Query 022072
Match_columns 303
No_of_seqs 211 out of 401
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 7.7E-25 1.7E-29 159.9 5.8 50 127-176 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 7.1E-24 1.5E-28 205.7 7.3 61 31-92 232-292 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 7.4E-22 1.6E-26 146.6 6.6 56 34-89 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.2 0.0009 1.9E-08 47.0 5.3 48 36-87 1-48 (48)
5 smart00426 TEA TEA domain. 90.6 0.32 6.9E-06 38.1 3.5 18 38-55 5-22 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 78.0 4 8.8E-05 30.4 4.0 23 142-164 6-28 (51)
7 PF15235 GRIN_C: G protein-reg 76.2 1.8 3.9E-05 38.1 2.0 19 148-166 70-88 (137)
8 TIGR02894 DNA_bind_RsfA transc 66.8 31 0.00068 31.2 7.7 51 32-88 44-94 (161)
9 PF12776 Myb_DNA-bind_3: Myb/S 62.1 12 0.00026 28.8 3.8 51 38-88 1-63 (96)
10 PF01285 TEA: TEA/ATTS domain 56.6 11 0.00023 38.6 3.3 55 32-86 45-112 (431)
11 smart00501 BRIGHT BRIGHT, ARID 49.7 16 0.00035 28.7 2.7 47 41-88 32-85 (93)
12 smart00717 SANT SANT SWI3, AD 48.8 70 0.0015 20.5 5.7 44 37-85 2-45 (49)
13 cd00167 SANT 'SWI3, ADA2, N-Co 45.9 77 0.0017 20.1 5.5 43 38-85 1-43 (45)
14 PF07384 DUF1497: Protein of u 37.4 28 0.00061 26.3 2.1 22 37-58 36-57 (59)
15 cd07646 I-BAR_IMD_IRSp53 Inver 37.0 1E+02 0.0022 29.5 6.2 39 128-166 66-113 (232)
16 PF09535 Gmx_para_CXXCG: Prote 25.6 33 0.00072 32.8 1.0 12 44-55 214-225 (237)
17 KOG3841 TEF-1 and related tran 24.6 47 0.001 34.1 1.9 53 34-88 74-143 (455)
18 PF01519 DUF16: Protein of unk 22.6 3.9E+02 0.0085 22.7 6.7 20 152-171 70-89 (102)
19 PF08127 Propeptide_C1: Peptid 21.8 52 0.0011 23.2 1.2 35 43-84 1-35 (41)
20 KOG2620 Prohibitins and stomat 21.3 2.2E+02 0.0048 28.1 5.7 43 124-166 153-201 (301)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.91 E-value=7.7e-25 Score=159.87 Aligned_cols=50 Identities=52% Similarity=0.791 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHhhhhhhhhHHHHHhHhHhHHHhhHHHH-HHHHHHHHhh
Q 022072 127 SYEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLA-MLERACKILT 176 (303)
Q Consensus 127 ~~qi~EALr~QmEVQrrLHEQLEVQRhLQLRIEAQGKYLq-iLEKAqe~la 176 (303)
+++|+||||+||||||||||||||||+||+|||||||||+ |||||+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999998 9999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=7.1e-24 Score=205.75 Aligned_cols=61 Identities=46% Similarity=0.728 Sum_probs=58.0
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhccccC
Q 022072 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQS 92 (303)
Q Consensus 31 ~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~~ 92 (303)
..+|+||+||+|||++||+||++|| .+|||||+||++|+|+|||++||||||||||+.++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 3689999999999999999999999 799999999999999999999999999999998763
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=7.4e-22 Score=146.59 Aligned_cols=56 Identities=63% Similarity=0.978 Sum_probs=54.4
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhcc
Q 022072 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89 (303)
Q Consensus 34 KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (303)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.20 E-value=0.0009 Score=46.98 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=41.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhh
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYR 87 (303)
|-.||+|=+.+|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999993 2 6788999888 7999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.62 E-value=0.32 Score=38.15 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=16.5
Q ss_pred ccChHHHHHHHHHHHHhC
Q 022072 38 RWTADLHDRFVDAVTQLG 55 (303)
Q Consensus 38 rWT~eLH~rFv~AV~qLG 55 (303)
+|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 799999999999998775
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=78.02 E-value=4 Score=30.42 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHhHhHhHHHhhHH
Q 022072 142 SKLHLQVEAEKHLQIRQNAQQRY 164 (303)
Q Consensus 142 rrLHEQLEVQRhLQLRIEAQGKY 164 (303)
--|..|+||||+|.=.+|.|.+-
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~L 28 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRHL 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777553
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=76.15 E-value=1.8 Score=38.11 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHHHHhHhHhHHHhhHHHH
Q 022072 148 VEAEKHLQIRQNAQQRYLA 166 (303)
Q Consensus 148 LEVQRhLQLRIEAQGKYLq 166 (303)
+-|||||+++||.|+|-..
T Consensus 70 ~AIQkHLE~qi~e~~~q~~ 88 (137)
T PF15235_consen 70 MAIQKHLERQIEEHERQRA 88 (137)
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 3479999999999998774
No 8
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.77 E-value=31 Score=31.20 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=37.1
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
...=.|||+..+-..+.+||..-- -++-.++.. ...||+.+|-+-||.|..
T Consensus 44 sAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 44 AAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 345689999999999999997543 122222211 267999999999999975
No 9
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=62.15 E-value=12 Score=28.80 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=34.4
Q ss_pred ccChHHHHHHHHHHHHh---CCC-CCCCh-----HHHHhhhcc---CCCCHHHHHHHhhhhhc
Q 022072 38 RWTADLHDRFVDAVTQL---GGP-SKATP-----KAIMRTMNV---KGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 38 rWT~eLH~rFv~AV~qL---GG~-~kAtP-----K~Il~~M~v---~gLT~~hVkSHLQKYRl 88 (303)
+||++..+-||+.+-+. |.- ....+ ..|.+.++- -.+|..||++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 69999999999988543 433 23333 345555553 45688999999985544
No 10
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=56.64 E-value=11 Score=38.56 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChH----------HHHhhhcc-CCC--CHHHHHHHhhhh
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPK----------AIMRTMNV-KGL--TLFHLKSHLQKY 86 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK----------~Il~~M~v-~gL--T~~hVkSHLQKY 86 (303)
+.+..-+|.+++...|++|+...-=..+.+-+ -|-+-+.. -|. |+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45678899999999999999876411122211 11111111 233 679999999998
No 11
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=49.73 E-value=16 Score=28.70 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCC----hHHHHhhhccCCC---CHHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKAT----PKAIMRTMNVKGL---TLFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAt----PK~Il~~M~v~gL---T~~hVkSHLQKYRl 88 (303)
-+|++.|. +|..+||.++.+ =+.|.+.|+++.- ...++++|-.||-+
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 38999998 588999987544 2668889998752 24678888887743
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=48.80 E-value=70 Score=20.53 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=32.2
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhh
Q 022072 37 LRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQK 85 (303)
Q Consensus 37 lrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQK 85 (303)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 1 22455655554 6777777766543
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=45.88 E-value=77 Score=20.11 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=32.2
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhh
Q 022072 38 RWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQK 85 (303)
Q Consensus 38 rWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQK 85 (303)
.||++=+..|+.++.++|- ..-+.|-+.|+ +=|..+|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHH
Confidence 4999999999999999992 23466666663 4677788877654
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=37.36 E-value=28 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.602 Sum_probs=19.2
Q ss_pred cccChHHHHHHHHHHHHhCCCC
Q 022072 37 LRWTADLHDRFVDAVTQLGGPS 58 (303)
Q Consensus 37 lrWT~eLH~rFv~AV~qLGG~~ 58 (303)
-++..|+|.-|-+-|..|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999853
No 15
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=37.02 E-value=1e+02 Score=29.52 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHhhhhhhhhHHHH---------HhHhHhHHHhhHHHH
Q 022072 128 YEVKEALRVQMEVQSKLHLQVEAE---------KHLQIRQNAQQRYLA 166 (303)
Q Consensus 128 ~qi~EALr~QmEVQrrLHEQLEVQ---------RhLQLRIEAQGKYLq 166 (303)
-.|-.||.-=-+|+|.++.+||++ ..|+-++|..-|||.
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~ 113 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLT 113 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788887788999998888875 468889999999985
No 16
>PF09535 Gmx_para_CXXCG: Protein of unknown function (Gmx_para_CXXCG); InterPro: IPR011750 This entry consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment.
Probab=25.58 E-value=33 Score=32.81 Aligned_cols=12 Identities=58% Similarity=1.057 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhC
Q 022072 44 HDRFVDAVTQLG 55 (303)
Q Consensus 44 H~rFv~AV~qLG 55 (303)
-+|||+||++||
T Consensus 214 TERFVeAv~rL~ 225 (237)
T PF09535_consen 214 TERFVEAVQRLG 225 (237)
T ss_pred eHHHHHHHHhcC
Confidence 489999999999
No 17
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=24.62 E-value=47 Score=34.15 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=34.8
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhh--------------hcc---CCCCHHHHHHHhhhhhc
Q 022072 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT--------------MNV---KGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 34 KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~--------------M~v---~gLT~~hVkSHLQKYRl 88 (303)
-.-=+|+++.-+.|.+|....- ..-+-|-||.- ++. +-=|+.+|.||+|..-.
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3456899999999999998664 22233333321 111 34478999999995543
No 18
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=22.57 E-value=3.9e+02 Score=22.66 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.1
Q ss_pred HhHhHhHHHhhHHHHHHHHH
Q 022072 152 KHLQIRQNAQQRYLAMLERA 171 (303)
Q Consensus 152 RhLQLRIEAQGKYLqiLEKA 171 (303)
+.||.+|.+||+=|+.+.++
T Consensus 70 kel~~e~k~qgktL~~I~~~ 89 (102)
T PF01519_consen 70 KELQVEQKAQGKTLQLILKT 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999844443
No 19
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=21.75 E-value=52 Score=23.19 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhh
Q 022072 43 LHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQ 84 (303)
Q Consensus 43 LH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 84 (303)
|-+.|++-||...-..+|..- +++.|..+|+..|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999998755666543 47777777776653
No 20
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=21.35 E-value=2.2e+02 Score=28.13 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=33.5
Q ss_pred CCccccHHHHHHHHHHhhhhhhhhH---HHHHhHhHhH---HHhhHHHH
Q 022072 124 MNESYEVKEALRVQMEVQSKLHLQV---EAEKHLQIRQ---NAQQRYLA 166 (303)
Q Consensus 124 ~~~~~qi~EALr~QmEVQrrLHEQL---EVQRhLQLRI---EAQGKYLq 166 (303)
+.-..++++|..||-|.+|+-.-++ |-.|.+|+.+ |++.|||.
T Consensus 153 I~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~ 201 (301)
T KOG2620|consen 153 IEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILA 201 (301)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhh
Confidence 3344578999999999998866444 4589999977 78889996
Done!