Query 022071
Match_columns 303
No_of_seqs 203 out of 1190
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 3.2E-87 6.9E-92 634.0 28.1 303 1-303 106-408 (408)
2 KOG2288 Galactosyltransferases 100.0 2.7E-72 5.9E-77 497.4 19.5 265 31-303 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 8.9E-53 1.9E-57 419.7 25.8 243 29-297 380-630 (636)
4 KOG2287 Galactosyltransferases 100.0 8.3E-52 1.8E-56 393.7 17.6 240 33-293 94-339 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.2E-49 2.5E-54 350.0 17.0 191 48-246 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 9E-34 2E-38 266.0 15.8 239 30-295 76-359 (382)
7 PF02434 Fringe: Fringe-like; 99.8 9.8E-20 2.1E-24 166.5 11.9 193 34-253 6-210 (252)
8 KOG2246 Galactosyltransferases 99.7 2.4E-16 5.2E-21 150.6 12.8 168 31-245 88-268 (364)
9 PLN03153 hypothetical protein; 99.3 7.4E-11 1.6E-15 115.7 16.6 184 33-253 121-320 (537)
10 KOG3708 Uncharacterized conser 97.6 0.00036 7.8E-09 68.6 9.3 149 35-236 27-182 (681)
11 PF13641 Glyco_tranf_2_3: Glyc 96.2 0.12 2.7E-06 45.1 12.9 185 35-241 2-198 (228)
12 TIGR03472 HpnI hopanoid biosyn 96.0 0.24 5.3E-06 47.6 14.8 190 34-241 41-241 (373)
13 PF01755 Glyco_transf_25: Glyc 96.0 0.19 4E-06 43.7 12.7 93 38-147 4-101 (200)
14 cd02520 Glucosylceramide_synth 95.3 1.3 2.8E-05 38.0 15.5 135 72-242 30-166 (196)
15 cd04192 GT_2_like_e Subfamily 95.0 0.78 1.7E-05 39.6 13.3 165 73-245 29-203 (229)
16 TIGR03469 HonB hopene-associat 94.9 1.5 3.3E-05 42.3 16.1 160 72-239 70-248 (384)
17 cd02525 Succinoglycan_BP_ExoA 94.8 2.4 5.1E-05 37.1 15.9 161 71-243 30-198 (249)
18 PF13506 Glyco_transf_21: Glyc 94.1 0.093 2E-06 45.3 5.1 121 116-244 16-145 (175)
19 cd02510 pp-GalNAc-T pp-GalNAc- 93.7 5.6 0.00012 36.6 16.7 124 122-245 74-219 (299)
20 PRK11204 N-glycosyltransferase 93.4 5.6 0.00012 38.5 16.8 190 33-245 53-254 (420)
21 PF00535 Glycos_transf_2: Glyc 93.2 2 4.3E-05 34.4 11.5 135 72-214 27-168 (169)
22 cd06439 CESA_like_1 CESA_like_ 92.5 5.8 0.00013 35.0 14.4 186 33-241 28-217 (251)
23 cd04186 GT_2_like_c Subfamily 92.2 5.2 0.00011 32.2 14.6 83 127-241 70-153 (166)
24 cd06421 CESA_CelA_like CESA_Ce 91.9 6.8 0.00015 33.9 13.9 119 123-247 76-207 (234)
25 cd06532 Glyco_transf_25 Glycos 91.4 3.3 7.2E-05 33.6 10.5 117 38-220 2-119 (128)
26 cd06423 CESA_like CESA_like is 90.2 7 0.00015 31.1 11.5 95 121-215 68-170 (180)
27 cd04187 DPM1_like_bac Bacteria 89.6 3.3 7.1E-05 34.6 9.4 133 72-216 29-164 (181)
28 cd04185 GT_2_like_b Subfamily 89.2 13 0.00028 31.5 13.7 92 119-239 68-160 (202)
29 PF04646 DUF604: Protein of un 87.2 0.92 2E-05 41.5 4.5 53 200-252 12-68 (255)
30 PF13632 Glyco_trans_2_3: Glyc 86.5 2.4 5.3E-05 36.0 6.7 116 134-253 1-126 (193)
31 PRK14583 hmsR N-glycosyltransf 86.4 35 0.00076 33.5 18.5 156 72-245 104-275 (444)
32 cd02526 GT2_RfbF_like RfbF is 85.2 24 0.00052 30.6 12.6 138 100-241 46-192 (237)
33 cd04195 GT2_AmsE_like GT2_AmsE 84.6 23 0.0005 29.8 13.7 114 122-244 71-194 (201)
34 cd04184 GT2_RfbC_Mx_like Myxoc 84.3 24 0.00051 29.7 16.8 112 122-242 74-190 (202)
35 cd04196 GT_2_like_d Subfamily 83.7 25 0.00055 29.6 17.5 171 51-238 11-189 (214)
36 cd06435 CESA_NdvC_like NdvC_li 82.1 33 0.00072 29.7 14.4 114 122-241 73-197 (236)
37 COG1215 Glycosyltransferases, 81.5 42 0.00091 32.2 13.7 194 34-246 54-260 (439)
38 cd06433 GT_2_WfgS_like WfgS an 81.2 30 0.00064 28.6 15.7 115 121-242 65-183 (202)
39 PRK10714 undecaprenyl phosphat 79.7 52 0.0011 31.0 13.3 134 72-216 38-174 (325)
40 PF10111 Glyco_tranf_2_2: Glyc 76.5 62 0.0013 29.6 14.0 165 70-242 32-211 (281)
41 cd06420 GT2_Chondriotin_Pol_N 76.4 42 0.0009 27.6 15.3 97 122-239 70-166 (182)
42 cd04191 Glucan_BSP_ModH Glucan 74.4 68 0.0015 29.1 14.4 126 114-241 77-219 (254)
43 cd04179 DPM_DPG-synthase_like 72.7 39 0.00085 27.8 9.5 133 72-215 28-167 (185)
44 TIGR03030 CelA cellulose synth 68.6 1.4E+02 0.0029 31.6 14.3 134 116-253 214-360 (713)
45 cd06437 CESA_CaSu_A2 Cellulose 66.8 85 0.0018 27.2 15.7 118 122-245 78-207 (232)
46 cd02514 GT13_GLCNAC-TI GT13_GL 66.1 28 0.00062 33.3 7.9 81 122-214 88-174 (334)
47 cd04188 DPG_synthase DPG_synth 63.6 87 0.0019 26.6 10.0 157 72-241 30-196 (211)
48 PLN03181 glycosyltransferase; 59.4 59 0.0013 32.2 8.7 93 51-146 109-214 (453)
49 cd06434 GT2_HAS Hyaluronan syn 58.0 1.2E+02 0.0026 26.0 12.6 153 72-241 28-201 (235)
50 cd06913 beta3GnTL1_like Beta 1 57.8 1.2E+02 0.0026 25.9 11.3 44 123-166 76-119 (219)
51 COG4092 Predicted glycosyltran 56.6 42 0.0009 31.4 6.8 163 70-238 36-217 (346)
52 TIGR03111 glyc2_xrt_Gpos1 puta 56.4 2.1E+02 0.0045 28.1 14.3 127 121-250 121-266 (439)
53 cd06427 CESA_like_2 CESA_like_ 54.3 1.5E+02 0.0032 25.9 13.2 118 121-241 74-200 (241)
54 PRK10018 putative glycosyl tra 53.1 1.9E+02 0.0041 26.7 12.7 34 123-156 77-110 (279)
55 cd06442 DPM1_like DPM1_like re 51.8 1.5E+02 0.0032 25.1 10.5 90 125-215 72-167 (224)
56 PLN02726 dolichyl-phosphate be 51.8 1.7E+02 0.0036 25.7 17.7 155 72-243 40-210 (243)
57 PRK05454 glucosyltransferase M 50.7 2.2E+02 0.0047 30.1 11.9 200 30-245 120-350 (691)
58 COG1216 Predicted glycosyltran 50.1 2.1E+02 0.0045 26.4 16.7 137 100-239 55-206 (305)
59 PRK14716 bacteriophage N4 adso 50.0 2.9E+02 0.0063 28.0 15.2 107 131-241 158-277 (504)
60 cd00761 Glyco_tranf_GTA_type G 49.0 1.2E+02 0.0025 23.1 13.9 34 122-155 68-101 (156)
61 cd02522 GT_2_like_a GT_2_like_ 47.5 1.7E+02 0.0037 24.6 15.4 106 124-241 65-175 (221)
62 TIGR01556 rhamnosyltran L-rham 41.4 1.5E+02 0.0033 26.6 8.3 113 122-237 65-185 (281)
63 PLN03182 xyloglucan 6-xylosylt 40.7 1.8E+02 0.004 28.7 8.8 93 51-144 106-210 (429)
64 PHA01631 hypothetical protein 38.3 96 0.0021 26.8 5.8 92 100-217 39-133 (176)
65 PF13704 Glyco_tranf_2_4: Glyc 37.1 1.6E+02 0.0035 21.8 6.6 48 100-148 40-88 (97)
66 PF04666 Glyco_transf_54: N-Ac 34.9 1.6E+02 0.0034 27.8 7.3 52 29-83 47-98 (297)
67 PF03452 Anp1: Anp1; InterPro 34.1 2.8E+02 0.006 25.8 8.6 87 70-157 54-168 (269)
68 KOG2547 Ceramide glucosyltrans 30.9 2.8E+02 0.0061 27.3 8.2 81 72-156 114-195 (431)
69 PF03490 Varsurf_PPLC: Variant 29.9 30 0.00066 23.6 1.2 26 55-83 9-34 (51)
70 PF09258 Glyco_transf_64: Glyc 28.6 70 0.0015 29.1 3.7 101 130-236 74-180 (247)
71 cd06438 EpsO_like EpsO protein 27.7 3.5E+02 0.0076 22.3 12.5 89 121-213 70-169 (183)
72 PRK11234 nfrB bacteriophage N4 25.3 8.5E+02 0.018 26.0 13.0 194 31-242 60-275 (727)
73 PF12098 DUF3574: Protein of u 22.6 90 0.002 24.7 2.8 36 26-61 52-88 (104)
74 PRK10073 putative glycosyl tra 21.6 6.7E+02 0.015 23.4 14.0 76 72-156 35-110 (328)
75 PF13712 Glyco_tranf_2_5: Glyc 21.2 1.1E+02 0.0024 27.1 3.5 31 121-151 44-74 (217)
76 PF05637 Glyco_transf_34: gala 21.1 1.2E+02 0.0027 27.3 3.9 31 115-145 60-90 (239)
77 cd04190 Chitin_synth_C C-termi 20.7 1.8E+02 0.0039 25.7 4.8 110 130-239 72-206 (244)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.2e-87 Score=634.03 Aligned_cols=303 Identities=94% Similarity=1.504 Sum_probs=283.0
Q ss_pred ChhhhHHHhhhhhccCCCCCccccccCCCCCCceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEee
Q 022071 1 MELAAARAAQESILSGSPLSEDLKKTESSGKRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIG 80 (303)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG 80 (303)
||||+||+.+..+.++.+.+++....+...++++++||+|+|+|+|++||++||+|||+.++.+.+++...+++++||||
T Consensus 106 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG 185 (408)
T PLN03193 106 MELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIG 185 (408)
T ss_pred HHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEee
Confidence 79999999777777777776666556777788999999999999999999999999999876666677778999999999
Q ss_pred cCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCC
Q 022071 81 HSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP 160 (303)
Q Consensus 81 ~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~ 160 (303)
++.++++.++++|++|++.|||||++||+|+|.|||+||+++|+|+.++++++||||+|||+|||+++|+.+|...+.++
T Consensus 186 ~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~ 265 (408)
T PLN03193 186 HSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKP 265 (408)
T ss_pred cCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCC
Confidence 98765678999999999999999999999999999999999999999999999999999999999999999998877677
Q ss_pred CeeEEEeecCcccccCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC
Q 022071 161 RVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDV 240 (303)
Q Consensus 161 ~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v 240 (303)
++|+|+|+.+|++.+++.||++|++|+|+++++.|||||+|+|||||+|+|+.|+.+...+++|++|||++|+||.+|+|
T Consensus 266 rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V 345 (408)
T PLN03193 266 RVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDV 345 (408)
T ss_pred CEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCc
Confidence 89999999888877778899999999998888999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCcccCCCCCcccccccCCccccccccccccccCCHHHHHHHHHHccCCccccccccC
Q 022071 241 EHIDDRRLCCGTPPDCEWKAQAGNICVASFDWTCSGICRSADRIKEVHRRCGEGENALWSATF 303 (303)
Q Consensus 241 ~~~~~~~f~~~~~~~~~~k~~~~~~c~~~~~~~~sg~~~~~~~~~~~h~~~~~~~~~~~~~~~ 303 (303)
+|+|+++|||+++|+|+||+++|++|+++|||+|||+|+|++||+++|++|+|+++|+|+++|
T Consensus 346 ~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 346 EHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred eeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999876
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-72 Score=497.39 Aligned_cols=265 Identities=68% Similarity=1.149 Sum_probs=255.0
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeecc-cc
Q 022071 31 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLD-HV 109 (303)
Q Consensus 31 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d-~~ 109 (303)
+++++++|+|.|++++.+||+++|+||++.++.++++++..+|.++|+||+. +.+++.+++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 7899999999999999999999999999999999999999999999999994 347899999999999999999999 99
Q ss_pred ccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCcccccc
Q 022071 110 EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFG 189 (303)
Q Consensus 110 D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~ 189 (303)
|+|.+|+.||+++|.+|.++++++||+|+|||+|||+..|...|++.+.++++|||||+++||+.+++.|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999998889999999999999999999999999 9999
Q ss_pred CCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEecCCCcccCCCCCcccccccCCccccc
Q 022071 190 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVAS 269 (303)
Q Consensus 190 ~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~~~~~~f~~~~~~~~~~k~~~~~~c~~~ 269 (303)
+.++ |+||+.|++|+||++++.+|+.|+..++.|.+|||+||.||.+|+|+|+|++++|+.++ |++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8776 99999999999999999999999999999999999999999999999999999999764 78899999999
Q ss_pred cccccccccCCHHHHHHHHHHccCCccccccccC
Q 022071 270 FDWTCSGICRSADRIKEVHRRCGEGENALWSATF 303 (303)
Q Consensus 270 ~~~~~sg~~~~~~~~~~~h~~~~~~~~~~~~~~~ 303 (303)
++|+|||+|+++.||.++|++|++...+.|...+
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999998754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.9e-53 Score=419.69 Aligned_cols=243 Identities=22% Similarity=0.339 Sum_probs=205.8
Q ss_pred CCCCceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccc
Q 022071 29 SGKRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDH 108 (303)
Q Consensus 29 ~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~ 108 (303)
.+..+++|||+|+|+|+|++||+|||+|||+... ..+.+++++|++|.+. ++.++.+|++|++.|+||||+||
T Consensus 380 ~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF 452 (636)
T PLN03133 380 SPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPF 452 (636)
T ss_pred CCCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEee
Confidence 3345799999999999999999999999998642 2245689999999986 46788999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEee-cCcccccCCCccccCcccc
Q 022071 109 VEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWK 187 (303)
Q Consensus 109 ~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~-~~pv~r~~~~Kw~~p~~~~ 187 (303)
.|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+.+|+|++. ..+|+|++.+|||+|.+.|
T Consensus 453 ~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey 532 (636)
T PLN03133 453 VDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW 532 (636)
T ss_pred echhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC
Confidence 999999999999999999989999999999999999999999999877666789999986 4578899999999997666
Q ss_pred ccCCCCCCCCCcccCceeecHHHHHHHHHhc--cccCCCCCChHHHHHHHh-----hCCCeEecCCCcccCCCCCccccc
Q 022071 188 FGEAGNRYFRHATGQLYAISKDLAAYISINQ--HVLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCEWKA 260 (303)
Q Consensus 188 ~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~--~~~~~~~~EDV~iG~~l~-----~l~v~~~~~~~f~~~~~~~~~~k~ 260 (303)
|.+.|||||+|+|||||+++|++|+..+ ..++.|++||||+|+|+. ++.+.+.++.+||.. .|
T Consensus 533 ---p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~---~C---- 602 (636)
T PLN03133 533 ---PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE---GC---- 602 (636)
T ss_pred ---CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC---cC----
Confidence 6789999999999999999999998764 578999999999999985 566778888888652 23
Q ss_pred ccCCccccccccccccccCCHHHHHHHHHHccCCccc
Q 022071 261 QAGNICVASFDWTCSGICRSADRIKEVHRRCGEGENA 297 (303)
Q Consensus 261 ~~~~~c~~~~~~~~sg~~~~~~~~~~~h~~~~~~~~~ 297 (303)
...+. ++ .-.+|+.|..+|+...+...+
T Consensus 603 ------~~~~i--~~-H~~sP~eM~~lW~~l~~~~~~ 630 (636)
T PLN03133 603 ------KDGYV--VA-HYQSPREMLCLWQKLQEGKRA 630 (636)
T ss_pred ------CCCeE--EE-ecCCHHHHHHHHHHHhccCCC
Confidence 32111 11 135689999999997666543
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-52 Score=393.70 Aligned_cols=240 Identities=22% Similarity=0.308 Sum_probs=205.9
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc
Q 022071 33 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 112 (303)
Q Consensus 33 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y 112 (303)
.++++++|+|+++|++||++||+|||+... ..+..++++|++|.++..+ .++.+|.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 479999999999999999999999999862 3467899999999987543 5689999999999999999999999
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEecCceeecHHHHHHHHhhh-CCCCCeeEEEee-cCcccccCCCccccCcccccc
Q 022071 113 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMK-SGPVLNQKGVRYHEPEYWKFG 189 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~-~~pv~r~~~~Kw~~p~~~~~~ 189 (303)
.|||+|+++++.|+.. |++++|++|+|||+|||+++|+.+|... .+.+.+|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999998 8999999999999999999999999998 778899999975 4688999999999998776
Q ss_pred CCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhC-CCeEecCCCcccCCC--CCcccccccCCcc
Q 022071 190 EAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL-DVEHIDDRRLCCGTP--PDCEWKAQAGNIC 266 (303)
Q Consensus 190 ~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l-~v~~~~~~~f~~~~~--~~~~~k~~~~~~c 266 (303)
|.+.||+||+|+|||||+++|+.|++++...+.+++|||++|+|++.. +|.++++..|..... ..|.++. .
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~----~- 319 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLSFDPCCYRD----L- 319 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccccccCCCCcccc----e-
Confidence 678999999999999999999999999999999999999999999877 999998888544321 2333321 0
Q ss_pred ccccccccccccCCHHHHHHHHHHccC
Q 022071 267 VASFDWTCSGICRSADRIKEVHRRCGE 293 (303)
Q Consensus 267 ~~~~~~~~sg~~~~~~~~~~~h~~~~~ 293 (303)
+.| .-.++..|..+++.+..
T Consensus 320 ---~~~----H~~~p~e~~~~w~~~~~ 339 (349)
T KOG2287|consen 320 ---LAV----HRLSPNEMIYLWKKLKD 339 (349)
T ss_pred ---EEE----ecCCHHHHHHHHHHhhc
Confidence 000 11226777788777665
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.2e-49 Score=350.02 Aligned_cols=191 Identities=29% Similarity=0.383 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHH
Q 022071 48 KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAV 127 (303)
Q Consensus 48 ~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~ 127 (303)
+||++||+||++... ....+++++||+|.+++.+..++..|.+|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999862 235789999999999855677888899999999999999999999999999999999999
Q ss_pred h-cCCcceEEEecCceeecHHHHHHHHhhh--CC-CCCeeEEEeecCcccccCCCccccCccccccCCCCCCCCCcccCc
Q 022071 128 S-LWDADFYVKVDDDVHVNIATLGQTLVRH--RS-KPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQL 203 (303)
Q Consensus 128 ~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~--~~-~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~g 203 (303)
+ |++++|++|+|||+|||+++|.++|... .. ...+|.+++..++++|++.+|||+|++.+ +.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 6679999999999999999999999987 23 34455555667788999999999998766 6789999999999
Q ss_pred eeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEecCC
Q 022071 204 YAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDR 246 (303)
Q Consensus 204 YilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~~~~~ 246 (303)
|+||+++|+.|+.++..++.+++|||++|+|+.+++|+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=9e-34 Score=265.99 Aligned_cols=239 Identities=17% Similarity=0.192 Sum_probs=178.0
Q ss_pred CCCceeEEEEEECCCCC--HHHHHHHHHHHhcCcccc-ccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeec
Q 022071 30 GKRRYLMVVGINTAFSS--RKRRDSVRATWMLQGEKR-KRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRL 106 (303)
Q Consensus 30 ~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~~~-~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~ 106 (303)
.+++.++++||.|..++ +.||+++|+||.+-.... +...-...+.++|++|..++.+-+.+++|.+|++.|+|||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 46789999999999998 899999999999976421 222113457789999999876668999999999999999999
Q ss_pred cc------------------cccccchhHHHHHHHHHHHh-cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEe
Q 022071 107 DH------------------VEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCM 167 (303)
Q Consensus 107 d~------------------~D~Y~nLt~Kt~~~~~wa~~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~ 167 (303)
|| .|++.|||+||+++|+|+.+ |++++||+|+|||+|||+++++++|+.. ++..+|+|.+
T Consensus 156 pf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v 234 (382)
T PTZ00210 156 PTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY 234 (382)
T ss_pred ecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence 99 77778899999999999999 7799999999999999999999999665 4566999997
Q ss_pred ecC-cccccCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccc--c---------------CCCCCChH
Q 022071 168 KSG-PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHV--L---------------HKYANEDV 229 (303)
Q Consensus 168 ~~~-pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~--~---------------~~~~~EDV 229 (303)
... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+..||+
T Consensus 235 ~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDi 296 (382)
T PTZ00210 235 NYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDV 296 (382)
T ss_pred CCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHH
Confidence 531 111 12479999999999999999999876432 1 13569999
Q ss_pred HHHHHH-hhCCCeEe--cCCCcccCCCCCcccccccCCcccc--ccccccccccCCHHHHHHHHHHccCCc
Q 022071 230 SLGSWF-IGLDVEHI--DDRRLCCGTPPDCEWKAQAGNICVA--SFDWTCSGICRSADRIKEVHRRCGEGE 295 (303)
Q Consensus 230 ~iG~~l-~~l~v~~~--~~~~f~~~~~~~~~~k~~~~~~c~~--~~~~~~sg~~~~~~~~~~~h~~~~~~~ 295 (303)
.+|.+| .+++.+.. -..++|++... +. ..|.. .++..|-.-|+. +.=..+|.+.+...
T Consensus 297 MvG~vLr~~~k~~~l~~V~~~~c~Fhd~------~~-~~~~~~v~~~sVvvHhike-~dYa~Lm~~F~n~~ 359 (382)
T PTZ00210 297 MVGMILREKVVYRNLISVEMGRCHFHNA------GK-FGVRKSVRNMSVVIHHIQE-ADYEMLMDYFPEGV 359 (382)
T ss_pred HHHHHHHHhcCcCceeeeccccccceec------CC-CCCccccccceEEEEecCH-HHHHHHHHHhcCCC
Confidence 999999 55543321 22344444211 11 11211 233345556664 46667777777653
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.81 E-value=9.8e-20 Score=166.47 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=99.9
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc
Q 022071 34 YLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 112 (303)
Q Consensus 34 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y 112 (303)
-+|+|+|+|++++. .|-.+|++||++.+. .+ .|+....+ +..|..+ ...+++..+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~---------~~--~~ifsd~~------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN---------KQ--TFIFSDAE------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG---------GG--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC---------Cc--eEEecCcc------ccccccc--cccccccCCCcchh
Confidence 46899999999865 566899999999873 12 34322221 2333333 23355665655555
Q ss_pred cchhHHHHHHHHHHHh-cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeec-CcccccCCCccccCccccccC
Q 022071 113 LELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKS-GPVLNQKGVRYHEPEYWKFGE 190 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~Kw~~p~~~~~~~ 190 (303)
...+++.++.+.+... ..+++|++++|||+||++++|.++|...++.+++|+|+... .+...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4444444444444222 35889999999999999999999999999999999999642 22210000000000
Q ss_pred CCCCCCCCc-ccCceeecHHHHHHHHHhc---cccCCC----CCChHHHHHHHhh-CCCeEecCCCcccCCC
Q 022071 191 AGNRYFRHA-TGQLYAISKDLAAYISINQ---HVLHKY----ANEDVSLGSWFIG-LDVEHIDDRRLCCGTP 253 (303)
Q Consensus 191 ~~~~Yp~y~-~G~gYilS~~l~~~i~~~~---~~~~~~----~~EDV~iG~~l~~-l~v~~~~~~~f~~~~~ 253 (303)
...-..|+ +|+||+||+.++++|.... ...... ..||+.||.|+.. |||+..|.+.|+...+
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 01222345 6899999999999995422 222222 3899999999988 9999999999987543
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.4e-16 Score=150.60 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=129.5
Q ss_pred CCceeEEEEEECCCCCHH-HHHHHHHHHhcCccccccccccCcEEEEEEe---ecCCCCCchhhHHHHHHHhhcCCeeec
Q 022071 31 KRRYLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVI---GHSATSGGILDRAIEAEDRKHGDFMRL 106 (303)
Q Consensus 31 ~~~~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~Fvl---G~~~~~~~~~~~~l~~E~~~~~Dil~~ 106 (303)
..+..+++.|+|.+.+.. |-+.+-+||++.++. ..|+- .+.. ..+ ..|..
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f-~~v~~ 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRF-PTVYY 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcC-ceeec
Confidence 568899999999998766 556999999999842 23433 3221 112 23478
Q ss_pred cccccccchhHHHHHHHHHHHh--cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCc
Q 022071 107 DHVEGYLELSAKTKIYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPE 184 (303)
Q Consensus 107 d~~D~Y~nLt~Kt~~~~~wa~~--~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~ 184 (303)
+..|+|+++..||..+|+++.+ ..+++|++|+|||||+.++||..+|..+.+++.+|+|+.... +.-
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~----------~~~- 210 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS----------YFQ- 210 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc----------ccc-
Confidence 8999999999999999999986 358999999999999999999999999999999999995310 110
Q ss_pred cccccCCCCCCCCCcccCceeecHHHHHHHHHhc----ccc-CCC--CCChHHHHHHHhhCCCeEecC
Q 022071 185 YWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ----HVL-HKY--ANEDVSLGSWFIGLDVEHIDD 245 (303)
Q Consensus 185 ~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~----~~~-~~~--~~EDV~iG~~l~~l~v~~~~~ 245 (303)
+.|- .+|+||++|+++.+.+++.. ... ..+ ..||+-||.||+.+||...|.
T Consensus 211 --------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 211 --------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred --------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 1221 47999999999998877643 212 223 389999999999999998776
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.30 E-value=7.4e-11 Score=115.69 Aligned_cols=184 Identities=18% Similarity=0.135 Sum_probs=116.1
Q ss_pred ceeEEEEEECCCCCH-HHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeecccccc
Q 022071 33 RYLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEG 111 (303)
Q Consensus 33 ~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~ 111 (303)
--.|+++|.+..+.. +|+..|+.+|.+.. -.| ++|+.....+. ..+..| --+.+. .|+
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~--------~rg--~v~ld~~~~~~--~~~~~~--------P~i~is-~d~ 179 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQ--------MRG--HVWLEEQVSPE--EGDDSL--------PPIMVS-EDT 179 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCccc--------cee--EEEecccCCCC--CCcCCC--------CCEEeC-CCc
Confidence 447889999888766 56789999999753 111 45554432210 000000 001111 111
Q ss_pred ----ccc---hhHH--HHHHHHHHHh--cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcc
Q 022071 112 ----YLE---LSAK--TKIYFATAVS--LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY 180 (303)
Q Consensus 112 ----Y~n---Lt~K--t~~~~~wa~~--~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw 180 (303)
|.| .... +..+...+.. .++++||+++|||||+.+++|+..|..+++++..|+|.....-
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~--------- 250 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH--------- 250 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc---------
Confidence 222 2221 1113333333 5899999999999999999999999999999999999853110
Q ss_pred ccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhcccc----CCCCCChHHHHHHHhhCCCeEecCCCcccCCC
Q 022071 181 HEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVL----HKYANEDVSLGSWFIGLDVEHIDDRRLCCGTP 253 (303)
Q Consensus 181 ~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~----~~~~~EDV~iG~~l~~l~v~~~~~~~f~~~~~ 253 (303)
.....| .|--.-+|+||+||+.+++.|....... +....+|.-||.|+..+||...+.++|+..+.
T Consensus 251 --~qn~~f-----~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~ 320 (537)
T PLN03153 251 --SANSYF-----SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDI 320 (537)
T ss_pred --cccccc-----ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccccc
Confidence 000011 1111147999999999999988753221 22346888999999999999999999987643
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00036 Score=68.63 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=98.3
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccc
Q 022071 35 LMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLE 114 (303)
Q Consensus 35 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~n 114 (303)
+|+++|+|. ..---+|-+|=+.+- =++.|+.+.+... .|.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhv-----------prv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHV-----------PRVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhc-----------ceeEEeecccccc---------------ccHhhccccCcccc
Confidence 456677772 244557777776552 2466777765421 12223344444443
Q ss_pred hhHHHH-HHHHHHHhc--CCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCccccccCC
Q 022071 115 LSAKTK-IYFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEA 191 (303)
Q Consensus 115 Lt~Kt~-~~~~wa~~~--~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~ 191 (303)
-..|+. +.++++.++ -++||++-+-||+|||...|++++....-+..+|+|.-- --| .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCc-c
Confidence 344443 456666664 489999999999999999999999877777899999310 001 1
Q ss_pred CCCCCCCc-ccCceeecHHHHHHHHHhccccCCC---CCChHHHHHHHh
Q 022071 192 GNRYFRHA-TGQLYAISKDLAAYISINQHVLHKY---ANEDVSLGSWFI 236 (303)
Q Consensus 192 ~~~Yp~y~-~G~gYilS~~l~~~i~~~~~~~~~~---~~EDV~iG~~l~ 236 (303)
+ . | .|.||+||+.++..|-.+-.-...+ .-.|+.+|.|+.
T Consensus 139 ~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 139 G-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred C-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 1 2 5 4899999999999998765443332 467899999994
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.21 E-value=0.12 Score=45.10 Aligned_cols=185 Identities=13% Similarity=-0.007 Sum_probs=83.4
Q ss_pred eEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCe--eeccccccc
Q 022071 35 LMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF--MRLDHVEGY 112 (303)
Q Consensus 35 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Di--l~~d~~D~Y 112 (303)
.+.|+|.+.-....-++.|+.--... ...+.++++...+. +...+.+++-.+.+... ..+.. -
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~---~ 66 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRR---P 66 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE-----
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeec---C
Confidence 35566666443334444444443221 13466666664443 22334454445556542 22211 1
Q ss_pred cch--hHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhh-CCCCCeeEEEeecCc---ccc--c--CCCcccc
Q 022071 113 LEL--SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH-RSKPRVYIGCMKSGP---VLN--Q--KGVRYHE 182 (303)
Q Consensus 113 ~nL--t~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~-~~~~~ly~G~~~~~p---v~r--~--~~~Kw~~ 182 (303)
.|. +.|.. .++++.+..+.+|++.+|||+.+.++.|..++... .+.-.+..|.....+ ... . ....|+.
T Consensus 67 ~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (228)
T PF13641_consen 67 RNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHL 145 (228)
T ss_dssp --HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETT
T ss_pred CCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhh
Confidence 222 23443 44666665679999999999999999988888776 332333333332111 000 0 0001111
Q ss_pred CccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 183 PEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 183 p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
.. ......... .++.|++.++.+++++.+-.-.. ....||..++.-+...|..
T Consensus 146 ~~-~~~~~~~~~--~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 146 RF-RSGRRALGV--AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp TS--TT-B------S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred hh-hhhhcccce--eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 00 011111111 34679999999999988853222 3446999999998766544
No 12
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.00 E-value=0.24 Score=47.63 Aligned_cols=190 Identities=15% Similarity=0.080 Sum_probs=97.0
Q ss_pred eeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCC--eeecccccc
Q 022071 34 YLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEG 111 (303)
Q Consensus 34 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--il~~d~~D~ 111 (303)
+.+-|+|.+.-....-.+.|+ +...+. -..+.++++...+++ + ..+.+++=.+.|.+ +..+.-.+
T Consensus 41 p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~D--~-t~~iv~~~~~~~p~~~i~~v~~~~- 107 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPDD--P-ALAVVRRLRADFPDADIDLVIDAR- 107 (373)
T ss_pred CCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCCC--c-HHHHHHHHHHhCCCCceEEEECCC-
Confidence 445555555433333344553 333332 224777777665542 2 22333332455665 32221111
Q ss_pred ccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCe-eEEEeecCcccccCCC--------cccc
Q 022071 112 YLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGV--------RYHE 182 (303)
Q Consensus 112 Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~--------Kw~~ 182 (303)
-.....|.-+..+ +.+..+.+|++.+|+|+.+.++.|...+.... .+++ .+++.....+...... -++.
T Consensus 108 ~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (373)
T TIGR03472 108 RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFL 185 (373)
T ss_pred CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhh
Confidence 1122356655544 44556899999999999999999988887663 2221 2222211000000000 0111
Q ss_pred CccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 183 PEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 183 p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
|.... ... ..-+.++.|+.+++.+++.+.+---.. +.....||+.+|.-+...|.+
T Consensus 186 ~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 186 PSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred HHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCe
Confidence 11000 000 011345789999999999988753222 122236999999999766544
No 13
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.97 E-value=0.19 Score=43.71 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=52.8
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeec-----cccccc
Q 022071 38 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRL-----DHVEGY 112 (303)
Q Consensus 38 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~-----d~~D~Y 112 (303)
|.|.|-+++.+||+.+.+..... ++.+.|+-|..... +.. .+....+..-... .+.-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 45677788999999998887754 34566776665421 111 0111112111111 111111
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEecCceeecHH
Q 022071 113 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 147 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~ 147 (303)
--=.+-.+..++-+++. +.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11244556667766653 67899999999999865
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.34 E-value=1.3 Score=38.04 Aligned_cols=135 Identities=17% Similarity=0.121 Sum_probs=78.8
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCC--eeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 149 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--il~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L 149 (303)
.+.+++|...+.+ . ..+.+++-.+.|.. +..+...... ....|.-. +..+.+..+.+|++.+|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~d--~-t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD--P-AIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc--h-HHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3677777766542 2 23444444455542 2222211111 12234332 345556668999999999999998888
Q ss_pred HHHHhhhCCCCCeeEEEeecCcccccCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChH
Q 022071 150 GQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDV 229 (303)
Q Consensus 150 ~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV 229 (303)
...+.... .+. +|.+.+ .++.|++.++.+++.+.+.--.. +..+..||.
T Consensus 105 ~~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 87776542 122 122110 03668999999999987743221 222347999
Q ss_pred HHHHHHhhCCCeE
Q 022071 230 SLGSWFIGLDVEH 242 (303)
Q Consensus 230 ~iG~~l~~l~v~~ 242 (303)
.++.-+...|.+.
T Consensus 154 ~l~~rl~~~G~~i 166 (196)
T cd02520 154 FLGKLIWRLGYRV 166 (196)
T ss_pred HHHHHHHHcCCeE
Confidence 9999886665443
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.01 E-value=0.78 Score=39.61 Aligned_cols=165 Identities=15% Similarity=-0.022 Sum_probs=83.1
Q ss_pred EEEEEEeecCCCCCchhhHHHHHHHhh--cCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHH
Q 022071 73 IIMRFVIGHSATSGGILDRAIEAEDRK--HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 150 (303)
Q Consensus 73 v~~~FvlG~~~~~~~~~~~~l~~E~~~--~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~ 150 (303)
+.++.|-..+.+ ...+.+. +... +..+..+...+. .|. .|. ..++++.+..+.+|++.+|+|..+.++.|.
T Consensus 29 ~eiivvdd~s~d---~t~~~~~-~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILE-FAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHH-HHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 566666655432 2233343 2222 234555544431 222 222 334556666689999999999999998888
Q ss_pred HHHhhhCC-CCCeeEEEeecCcc---ccc-CCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCC
Q 022071 151 QTLVRHRS-KPRVYIGCMKSGPV---LNQ-KGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYA 225 (303)
Q Consensus 151 ~~L~~~~~-~~~ly~G~~~~~pv---~r~-~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~ 225 (303)
..+..... ...++.|.....+. ... ....+..............++..+.|+++++++++.+.+---... ....
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-cccc
Confidence 88875432 23344454321110 000 000000000000000122345556799999999999887443222 2234
Q ss_pred CChHHHHHHH--hhC-CCeEecC
Q 022071 226 NEDVSLGSWF--IGL-DVEHIDD 245 (303)
Q Consensus 226 ~EDV~iG~~l--~~l-~v~~~~~ 245 (303)
.||..++.-+ .+. .+....+
T Consensus 181 ~eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 181 SGDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred cCCHHHHHHHHHhCCCCEEEeeC
Confidence 6777766544 344 4444433
No 16
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.86 E-value=1.5 Score=42.29 Aligned_cols=160 Identities=17% Similarity=0.094 Sum_probs=81.4
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcC---CeeeccccccccchhHHHH---HHHHHHHh-cCCcceEEEecCceee
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHG---DFMRLDHVEGYLELSAKTK---IYFATAVS-LWDADFYVKVDDDVHV 144 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~---Dil~~d~~D~Y~nLt~Kt~---~~~~wa~~-~~~~~f~lK~DDD~fV 144 (303)
.+.+++|-..+.+ + ..+.+++-.+.+. .+..+...+.-.+-..|.. .+++.+.+ ..+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4677777766543 2 2222322223343 3444432221112234533 34444443 2348999999999999
Q ss_pred cHHHHHHHHhhhCCCC-CeeEEEeecCcccccCCCcccc-----------CccccccCCCCCCCCCcccCceeecHHHHH
Q 022071 145 NIATLGQTLVRHRSKP-RVYIGCMKSGPVLNQKGVRYHE-----------PEYWKFGEAGNRYFRHATGQLYAISKDLAA 212 (303)
Q Consensus 145 n~~~L~~~L~~~~~~~-~ly~G~~~~~pv~r~~~~Kw~~-----------p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~ 212 (303)
.++.|.+.+......+ .+..|...... .....+... |-.+. .++ ......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-NDP-RRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cCC-CccceeecceEEEEEHHHHH
Confidence 9999888887653322 22222221100 000000000 00010 001 11233467999999999998
Q ss_pred HHHHhccccCCCCCChHHHHHHHhhCC
Q 022071 213 YISINQHVLHKYANEDVSLGSWFIGLD 239 (303)
Q Consensus 213 ~i~~~~~~~~~~~~EDV~iG~~l~~l~ 239 (303)
.+---.... ....||+.++.-+...|
T Consensus 223 ~vGGf~~~~-~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAAIR-GALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHHHh-hCcccHHHHHHHHHHcC
Confidence 874322211 22489999999887554
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.78 E-value=2.4 Score=37.07 Aligned_cols=161 Identities=11% Similarity=-0.037 Sum_probs=81.6
Q ss_pred CcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHH
Q 022071 71 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 150 (303)
Q Consensus 71 ~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~ 150 (303)
..+.++.+-+.+.+ .....++...+.+..+..+..... .. -.+++.+.+..+.+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~~~--~~----~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNPKR--IQ----SAGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCCCC--Cc----hHHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 35667766655542 233444444444333433322211 11 1346666665689999999999999988888
Q ss_pred HHHhhhCCCC-CeeEEEeec---Ccccc----cCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccC
Q 022071 151 QTLVRHRSKP-RVYIGCMKS---GPVLN----QKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLH 222 (303)
Q Consensus 151 ~~L~~~~~~~-~ly~G~~~~---~pv~r----~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~ 222 (303)
..+....... .+..|.... .+... .....+....... .......-.++.|++.++++++...+.-....
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAY-RGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccc-cccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886543322 333344321 11100 0000000000000 00000101145688889999998776432221
Q ss_pred CCCCChHHHHHHHhhCCCeEe
Q 022071 223 KYANEDVSLGSWFIGLDVEHI 243 (303)
Q Consensus 223 ~~~~EDV~iG~~l~~l~v~~~ 243 (303)
....||..++.-+...|.+..
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred cCccchhHHHHHHHHcCcEEE
Confidence 234799999877766655444
No 18
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.06 E-value=0.093 Score=45.28 Aligned_cols=121 Identities=16% Similarity=0.068 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcc--cc-------Cccc
Q 022071 116 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY--HE-------PEYW 186 (303)
Q Consensus 116 t~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw--~~-------p~~~ 186 (303)
..|+-.+.....+..+.++++..|+|+.|+++-|...+.......--.+.++.-. ....+-| .+ +.-+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRG---VPARGFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccc---cCCcCHHHHHHHHHHhHHHHHH
Confidence 4566655555443368999999999999999999998877643121122222110 0011111 01 1101
Q ss_pred cccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeEec
Q 022071 187 KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEHID 244 (303)
Q Consensus 187 ~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~~~ 244 (303)
.. -...+++.|+.+++.+++++.+--- ..+..+--||..+|..+...|.+.+-
T Consensus 93 ~a----~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~ 145 (175)
T PF13506_consen 93 QA----LGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVL 145 (175)
T ss_pred HH----hcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEE
Confidence 10 1235678999999999999876321 22333558999999999877777653
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.71 E-value=5.6 Score=36.60 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=67.2
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEE-eec--C-cc-cccC------------CCccccC-
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC-MKS--G-PV-LNQK------------GVRYHEP- 183 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~-~~~--~-pv-~r~~------------~~Kw~~p- 183 (303)
+.+.+.+....+|++.+|+|+.+.++-|..++......+...+|. +.. + .. .... ...|...
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 344444445789999999999999888888776654333333322 210 0 00 0000 0011111
Q ss_pred ccc-cccC-CCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHH--hhCCCeEecC
Q 022071 184 EYW-KFGE-AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWF--IGLDVEHIDD 245 (303)
Q Consensus 184 ~~~-~~~~-~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l--~~l~v~~~~~ 245 (303)
... .... +.....+++.|+++++++++...+-.-...+..+..||+-+..=+ .|..+..+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~ 219 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence 000 0000 012334567899999999999988554444444557999876544 4554444433
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.40 E-value=5.6 Score=38.51 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc
Q 022071 33 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 112 (303)
Q Consensus 33 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y 112 (303)
.+.+-|+|.+.-.. +.|++|-.+-.. . ......++.|-..+. +...+.+++..+++..+..++..+
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~-- 118 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE-- 118 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC--
Confidence 44566666664433 334444433210 0 012344444433332 234444555556666665554333
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccC----ccc--
Q 022071 113 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEP----EYW-- 186 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p----~~~-- 186 (303)
|.. |. ..++.+.+..+.+|++..|+|..+.++.|.+.+......+++ |.+...+..++.. .+... ++.
T Consensus 119 -n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~~ 192 (420)
T PRK11204 119 -NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSSI 192 (420)
T ss_pred -CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHHh
Confidence 222 33 345566666689999999999999999988888766333332 3322212111111 01000 000
Q ss_pred ----cccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC--CeEecC
Q 022071 187 ----KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 245 (303)
Q Consensus 187 ----~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~--v~~~~~ 245 (303)
.........+...+|.+.+++++++..+.-- -+....||+-++.-+...| +...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 193 IGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred hhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHcCCeEEeccc
Confidence 0000000112235788899999998776321 1223479999998886544 444443
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.20 E-value=2 Score=34.43 Aligned_cols=135 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
.+.+++|-..+. +...+.+++-.+....+..+...+.. .+ -..+..+.+....+|++.+|||.++.++.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~----~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GF----SAARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HH----HHHHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-cc----cccccccccccceeEEEEeCCCceEcHHHHHH
Confidence 455666655442 23444444333324445554444433 22 23333444445666999999999999987777
Q ss_pred HHhhhCC-CCCeeEEEee--cC--cccccCCC--ccccCccccccCCCCCCCCCcccCceeecHHHHHHH
Q 022071 152 TLVRHRS-KPRVYIGCMK--SG--PVLNQKGV--RYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYI 214 (303)
Q Consensus 152 ~L~~~~~-~~~ly~G~~~--~~--pv~r~~~~--Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i 214 (303)
++..... ...+.+|... .. ........ .+..............-..++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 7766543 3445555532 11 11001000 111110000000112334467889999999988764
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=92.50 E-value=5.8 Score=34.99 Aligned_cols=186 Identities=14% Similarity=0.049 Sum_probs=87.9
Q ss_pred ceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc
Q 022071 33 RYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 112 (303)
Q Consensus 33 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y 112 (303)
...+-|+|.+.-....-...|+.-..+.. ....+.++++...+. + ...+.+.+-.+. .+..+...+..
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~--d-~t~~~~~~~~~~--~v~~i~~~~~~ 95 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST--D-GTAEIAREYADK--GVKLLRFPERR 95 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC--c-cHHHHHHHHhhC--cEEEEEcCCCC
Confidence 33455666664433334555555554331 111255666654433 2 222333222222 23333222221
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCC-CCCeeEEEeec-CcccccCCCc--cccCccccc
Q 022071 113 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS-KPRVYIGCMKS-GPVLNQKGVR--YHEPEYWKF 188 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~-~~~ly~G~~~~-~pv~r~~~~K--w~~p~~~~~ 188 (303)
.|. ..+..+.+....+|++.+|+|+.+.++-|.+.+..... .-.+..|.... .+........ |.....+..
T Consensus 96 ----g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (251)
T cd06439 96 ----GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKR 170 (251)
T ss_pred ----ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHH
Confidence 132 33455555556799999999999998888888877642 22333333321 1100000000 100000000
Q ss_pred cCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 189 GEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 189 ~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
-......+..+.|+++++.+++.. ..-.....||..++.-+...|..
T Consensus 171 ~~~~~~~~~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~ 217 (251)
T cd06439 171 AESRLGSTVGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYR 217 (251)
T ss_pred HHHhcCCeeeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCe
Confidence 000011233466777878877766 11122347999998888766644
No 23
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.19 E-value=5.2 Score=32.20 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=54.3
Q ss_pred HhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCe-eEEEeecCcccccCCCccccCccccccCCCCCCCCCcccCcee
Q 022071 127 VSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYA 205 (303)
Q Consensus 127 ~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYi 205 (303)
.+..+.+|++.+|||..+.++.+...+......+.+ .++.. +.|++.+
T Consensus 70 ~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~ 118 (166)
T cd04186 70 IREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLL 118 (166)
T ss_pred HhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEe
Confidence 333489999999999999998888887654322221 11110 5688899
Q ss_pred ecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 206 ISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 206 lS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
+++++++.+..-...... ..||..+..-+...|.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 119 VRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYR 153 (166)
T ss_pred eeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCe
Confidence 999988876432222222 57999888776544443
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.95 E-value=6.8 Score=33.87 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=66.7
Q ss_pred HHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCe-eE-EEee--c-Ccc---cccCC--CccccCc-cccccCC
Q 022071 123 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YI-GCMK--S-GPV---LNQKG--VRYHEPE-YWKFGEA 191 (303)
Q Consensus 123 ~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l-y~-G~~~--~-~pv---~r~~~--~Kw~~p~-~~~~~~~ 191 (303)
+..+.+..+.+|++.+|+|.++.++.|..++......+.+ .+ |... . ... .+... ...+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 3445554589999999999999999888888766432332 12 2111 1 100 00000 0000000 000 0
Q ss_pred CCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC--CeEecCCC
Q 022071 192 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDRR 247 (303)
Q Consensus 192 ~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~--v~~~~~~~ 247 (303)
......++.|++.++++++++.+..-. ..+..||..++.-+...+ +..+++..
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~ 207 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPL 207 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcc
Confidence 011244567999999999998874321 234489999998886655 44444433
No 25
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=91.38 E-value=3.3 Score=33.55 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=67.2
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCC-eeeccccccccchh
Q 022071 38 VGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELS 116 (303)
Q Consensus 38 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D-il~~d~~D~Y~nLt 116 (303)
|.|.+-++..+||+.+++..... ++.+.|+-|-.... .....+......+.. ....+..-+----.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~ 68 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCF 68 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHH
Confidence 45677788899999999965543 35566777665421 111112111110000 00011111222223
Q ss_pred HHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCccccccCCCCCCC
Q 022071 117 AKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYF 196 (303)
Q Consensus 117 ~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp 196 (303)
+-.+..++-+.+ .+.++.+-..||+.+..+
T Consensus 69 lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------- 98 (128)
T cd06532 69 LSHYKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------
Confidence 444555555554 256889999999988876
Q ss_pred CCcccCceeecHHHHHHHHHhccc
Q 022071 197 RHATGQLYAISKDLAAYISINQHV 220 (303)
Q Consensus 197 ~y~~G~gYilS~~l~~~i~~~~~~ 220 (303)
+..+|++|+..|++|......
T Consensus 99 ---~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ---GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ---CceEEEeCHHHHHHHHHhCCC
Confidence 356799999999999886544
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.16 E-value=7 Score=31.12 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCC--eeEEEeec---C-cccccC-CCccccCccccc-cCCC
Q 022071 121 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMKS---G-PVLNQK-GVRYHEPEYWKF-GEAG 192 (303)
Q Consensus 121 ~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~--ly~G~~~~---~-pv~r~~-~~Kw~~p~~~~~-~~~~ 192 (303)
..++++.+..+.+|++.+|+|..+.+..|..++......+. +..|.... . ...... ..++........ +...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 44555566569999999999999998888877454433232 22233211 1 111000 001111100000 0001
Q ss_pred CCCCCCcccCceeecHHHHHHHH
Q 022071 193 NRYFRHATGQLYAISKDLAAYIS 215 (303)
Q Consensus 193 ~~Yp~y~~G~gYilS~~l~~~i~ 215 (303)
..+...+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23345678999999999988764
No 27
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=89.65 E-value=3.3 Score=34.64 Aligned_cols=133 Identities=9% Similarity=0.050 Sum_probs=72.3
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
.+.++.|-+.+.+ . ....++...+++..+..+.....+. | -.+++.+.+....+|++.+|+|....++.|..
T Consensus 29 ~~eiivvdd~s~d--~-t~~~~~~~~~~~~~i~~i~~~~n~G----~-~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD--R-TLEILRELAARDPRVKVIRLSRNFG----Q-QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc--c-HHHHHHHHHhhCCCEEEEEecCCCC----c-HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4566666655442 2 2333444444555555555433322 2 23444455555679999999999999888888
Q ss_pred HHhhhCCCCCeeEEEeec--CcccccCCCcccc-CccccccCCCCCCCCCcccCceeecHHHHHHHHH
Q 022071 152 TLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHE-PEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 216 (303)
Q Consensus 152 ~L~~~~~~~~ly~G~~~~--~pv~r~~~~Kw~~-p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~ 216 (303)
.+........+.+|.... .+....-..+.+. ..... .....+...|+.+++++++++.+..
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL----SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH----cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 887654445566665321 1110000001100 00000 1133345678889999999998764
No 28
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.16 E-value=13 Score=31.54 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhC-CCCCeeEEEeecCcccccCCCccccCccccccCCCCCCCC
Q 022071 119 TKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR-SKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFR 197 (303)
Q Consensus 119 t~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~ 197 (303)
.-.+++++. ..+.+|++..|||..+.++.|...+.... +.-.++.|... .. .+
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------------------~~--~~----- 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------------------DP--DG----- 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------------------cC--CC-----
Confidence 345566665 56889999999999999888777776553 11112211110 00 01
Q ss_pred CcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 022071 198 HATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 239 (303)
Q Consensus 198 y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 239 (303)
.+++.++.+++++.+--..... ....||+.++.-+...|
T Consensus 122 --~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 --SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred --ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcC
Confidence 3456789999988774222222 23479999988876544
No 29
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=87.19 E-value=0.92 Score=41.53 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=42.1
Q ss_pred ccCceeecHHHHHHHHHhcc----ccCCCCCChHHHHHHHhhCCCeEecCCCcccCC
Q 022071 200 TGQLYAISKDLAAYISINQH----VLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGT 252 (303)
Q Consensus 200 ~G~gYilS~~l~~~i~~~~~----~~~~~~~EDV~iG~~l~~l~v~~~~~~~f~~~~ 252 (303)
+|+|++||..+|+.|.+... ..+.+.--|--|..|++.++|.....++|+..+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~D 68 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMD 68 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEe
Confidence 79999999999999987532 234445689999999998988877778887643
No 30
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=86.47 E-value=2.4 Score=35.99 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=65.8
Q ss_pred eEEEecCceeecHHHHHHHHhhhCCCCCeeEE--EeecCcccccCCCccccCcc-c-----cccCCCCCCCCCcccCcee
Q 022071 134 FYVKVDDDVHVNIATLGQTLVRHRSKPRVYIG--CMKSGPVLNQKGVRYHEPEY-W-----KFGEAGNRYFRHATGQLYA 205 (303)
Q Consensus 134 f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G--~~~~~pv~r~~~~Kw~~p~~-~-----~~~~~~~~Yp~y~~G~gYi 205 (303)
||+-+|+|+.+.++-|.+.+.... .+.+-++ .....+ ....-.++...+. + .........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688999999999998888877665 2332222 221100 0000011111110 0 0000112346668899999
Q ss_pred ecHHHHHHHHHhccccCCCCCChHHHHHHHh--hCCCeEecCCCcccCCC
Q 022071 206 ISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCCGTP 253 (303)
Q Consensus 206 lS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~--~l~v~~~~~~~f~~~~~ 253 (303)
+++++++.+.--. -.....||..++.=+. +..+..+++....+..|
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 9999999875322 2344579999988775 55566777664544444
No 31
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.45 E-value=35 Score=33.55 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=84.6
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
++.+++|...+. +...+.+++..+++..+......+ |.. |. ..++.+.+..+.+|++..|.|..+.++.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 466665554443 223444554455666554443222 222 32 3556666666899999999999999999988
Q ss_pred HHhhhCCCCCeeEEEeecCcccccCC---CccccCcc-----------ccccCCCCCCCCCcccCceeecHHHHHHHHHh
Q 022071 152 TLVRHRSKPRVYIGCMKSGPVLNQKG---VRYHEPEY-----------WKFGEAGNRYFRHATGQLYAISKDLAAYISIN 217 (303)
Q Consensus 152 ~L~~~~~~~~ly~G~~~~~pv~r~~~---~Kw~~p~~-----------~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~ 217 (303)
.+......+++ |.+...+..++.. .+....+. ..+ +. +..++|.+.++.+++++.+--.
T Consensus 176 lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---g~--~~~~sG~~~~~rr~al~~vGg~ 248 (444)
T PRK14583 176 LVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVY---GQ--VFTVSGVVAAFRRRALADVGYW 248 (444)
T ss_pred HHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHh---CC--ceEecCceeEEEHHHHHHcCCC
Confidence 87655322332 3332222221111 11111010 000 11 1225788889999998776322
Q ss_pred ccccCCCCCChHHHHHHHhhCC--CeEecC
Q 022071 218 QHVLHKYANEDVSLGSWFIGLD--VEHIDD 245 (303)
Q Consensus 218 ~~~~~~~~~EDV~iG~~l~~l~--v~~~~~ 245 (303)
. +..-.||.-+|.-+...| +...++
T Consensus 249 ~---~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 249 S---PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred C---CCcccccHHHHHHHHHcCCeEEEeec
Confidence 2 223479999999886555 444443
No 32
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=85.22 E-value=24 Score=30.57 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=67.7
Q ss_pred cCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHH---hhhCCCCCe-eEEEe-ec--Ccc
Q 022071 100 HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTL---VRHRSKPRV-YIGCM-KS--GPV 172 (303)
Q Consensus 100 ~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L---~~~~~~~~l-y~G~~-~~--~pv 172 (303)
...+..+...++.. ...=.-.+++.+... +++|++..|+|+.+.++.|..++ ......+.+ .+|.. .. ...
T Consensus 46 ~~~i~~i~~~~n~G-~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENLG-IAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCcee-hHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 34444444333222 333333455554432 78999999999999999888885 222222332 22332 11 100
Q ss_pred cc--cCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 173 LN--QKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 173 ~r--~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
.. .....+......... ....-..++.|++.++++++++.+.--...+ .+..||+.++.-+...|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGE-EGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred eccceeccCccceeccccc-CCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCc
Confidence 00 000000000000000 0011123455778899999988874322222 2346899998888655533
No 33
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.57 E-value=23 Score=29.78 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=60.3
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCC--CeeEEEeec--CcccccCCCccccCc---c-ccccCCCC
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP--RVYIGCMKS--GPVLNQKGVRYHEPE---Y-WKFGEAGN 193 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~--~ly~G~~~~--~pv~r~~~~Kw~~p~---~-~~~~~~~~ 193 (303)
.++.+.+..+.+|++..|+|.++.++.|...+......+ .++.|.+.. .... ....+. .|. . ..+...
T Consensus 71 a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-- 146 (201)
T cd04195 71 ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFARR-- 146 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHhcc--
Confidence 345555556899999999999999999888887653322 344444321 1000 000000 110 0 000000
Q ss_pred CCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhC--CCeEec
Q 022071 194 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHID 244 (303)
Q Consensus 194 ~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l--~v~~~~ 244 (303)
.- + ..|++.++.+.++..+-. .-+....||..+..-+... .+.+++
T Consensus 147 ~~-~-~~~~~~~~rr~~~~~~g~---~~~~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 147 RS-P-FNHPTVMFRKSKVLAVGG---YQDLPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred CC-C-CCChHHhhhHHHHHHcCC---cCCCCCchHHHHHHHHHHcCCceeccc
Confidence 11 1 245667777777665422 1122568999998887544 444443
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.29 E-value=24 Score=29.68 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhC--CCCCeeEEEee---cCcccccCCCccccCccccccCCCCCCC
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK---SGPVLNQKGVRYHEPEYWKFGEAGNRYF 196 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~---~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp 196 (303)
.++.+.+....+|++..|+|..+.++.|...+.... +...+..+... ....... .++.+. |.. ...+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~-~~~---~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSE---PFFKPD-WSP---DLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEec---cccCCC-CCH---HHhhh
Confidence 445555555789999999999999998888887652 22233322211 0000000 111110 110 00111
Q ss_pred CCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 022071 197 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEH 242 (303)
Q Consensus 197 ~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~ 242 (303)
.-+.|++-+++++++..+-.-... ....||.-++.-+...|.+.
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~ 190 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRI 190 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceE
Confidence 112355567888888776432111 23479998888776555443
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.74 E-value=25 Score=29.61 Aligned_cols=171 Identities=13% Similarity=0.014 Sum_probs=84.9
Q ss_pred HHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcC-CeeeccccccccchhHHHHHHHHHHHhc
Q 022071 51 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVSL 129 (303)
Q Consensus 51 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~-Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~ 129 (303)
+.|.++..+... . ....+.+++|-..+.+ .....+++-..++. .+.......+.. . ...+..+...
T Consensus 11 ~~l~~~l~sl~~----q-~~~~~eiiVvddgS~d---~t~~~~~~~~~~~~~~~~~~~~~~~~G-~----~~~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILA----Q-TYKNDELIISDDGSTD---GTVEIIKEYIDKDPFIIILIRNGKNLG-V----ARNFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHh----C-cCCCeEEEEEeCCCCC---CcHHHHHHHHhcCCceEEEEeCCCCcc-H----HHHHHHHHHh
Confidence 456666655421 0 1125667777654432 23333443344443 233333333222 2 2223333455
Q ss_pred CCcceEEEecCceeecHHHHHHHHhh-hCC-CCCeeEEEee----cCcccccCCCccccCc-cccccCCCCCCCCCcccC
Q 022071 130 WDADFYVKVDDDVHVNIATLGQTLVR-HRS-KPRVYIGCMK----SGPVLNQKGVRYHEPE-YWKFGEAGNRYFRHATGQ 202 (303)
Q Consensus 130 ~~~~f~lK~DDD~fVn~~~L~~~L~~-~~~-~~~ly~G~~~----~~pv~r~~~~Kw~~p~-~~~~~~~~~~Yp~y~~G~ 202 (303)
.+.+|++..|+|..+.++.|...+.. ... ...++.|.+. .+.............. .... ..........|+
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 155 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF--NNLLFQNVVTGC 155 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH--HHHHHhCccCCc
Confidence 68999999999999999888888876 222 2233333321 1111111000000000 0000 001122345789
Q ss_pred ceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhC
Q 022071 203 LYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL 238 (303)
Q Consensus 203 gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l 238 (303)
+.++.+++++.+....... ...||.++...+...
T Consensus 156 ~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~ 189 (214)
T cd04196 156 TMAFNRELLELALPFPDAD--VIMHDWWLALLASAF 189 (214)
T ss_pred eeeEEHHHHHhhccccccc--cccchHHHHHHHHHc
Confidence 9999999998875432222 457898887766543
No 36
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.07 E-value=33 Score=29.74 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=62.4
Q ss_pred HHHHHHhc--CCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcccc------Ccccc-ccCC-
Q 022071 122 YFATAVSL--WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE------PEYWK-FGEA- 191 (303)
Q Consensus 122 ~~~wa~~~--~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~------p~~~~-~~~~- 191 (303)
.+.++.+. .+.+|++..|+|+.+.++.|...+.... .+.+ |.+......++....++. ...+. .+.+
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666653 2479999999999999999998887653 2321 222110001111111110 00000 0000
Q ss_pred -CCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 192 -GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 192 -~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
...-..++.|++.+++++++..+---.. .+..||+-++.=+...|..
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcE
Confidence 0000124678889999999988743222 2348999998877655544
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.55 E-value=42 Score=32.23 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=105.2
Q ss_pred eeEEEEEECCCCCH-HHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc
Q 022071 34 YLMVVGINTAFSSR-KRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY 112 (303)
Q Consensus 34 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y 112 (303)
+.+-|+|.+--... -..+.++..=..+ -.++.++.|...+. +..-+.+.+-.+++++.+.....
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--- 118 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--- 118 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec---
Confidence 55566666654444 2333333333222 22356666665443 33445555556666534443321
Q ss_pred cchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCe-eEEEee--cC-----cccccCCCccccCc
Q 022071 113 LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMK--SG-----PVLNQKGVRYHEPE 184 (303)
Q Consensus 113 ~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~--~~-----pv~r~~~~Kw~~p~ 184 (303)
.+-...-...+.++....+.++++..|-|+.+.++.|.+.+......+.. ..|... .+ ...+-....+....
T Consensus 119 ~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (439)
T COG1215 119 EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAF 198 (439)
T ss_pred cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhH
Confidence 01122224566677766679999999999999999999999877543332 333221 11 00000000000000
Q ss_pred c--ccccCCCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC--CeEecCC
Q 022071 185 Y--WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDDR 246 (303)
Q Consensus 185 ~--~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~--v~~~~~~ 246 (303)
. +... ........+.|...++.+++++.+. ......-.||..++..+...| +..+++.
T Consensus 199 ~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 199 YFRLRAA-SKGGLISFLSGSSSAFRRSALEEVG---GWLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhC---CCCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 0 0000 1123466789999999999998886 223334479999999997554 4455544
No 38
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.15 E-value=30 Score=28.60 Aligned_cols=115 Identities=12% Similarity=-0.063 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhC--CCCCeeEEEee--cCcccccCCCccccCccccccCCCCCCC
Q 022071 121 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHR--SKPRVYIGCMK--SGPVLNQKGVRYHEPEYWKFGEAGNRYF 196 (303)
Q Consensus 121 ~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~--~~~~ly~G~~~--~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp 196 (303)
..++.+.+..+.+|++.+|+|..+.++.+...+.... +...+..|... .+... ....+...+. .. ......
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~ 139 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRRPPPF-LD---KFLLYG 139 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCCCcch-hh---hHHhhc
Confidence 4455566666889999999999999999998874332 23344555432 11100 0000100000 00 011223
Q ss_pred CCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCeE
Q 022071 197 RHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVEH 242 (303)
Q Consensus 197 ~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~~ 242 (303)
.+..|++.++++++.+.+..-...+ ...||..+..-+...+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 140 MPICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred CcccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCce
Confidence 4466888899999998874322112 2358888777665555443
No 39
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=79.68 E-value=52 Score=31.00 Aligned_cols=134 Identities=7% Similarity=0.030 Sum_probs=69.1
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCC-eeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD-FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 150 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D-il~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~ 150 (303)
.+.+++|-..+.+ . ..+.+++-.+.+++ ++......++. |. .+++.+.++.+.+|++.+|.|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D--~-T~~il~~~~~~~~~~v~~i~~~~n~G----~~-~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD--N-SAEMLVEAAQAPDSHIVAILLNRNYG----QH-SAIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC--c-HHHHHHHHHhhcCCcEEEEEeCCCCC----HH-HHHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 4678888766543 2 22333333334443 44333333332 11 123334444578999999999999999999
Q ss_pred HHHhhhCCCCCeeEEEeec--CcccccCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHH
Q 022071 151 QTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISI 216 (303)
Q Consensus 151 ~~L~~~~~~~~ly~G~~~~--~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~ 216 (303)
++++.......+..|.... .+..+.-.++.+.---..+ .+..++.+.+ +.-++++++++.+..
T Consensus 110 ~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~-gfr~~~r~~~~~l~~ 174 (325)
T PRK10714 110 RLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGC-MLRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCc-CeEEEcHHHHHHHHH
Confidence 8888764333444343221 2222222222111000001 1223443332 234899999999854
No 40
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=76.49 E-value=62 Score=29.63 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=90.9
Q ss_pred cCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCe-e-eccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHH
Q 022071 70 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-M-RLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 147 (303)
Q Consensus 70 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Di-l-~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~ 147 (303)
...+.+++|-+.++ ......|.+-.+.++-+ + ..+.....-+.+ .+.+-+.+....+|++.+|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34677777766554 23445666666666655 2 222222122333 233344445589999999999999999
Q ss_pred HHHHHHh---hhCCC-CCeeEEE-ee-c--Cc--ccccCCCcccc--CccccccCCCCCCC-CCcccCceeecHHHHHHH
Q 022071 148 TLGQTLV---RHRSK-PRVYIGC-MK-S--GP--VLNQKGVRYHE--PEYWKFGEAGNRYF-RHATGQLYAISKDLAAYI 214 (303)
Q Consensus 148 ~L~~~L~---~~~~~-~~ly~G~-~~-~--~p--v~r~~~~Kw~~--p~~~~~~~~~~~Yp-~y~~G~gYilS~~l~~~i 214 (303)
.|...+. ..... ..++++. .. . .. ........|.. -+... ....+.+. ....|+..+++++.-..+
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999888 33322 2333332 21 1 10 10000001110 00000 00011211 223569999999998888
Q ss_pred HHhccccCCCCCChHHHHHHHhhCCCeE
Q 022071 215 SINQHVLHKYANEDVSLGSWFIGLDVEH 242 (303)
Q Consensus 215 ~~~~~~~~~~~~EDV~iG~~l~~l~v~~ 242 (303)
--.-..+..+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6655666667899999988887666544
No 41
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=76.38 E-value=42 Score=27.60 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=58.1
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCccccccCCCCCCCCCccc
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATG 201 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G 201 (303)
.++.+.+....+|++..|+|..+.++-|.+.+....+ .....|.... .... .-.....|
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~~------------~~~~--------~~~~~~~~ 128 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRVL------------LNEK--------LTERGIRG 128 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEecceee------------cccc--------cceeEecc
Confidence 3445555568899999999999998888887766522 2222232110 0000 00022457
Q ss_pred CceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 022071 202 QLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 239 (303)
Q Consensus 202 ~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 239 (303)
+++++.+..+..+..-......+..||+.++.=+...|
T Consensus 129 ~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 129 CNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred ceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 77888888777543332333334579999988776665
No 42
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=74.38 E-value=68 Score=29.14 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHhc-CCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCC---ccccCcccccc
Q 022071 114 ELSAKTKIYFATAVSL-WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---RYHEPEYWKFG 189 (303)
Q Consensus 114 nLt~Kt~~~~~wa~~~-~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---Kw~~p~~~~~~ 189 (303)
|.-.|+-..-...... .+.+|++-.|-|+.+.++.|...+......+.+ |-+.......+..+ ++..-+...+.
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--g~vq~~~~~~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--GIIQTAPKLIGAETLFARLQQFANRLYG 154 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--EEEeCCceeECCCCHHHHHHHHHHHHHH
Confidence 3344555544444332 478999999999999999999988766333332 33221000011111 11000000000
Q ss_pred ---CCC----CCCCCCcccCceeecHHHHHHHHHhc-----ccc-CCCCCChHHHHHHHhhCCCe
Q 022071 190 ---EAG----NRYFRHATGQLYAISKDLAAYISINQ-----HVL-HKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 190 ---~~~----~~Yp~y~~G~gYilS~~l~~~i~~~~-----~~~-~~~~~EDV~iG~~l~~l~v~ 241 (303)
..+ ...-.++.|...++.++++..+.... .-+ ...-.||..+|..+...|-+
T Consensus 155 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 155 PVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 000 01123467999999999887753211 111 12348999999998765533
No 43
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=72.74 E-value=39 Score=27.77 Aligned_cols=133 Identities=10% Similarity=0.016 Sum_probs=69.5
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
...++.+-..+.+ .....+..-.+++..+..+...+... .-..+..+.+....+|++..|+|..+.++.|.+
T Consensus 28 ~~eiivvd~~s~d---~~~~~~~~~~~~~~~~~~~~~~~n~G-----~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGSTD---GTAEIARELAARVPRVRVIRLSRNFG-----KGAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCCC---ChHHHHHHHHHhCCCeEEEEccCCCC-----ccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 3455555544432 23444544455565554444444332 123444445545569999999999999999988
Q ss_pred HHhh-hCCCCCeeEEEee--cC----cccccCCCccccCccccccCCCCCCCCCcccCceeecHHHHHHHH
Q 022071 152 TLVR-HRSKPRVYIGCMK--SG----PVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYIS 215 (303)
Q Consensus 152 ~L~~-~~~~~~ly~G~~~--~~----pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~ 215 (303)
++.. ......+..|... .+ +..+. ...+........ -...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRL--LLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHH--HcCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 3344555556532 11 11000 000000000000 0011123356778899999999885
No 44
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=68.64 E-value=1.4e+02 Score=31.64 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCe-eEEEee----cCcccccCCCccccCcc--ccc
Q 022071 116 SAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV-YIGCMK----SGPVLNQKGVRYHEPEY--WKF 188 (303)
Q Consensus 116 t~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l-y~G~~~----~~pv~r~~~~Kw~~p~~--~~~ 188 (303)
-.|.- .++.+.+..+.+|++..|.|+.+.++.|.+.+......+++ .++... ..+..++-......+.+ ..+
T Consensus 214 ~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~ 292 (713)
T TIGR03030 214 HAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFY 292 (713)
T ss_pred CCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHH
Confidence 34533 35666666788999999999999999988887665333443 111110 11111110000001100 000
Q ss_pred cC--CC--CCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCC--eEecCCCcccCCC
Q 022071 189 GE--AG--NRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDV--EHIDDRRLCCGTP 253 (303)
Q Consensus 189 ~~--~~--~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v--~~~~~~~f~~~~~ 253 (303)
+. ++ ..-..++.|++.++.++++..+---. ...-.||..++.-+...|- ...++.......|
T Consensus 293 ~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 293 GLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 00 00 00123567899999999998774221 1223799999998865554 4555554444333
No 45
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=66.79 E-value=85 Score=27.16 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=60.2
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcccc-----Cccccc-----cCC
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE-----PEYWKF-----GEA 191 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~-----p~~~~~-----~~~ 191 (303)
.++.+.+..+.+|++.+|.|+.+.++.|...+... ..+. +|.+.......+....|.. +..+.+ +..
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 34555666689999999999999999988855433 2233 2332211110111111110 000000 000
Q ss_pred CCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC--CeEecC
Q 022071 192 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD--VEHIDD 245 (303)
Q Consensus 192 ~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~--v~~~~~ 245 (303)
.......+.|++-++.++++..+---. .....||+.++.-+...| +..+++
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEecc
Confidence 011111235666678888877763211 123479999988886554 444443
No 46
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=66.10 E-value=28 Score=33.30 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHHHHHhcCCcceEEEecCceeecHH---HHHHHHhhhCCCCCeeEEEeecCcccccCCCcccc---CccccccCCCCCC
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIA---TLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE---PEYWKFGEAGNRY 195 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~---p~~~~~~~~~~~Y 195 (303)
++.|+....++++++-+|||..+.++ -+...|..+...++++ |+.+- .+.+.+..+ |...|+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~---NdnG~~~~~~~~~~~lyr------- 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAW---NDNGKEHFVDDTPSLLYR------- 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEee---ccCCcccccCCCcceEEE-------
Confidence 66666665579999999999999998 4556665555556654 43210 011111110 222222
Q ss_pred CCCcccCceeecHHHHHHH
Q 022071 196 FRHATGQLYAISKDLAAYI 214 (303)
Q Consensus 196 p~y~~G~gYilS~~l~~~i 214 (303)
-.|+.|.|.++.+++-..+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 1356699999999998777
No 47
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=63.57 E-value=87 Score=26.64 Aligned_cols=157 Identities=13% Similarity=-0.004 Sum_probs=78.7
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCe-eeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDF-MRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 150 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Di-l~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~ 150 (303)
.+.++.|-+.+.+ .....+++..+.++.. ..+....... .. .++..+.+....+|++.+|+|..+.++.|.
T Consensus 30 ~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~n~G-~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPKNRG-KG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEcccCCC-cH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 4667777665542 2334455555556654 2222222221 11 233344444467999999999999999999
Q ss_pred HHHhhh-CCCCCeeEEEeecCcccccCCCccc---cCc---c--ccccCCCCCCCCCcccCceeecHHHHHHHHHhcccc
Q 022071 151 QTLVRH-RSKPRVYIGCMKSGPVLNQKGVRYH---EPE---Y--WKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVL 221 (303)
Q Consensus 151 ~~L~~~-~~~~~ly~G~~~~~pv~r~~~~Kw~---~p~---~--~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~ 221 (303)
.++... .....+.+|......-.......|. .+. . +.+. +..+. -...+..++++.++..+..... .
T Consensus 102 ~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-d~~~g~~~~~r~~~~~~~~~~~-~ 177 (211)
T cd04188 102 KLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLL--GLGIK-DTQCGFKLFTRDAARRLFPRLH-L 177 (211)
T ss_pred HHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHc--CCCCc-ccccCceeEcHHHHHHHHhhhh-c
Confidence 888763 3344566675321000000000111 000 0 0000 11111 1234668999999988763321 2
Q ss_pred CCCCCChHHHHHHHhhCCCe
Q 022071 222 HKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 222 ~~~~~EDV~iG~~l~~l~v~ 241 (303)
..| .+|.-+-.-+...|..
T Consensus 178 ~~~-~~d~el~~r~~~~g~~ 196 (211)
T cd04188 178 ERW-AFDVELLVLARRLGYP 196 (211)
T ss_pred cce-EeeHHHHHHHHHcCCe
Confidence 222 3577665555555443
No 48
>PLN03181 glycosyltransferase; Provisional
Probab=59.42 E-value=59 Score=32.17 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHhcCccccccccccCcEEEEEEeecCCCC------CchhhHHHHH--H-HhhcC-Ceeecc-ccc-cccchhHH
Q 022071 51 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATS------GGILDRAIEA--E-DRKHG-DFMRLD-HVE-GYLELSAK 118 (303)
Q Consensus 51 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~------~~~~~~~l~~--E-~~~~~-Dil~~d-~~D-~Y~nLt~K 118 (303)
++-|+.|.+.-.. ...+.+=+++-|.|..+.+ +..+.+.++. + +++|| ++...+ ..+ .+..-..|
T Consensus 109 D~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaK 185 (453)
T PLN03181 109 DEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAK 185 (453)
T ss_pred HHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhH
Confidence 4556688875321 2123334566666655221 1222333332 1 45666 555443 223 56667888
Q ss_pred HHHHHHHHHhcCCcceEEEecCceee-cH
Q 022071 119 TKIYFATAVSLWDADFYVKVDDDVHV-NI 146 (303)
Q Consensus 119 t~~~~~wa~~~~~~~f~lK~DDD~fV-n~ 146 (303)
+.++-.-+.++++++||.-+|.|+++ |+
T Consensus 186 ipalRaAM~a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 186 LPVVRAAMLAHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred HHHHHHHHHHCCCceEEEEecCCceeecC
Confidence 88888888889999999999999988 44
No 49
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=57.96 E-value=1.2e+02 Score=25.97 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=77.9
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
...+++|...+. +.....+ .+...+..+.... .+. .-|.. .+..+.+..+.+|++.+|+|+.+.++.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 345666655443 2233333 3345555655543 221 12332 233344445899999999999999999988
Q ss_pred HHhhhCCCCCeeEEEeecCcccccC-CCccc------cC-------ccccccCCCCCCCCCcccCceeecHHHHHHHHHh
Q 022071 152 TLVRHRSKPRVYIGCMKSGPVLNQK-GVRYH------EP-------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 217 (303)
Q Consensus 152 ~L~~~~~~~~ly~G~~~~~pv~r~~-~~Kw~------~p-------~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~ 217 (303)
.+.... .+.+ |.+......... ...|. .. ..... . .-...+.|+..++.+++++.+.-.
T Consensus 98 l~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~G~~~~~rr~~l~~~~~~ 170 (235)
T cd06434 98 MLKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---D-GGVPCLSGRTAAYRTEILKDFLFL 170 (235)
T ss_pred HHHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---C-CCEEEccCcHHHHHHHHHhhhhhH
Confidence 887764 3332 222110000000 01110 00 00000 0 011235678888888888765322
Q ss_pred cc-------ccCCCCCChHHHHHHHhhCCCe
Q 022071 218 QH-------VLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 218 ~~-------~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
.. ..+....||..++.-+...|..
T Consensus 171 ~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 171 EEFTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred HHhhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 11 1233457999998888665544
No 50
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=57.78 E-value=1.2e+02 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEE
Q 022071 123 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGC 166 (303)
Q Consensus 123 ~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~ 166 (303)
...+.+..+.+|++.+|+|..+.++.|...+......+...+|+
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 34455556789999999999999998887765553334445565
No 51
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=56.63 E-value=42 Score=31.39 Aligned_cols=163 Identities=10% Similarity=0.102 Sum_probs=94.2
Q ss_pred cCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeecccc--ccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHH
Q 022071 70 EKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV--EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIA 147 (303)
Q Consensus 70 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~--D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~ 147 (303)
..++.++|+-|.. ..+..|..=.....-++.+++. +.+..-+.--..+..|+.+.++..+++.+|-|+|.-.+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4466677776654 3566777777777777888864 45555455566777888887899999999999999999
Q ss_pred HHHHHHhhhC---CCC----CeeE--EEee--cCcccccCC-Cccc----cCccccccCCCCCCCCCcccCceeecHHHH
Q 022071 148 TLGQTLVRHR---SKP----RVYI--GCMK--SGPVLNQKG-VRYH----EPEYWKFGEAGNRYFRHATGQLYAISKDLA 211 (303)
Q Consensus 148 ~L~~~L~~~~---~~~----~ly~--G~~~--~~pv~r~~~-~Kw~----~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~ 211 (303)
+..+.|+-.. .+. .+.. -+.. .+.+..+-. .+|- ++.--.++ .+..++.=..-+..+++++.-
T Consensus 111 nF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~-~~~~ff~~~~T~~~liN~~~F 189 (346)
T COG4092 111 NFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFR-KEDNFFIAPYTNIFLINRRMF 189 (346)
T ss_pred HHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhC-cccccccccccceEEEehhHH
Confidence 9999884321 111 1111 0111 111111111 1121 00000001 112332223356788888887
Q ss_pred HHHHHhccccCCCCCChHHH-HHHHhhC
Q 022071 212 AYISINQHVLHKYANEDVSL-GSWFIGL 238 (303)
Q Consensus 212 ~~i~~~~~~~~~~~~EDV~i-G~~l~~l 238 (303)
.+..-....+.-...||.-+ ..+...+
T Consensus 190 ~~tgGydE~F~GhG~EDfe~~~R~~l~~ 217 (346)
T COG4092 190 SLTGGYDERFRGHGSEDFEFLTRLGLYI 217 (346)
T ss_pred HHhcCCccccccCCchhHHHHHHHHHHH
Confidence 77766666677778888865 5555433
No 52
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=56.36 E-value=2.1e+02 Score=28.12 Aligned_cols=127 Identities=10% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCee--EEEeecCc-ccccCCCc--cccCc--------ccc
Q 022071 121 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVY--IGCMKSGP-VLNQKGVR--YHEPE--------YWK 187 (303)
Q Consensus 121 ~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly--~G~~~~~p-v~r~~~~K--w~~p~--------~~~ 187 (303)
.+++++.+..+.+|++.+|+|..+.++.|.+.+......+.+- .|.+...+ ........ +.... .+.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3456666667889999999999999999998887664333332 23332211 00000000 01110 000
Q ss_pred ccC---CCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHh---hCCCeEecCCCccc
Q 022071 188 FGE---AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI---GLDVEHIDDRRLCC 250 (303)
Q Consensus 188 ~~~---~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~---~l~v~~~~~~~f~~ 250 (303)
.+. .....+..++|++.++.++++..+.--. ...-.||..++.=+. +-.+....+..+.+
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 000 0001122357888888888877653211 122389999987553 32344444444433
No 53
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=54.26 E-value=1.5e+02 Score=25.90 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCC-CCe-eEEE-eecCcccccCCCccccCccc-ccc-----CC
Q 022071 121 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSK-PRV-YIGC-MKSGPVLNQKGVRYHEPEYW-KFG-----EA 191 (303)
Q Consensus 121 ~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~Kw~~p~~~-~~~-----~~ 191 (303)
..++.+.+..+.+|++.+|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+.. .+. ..
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665678999999999999999999888766432 332 2222 11100000000011000000 000 00
Q ss_pred CCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 192 GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 192 ~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
....+..++|++.++++++++.+.-... ....||..++.=+...|.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r 200 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYR 200 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCce
Confidence 0123334678889999999988743221 2347999998877655544
No 54
>PRK10018 putative glycosyl transferase; Provisional
Probab=53.12 E-value=1.9e+02 Score=26.69 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHHHhcCCcceEEEecCceeecHHHHHHHHhhh
Q 022071 123 FATAVSLWDADFYVKVDDDVHVNIATLGQTLVRH 156 (303)
Q Consensus 123 ~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~ 156 (303)
...+.+....+|++..|+|..+.++.|...+...
T Consensus 77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 3444555689999999999999999888877654
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=51.84 E-value=1.5e+02 Score=25.13 Aligned_cols=90 Identities=12% Similarity=0.002 Sum_probs=49.2
Q ss_pred HHHhcCCcceEEEecCceeecHHHHHHHHhh-hCCCCCeeEEEee-cCcccccCCCcc--ccC--ccccccCCCCCCCCC
Q 022071 125 TAVSLWDADFYVKVDDDVHVNIATLGQTLVR-HRSKPRVYIGCMK-SGPVLNQKGVRY--HEP--EYWKFGEAGNRYFRH 198 (303)
Q Consensus 125 wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~~~~Kw--~~p--~~~~~~~~~~~Yp~y 198 (303)
...+....+|++.+|+|..+.++.|...+.. ..+...+..|... ..... .....+ ..+ ..+........-...
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSD 150 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3334345699999999999999988888876 3444555555432 11110 000000 000 000000000111234
Q ss_pred cccCceeecHHHHHHHH
Q 022071 199 ATGQLYAISKDLAAYIS 215 (303)
Q Consensus 199 ~~G~gYilS~~l~~~i~ 215 (303)
+.|++.++++++++.+.
T Consensus 151 ~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 151 PTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCccchhhHHHHHHHh
Confidence 67888899999999886
No 56
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=51.77 E-value=1.7e+02 Score=25.71 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=77.8
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCC--eeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGD--FMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATL 149 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~D--il~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L 149 (303)
.+.+++|-..+.+ . ..+.+++-.++|++ +......... ... .+++.+.+..+.+|++.+|+|..+.++.|
T Consensus 40 ~~eiivvDdgS~D--~-t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~----~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD--G-TQDVVKQLQKVYGEDRILLRPRPGKL-GLG----TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC--C-HHHHHHHHHHhcCCCcEEEEecCCCC-CHH----HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777665542 2 33334443445543 2222222211 111 24444455557899999999999999998
Q ss_pred HHHHhhhCC-CCCeeEEEee--cCcccccCCCcc---ccCc------cccccCCCCCCCCCcccCceeecHHHHHHHHHh
Q 022071 150 GQTLVRHRS-KPRVYIGCMK--SGPVLNQKGVRY---HEPE------YWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 217 (303)
Q Consensus 150 ~~~L~~~~~-~~~ly~G~~~--~~pv~r~~~~Kw---~~p~------~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~ 217 (303)
..++..... ...+..|... .+.. .+..| ..+. .+.+ + ..-+...|++.++++++++.+...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~---~-~~~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLL---W-PGVSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHh---C-CCCCcCCCcccceeHHHHHHHHhh
Confidence 888865532 3345555421 1100 00001 0100 0111 1 111235688889999999998643
Q ss_pred ccccCCCCCChHHHHHHHh--hCCCeEe
Q 022071 218 QHVLHKYANEDVSLGSWFI--GLDVEHI 243 (303)
Q Consensus 218 ~~~~~~~~~EDV~iG~~l~--~l~v~~~ 243 (303)
.... .| .+|+-+...+. +..+..+
T Consensus 185 ~~~~-~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 185 VVSK-GY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred ccCC-Cc-EEehHHHHHHHHcCCcEEEe
Confidence 2211 22 23555544443 4444444
No 57
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=50.72 E-value=2.2e+02 Score=30.14 Aligned_cols=200 Identities=14% Similarity=0.032 Sum_probs=101.2
Q ss_pred CCCceeEEEEEECCCCCHH-HHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhh--HHHHHHHhhcC---Ce
Q 022071 30 GKRRYLMVVGINTAFSSRK-RRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILD--RAIEAEDRKHG---DF 103 (303)
Q Consensus 30 ~~~~~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~--~~l~~E~~~~~---Di 103 (303)
.....++.|+|.+.-...+ -+..|+.+..+-.. ......+.+ ||+..+.+++.... .++.+=.++++ .+
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i 194 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRI 194 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcE
Confidence 3445667777777665544 34677777764321 001223444 88876653211110 01111123343 33
Q ss_pred eeccccccccchhHHHHHHHHHHHh-cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCC---c
Q 022071 104 MRLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGV---R 179 (303)
Q Consensus 104 l~~d~~D~Y~nLt~Kt~~~~~wa~~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K 179 (303)
.... .-.|.-.|.-..-.+... -.+++|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+ +
T Consensus 195 ~yr~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR 269 (691)
T PRK05454 195 FYRR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFAR 269 (691)
T ss_pred EEEE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHH
Confidence 3322 223444566655555543 247899999999999999999998876533333 244432221111111 1
Q ss_pred cc-------cC------ccccccCCCCCCCCCcccCceeecHHHHHHHHHh------ccccCCCCCChHHHHHHHhhC--
Q 022071 180 YH-------EP------EYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN------QHVLHKYANEDVSLGSWFIGL-- 238 (303)
Q Consensus 180 w~-------~p------~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~------~~~~~~~~~EDV~iG~~l~~l-- 238 (303)
+. .+ ..|..+ -....|...|+.++....+..- ...-...--||...|..+...
T Consensus 270 ~qqf~~~~y~~~~~~G~~~w~~~------~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gy 343 (691)
T PRK05454 270 LQQFATRVYGPLFAAGLAWWQGG------EGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGW 343 (691)
T ss_pred HHHHHHHHHHHHHHhhhhhhccC------ccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCC
Confidence 10 00 001100 0112466678888877654310 011112347999999999655
Q ss_pred CCeEecC
Q 022071 239 DVEHIDD 245 (303)
Q Consensus 239 ~v~~~~~ 245 (303)
.|..+++
T Consensus 344 rV~~~pd 350 (691)
T PRK05454 344 GVWLAPD 350 (691)
T ss_pred EEEEcCc
Confidence 4556665
No 58
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=50.14 E-value=2.1e+02 Score=26.36 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=73.9
Q ss_pred cCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCC-eeEEEe-e--cCcc---
Q 022071 100 HGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR-VYIGCM-K--SGPV--- 172 (303)
Q Consensus 100 ~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~-ly~G~~-~--~~pv--- 172 (303)
+.++..+...++.- ...=.-.+++.|....+. |++-.++|+.+.++.|.+.|+.....+. ...|.. . .++.
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67777765554322 011111455555543222 9999999999999999999987654333 333332 1 1111
Q ss_pred cccC-----CCcc-ccCccccccC--CCCCCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCC
Q 022071 173 LNQK-----GVRY-HEPEYWKFGE--AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLD 239 (303)
Q Consensus 173 ~r~~-----~~Kw-~~p~~~~~~~--~~~~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~ 239 (303)
.+.. ...| ..+....... .......++.|++.++++++++.+---.. --....||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 0000 0111 1111000000 00122225789999999999999865222 1134699999988776555
No 59
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=49.96 E-value=2.9e+02 Score=27.99 Aligned_cols=107 Identities=11% Similarity=-0.035 Sum_probs=57.3
Q ss_pred CcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcc----ccCcccc-c-----cCCCCCCCCCcc
Q 022071 131 DADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY----HEPEYWK-F-----GEAGNRYFRHAT 200 (303)
Q Consensus 131 ~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw----~~p~~~~-~-----~~~~~~Yp~y~~ 200 (303)
++++++-.|-|..+.++.|..+-.. -+...+.-..+...+ .....| |.-+... + ....-.-+--+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~-~~~~~~VQ~pv~~~~---~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYL-LPRHDFVQLPVFSLP---RDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhh-cCCCCEEecceeccC---CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 4699999999999999998764322 222221100011100 111111 1000000 0 000001122368
Q ss_pred cCceeecHHHHHHHHHhcc---ccCCCCCChHHHHHHHhhCCCe
Q 022071 201 GQLYAISKDLAAYISINQH---VLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 201 G~gYilS~~l~~~i~~~~~---~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
|.++++++++++.+..... .-...--||.-+|.-+...|.+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r 277 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR 277 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE
Confidence 9999999999999864321 2223448999999998655544
No 60
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=48.98 E-value=1.2e+02 Score=23.07 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=25.6
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhh
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVR 155 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~ 155 (303)
.+..+.+..+.+|++-+|+|..+.++.+...+..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 3444444448999999999999999888876443
No 61
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.47 E-value=1.7e+02 Score=24.64 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=58.4
Q ss_pred HHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEee----c-CcccccCCCccccCccccccCCCCCCCCC
Q 022071 124 ATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMK----S-GPVLNQKGVRYHEPEYWKFGEAGNRYFRH 198 (303)
Q Consensus 124 ~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~----~-~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y 198 (303)
.-+.+....+|++.+|+|..+.++.|.+.+...... ...+|... . +...+....++..... ....+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~- 135 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP- 135 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-
Confidence 334444568999999999999988888876554332 33334421 1 1110000011111110 01111
Q ss_pred cccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhhCCCe
Q 022071 199 ATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGLDVE 241 (303)
Q Consensus 199 ~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~l~v~ 241 (303)
.++.+.++++++...+-.-... +..||.-++.=+...|-.
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCE
Confidence 2356789999988776432222 268999988777666544
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=41.38 E-value=1.5e+02 Score=26.57 Aligned_cols=113 Identities=8% Similarity=-0.047 Sum_probs=56.7
Q ss_pred HHHHHHhcCCcceEEEecCceeecHHHHHHHHhhhCCCC-Ce-eEEEe-ec-CcccccC---CCccccCccccccCC-CC
Q 022071 122 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP-RV-YIGCM-KS-GPVLNQK---GVRYHEPEYWKFGEA-GN 193 (303)
Q Consensus 122 ~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~-~l-y~G~~-~~-~pv~r~~---~~Kw~~p~~~~~~~~-~~ 193 (303)
++++|.+ .+++|++..|||+.+..+.|...+......+ .+ .+|.. .. ......+ ...+..+. ...... ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5566654 3789999999999999888887776543322 22 22321 11 0000000 00000000 000000 00
Q ss_pred CCCCCcccCceeecHHHHHHHHHhccccCCCCCChHHHHHHHhh
Q 022071 194 RYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIG 237 (303)
Q Consensus 194 ~Yp~y~~G~gYilS~~l~~~i~~~~~~~~~~~~EDV~iG~~l~~ 237 (303)
.-..++.++|.++++++++.+---...+ .+..||+-+..=+..
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~ 185 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQN 185 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHH
Confidence 1122445666789999998874322222 234688877555543
No 63
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=40.73 E-value=1.8e+02 Score=28.74 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=55.9
Q ss_pred HHHHHHHhcCccccccccccCcEEEEEEeecCCCC------CchhhHHHHH---HHhhcCCeeeccc---cccccchhHH
Q 022071 51 DSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATS------GGILDRAIEA---EDRKHGDFMRLDH---VEGYLELSAK 118 (303)
Q Consensus 51 ~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~------~~~~~~~l~~---E~~~~~Dil~~d~---~D~Y~nLt~K 118 (303)
+.-|+.|.+......... ...-+++-|.|..+.+ +..+.+.++. =++.||=-+..+. .+.......|
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 455677877542111111 1234677777776542 1222333332 1456663333453 2234566789
Q ss_pred HHHHHHHHHhcCCcceEEEecCceee
Q 022071 119 TKIYFATAVSLWDADFYVKVDDDVHV 144 (303)
Q Consensus 119 t~~~~~wa~~~~~~~f~lK~DDD~fV 144 (303)
.-++.+.+.++++++||.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 88888888889999999999999988
No 64
>PHA01631 hypothetical protein
Probab=38.35 E-value=96 Score=26.78 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=52.7
Q ss_pred cCCeeeccccccccchhHHHHHHHHHHHh---cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccC
Q 022071 100 HGDFMRLDHVEGYLELSAKTKIYFATAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQK 176 (303)
Q Consensus 100 ~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~---~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~ 176 (303)
+.+|+...-...++.+. ...++..+.+ .-+-+.++.+|.|++|+.-. .. .++..++.=|... +
T Consensus 39 ~~~Ii~~~t~~e~Rr~R--IAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiPA---~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRWLR--IAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYWL---Y--- 104 (176)
T ss_pred CCceEEecccchhHHHH--HHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeeee---e---
Confidence 45666555333333332 2233333433 34677888999999997532 11 1233445445321 1
Q ss_pred CCccccCccccccCCCCCCCCCcccCceeecHHHHHHHHHh
Q 022071 177 GVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISIN 217 (303)
Q Consensus 177 ~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~l~~~i~~~ 217 (303)
.| |.+.+-+||.|.-+++.+..+..|...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 123555789999999999999888654
No 65
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=37.06 E-value=1.6e+02 Score=21.78 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=29.6
Q ss_pred cCCeeeccccccccchhHHHHHHHHHHHh-cCCcceEEEecCceeecHHH
Q 022071 100 HGDFMRLDHVEGYLELSAKTKIYFATAVS-LWDADFYVKVDDDVHVNIAT 148 (303)
Q Consensus 100 ~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~-~~~~~f~lK~DDD~fVn~~~ 148 (303)
+.++-.......|..-... ....+.+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 3445555555566443333 334444444 35899999999999987654
No 66
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=34.92 E-value=1.6e+02 Score=27.79 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=28.9
Q ss_pred CCCCceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCC
Q 022071 29 SGKRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSA 83 (303)
Q Consensus 29 ~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~ 83 (303)
..+.+..+.|||.|.... +-+.+.+|=++--+.+..- +...+.++-+++.++
T Consensus 47 ~~~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~-Er~~i~IvVllAd~D 98 (297)
T PF04666_consen 47 KPRTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPE-ERKDIVIVVLLADTD 98 (297)
T ss_pred CCCCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHH-HhcCeEEEEEecCCC
Confidence 345556699999997643 3456666766643222111 233455555556553
No 67
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=34.12 E-value=2.8e+02 Score=25.82 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=53.2
Q ss_pred cCcEEEEEEeecCCCCCchhhHHHHHHH----------hhcCCeeec--ccccc------------ccchhHHHHHHH-H
Q 022071 70 EKGIIMRFVIGHSATSGGILDRAIEAED----------RKHGDFMRL--DHVEG------------YLELSAKTKIYF-A 124 (303)
Q Consensus 70 ~~~v~~~FvlG~~~~~~~~~~~~l~~E~----------~~~~Dil~~--d~~D~------------Y~nLt~Kt~~~~-~ 124 (303)
...|.+-|+++.+.. .+...+.|+++. ..|+.|.++ ||.+. ....-.+.++-. +
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456889999998863 223444455433 235554443 55331 111223333322 2
Q ss_pred HHHh---cCCcceEEEecCceeecHHHHHHHHhhhC
Q 022071 125 TAVS---LWDADFYVKVDDDVHVNIATLGQTLVRHR 157 (303)
Q Consensus 125 wa~~---~~~~~f~lK~DDD~fVn~~~L~~~L~~~~ 157 (303)
|+.. .+..+|++-.|-|+.-.++.|++.|....
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 3222 35899999999999999999999997764
No 68
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=30.91 E-value=2.8e+02 Score=27.26 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=47.0
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccc-cchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGY-LELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 150 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y-~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~ 150 (303)
...+.|++-.++++ .-+.++.=.++|..+=--=|..+- -.+.-|.-.++-- ++--.+++++..|||+++.++.+.
T Consensus 114 ~~ElLfcv~s~eDp---Ai~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSEDP---AIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCCCc---HHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHH-HHHhcCCEEEEecCCeeecCchHH
Confidence 56788988777632 224455556677632111022211 1244555443322 222256699999999999999999
Q ss_pred HHHhhh
Q 022071 151 QTLVRH 156 (303)
Q Consensus 151 ~~L~~~ 156 (303)
..-..-
T Consensus 190 dm~t~M 195 (431)
T KOG2547|consen 190 DMATTM 195 (431)
T ss_pred HHHHhh
Confidence 877543
No 69
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=29.94 E-value=30 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred HHHhcCccccccccccCcEEEEEEeecCC
Q 022071 55 ATWMLQGEKRKRLEEEKGIIMRFVIGHSA 83 (303)
Q Consensus 55 ~TW~~~~~~~~~l~~~~~v~~~FvlG~~~ 83 (303)
++|+++. +...++..|.-+|++|...
T Consensus 9 qSWM~DL---rS~I~~~~I~ql~ipGsHn 34 (51)
T PF03490_consen 9 QSWMSDL---RSSIGEMAITQLFIPGSHN 34 (51)
T ss_pred HHHHHHH---HHHHhcceeeeEEeccccc
Confidence 6899874 3344577899999999875
No 70
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=28.63 E-value=70 Score=29.11 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCccccCccccccCCCCCCCCCcccCceeecHH
Q 022071 130 WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKD 209 (303)
Q Consensus 130 ~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~p~~~~~~~~~~~Yp~y~~G~gYilS~~ 209 (303)
...+-|+-+|||+.++.+.|...+...+..+.-++|.....-.....+.+|--...| .+.|- -.-.++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYS-MVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BS-EE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcch-hhhhhhHhhcch
Confidence 478999999999999999999888877665555678752110111123344211111 12332 233455556666
Q ss_pred HHHHHHHhcc-----cc-CCCCCChHHHHHHHh
Q 022071 210 LAAYISINQH-----VL-HKYANEDVSLGSWFI 236 (303)
Q Consensus 210 l~~~i~~~~~-----~~-~~~~~EDV~iG~~l~ 236 (303)
.......... .+ ....-||+.+-.+++
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6554332111 11 235789999988875
No 71
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=27.66 E-value=3.5e+02 Score=22.28 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=51.0
Q ss_pred HHHHHHHh-cCCcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcccc---C-c----cc--ccc
Q 022071 121 IYFATAVS-LWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHE---P-E----YW--KFG 189 (303)
Q Consensus 121 ~~~~wa~~-~~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw~~---p-~----~~--~~~ 189 (303)
.+++++.+ ..+.+|++.+|.|+.+.++.|..++........+..|+..... +...|.- . . .+ ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHH
Confidence 34544432 2468999999999999998888888776544455556542111 1111210 0 0 00 000
Q ss_pred CCCCCCCCCcccCceeecHHHHHH
Q 022071 190 EAGNRYFRHATGQLYAISKDLAAY 213 (303)
Q Consensus 190 ~~~~~Yp~y~~G~gYilS~~l~~~ 213 (303)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122335689999999999987
No 72
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=25.30 E-value=8.5e+02 Score=25.97 Aligned_cols=194 Identities=6% Similarity=-0.057 Sum_probs=95.0
Q ss_pred CCceeEEEEEECCCCCHHHHHHHHHHHhcCccccccccccCcEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccc
Q 022071 31 KRRYLMVVGINTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVE 110 (303)
Q Consensus 31 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D 110 (303)
++...+-|+|.-.-....-.+.|...=.... -.++.++++.. .+ |+...+.+++-.++|.++..+.+..
T Consensus 60 ~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ld--------YP~~eI~vi~~-~n--D~~T~~~~~~l~~~~p~~~~v~~~~ 128 (727)
T PRK11234 60 PDEKPLAIMVPAWNETGVIGNMAELAATTLD--------YENYHIFVGTY-PN--DPATQADVDAVCARFPNVHKVVCAR 128 (727)
T ss_pred CCCCCEEEEEecCcchhhHHHHHHHHHHhCC--------CCCeEEEEEec-CC--ChhHHHHHHHHHHHCCCcEEEEeCC
Confidence 3345566666664444334444443211111 22356666654 22 3334455555567788764333323
Q ss_pred cccchhHHHHHHHHHHHhc-------C--CcceEEEecCceeecHHHHHHHHhhhCCCCCeeEEEeecCcccccCCCcc-
Q 022071 111 GYLELSAKTKIYFATAVSL-------W--DADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRY- 180 (303)
Q Consensus 111 ~Y~nLt~Kt~~~~~wa~~~-------~--~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~Kw- 180 (303)
. . .+.|..+ ++++... . .++.++-.|-|+.|.++.|. .+........+.-+... |..+. .+.|
T Consensus 129 ~-g-~~gKa~a-LN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~~ 201 (727)
T PRK11234 129 P-G-PTSKADC-LNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHFT 201 (727)
T ss_pred C-C-CCCHHHH-HHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHHH
Confidence 1 1 2445543 3443331 1 34557779999999999997 34333221121111111 11111 1111
Q ss_pred ---ccCccc-cccCC-----CCCCCCCcccCceeecHHHHHHHHHhc---cccCCCCCChHHHHHHHhhCCCeE
Q 022071 181 ---HEPEYW-KFGEA-----GNRYFRHATGQLYAISKDLAAYISINQ---HVLHKYANEDVSLGSWFIGLDVEH 242 (303)
Q Consensus 181 ---~~p~~~-~~~~~-----~~~Yp~y~~G~gYilS~~l~~~i~~~~---~~~~~~~~EDV~iG~~l~~l~v~~ 242 (303)
|..+.. .++-. .-.-+-.++|.+..+|+..++.+.... ......--||.-+|.-+...|.+.
T Consensus 202 ~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v 275 (727)
T PRK11234 202 SGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMRE 275 (727)
T ss_pred HHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEE
Confidence 111110 00000 001123478999999988776665544 233444589999999997666553
No 73
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=22.55 E-value=90 Score=24.75 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=26.8
Q ss_pred cCCCCCCceeEEEEEE-CCCCCHHHHHHHHHHHhcCc
Q 022071 26 TESSGKRRYLMVVGIN-TAFSSRKRRDSVRATWMLQG 61 (303)
Q Consensus 26 ~~~~~~~~~~lli~V~-S~~~~~~rR~aIR~TW~~~~ 61 (303)
+|...+++.+++++|+ ..+....+-++||+.|...-
T Consensus 52 ~g~~~rE~Skvv~i~~~~~~~~~~~i~~Ir~~Yk~rF 88 (104)
T PF12098_consen 52 TGRLIRERSKVVIIVHPDTPAAEARIEAIREAYKQRF 88 (104)
T ss_pred CCcEeecccEEEEEEeCCChHHHHHHHHHHHHHHHHh
Confidence 4455678888888888 34556677799999999763
No 74
>PRK10073 putative glycosyl transferase; Provisional
Probab=21.56 E-value=6.7e+02 Score=23.44 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=44.2
Q ss_pred cEEEEEEeecCCCCCchhhHHHHHHHhhcCCeeeccccccccchhHHHHHHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 72 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 72 ~v~~~FvlG~~~~~~~~~~~~l~~E~~~~~Dil~~d~~D~Y~nLt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
.+.++.|-.-++ +. ....+++-.+.+..+..+.- + |.- .-.+.+...+..+.+|++.+|+|-++.++.|..
T Consensus 35 ~~EIIiVdDgSt--D~-t~~i~~~~~~~~~~i~vi~~-~---n~G--~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~ 105 (328)
T PRK10073 35 ALEIIIVNDGST--DN-SVEIAKHYAENYPHVRLLHQ-A---NAG--VSVARNTGLAVATGKYVAFPDADDVVYPTMYET 105 (328)
T ss_pred CeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEC-C---CCC--hHHHHHHHHHhCCCCEEEEECCCCccChhHHHH
Confidence 466666654443 22 22333333444555544431 2 211 223345555666889999999999999988887
Q ss_pred HHhhh
Q 022071 152 TLVRH 156 (303)
Q Consensus 152 ~L~~~ 156 (303)
.+...
T Consensus 106 l~~~~ 110 (328)
T PRK10073 106 LMTMA 110 (328)
T ss_pred HHHHH
Confidence 77654
No 75
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=21.23 E-value=1.1e+02 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCcceEEEecCceeecHHHHHH
Q 022071 121 IYFATAVSLWDADFYVKVDDDVHVNIATLGQ 151 (303)
Q Consensus 121 ~~~~wa~~~~~~~f~lK~DDD~fVn~~~L~~ 151 (303)
.+++-+.+..+++|++.+.||+++.-++++.
T Consensus 44 ~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~ 74 (217)
T PF13712_consen 44 AAYNEAMEKAKAKYLVFLHQDVFIINENWLE 74 (217)
T ss_dssp THHHHHGGG--SSEEEEEETTEE-SSHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeCCeEEcchhHHH
Confidence 4666677778999999999999996544333
No 76
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=21.10 E-value=1.2e+02 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHhcCCcceEEEecCceeec
Q 022071 115 LSAKTKIYFATAVSLWDADFYVKVDDDVHVN 145 (303)
Q Consensus 115 Lt~Kt~~~~~wa~~~~~~~f~lK~DDD~fVn 145 (303)
-..|..++-+.+.++++++||+-+|.|+++.
T Consensus 60 ~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 60 SWAKIPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHTHHHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred hhHHHHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 4678888888888899999999999999884
No 77
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.74 E-value=1.8e+02 Score=25.72 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCcceEEEecCceeecHHHHHHHHhhhCCCCCe--eEEEeec-Cc---cc-ccCCCccccCcc-ccccCCCCCCCCCccc
Q 022071 130 WDADFYVKVDDDVHVNIATLGQTLVRHRSKPRV--YIGCMKS-GP---VL-NQKGVRYHEPEY-WKFGEAGNRYFRHATG 201 (303)
Q Consensus 130 ~~~~f~lK~DDD~fVn~~~L~~~L~~~~~~~~l--y~G~~~~-~p---v~-r~~~~Kw~~p~~-~~~~~~~~~Yp~y~~G 201 (303)
.+.+|++.+|.|+.+.++.|...+......+++ ..|.+.. .+ .+ +-...-|..... .......-.+...+.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 489999999999999999988888765333442 2233211 10 00 000000100000 0000011234556789
Q ss_pred CceeecHHHHHHHHHhcc----------cc-------CCCCCChHHHHHHHhhCC
Q 022071 202 QLYAISKDLAAYISINQH----------VL-------HKYANEDVSLGSWFIGLD 239 (303)
Q Consensus 202 ~gYilS~~l~~~i~~~~~----------~~-------~~~~~EDV~iG~~l~~l~ 239 (303)
+++++.+++++.+..... .+ .....||..++..+...+
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 999999998876532111 00 112479999988885444
Done!