred EcCCC
Q 022070 237 VGAAA 241 (303)
Q Consensus 237 ~~~~~ 241 (303)
.+.+|
T Consensus 67 ggpPC 71 (335)
T PF00145_consen 67 GGPPC 71 (335)
T ss_dssp EE---
T ss_pred eccCC
Confidence 88766
No 436
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=85.45 E-value=4.7 Score=35.39 Aligned_cols=98 Identities=16% Similarity=0.009 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~ 227 (303)
.+++|.+|+-.|+ |. |..+..+|+..| .++++++.+++..+.+++... . .. .-+.....+..+ ...
T Consensus 105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~-~-~~-----~~~~~~~~~~~~~~~~~~ 175 (293)
T cd05195 105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG-P-VD-----HIFSSRDLSFADGILRAT 175 (293)
T ss_pred ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC-C-cc-----eEeecCchhHHHHHHHHh
Confidence 4788999998874 43 778888888876 689999888877766654310 0 00 001100000000 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+++....-. ..+...+.++++|+++.
T Consensus 176 ~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~ 207 (293)
T cd05195 176 GGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVE 207 (293)
T ss_pred CCCCceEEEeCCCch-HHHHHHHhcccCceEEE
Confidence 123589888655443 67788899999999885
No 437
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.32 E-value=5.2 Score=37.49 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--C-Ccc
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYD 233 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~-~fD 233 (303)
..+++|+-||.|++..-+... |- .-+.++|+++..++.-+.|... ..+...|..+..... . .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf-~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GF-EIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CC-eEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCC
Confidence 358999999999999777776 32 4678999999998887776431 345556655432221 2 789
Q ss_pred EEEEcCCCch
Q 022070 234 AIHVGAAAPE 243 (303)
Q Consensus 234 ~Iv~~~~~~~ 243 (303)
+|+.+.+|+.
T Consensus 70 vligGpPCQ~ 79 (328)
T COG0270 70 VLIGGPPCQD 79 (328)
T ss_pred EEEeCCCCcc
Confidence 9998887744
No 438
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=85.20 E-value=4.6 Score=35.50 Aligned_cols=98 Identities=21% Similarity=0.161 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022070 153 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 227 (303)
Q Consensus 153 ~l~~g~~VLDIG-cG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~---~~~ 227 (303)
.++++++|+-.| +|. |..+..+|+..| .+|++++.+++..+.+++ .+.. ...-+.....+..+ ...
T Consensus 101 ~~~~g~~vlv~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 101 RLRPGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLRE----LGIP---DDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC---hhheeeCCCccHHHHHHHHh
Confidence 367889999888 444 778888888876 689999989888877742 2220 00001110001100 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+++.... ....+...+.|+++|.++.
T Consensus 172 ~~~~~d~vi~~~~-~~~~~~~~~~l~~~g~~v~ 203 (288)
T smart00829 172 GGRGVDVVLNSLA-GEFLDASLRCLAPGGRFVE 203 (288)
T ss_pred CCCCcEEEEeCCC-HHHHHHHHHhccCCcEEEE
Confidence 1235898886544 3556778899999999885
No 439
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.08 E-value=5 Score=37.00 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=50.7
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 158 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 158 ~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
++|.-||+|. |. ++..+.+. |...+|+++|.+++..+.+++ .+. ......+..+ .....|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~--------~~~~~~~~~~---~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGL--------GDRVTTSAAE---AVKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCC--------CceecCCHHH---HhcCCCEE
Confidence 5789999887 44 33333332 322489999999987766543 221 0111112111 11457999
Q ss_pred EEcCCCc---hHHHHHHhcccCCcEEEEEECC
Q 022070 236 HVGAAAP---EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 236 v~~~~~~---~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+...... .+.+.+...+++|..++ .++.
T Consensus 71 iiavp~~~~~~v~~~l~~~l~~~~iv~-dvgs 101 (307)
T PRK07502 71 ILCVPVGASGAVAAEIAPHLKPGAIVT-DVGS 101 (307)
T ss_pred EECCCHHHHHHHHHHHHhhCCCCCEEE-eCcc
Confidence 8887653 34455666778887544 4443
No 440
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=85.04 E-value=15 Score=33.45 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022070 153 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 224 (303)
Q Consensus 153 ~l~~g~~VLDIG-cG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------ 224 (303)
.+++|.+|+-.| +|. |..+..+|+..| .++++++.+++..+.+++ .+.. .++..+..+
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~~~ 202 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKK----AGAW--------QVINYREENIVERVK 202 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCCC--------EEEcCCCCcHHHHHH
Confidence 467889998875 444 888888999887 689999988887776643 2211 111111110
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.......+|+|+..... .......+.++++|+++..
T Consensus 203 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 203 EITGGKKVRVVYDSVGK-DTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred HHcCCCCeEEEEECCcH-HHHHHHHHHhccCCEEEEE
Confidence 01112458988855433 4566778899999999863
No 441
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.98 E-value=9.4 Score=35.29 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=52.5
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC-EEEEEcCCCCCCCCCCCccE
Q 022070 158 MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS-LSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~~fD~ 234 (303)
++|+-+|+|. |+++..|++. | ..|+.++.+++.++..+++ .|+.- ..... ..+. ..... ....++||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G--~~V~lv~r~~~~~~~i~~~---~Gl~i-~~~g~~~~~~-~~~~~-~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-G--LPVRLILRDRQRLAAYQQA---GGLTL-VEQGQASLYA-IPAET-ADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-C--CCeEEEEechHHHHHHhhc---CCeEE-eeCCcceeec-cCCCC-cccccccCE
Confidence 5799999998 5577777765 4 5799999887655544432 11110 00001 1111 11111 112368999
Q ss_pred EEEcCCC---chHHHHHHhcccCCcEEEE
Q 022070 235 IHVGAAA---PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 235 Iv~~~~~---~~v~~~~~~~LkpGG~lii 260 (303)
|+...-. +..++.+...+.++..++.
T Consensus 74 viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 74 LLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 9876532 4455667777888875544
No 442
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=84.72 E-value=2.7 Score=38.44 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=55.3
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC----CCCCC
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRKGW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D----~~~~~ 226 (303)
.++++.+|+-+|+ |. |..+..+|+..| .+|++++.+ +.+ ++.+.. .+ +...+ ... .
T Consensus 159 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~~----~~~----~~~g~~------~~-~~~~~~~~~l~~-~ 220 (325)
T cd08264 159 GLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSRK----DWL----KEFGAD------EV-VDYDEVEEKVKE-I 220 (325)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeHH----HHH----HHhCCC------ee-ecchHHHHHHHH-H
Confidence 4788999999997 55 888888999887 678777521 222 222221 11 00000 111 1
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
. +.+|+|+....- .......+.|+++|+++.
T Consensus 221 -~-~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 221 -T-KMADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred -h-CCCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 1 458998875443 566788999999999986
No 443
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=84.64 E-value=26 Score=31.80 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--C
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--F 229 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~---~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~ 229 (303)
..+...+|+|+|+-..+..+...+.+ -.+.+.+|+|...++...+.+...- ..-.+.-+.+|+...+.. .
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELPR 151 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhcccC
Confidence 34679999999999988888777643 2588999999998876555443321 112556677787543221 1
Q ss_pred CCccE-EEEcCCC--------chHHHHHHhcccCCcEEEEEEC
Q 022070 230 APYDA-IHVGAAA--------PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 230 ~~fD~-Iv~~~~~--------~~v~~~~~~~LkpGG~lii~v~ 263 (303)
+.--+ ++.+..+ ...+..+...|+||-.+++-+.
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22222 2333322 2345678889999999998664
No 444
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.57 E-value=6.9 Score=32.97 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
+-.|++++-+|=|+ |.-.+..++..| ++|+.+|++|-..-.|. .. -.++.. ..+. ....
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~--~d-----------Gf~v~~--~~~a---~~~a 79 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAA--MD-----------GFEVMT--LEEA---LRDA 79 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHH--HT-----------T-EEE---HHHH---TTT-
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhh--hc-----------CcEecC--HHHH---HhhC
Confidence 45788999999998 766666666666 89999999995544332 21 222222 1121 1456
Q ss_pred cEEEEcCCCchH-HHHHHhcccCCcEEEEEECCC
Q 022070 233 DAIHVGAAAPEI-PQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 233 D~Iv~~~~~~~v-~~~~~~~LkpGG~lii~v~~~ 265 (303)
|+|++......+ -.+-.+.||+|. ++..++..
T Consensus 80 di~vtaTG~~~vi~~e~~~~mkdga-il~n~Gh~ 112 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFRQMKDGA-ILANAGHF 112 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHHHS-TTE-EEEESSSS
T ss_pred CEEEECCCCccccCHHHHHHhcCCe-EEeccCcC
Confidence 999886665554 456667777764 44555543
No 445
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.49 E-value=3.1 Score=37.94 Aligned_cols=72 Identities=26% Similarity=0.289 Sum_probs=55.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 153 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
.+.+|+..+|+|+-+|+.|-.+.++. -.|++||--+-. +.+-.. ..|+-...|....-|...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma-----~sL~dt--------g~v~h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMA-----QSLMDT--------GQVTHLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhh-----hhhhcc--------cceeeeeccCcccccCCCCC
Confidence 47899999999999999999998874 799999965432 222221 47888888988876655788
Q ss_pred cEEEEcCC
Q 022070 233 DAIHVGAA 240 (303)
Q Consensus 233 D~Iv~~~~ 240 (303)
|-.+|+.+
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 98888864
No 446
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.44 E-value=1.8 Score=40.30 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=46.8
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEEEc
Q 022070 160 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG 238 (303)
Q Consensus 160 VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~fD~Iv~~ 238 (303)
|+|+-||.|+++.-+-+. |- ..+.++|+++..++.-+.|+.. .+..+|..+... ....+|+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~-~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GF-KCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CC-eEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999888765 42 3466899999998888777532 233455554321 12457999877
Q ss_pred CCC
Q 022070 239 AAA 241 (303)
Q Consensus 239 ~~~ 241 (303)
.++
T Consensus 67 ~PC 69 (315)
T TIGR00675 67 FPC 69 (315)
T ss_pred CCC
Confidence 665
No 447
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.40 E-value=17 Score=32.95 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--C---C
Q 022070 153 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--K---G 225 (303)
Q Consensus 153 ~l~~g~~VLDIGcG~--G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~--~---~ 225 (303)
.+.++.+||-.|++. |..+..++...| .+++.++.+++..+.+++ .+. .. .+...+.. . .
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~----~~~------~~-~~~~~~~~~~~~~~~ 229 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLFG--ATVIATAGSEDKLERAKE----LGA------DY-VIDYRKEDFVREVRE 229 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------Ce-EEecCChHHHHHHHH
Confidence 367888999999864 667777777766 688999988877666533 121 11 11111100 0 0
Q ss_pred CCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 226 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
......+|.++..... ...+.+.+.++++|.++..
T Consensus 230 ~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 230 LTGKRGVDVVVEHVGA-ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred HhCCCCCcEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 0112468999876554 4566778899999998864
No 448
>PRK08324 short chain dehydrogenase; Validated
Probab=84.39 E-value=6 Score=40.90 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-------
Q 022070 156 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 227 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g-~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------- 227 (303)
+|++||-.|++. .++..+++.+. ...+|+.++.+++..+.+.+.+... .++.++..|..+...
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 467899888643 33333333321 1268999999988776665544321 267788888765210
Q ss_pred ---CCCCccEEEEcCC
Q 022070 228 ---EFAPYDAIHVGAA 240 (303)
Q Consensus 228 ---~~~~fD~Iv~~~~ 240 (303)
..+.+|.||.+..
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1247899988765
No 449
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=84.35 E-value=6.4 Score=28.84 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=22.2
Q ss_pred CCEEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCC
Q 022070 157 GMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHI 190 (303)
Q Consensus 157 g~~VLDIGcG~G~-~t~~lA~~~g~~~~V~gvDis 190 (303)
.++||-|||.+|| ++..++..++..+..++|-..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3799999999997 555666666766788887654
No 450
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=84.31 E-value=11 Score=34.52 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=60.1
Q ss_pred CCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCC---CCCCCCC
Q 022070 157 GMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGR---KGWPEFA 230 (303)
Q Consensus 157 g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~-~D~~---~~~~~~~ 230 (303)
+.+|+-.|+ |. |..+..+|+..|. .+|++++.+++..+.+++ .+.. .+ +-. .+.. ... ...
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~------~~-~~~~~~~~~~i~~~-~~~ 216 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE----LGAD------HV-INHHQDLAEQLEAL-GIE 216 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh----cCCc------EE-EeCCccHHHHHHhh-CCC
Confidence 889999985 44 7788888888753 578999988887777643 2221 11 100 0110 011 114
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.+|+++....-....+.+.+.|+++|+++..
T Consensus 217 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 217 PVDYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred CCCEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 6899987655456778889999999999863
No 451
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.28 E-value=5.1 Score=36.81 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=50.5
Q ss_pred CCEEEEEcCCc-c-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022070 157 GMHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 233 (303)
Q Consensus 157 g~~VLDIGcG~-G-~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~~~~~fD 233 (303)
.++|.-+|.|- | .++..+.+. |....+++.|.+.+..+.+.+. + +.... .+... ......|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~l----g---------v~d~~~~~~~~--~~~~~aD 66 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALEL----G---------VIDELTVAGLA--EAAAEAD 66 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhc----C---------cccccccchhh--hhcccCC
Confidence 35789999987 4 455555554 6667789999998877766532 1 11111 11100 1224579
Q ss_pred EEEEcCCCchH---HHHHHhcccCCcEE
Q 022070 234 AIHVGAAAPEI---PQALIDQLKPGGRM 258 (303)
Q Consensus 234 ~Iv~~~~~~~v---~~~~~~~LkpGG~l 258 (303)
+|+...+.... .+++...|++|..+
T Consensus 67 ~VivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence 99888776543 44555556666443
No 452
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=83.34 E-value=4.8 Score=33.76 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 155 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 155 ~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
..|.+|.-.|+|..+.+..-.-..+++--.+.+|.++... |.. +....+.++.-+... . ...|.
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~----------G~~--~PGt~ipI~~p~~l~---~-~~pd~ 129 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQ----------GKY--LPGTHIPIVSPEELK---E-RKPDY 129 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGT----------TEE---TTT--EEEEGGG-----S-S--SE
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhc----------Ccc--cCCCCCeECCHHHHh---h-CCCCE
Confidence 5678999999999666533332222333456789876521 110 111245555544322 1 35688
Q ss_pred EEEcCCC--chHHHHHHhcccCCcEEEEEEC
Q 022070 235 IHVGAAA--PEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 235 Iv~~~~~--~~v~~~~~~~LkpGG~lii~v~ 263 (303)
|+..+.. +++.+.+.+.++.||.+|+|++
T Consensus 130 vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 130 VIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp EEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred EEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 7775422 4566666777889999999875
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.28 E-value=7.2 Score=33.83 Aligned_cols=80 Identities=18% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCEEEEEcCCc-cHH-HHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHhccCCccCCCCE
Q 022070 157 GMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSL 215 (303)
Q Consensus 157 g~~VLDIGcG~-G~~-t~~lA~~~g~~~~V~gvDis-------------------~~~l~~A~~~~~~~~~~~~~~~~~v 215 (303)
..+|+-+|||. |.. +..|+.. |- ++++.+|.+ ...++.+.+++.+..-. -++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-----v~i 93 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD-----IQV 93 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC-----CEE
Confidence 46899999997 654 4444544 43 588888876 34455566666553210 123
Q ss_pred EEEEcCCCCC-C-CCCCCccEEEEcCCCch
Q 022070 216 SVHVGDGRKG-W-PEFAPYDAIHVGAAAPE 243 (303)
Q Consensus 216 ~~~~~D~~~~-~-~~~~~fD~Iv~~~~~~~ 243 (303)
+.+....... . .....||+|+.......
T Consensus 94 ~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~ 123 (202)
T TIGR02356 94 TALKERVTAENLELLINNVDLVLDCTDNFA 123 (202)
T ss_pred EEehhcCCHHHHHHHHhCCCEEEECCCCHH
Confidence 3332222210 0 01257999998765533
No 454
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.24 E-value=11 Score=36.14 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=65.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 223 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~ 223 (303)
.+++..+......+ +|+-++=..|.++..++.. ++ +.+--|--.-...++|+..+++. .+.+++. +..
T Consensus 33 e~ll~~~~~~~~~~-~~~i~nd~fGal~~~l~~~-~~----~~~~ds~~~~~~~~~n~~~n~~~----~~~~~~~--~~~ 100 (378)
T PRK15001 33 EYLLQQLDDTEIRG-PVLILNDAFGALSCALAEH-KP----YSIGDSYISELATRENLRLNGID----ESSVKFL--DST 100 (378)
T ss_pred HHHHHHHhhcccCC-CEEEEcCchhHHHHHHHhC-CC----CeeehHHHHHHHHHHHHHHcCCC----cccceee--ccc
Confidence 55666665322223 7999999999999999954 33 23322333334456788887653 1234444 333
Q ss_pred CCCCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEE
Q 022070 224 KGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii 260 (303)
+.++ +.+|+|+.-.+. ++....+...|+||+.+++
T Consensus 101 ~~~~--~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 101 ADYP--QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred cccc--CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 4333 568999887664 4556778889999999774
No 455
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=82.91 E-value=2.6 Score=32.05 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=48.4
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc
Q 022070 163 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 242 (303)
Q Consensus 163 IGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~ 242 (303)
+-||+|..|..+++.. ++.+++.+. ++++...+..+.......||+|++..-+.
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGI-------DAEIEAVPESELEEYIDDADVVLLGPQVR 57 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCC-------ceEEEEecHHHHHHhcCCCCEEEEChhHH
Confidence 5689998777776654 345555443 46666666544322235799999998888
Q ss_pred hHHHHHHhcccCCcEEEEEEC
Q 022070 243 EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 243 ~v~~~~~~~LkpGG~lii~v~ 263 (303)
...+.+.+...+.+.=+..++
T Consensus 58 ~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 58 YMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHHhccCCCcEEEcC
Confidence 778888776655555444444
No 456
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.75 E-value=3.2 Score=39.85 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=37.2
Q ss_pred HHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 022070 146 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 202 (303)
Q Consensus 146 ~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~ 202 (303)
.++.|+ +.++++||-|.+|-.....+++. +| .+|++||+|+.+....+=+++
T Consensus 27 D~~aL~--i~~~d~vl~ItSaG~N~L~yL~~--~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALN--IGPDDRVLTITSAGCNALDYLLA--GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhC--CCCCCeEEEEccCCchHHHHHhc--CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 345555 89999999996655444444443 34 899999999999887765544
No 457
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.44 E-value=27 Score=30.33 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCc-cHHH-HHHHHHhCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022070 156 PGMHALDIGSGT-GYLT-ACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 231 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t-~~lA~~~g~~~~V~gvDi--s~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 231 (303)
.+.+||-||+|. |... ..+.+. | ++|+.++. .++..+.+. . ..+.+....+... ....
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g--a~V~VIs~~~~~~l~~l~~----~---------~~i~~~~~~~~~~--~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G--AHIVVISPELTENLVKLVE----E---------GKIRWKQKEFEPS--DIVD 70 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C--CeEEEEcCCCCHHHHHHHh----C---------CCEEEEecCCChh--hcCC
Confidence 467999999987 5433 334443 4 56777643 333322221 1 2455554444332 2256
Q ss_pred ccEEEEcCCCchHHHHHHhcccCC
Q 022070 232 YDAIHVGAAAPEIPQALIDQLKPG 255 (303)
Q Consensus 232 fD~Iv~~~~~~~v~~~~~~~LkpG 255 (303)
+|+|++...-+++-+.+.+..+.+
T Consensus 71 adlViaaT~d~elN~~i~~~a~~~ 94 (202)
T PRK06718 71 AFLVIAATNDPRVNEQVKEDLPEN 94 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHHHhC
Confidence 899998877766665555444444
No 458
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.34 E-value=1 Score=41.15 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 194 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l 194 (303)
.-.|++|||+|||+|.....+.... . ..+...|++.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG-A-VSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc-c-ceeeeEecchhhe
Confidence 3568899999999999988888773 3 6888889888776
No 459
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=82.16 E-value=3.2 Score=33.46 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCEEEEEcCCcc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022070 157 GMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 234 (303)
Q Consensus 157 g~~VLDIGcG~G-~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~ 234 (303)
..+|+|+|-|.= ..+..|++. | ..|+++|+.+. +.. ..+.++..|..+.... -...|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G--~dV~~tDi~~~-------~a~----------~g~~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-G--FDVIATDINPR-------KAP----------EGVNFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S---EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-C--CcEEEEECccc-------ccc----------cCcceeeecccCCCHHHhcCCcE
Confidence 349999999984 455666666 4 79999999987 111 2556788888763211 146899
Q ss_pred EEEcCCCchHHHHHHhcccC-CcEEE-EEECC
Q 022070 235 IHVGAAAPEIPQALIDQLKP-GGRMV-IPVGN 264 (303)
Q Consensus 235 Iv~~~~~~~v~~~~~~~Lkp-GG~li-i~v~~ 264 (303)
|++.-+-+++...+.++-+. |.-++ .|+++
T Consensus 74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~ 105 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAKKVGADLIIRPLGG 105 (127)
T ss_dssp EEEES--TTSHHHHHHHHHHHT-EEEEE-BTT
T ss_pred EEEeCCChHHhHHHHHHHHHhCCCEEEECCCC
Confidence 99998887776655544332 33333 35544
No 460
>PRK07806 short chain dehydrogenase; Provisional
Probab=82.01 E-value=19 Score=31.37 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCH-HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-------
Q 022070 157 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIP-ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 227 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g-~~~~V~gvDis~-~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------- 227 (303)
++++|-.|+. |.++..+++.+- ...+|+++..+. ...+...+.+...+ .++.++.+|..+...
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-------GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 5688988864 445555554432 225788887654 23333333333322 357778888775211
Q ss_pred ---CCCCccEEEEcCCCc-------------------hHHHHHHhcccCCcEEEEE
Q 022070 228 ---EFAPYDAIHVGAAAP-------------------EIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 228 ---~~~~fD~Iv~~~~~~-------------------~v~~~~~~~LkpGG~lii~ 261 (303)
..+..|.|+.+.... .+.+.+.+.++.+|++++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 113578887665321 2335566666666777653
No 461
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=81.95 E-value=3.1 Score=31.69 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=51.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022070 158 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 237 (303)
Q Consensus 158 ~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~ 237 (303)
.+|| +-||+|..|..++... ++.+++.++ ++++...+..+.......+|+|++
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi-------~~~v~a~~~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGV-------PVKIAAGSYGAAGEKLDDADVVLL 56 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCC-------cEEEEEecHHHHHhhcCCCCEEEE
Confidence 3666 6799998877777654 244444443 466666665442222256899999
Q ss_pred cCCCchHHHHHHhcccCCcEEEEEEC
Q 022070 238 GAAAPEIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 238 ~~~~~~v~~~~~~~LkpGG~lii~v~ 263 (303)
..-+.+..+.+.+...+-|.=+..++
T Consensus 57 ~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 57 APQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred CchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 99888888888877766554444444
No 462
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.81 E-value=11 Score=34.19 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=49.5
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022070 158 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 235 (303)
Q Consensus 158 ~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~I 235 (303)
++|.-||+|. |. ++..+++. | .+|+.++.+++.++..++. +.. +........ ............+|+|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g--~~V~~~~r~~~~~~~~~~~----g~~--~~~~~~~~~-~~~~~~~~~~~~~d~v 70 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G--HDVTLVARRGAHLDALNEN----GLR--LEDGEITVP-VLAADDPAELGPQDLV 70 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C--CeEEEEECChHHHHHHHHc----CCc--ccCCceeec-ccCCCChhHcCCCCEE
Confidence 4688999988 44 44555544 3 5899999877766554432 221 000111100 0001111112678999
Q ss_pred EEcCCC---chHHHHHHhcccCCcEEEE
Q 022070 236 HVGAAA---PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 236 v~~~~~---~~v~~~~~~~LkpGG~lii 260 (303)
+..... +.+.+.+...+.++..++.
T Consensus 71 ila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 71 ILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 877543 4455666666666655554
No 463
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=81.80 E-value=10 Score=34.36 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC----CCCCCCCC
Q 022070 157 GMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG----RKGWPEFA 230 (303)
Q Consensus 157 g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~----~~~~~~~~ 230 (303)
+.+||-.|+ |. |..+..+|+..| .+|+.++.+++..+.+++ .+.. .+ +...+. ...... +
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~~-~~~~~~~~~~~~~~~~-~ 212 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKS----LGAS------EV-LDREDLLDESKKPLLK-A 212 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCc------EE-EcchhHHHHHHHHhcC-C
Confidence 468998887 44 888888899886 679999999887776643 2211 11 100110 001111 3
Q ss_pred CccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 231 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 231 ~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.+|.|+..... ...+...+.++++|+++..
T Consensus 213 ~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 213 RWAGAIDTVGG-DVLANLLKQTKYGGVVASC 242 (325)
T ss_pred CccEEEECCch-HHHHHHHHhhcCCCEEEEE
Confidence 58988865443 4667888999999998863
No 464
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.21 E-value=10 Score=35.17 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELV-VSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPY 232 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l-~~A~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~~~~~f 232 (303)
++++|+-+|+|. |...+......+. .+|+.++.+++.. +.+++ + + ..... .+..+. ...+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~-~---g---------~~~~~~~~~~~~---l~~a 239 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKE-L---G---------GNAVPLDELLEL---LNEA 239 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHH-c---C---------CeEEeHHHHHHH---HhcC
Confidence 688999999987 6655444443222 5789999998755 33332 2 1 11111 121111 1457
Q ss_pred cEEEEcCCCchH---HHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~~~~~v---~~~~~~~LkpGG~lii~v~~ 264 (303)
|+|++....++. .+.+.+..+.++.+++-+..
T Consensus 240 DvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 240 DVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 999998876655 33333333336788876654
No 465
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.46 E-value=18 Score=29.03 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=53.7
Q ss_pred EEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHhccCCccCCCCEEE
Q 022070 159 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSLSV 217 (303)
Q Consensus 159 ~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis-------------------~~~l~~A~~~~~~~~~~~~~~~~~v~~ 217 (303)
+|+-+|||. |. .+..|++. |- ++++.+|.+ ...++.+++++.+..- .-+++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-----~v~i~~ 73 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-----GVNVTA 73 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-----CcEEEE
Confidence 478899985 55 33444443 43 578887754 2334555566655431 013333
Q ss_pred EEcCCCCCC--CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEEECCC
Q 022070 218 HVGDGRKGW--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 265 (303)
Q Consensus 218 ~~~D~~~~~--~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~~ 265 (303)
......... .....||+|+...........+.+..+.-|.-++..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 333322210 112579999988877555444545555556666655553
No 466
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=80.27 E-value=8.5 Score=35.82 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=67.0
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-
Q 022070 153 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF- 229 (303)
Q Consensus 153 ~l~~g~~VLDIGc-G~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 229 (303)
++++|++|+--|+ |. |...-.+|+.-| ++|+|+=-+++.++++++-+ +.. .-++.+..|..+.+...
T Consensus 147 qpk~GetvvVSaAaGaVGsvvgQiAKlkG--~rVVGiaGg~eK~~~l~~~l---GfD-----~~idyk~~d~~~~L~~a~ 216 (340)
T COG2130 147 QPKAGETVVVSAAAGAVGSVVGQIAKLKG--CRVVGIAGGAEKCDFLTEEL---GFD-----AGIDYKAEDFAQALKEAC 216 (340)
T ss_pred CCCCCCEEEEEecccccchHHHHHHHhhC--CeEEEecCCHHHHHHHHHhc---CCc-----eeeecCcccHHHHHHHHC
Confidence 5788988776554 43 888889999866 89999999999998887643 221 12344444433222111
Q ss_pred -CCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 230 -APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 230 -~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
...|+.|-+..- .+++.+...|++.+++++
T Consensus 217 P~GIDvyfeNVGg-~v~DAv~~~ln~~aRi~~ 247 (340)
T COG2130 217 PKGIDVYFENVGG-EVLDAVLPLLNLFARIPV 247 (340)
T ss_pred CCCeEEEEEcCCc-hHHHHHHHhhccccceee
Confidence 457877766554 678889999999999987
No 467
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=80.20 E-value=4.6 Score=37.76 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=49.8
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------CCCCCcc
Q 022070 161 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------PEFAPYD 233 (303)
Q Consensus 161 LDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------~~~~~fD 233 (303)
+|||+|.-.+-..+.... .+....++|++...+..|+++..++++. ..+.+++....+.. .....||
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 789887755544443332 2367899999999999999999988775 34444444322111 1124699
Q ss_pred EEEEcCCC
Q 022070 234 AIHVGAAA 241 (303)
Q Consensus 234 ~Iv~~~~~ 241 (303)
.+.|+.++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99999876
No 468
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=80.19 E-value=6.7 Score=30.27 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=53.9
Q ss_pred EEEEEcCCcc-HHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022070 159 HALDIGSGTG-YLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 236 (303)
Q Consensus 159 ~VLDIGcG~G-~~t~~lA~~~g~~~~V~-gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv 236 (303)
+|.-||+|.- ..-........+..+++ .+|.+++..+.+.+. . .+. ...|..+.+. ....|.|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~---~---------~~~-~~~~~~~ll~-~~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK---Y---------GIP-VYTDLEELLA-DEDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---T---------TSE-EESSHHHHHH-HTTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH---h---------ccc-chhHHHHHHH-hhcCCEEE
Confidence 6788999874 33322233333556766 469998877765433 2 233 3444433222 24789998
Q ss_pred EcCCCchHHHHHHhcccCCcEEEEE
Q 022070 237 VGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 237 ~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
+......-.+.+...|+-|--+++.
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred EecCCcchHHHHHHHHHcCCEEEEE
Confidence 8877766666777777777766663
No 469
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.93 E-value=16 Score=35.32 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022070 140 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 218 (303)
Q Consensus 140 p~~~~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~-~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~ 218 (303)
+.....+...+.......++++-+|+|. ++..+++.+.. +..|+.+|.+++.++.+++.. ..+.++
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----------~~~~~i 280 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----------PNTLVL 280 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----------CCCeEE
Confidence 3333444444433334457899888855 44444444322 268999999999887766532 256788
Q ss_pred EcCCCCCC----CCCCCccEEEEcCC
Q 022070 219 VGDGRKGW----PEFAPYDAIHVGAA 240 (303)
Q Consensus 219 ~~D~~~~~----~~~~~fD~Iv~~~~ 240 (303)
.+|..+.. .....+|.|++...
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCC
Confidence 88886521 12256788876543
No 470
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=79.84 E-value=6.5 Score=36.45 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=58.5
Q ss_pred CCCCEEEEEcC-C-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCC---CCCCC
Q 022070 155 KPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGR---KGWPE 228 (303)
Q Consensus 155 ~~g~~VLDIGc-G-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~---~~~~~ 228 (303)
.++.+||-.|+ | .|..+..+|+..| .+++++. +++..+.+++ .+.. .+ .....+.. .....
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G--~~v~~~~-~~~~~~~~~~----~g~~------~v~~~~~~~~~~~l~~~~~ 219 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAG--YKVITTA-SPKNFDLVKS----LGAD------AVFDYHDPDVVEDIRAATG 219 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcC--CeEEEEE-CcccHHHHHh----cCCC------EEEECCCchHHHHHHHhcC
Confidence 67889999996 3 3888889999887 5787776 6565555532 2221 11 11000100 01112
Q ss_pred CCCccEEEEcCCCchHHHHHHhcccC--CcEEEEE
Q 022070 229 FAPYDAIHVGAAAPEIPQALIDQLKP--GGRMVIP 261 (303)
Q Consensus 229 ~~~fD~Iv~~~~~~~v~~~~~~~Lkp--GG~lii~ 261 (303)
+.+|+|+.............++|++ +|+++..
T Consensus 220 -~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~ 253 (339)
T cd08249 220 -GKLRYALDCISTPESAQLCAEALGRSGGGKLVSL 253 (339)
T ss_pred -CCeeEEEEeeccchHHHHHHHHHhccCCCEEEEe
Confidence 4689998765544677888999999 9998863
No 471
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.71 E-value=3.9 Score=37.19 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEEEEcCCc-c-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hccCCcc----CCCCEEEEEcCCCCC
Q 022070 159 HALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------SAAAPLL----KEGSLSVHVGDGRKG 225 (303)
Q Consensus 159 ~VLDIGcG~-G-~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~-------~~~~~~~----~~~~v~~~~~D~~~~ 225 (303)
+|--||+|. | .++..++.. | .+|+.+|++++.++.+++++.. .+..... ...++.+ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-G--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-C--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 678899997 4 455555554 4 5899999999999876644322 1110000 0012222 22321
Q ss_pred CCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEE
Q 022070 226 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii 260 (303)
..+..|+|+....- ..+++.+.+.++|+..++.
T Consensus 79 --~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 79 --DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred --HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12567999887642 3566777788888877643
No 472
>PRK10458 DNA cytosine methylase; Provisional
Probab=79.64 E-value=7.3 Score=38.49 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 022070 157 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 201 (303)
Q Consensus 157 g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~ 201 (303)
..+++|+-||.|+++.-+-.. |- ..|.++|+++.+.+.-+.|+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GG-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CC-EEEEEEechHHHHHHHHHHc
Confidence 559999999999999888665 42 36789999998887776664
No 473
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=79.51 E-value=7.6 Score=39.78 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=56.6
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCc
Q 022070 158 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 232 (303)
Q Consensus 158 ~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~~f 232 (303)
.+|+-+|||. |.......+..+ .+++.+|.|++.++.+++. ...++.||..+.. ...+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 5788898887 665444333323 5899999999999888652 4568899987631 122578
Q ss_pred cEEEEcCCCchHH---HHHHhcccCCcEEEEEE
Q 022070 233 DAIHVGAAAPEIP---QALIDQLKPGGRMVIPV 262 (303)
Q Consensus 233 D~Iv~~~~~~~v~---~~~~~~LkpGG~lii~v 262 (303)
|.+++...-.+.- -...+.+.|+-.++.-.
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 8887765443322 12334456666655433
No 474
>PRK07340 ornithine cyclodeaminase; Validated
Probab=79.10 E-value=18 Score=33.54 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=64.1
Q ss_pred cccCCCCcChHHHH---HHHHHHHHccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022070 130 AIGYNATISAPHMH---ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 205 (303)
Q Consensus 130 ~~~~g~~i~~p~~~---~~~l~~l~~~l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~ 205 (303)
.+=.+..++.-.+. +.....+. -....+|+-||||. |...........+..++...+.+++..+...+.+...
T Consensus 97 a~~d~~~lT~~RTaA~sala~~~La--~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~- 173 (304)
T PRK07340 97 FLLDGPTVTGRRTAAVSLLAARTLA--PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL- 173 (304)
T ss_pred EEEcChhHHHHHHHHHHHHHHHHhC--CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-
Confidence 33344455444433 33344443 34567999999987 5444433332233368999999988877666665432
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEEcCCCc-hHHHHHHhcccCCcEEEEEECC
Q 022070 206 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 206 ~~~~~~~~~v~~~~~D~~~~~~~~~~fD~Iv~~~~~~-~v~~~~~~~LkpGG~lii~v~~ 264 (303)
.+.+...+..+. ....|+|++..... .+++. .+|||- .+..++.
T Consensus 174 --------~~~~~~~~~~~a---v~~aDiVitaT~s~~Pl~~~---~~~~g~-hi~~iGs 218 (304)
T PRK07340 174 --------GPTAEPLDGEAI---PEAVDLVVTATTSRTPVYPE---AARAGR-LVVAVGA 218 (304)
T ss_pred --------CCeeEECCHHHH---hhcCCEEEEccCCCCceeCc---cCCCCC-EEEecCC
Confidence 222332232221 14689998765443 33432 367774 5555653
No 475
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.05 E-value=44 Score=29.90 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022070 153 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 224 (303)
Q Consensus 153 ~l~~g~~VLDIGcG--~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~------ 224 (303)
.+.++.+|+-.|+. .|..+..+++..| .+++.++.++...+.+++ .+.. . +...+...
T Consensus 141 ~~~~~~~vli~g~~~~~g~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~--~~~~~~~~~~~~~~ 206 (328)
T cd08268 141 GLRPGDSVLITAASSSVGLAAIQIANAAG--ATVIATTRTSEKRDALLA----LGAA------H--VIVTDEEDLVAEVL 206 (328)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----cCCC------E--EEecCCccHHHHHH
Confidence 36678899999873 3667777777765 689999888877666532 2211 1 11111100
Q ss_pred CCCCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 225 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.......+|.++..... .....+.+.++++|+++..
T Consensus 207 ~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~ 242 (328)
T cd08268 207 RITGGKGVDVVFDPVGG-PQFAKLADALAPGGTLVVY 242 (328)
T ss_pred HHhCCCCceEEEECCch-HhHHHHHHhhccCCEEEEE
Confidence 00111358999876554 4556778899999999853
No 476
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.96 E-value=14 Score=36.38 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHH-HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPE-LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~-~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.+++|+-||+|. |..++.++...| .+|+++|.++. ......+.+... .+++..++... ....+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~---------gv~~~~~~~~~---~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEAL---------GATVRLGPGPT---LPEDTD 80 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHc---------CCEEEECCCcc---ccCCCC
Confidence 366899999986 554444444434 68999996643 333333445443 56666655433 124589
Q ss_pred EEEEcCCC
Q 022070 234 AIHVGAAA 241 (303)
Q Consensus 234 ~Iv~~~~~ 241 (303)
+|+.....
T Consensus 81 ~Vv~s~Gi 88 (480)
T PRK01438 81 LVVTSPGW 88 (480)
T ss_pred EEEECCCc
Confidence 99887654
No 477
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.83 E-value=8.8 Score=34.80 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=45.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 144 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 144 ~~~l~~l~~~l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
+.+...+.....+++.|||.=+|+|......... + -+++|+|++++.++.+.+++...
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhh
Confidence 3444444434688999999999999877665554 4 68999999999999999998765
No 478
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.51 E-value=17 Score=36.53 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=55.1
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCc
Q 022070 158 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 232 (303)
Q Consensus 158 ~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~~f 232 (303)
.+++-+|||. |...+...+..+ ..++.+|.+++.++.+++ .....+.+|..+.. ...+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~-------------~g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE-------------RGIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-------------CCCeEEEcCCCCHHHHHhcCcccc
Confidence 4677788876 553333222222 589999999998888764 25678999988631 122578
Q ss_pred cEEEEcC-CCchH--HHHHHhcccCCcEEEEEECC
Q 022070 233 DAIHVGA-AAPEI--PQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 233 D~Iv~~~-~~~~v--~~~~~~~LkpGG~lii~v~~ 264 (303)
|.+++.. .-... .-...+...|+..++.-+.+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 8776543 22221 11233455677777765543
No 479
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.45 E-value=17 Score=33.12 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=53.4
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc---CC-cc--------CCCCEEEEEcCCC
Q 022070 158 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---AP-LL--------KEGSLSVHVGDGR 223 (303)
Q Consensus 158 ~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~---~~-~~--------~~~~v~~~~~D~~ 223 (303)
++|--||+|. |. ++..++.. | .+|+.+|++++.++.+++++.+..- .. .+ ...++.+ ..|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-G--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH
Confidence 4688899997 43 33444443 3 6899999999998888766432100 00 00 0023332 22322
Q ss_pred CCCCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEE
Q 022070 224 KGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMV 259 (303)
Q Consensus 224 ~~~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~li 259 (303)
+. ....|+|+....- ..+++.+...++++..++
T Consensus 80 ~a---~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 80 EA---VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred HH---hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 21 1456888877652 344566667777776543
No 480
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.29 E-value=7.1 Score=33.23 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=54.7
Q ss_pred EEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc----CCccC-------CCCEEEEEcCCCCC
Q 022070 159 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA----APLLK-------EGSLSVHVGDGRKG 225 (303)
Q Consensus 159 ~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~----~~~~~-------~~~v~~~~~D~~~~ 225 (303)
+|--||+|+ |. ++..+|.. | .+|+.+|.+++.++.+++++...-. ...+. ..++.+ ..|+.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence 467899998 64 44455544 5 7999999999999998887765110 00000 124443 233322
Q ss_pred CCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEEE
Q 022070 226 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii~ 261 (303)
....|+|+-...- ..+++++-+.++|+-.+.-.
T Consensus 76 ---~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 76 ---AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp ---GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred ---HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 1357888876532 34667777888888777653
No 481
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=78.27 E-value=3.8 Score=41.28 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCC
Q 022070 154 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 190 (303)
Q Consensus 154 l~~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis 190 (303)
.++|++|+-||+|+ |..++..+...| .+|+.+|..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 46789999999998 555555666655 578889843
No 482
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.13 E-value=11 Score=34.90 Aligned_cols=75 Identities=19% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022070 156 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 226 (303)
Q Consensus 156 ~g~~VLDIGcG~G~---~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------ 226 (303)
.|+.||--|.|+|. .+..+|++. ++++..|+++.-.+...+.+++.| ++.....|..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~g--------~~~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKIG--------EAKAYTCDISDREEIYRLA 105 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHHHHhcC--------ceeEEEecCCCHHHHHHHH
Confidence 57899999999974 556667763 689999999988888877777642 5677777876521
Q ss_pred ----CCCCCccEEEEcCCC
Q 022070 227 ----PEFAPYDAIHVGAAA 241 (303)
Q Consensus 227 ----~~~~~fD~Iv~~~~~ 241 (303)
.+.|..|++|.+++.
T Consensus 106 ~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 106 KKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHhcCCceEEEecccc
Confidence 233788999988754
No 483
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=77.62 E-value=8.7 Score=34.81 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CCC
Q 022070 154 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GWP 227 (303)
Q Consensus 154 l~~g~~VLDIGcG--~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~~ 227 (303)
+.++.+||-.|++ .|..+..+|+..| .+++++..+++..+.+++ .+.. .+ .....+... ...
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~~~ 203 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLG--FKTINVVRRDEQVEELKA----LGAD------EVIDSSPEDLAQRVKEAT 203 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecChHHHHHHHh----cCCC------EEecccchhHHHHHHHHh
Confidence 5788999998873 3888888999877 678888888776666632 2221 11 100001000 011
Q ss_pred CCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 228 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 228 ~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
....+|+|+....... .....++|+++|+++.
T Consensus 204 ~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 204 GGAGARLALDAVGGES-ATRLARSLRPGGTLVN 235 (323)
T ss_pred cCCCceEEEECCCCHH-HHHHHHhhCCCCEEEE
Confidence 2246899987655544 4566789999999885
No 484
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.25 E-value=12 Score=35.27 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=46.5
Q ss_pred CCEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHHhccCCccCCC
Q 022070 157 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEG 213 (303)
Q Consensus 157 g~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~---------------------~~l~~A~~~~~~~~~~~~~~~~ 213 (303)
..+|+-||||. |. .+..|++. |- ++++.+|.+. ..++.|++++.+..-. -
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~-----v 96 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE-----V 96 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC-----c
Confidence 46899999996 55 34445554 43 5888898874 2456666777664311 2
Q ss_pred CEEEEEcCCCCC-C-CCCCCccEEEEcCCCc
Q 022070 214 SLSVHVGDGRKG-W-PEFAPYDAIHVGAAAP 242 (303)
Q Consensus 214 ~v~~~~~D~~~~-~-~~~~~fD~Iv~~~~~~ 242 (303)
+++.+..+.... . .....+|+|+....-.
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~ 127 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIIDATDNF 127 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEEcCCCH
Confidence 345555554311 0 1125699998876543
No 485
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=77.24 E-value=27 Score=31.04 Aligned_cols=95 Identities=20% Similarity=0.166 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CC
Q 022070 153 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG--~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~ 226 (303)
.+.++.+|+-.|++ .|..+..+++..| .+++.++.+++..+.+++ .+. +.+ .....+..+ ..
T Consensus 136 ~~~~~~~vlv~g~~~~ig~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~~~~~~ 203 (323)
T cd05276 136 GLKAGETVLIHGGASGVGTAAIQLAKALG--ARVIATAGSEEKLEACRA----LGA------DVAINYRTEDFAEEVKEA 203 (323)
T ss_pred CCCCCCEEEEEcCcChHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----cCC------CEEEeCCchhHHHHHHHH
Confidence 46788999999963 3777777888776 678999888877766633 221 111 100001000 00
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii 260 (303)
.....+|+++...... ......+.++++|+++.
T Consensus 204 ~~~~~~d~vi~~~g~~-~~~~~~~~~~~~g~~i~ 236 (323)
T cd05276 204 TGGRGVDVILDMVGGD-YLARNLRALAPDGRLVL 236 (323)
T ss_pred hCCCCeEEEEECCchH-HHHHHHHhhccCCEEEE
Confidence 1124689998765533 35667788999998875
No 486
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.09 E-value=7.9 Score=35.90 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022070 154 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 204 (303)
Q Consensus 154 l~~g~~VLDIGcG~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~ 204 (303)
+.+|.+|.-||+|--....++++. + .+|.+||+++..+...+-++...
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~-P--a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA-P--ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC-C--ceeEEEeCCHHHHHHHHHHHHHH
Confidence 678999999999987777888875 2 89999999999988776665543
No 487
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.77 E-value=15 Score=33.98 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCEEEEEcCCc-c-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 157 GMHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 157 g~~VLDIGcG~-G-~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.++|+-||+|. | .++..+++. | ..|+.+..++. +. ....++.-.....+..+............+.+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g--~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-G--FDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C--CeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 46899999998 4 466666665 4 56777666542 21 2222221000001111110011111112367999
Q ss_pred EEEcCCC---chHHHHHHhcccCCcEEEE
Q 022070 235 IHVGAAA---PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 235 Iv~~~~~---~~v~~~~~~~LkpGG~lii 260 (303)
|+..... ..+.+.+...+++++.++.
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 9877443 4455667777888887654
No 488
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=76.75 E-value=43 Score=29.84 Aligned_cols=96 Identities=23% Similarity=0.182 Sum_probs=58.3
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCC---CC
Q 022070 153 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---GW 226 (303)
Q Consensus 153 ~l~~g~~VLDIGcG--~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v-~~~~~D~~~---~~ 226 (303)
.+.++++|+-.|+. .|..+..+++..| .+|+.++.+++..+.+.+ .+.. .+ .....+..+ ..
T Consensus 141 ~~~~g~~vlI~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~~~~~~ 208 (325)
T cd08253 141 GAKAGETVLVHGGSGAVGHAAVQLARWAG--ARVIATASSAEGAELVRQ----AGAD------AVFNYRAEDLADRILAA 208 (325)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC------EEEeCCCcCHHHHHHHH
Confidence 46788999999863 2667777777765 789999988877766643 2221 11 110001000 01
Q ss_pred CCCCCccEEEEcCCCchHHHHHHhcccCCcEEEEE
Q 022070 227 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 227 ~~~~~fD~Iv~~~~~~~v~~~~~~~LkpGG~lii~ 261 (303)
.....+|.++...... ..+...+.++++|+++..
T Consensus 209 ~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~ 242 (325)
T cd08253 209 TAGQGVDVIIEVLANV-NLAKDLDVLAPGGRIVVY 242 (325)
T ss_pred cCCCceEEEEECCchH-HHHHHHHhhCCCCEEEEE
Confidence 1224689998765443 345667889999998853
No 489
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.75 E-value=15 Score=31.95 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-------
Q 022070 156 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 227 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~t~~lA~~~g-~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------- 227 (303)
+++++|-+|++ |.++..+++.+. ...+|+.++.++..++.+.+.+...+ .++.++..|..+...
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------TEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 35689988864 444444444332 12589999999877666655554432 367778888764210
Q ss_pred ---CCCCccEEEEcCC
Q 022070 228 ---EFAPYDAIHVGAA 240 (303)
Q Consensus 228 ---~~~~fD~Iv~~~~ 240 (303)
..+++|.||.+..
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1146799987754
No 490
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=76.72 E-value=10 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022070 156 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 234 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD~ 234 (303)
.+.+||-||+|- |...+......|. .+++.+..+.+..+...+.+.. .++++..-+-.. .....+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~~~~~~~--~~~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG---------VNIEAIPLEDLE--EALQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG---------CSEEEEEGGGHC--HHHHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc---------cccceeeHHHHH--HHHhhCCe
Confidence 477999999986 4444443333343 4699999998766655555422 356665443222 12257999
Q ss_pred EEEcCCCc
Q 022070 235 IHVGAAAP 242 (303)
Q Consensus 235 Iv~~~~~~ 242 (303)
|+...+..
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99886553
No 491
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.61 E-value=6.4 Score=34.22 Aligned_cols=82 Identities=16% Similarity=-0.030 Sum_probs=54.7
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022070 154 LKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 232 (303)
Q Consensus 154 l~~g~~VLDIGcG-~G~~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~f 232 (303)
...+++||-+|.- ||.+++.+... ..+|+.+|+.|.+-.... ++|.|..+ ... ..|.+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp--------------~~v~Fr~~--~~~--~~G~~ 100 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP--------------NNVKFRNL--LKF--IRGEV 100 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC--------------CCccHhhh--cCC--CCCce
Confidence 4567899999986 46655544433 379999999987633221 45666544 232 33889
Q ss_pred cEEEEcCCCchHHHHHHhcccCCc
Q 022070 233 DAIHVGAAAPEIPQALIDQLKPGG 256 (303)
Q Consensus 233 D~Iv~~~~~~~v~~~~~~~LkpGG 256 (303)
|+|+-...+-.+-.+..+-+.|+-
T Consensus 101 DlivDlTGlGG~~Pe~L~~fnp~v 124 (254)
T COG4017 101 DLIVDLTGLGGIEPEFLAKFNPKV 124 (254)
T ss_pred eEEEeccccCCCCHHHHhccCCce
Confidence 999987766666566667778873
No 492
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.58 E-value=22 Score=32.33 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=47.3
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022070 158 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 234 (303)
Q Consensus 158 ~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~fD~ 234 (303)
++|.-+|+|. |. ++..+++. | ..|+.++. ++.++..++ .++..........+ .........+ ...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g--~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G--RDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C--CceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence 4688899998 44 44555554 4 57888887 655554332 22110000001111 0001111111 257898
Q ss_pred EEEcCC---CchHHHHHHhcccCCcEEEE
Q 022070 235 IHVGAA---APEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 235 Iv~~~~---~~~v~~~~~~~LkpGG~lii 260 (303)
|+.... .+.+.+.+...++++..++.
T Consensus 72 vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 877654 34555666666777655443
No 493
>PRK10637 cysG siroheme synthase; Provisional
Probab=76.52 E-value=17 Score=35.77 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCccHH--HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 156 PGMHALDIGSGTGYL--TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~G~~--t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.+.+||-||.|.=.. ...+.+ .|....|++=+++++..+.+.+ .+++++..++.... ...++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~-~ga~v~visp~~~~~~~~l~~~-------------~~i~~~~~~~~~~d--l~~~~ 74 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD-AGARLTVNALAFIPQFTAWADA-------------GMLTLVEGPFDESL--LDTCW 74 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHH--hCCCE
Confidence 467999999998332 233333 3433444444777766444321 47888887775432 24678
Q ss_pred EEEEcCCCchHHHHHHhcccCCcEEEEEECC
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG~lii~v~~ 264 (303)
+|++...-+++-+.+.+.-+..|.++-.+.+
T Consensus 75 lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 75 LAIAATDDDAVNQRVSEAAEARRIFCNVVDA 105 (457)
T ss_pred EEEECCCCHHHhHHHHHHHHHcCcEEEECCC
Confidence 8888877777777777777777777654444
No 494
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=76.19 E-value=9.7 Score=30.76 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=48.0
Q ss_pred EEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEE
Q 022070 160 ALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIH 236 (303)
Q Consensus 160 VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~fD~Iv 236 (303)
|+-+|+|. |. ++..|++ .+ .+|+.+...+ .++..+ +.++.-.....+..+......... ...+.||+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g--~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AG--HDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TT--CEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHH-CC--CceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 46688887 54 4444444 34 6899999877 555432 222210000000111111101110 1236899998
Q ss_pred EcCCC---chHHHHHHhcccCCcEEEEE
Q 022070 237 VGAAA---PEIPQALIDQLKPGGRMVIP 261 (303)
Q Consensus 237 ~~~~~---~~v~~~~~~~LkpGG~lii~ 261 (303)
+..-. +.+.+.+...++++..+++.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEE
Confidence 87633 45567788888888666653
No 495
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=76.16 E-value=2.7 Score=41.27 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=26.7
Q ss_pred CCccEEEEcCCCc---hHHHHHHhcccCCcEEEEEECC
Q 022070 230 APYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGN 264 (303)
Q Consensus 230 ~~fD~Iv~~~~~~---~v~~~~~~~LkpGG~lii~v~~ 264 (303)
...|+|++..+-+ .+.+.+...||||..|.++.+-
T Consensus 96 ~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 96 PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 4679998776543 3457788999999999987764
No 496
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.12 E-value=9.6 Score=33.63 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=44.7
Q ss_pred CCEEEEEcCCc-cHHH-HHHHHHhCCCcEEEEEe-------------------CCHHHHHHHHHHHHHhccCCccCCCCE
Q 022070 157 GMHALDIGSGT-GYLT-ACFALMVGPQGRAVGVE-------------------HIPELVVSSIQNIEKSAAAPLLKEGSL 215 (303)
Q Consensus 157 g~~VLDIGcG~-G~~t-~~lA~~~g~~~~V~gvD-------------------is~~~l~~A~~~~~~~~~~~~~~~~~v 215 (303)
..+|+-+|||. |... ..|++. |- ++++.+| +-...++.+++++.+..-. -++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-----~~i 93 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GV-GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-----VEI 93 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC-CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-----CEE
Confidence 46899999996 6544 444444 44 5777774 4445567777777665311 133
Q ss_pred EEEEcCCCCC-C-CCCCCccEEEEcCCCch
Q 022070 216 SVHVGDGRKG-W-PEFAPYDAIHVGAAAPE 243 (303)
Q Consensus 216 ~~~~~D~~~~-~-~~~~~fD~Iv~~~~~~~ 243 (303)
+.+....... . .....+|+|+.......
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~ 123 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTDNFA 123 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCCCHH
Confidence 3333332110 0 01146899998876543
No 497
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.11 E-value=14 Score=33.58 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=54.5
Q ss_pred EEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh---ccCC-ccC-------CCCEEEEEcCCCCC
Q 022070 159 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS---AAAP-LLK-------EGSLSVHVGDGRKG 225 (303)
Q Consensus 159 ~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~---~~~~-~~~-------~~~v~~~~~D~~~~ 225 (303)
+|.-||+|. |. .+..+++. | .+|+.+|.+++.++.+.++.... +... .+. ..++++. .+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-G--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH-
Confidence 688899987 44 44445544 4 68999999999999887654321 1000 000 0122221 22222
Q ss_pred CCCCCCccEEEEcCCCc-----hHHHHHHhcccCCcEEEEEEC
Q 022070 226 WPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPVG 263 (303)
Q Consensus 226 ~~~~~~fD~Iv~~~~~~-----~v~~~~~~~LkpGG~lii~v~ 263 (303)
.....|+|+....-. .++..+.+.++++..++....
T Consensus 78 --~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 78 --AVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred --hhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 124569888665432 334556677788876655443
No 498
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.09 E-value=21 Score=32.53 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=55.1
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-------ccCCcc----CCCCEEEEEcCCCC
Q 022070 158 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-------AAAPLL----KEGSLSVHVGDGRK 224 (303)
Q Consensus 158 ~~VLDIGcG~-G~-~t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~-------~~~~~~----~~~~v~~~~~D~~~ 224 (303)
.+|.-||+|. |. ++..++.. | .+|+..|.+++.++.+.+++.+. +..+.. ...++.+. .|. +
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-G--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 4688899997 43 44445544 3 68999999999988876544322 110000 00123322 222 1
Q ss_pred CCCCCCCccEEEEcCCC-----chHHHHHHhcccCCcEEEE
Q 022070 225 GWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVI 260 (303)
Q Consensus 225 ~~~~~~~fD~Iv~~~~~-----~~v~~~~~~~LkpGG~lii 260 (303)
.....|+|+....- +.+++.+...++++..++.
T Consensus 80 ---~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 80 ---DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ---HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12467988877643 3445677778888876653
No 499
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=75.64 E-value=15 Score=32.46 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=43.8
Q ss_pred CEEEEEcCCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--C--CCCC
Q 022070 158 MHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--P--EFAP 231 (303)
Q Consensus 158 ~~VLDIGcG~-G~~-t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~--~~~~ 231 (303)
++++-+|||. |+. +..|++. | ..|+.+|.+++.++..... + .....+.+|..+.- . ....
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g--~~Vv~Id~d~~~~~~~~~~--~---------~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G--HNVVLIDRDEERVEEFLAD--E---------LDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C--CceEEEEcCHHHHHHHhhh--h---------cceEEEEecCCCHHHHHhcCCCc
Confidence 4688899987 553 3334433 3 5899999999987763321 1 25678888887621 1 2257
Q ss_pred ccEEEEcC
Q 022070 232 YDAIHVGA 239 (303)
Q Consensus 232 fD~Iv~~~ 239 (303)
+|.++...
T Consensus 67 aD~vva~t 74 (225)
T COG0569 67 ADAVVAAT 74 (225)
T ss_pred CCEEEEee
Confidence 88887654
No 500
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.62 E-value=38 Score=28.10 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022070 156 PGMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 233 (303)
Q Consensus 156 ~g~~VLDIGcG~-G~~-t~~lA~~~g~~~~V~gvDis~~~l~~A~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~fD 233 (303)
.|.+||-||+|. |.- +..+.+. | ++|+.|+ ++..+..++ . ..+.+....+.+. ....+|
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g--a~V~VIs--p~~~~~l~~----l--------~~i~~~~~~~~~~--dl~~a~ 72 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G--AFVTVVS--PEICKEMKE----L--------PYITWKQKTFSND--DIKDAH 72 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C--CEEEEEc--CccCHHHHh----c--------cCcEEEecccChh--cCCCce
Confidence 478999999987 443 2333333 4 6777763 333222221 1 2344544444332 225689
Q ss_pred EEEEcCCCchHHHHHHhcccCCc
Q 022070 234 AIHVGAAAPEIPQALIDQLKPGG 256 (303)
Q Consensus 234 ~Iv~~~~~~~v~~~~~~~LkpGG 256 (303)
+|++...-+++-..+...-+.++
T Consensus 73 lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 73 LIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred EEEECCCCHHHHHHHHHHHHHCC
Confidence 99988766665555554444444
Done!