BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022072
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp
Family Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 58.2 bits (139), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89
T+ KPR+ WT +LH++F+ AV LG +A PK I+ MNV LT ++ SHLQK+R+
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 249 SSG--GLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI 303
SSG L +GS G N +L+ T G WGEVK+ Q+ + R I Y +
Sbjct: 8 SSGRENLYFQGSTKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV 64
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 187 ADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRAD--CS--TES 242
+D + KGL K + LDS GFY + + + +Q L + + AD C T
Sbjct: 109 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQ----QLVAYYSKHADGLCHRLTNV 164
Query: 243 CLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMG 284
C TS + GL + + ++ L L+ G +GEV MG
Sbjct: 165 CPTSKPQTQGLAKDAWEIPRES--LRLEVKLGQGCFGEVWMG 204
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 187 ADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRAD--CS--TES 242
+D + KGL K + LDS GFY + + +Q L + + AD C T
Sbjct: 108 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ----QLVAYYSKHADGLCHRLTTV 163
Query: 243 CLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMG 284
C TS + GL + + ++ L L+ G +GEV MG
Sbjct: 164 CPTSKPQTQGLAKDAWEIPRES--LRLEVKLGQGCFGEVWMG 203
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 187 ADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRAD--CS--TES 242
+D + KGL K + LDS GFY + + +Q L + + AD C T
Sbjct: 108 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ----QLVAYYSKHADGLCHRLTTV 163
Query: 243 CLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMG 284
C TS + GL + + ++ L L+ G +GEV MG
Sbjct: 164 CPTSKPQTQGLAKDAWEIPRES--LRLEVKLGQGCFGEVWMG 203
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 187 ADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRAD--CS--TES 242
+D + KGL K + LDS GFY + + +Q L + + AD C T
Sbjct: 108 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ----QLVAYYSKHADGLCHRLTTV 163
Query: 243 CLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMG 284
C TS + GL + + ++ L L+ G +GEV MG
Sbjct: 164 CPTSKPQTQGLAKDAWEIPRES--LRLEVKLGQGCFGEVWMG 203
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 257 GSPVGGKNSILSLDTTTGSLIWGEVKMGAQEISLARENPSGISGYGI 303
GS G N +L+ T G WGEVK+ Q+ + R I Y +
Sbjct: 1 GSTKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV 47
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 187 ADSEKCKGLGTKMPRSYILDSLGFYTSQSVEVAEVQCPEELLPNLHPQRAD--CS--TES 242
+D + KGL K + LDS GFY + + +Q L + + AD C T
Sbjct: 191 SDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQ----QLVAYYSKHADGLCHRLTTV 246
Query: 243 CLTSHESSGGLTMEGSPVGGKNSILSLDTTTGSLIWGEVKMG 284
C TS + GL + + ++ L L+ G +GEV MG
Sbjct: 247 CPTSKPQTQGLAKDAWEIPRES--LRLEVKLGQGCFGEVWMG 286
>pdb|1HQI|A Chain A, Component P2 From The Multicomponent Phenol Hydroxylase,
Nmr, 11 Structures
Length = 90
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 146 LQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGGAVVDADSEK 191
+++EAEK L+IR+ + L ++L D I G VD D ++
Sbjct: 38 IRIEAEKRLEIRRETVEENLGRAWDVQEMLVDVITIGGNVDEDDDR 83
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 96 MGDSPKDASYLIESSANDNSLPNFPASDMNESYEVKEALRVQMEVQSKLHLQVEAEKH 153
MG P + S + ++ + L NF A EVK+ LR + +++ + V H
Sbjct: 22 MGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAH 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,936,788
Number of Sequences: 62578
Number of extensions: 350320
Number of successful extensions: 652
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 15
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)