Query 022072
Match_columns 303
No_of_seqs 211 out of 401
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 7.6E-30 2.6E-34 192.7 6.7 61 30-91 1-61 (64)
2 2yum_A ZZZ3 protein, zinc fing 90.0 0.68 2.3E-05 34.1 5.9 54 34-90 6-62 (75)
3 2xag_B REST corepressor 1; ami 87.1 1.1 3.9E-05 44.7 7.0 66 19-90 363-428 (482)
4 2hzd_A Transcriptional enhance 86.9 0.43 1.5E-05 37.4 3.1 57 32-90 2-75 (82)
5 2cu7_A KIAA1915 protein; nucle 86.4 2.1 7.1E-05 31.4 6.5 52 33-90 6-57 (72)
6 2yus_A SWI/SNF-related matrix- 86.0 3.5 0.00012 31.3 7.7 48 35-88 17-64 (79)
7 1x41_A Transcriptional adaptor 83.9 3.9 0.00013 29.0 6.8 51 33-88 5-55 (60)
8 2iw5_B Protein corest, REST co 81.9 2.6 9E-05 38.7 6.4 63 21-89 118-180 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 78.1 7.4 0.00025 29.1 6.8 49 35-89 7-58 (72)
10 2cqr_A RSGI RUH-043, DNAJ homo 73.9 10 0.00034 28.5 6.6 52 35-89 17-69 (73)
11 3sjm_A Telomeric repeat-bindin 71.6 12 0.0004 27.1 6.3 51 30-83 5-55 (64)
12 2elk_A SPCC24B10.08C protein; 65.2 7.4 0.00025 27.4 4.0 49 36-88 9-57 (58)
13 2d9a_A B-MYB, MYB-related prot 64.5 25 0.00087 24.4 6.7 50 32-86 4-53 (60)
14 1wgx_A KIAA1903 protein; MYB D 57.1 33 0.0011 26.0 6.5 48 38-88 10-58 (73)
15 1guu_A C-MYB, MYB proto-oncoge 56.1 32 0.0011 23.1 5.8 46 36-86 3-48 (52)
16 1ity_A TRF1; helix-turn-helix, 56.0 53 0.0018 23.5 7.8 54 32-88 6-59 (69)
17 2cjj_A Radialis; plant develop 49.4 31 0.0011 27.0 5.5 51 36-89 8-59 (93)
18 2yqk_A Arginine-glutamic acid 49.2 16 0.00053 26.4 3.5 47 32-83 5-51 (63)
19 1gvd_A MYB proto-oncogene prot 46.1 53 0.0018 22.0 5.7 46 36-86 3-48 (52)
20 2eqr_A N-COR1, N-COR, nuclear 45.4 18 0.00062 25.7 3.3 45 32-82 8-52 (61)
21 2dim_A Cell division cycle 5-l 42.6 78 0.0027 22.6 6.4 49 33-86 6-54 (70)
22 3ok8_A Brain-specific angiogen 38.4 64 0.0022 29.1 6.5 38 129-166 72-118 (222)
23 2ba2_A D12_ORF131, hypothetica 37.5 80 0.0027 24.8 6.0 38 130-170 34-72 (85)
24 2li6_A SWI/SNF chromatin-remod 36.0 7.3 0.00025 31.2 -0.1 45 41-88 49-97 (116)
25 2kes_A Synphilin-1; synphillin 36.0 31 0.0011 24.3 3.1 23 140-162 16-42 (48)
26 2crg_A Metastasis associated p 35.1 34 0.0011 25.2 3.4 48 31-83 3-50 (70)
27 4eef_G F-HB80.4, designed hema 35.0 13 0.00046 28.5 1.2 51 31-84 15-66 (74)
28 2lm1_A Lysine-specific demethy 32.8 17 0.00058 28.3 1.5 46 41-87 44-95 (107)
29 2aje_A Telomere repeat-binding 29.9 1.2E+02 0.0042 24.1 6.2 51 31-84 8-60 (105)
30 2eqy_A RBP2 like, jumonji, at 29.6 25 0.00084 28.4 2.0 46 42-88 43-94 (122)
31 1kkx_A Transcription regulator 29.2 15 0.00052 29.9 0.7 45 41-88 48-96 (123)
32 1c20_A DEAD ringer protein; DN 28.9 22 0.00074 28.8 1.6 47 41-88 52-105 (128)
33 1w0t_A Telomeric repeat bindin 28.7 1.3E+02 0.0046 20.1 6.3 48 36-86 2-49 (53)
34 2cxy_A BAF250B subunit, HBAF25 28.1 22 0.00077 28.6 1.5 47 41-88 51-103 (125)
35 2jrz_A Histone demethylase jar 26.5 25 0.00084 28.1 1.5 46 42-88 41-92 (117)
36 2jxj_A Histone demethylase jar 26.3 23 0.0008 27.0 1.3 45 41-86 36-86 (96)
37 3ghg_A Fibrinogen alpha chain; 21.8 1.3E+02 0.0046 30.6 6.0 55 127-181 108-163 (562)
38 1deq_A Fibrinogen (alpha chain 21.7 1.2E+02 0.0042 29.6 5.5 50 125-174 109-159 (390)
39 1ig6_A MRF-2, modulator recogn 20.9 20 0.00067 28.1 -0.1 47 41-88 33-86 (107)
40 2kk0_A AT-rich interactive dom 20.7 44 0.0015 27.7 2.0 47 41-88 64-117 (145)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=7.6e-30 Score=192.71 Aligned_cols=61 Identities=46% Similarity=0.771 Sum_probs=58.2
Q ss_pred ecCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhcccc
Q 022072 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQ 91 (303)
Q Consensus 30 s~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~ 91 (303)
++++|||++||+|||++||+||++|| .|+||||.||++|+|+|||++||||||||||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 79999999999999999999999999999999764
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.00 E-value=0.68 Score=34.15 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCCh---HHHHhhhccCCCCHHHHHHHhhhhhccc
Q 022072 34 KPRLRWTADLHDRFVDAVTQLGGPSKATP---KAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (303)
Q Consensus 34 KpRlrWT~eLH~rFv~AV~qLGG~~kAtP---K~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (303)
..+-.||+|=+++|++||..+| .+...| +.|-+. |+|=|-.+|+.|-++|-...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 3466899999999999999999 333223 334444 47899999999999997654
No 3
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=87.08 E-value=1.1 Score=44.74 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=52.9
Q ss_pred CCCCCCCceeeecCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhccc
Q 022072 19 HGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (303)
Q Consensus 19 ~~gg~~~~~Vls~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (303)
+.+|.++.-+.....+..-+||++=|..|++||.+.|- .=+.|-+.++- =|..+|++|-++||...
T Consensus 363 ~~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 363 LDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred hhcccccccCCccccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 35777776665566677899999999999999999992 36677777654 59999999999998754
No 4
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.94 E-value=0.43 Score=37.44 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHh---hh-c-----------c--CCCCHHHHHHHhhhhhccc
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMR---TM-N-----------V--KGLTLFHLKSHLQKYRLGK 90 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~---~M-~-----------v--~gLT~~hVkSHLQKYRl~~ 90 (303)
|.+..-+|.++|-..|++|+...--....+.+ |. .| | . +-=|+.+|.||||.-+..+
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~--ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRKII--LSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCCCC--HHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCcccee--ecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 34566789999999999999977511123221 21 11 1 1 2337789999999877654
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.39 E-value=2.1 Score=31.44 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhccc
Q 022072 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (303)
Q Consensus 33 ~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (303)
...+-.||+|=++.|++||..+|- .=+.|-+. ++|=|-.+|+.|-++|-...
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345778999999999999999992 33555554 58999999999999886544
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=86.00 E-value=3.5 Score=31.34 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=39.3
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 35 PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 35 pRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
.+-.||+|=+.+|++||...|+ + =+.|-+.| ++=|..+++.|-++|-+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~--~--W~~IA~~v--~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD--D--WNKVSEHV--GSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS--C--HHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCC--C--HHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence 4678999999999999999993 3 35666665 57899999999988844
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=83.91 E-value=3.9 Score=29.00 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=39.8
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 33 ~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
.-.+-.||+|=.++|++||..+| ..+ =+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-FGN--WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-TTC--HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cCc--HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34577899999999999999999 222 25565665 68899999999888755
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=81.91 E-value=2.6 Score=38.67 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=50.5
Q ss_pred CCCCCceeeecCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhcc
Q 022072 21 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89 (303)
Q Consensus 21 gg~~~~~Vls~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (303)
++++..-...+..|..-+||+|=++.|++|+...| .+ =..|-++ |++=|..+|++|..+||..
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYG--KD--W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYG--RD--FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHS--SC--HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHC--cC--HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 56655444566678888999999999999999999 22 5666666 6789999999999999864
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.07 E-value=7.4 Score=29.15 Aligned_cols=49 Identities=14% Similarity=0.347 Sum_probs=38.2
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChH---HHHhhhccCCCCHHHHHHHhhhhhcc
Q 022072 35 PRLRWTADLHDRFVDAVTQLGGPSKATPK---AIMRTMNVKGLTLFHLKSHLQKYRLG 89 (303)
Q Consensus 35 pRlrWT~eLH~rFv~AV~qLGG~~kAtPK---~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (303)
..-.||.|=+.+|+.|+..+++ -||. .|-+.| |=|..+|+.|-+++...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3447999999999999999983 3564 455555 67999999998887554
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=73.87 E-value=10 Score=28.51 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=40.5
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhh-ccCCCCHHHHHHHhhhhhcc
Q 022072 35 PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTM-NVKGLTLFHLKSHLQKYRLG 89 (303)
Q Consensus 35 pRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M-~v~gLT~~hVkSHLQKYRl~ 89 (303)
.+-.||++=..+|.+||..+|. -+|..--++= -|||=|-.+|+.|-+.+...
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 3446999999999999999992 3776654433 36899999999998877553
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=71.59 E-value=12 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=36.3
Q ss_pred ecCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHh
Q 022072 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (303)
Q Consensus 30 s~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (303)
++..+.|-.||+|=-++++++|.+.| ..+ =+.|.+.+.+.|=|-.+++-+-
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G-~~~--W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYG-EGN--WAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHC-TTC--HHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCc--hHHHHhhcCCCCCCHHHHHHHH
Confidence 45556778999999999999999999 222 4567777777788888877443
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=65.22 E-value=7.4 Score=27.44 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=35.5
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
+-.||+|=.+++++||.+.| .. .=+.|-+.|+. |=|-.+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~~--~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-LG--NWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-TT--CHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC-cC--CHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 45699999999999999999 21 22445445431 6788889888877643
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=64.45 E-value=25 Score=24.40 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhh
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (303)
+...|-.||+|=.++++++|.++| ..+ =..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G-~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFG-QQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTC-TTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 445688999999999999999999 212 24455554 678888888877665
No 14
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=57.15 E-value=33 Score=25.95 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=36.9
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhh-hccCCCCHHHHHHHhhhhhc
Q 022072 38 RWTADLHDRFVDAVTQLGGPSKATPKAIMRT-MNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 38 rWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~-M~v~gLT~~hVkSHLQKYRl 88 (303)
.||.+=..+|.+|+..++ +.+|-+--++ .-|+|=|.+.|..|-+....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 599999999999999887 4478765443 34789999999887655533
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=56.11 E-value=32 Score=23.12 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=35.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhh
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (303)
+-.||+|=..+++++|.+.|- . .=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT-D--DWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS-S--CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 568999999999999999992 1 235555554 678888888877665
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=55.96 E-value=53 Score=23.47 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
.+++|-.||+|=-.+.+++|.++| ..+ =+.|.+.|.+.|=|-.+++-+-..|-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G-~~~--W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYG-EGN--WSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHC-SSC--HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCc--HHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 467788999999999999999999 222 366777776557888888877666543
No 17
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=49.36 E-value=31 Score=26.98 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=38.0
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHh-hhccCCCCHHHHHHHhhhhhcc
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMR-TMNVKGLTLFHLKSHLQKYRLG 89 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~-~M~v~gLT~~hVkSHLQKYRl~ 89 (303)
.-.||+|=...|.+|+..+| . -+|.+--+ .--|||=|-.+|+.|-+++...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-K--DTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44799999999999999998 2 25644322 2225799999999998877543
No 18
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.22 E-value=16 Score=26.37 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHh
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (303)
+...+-.||+|=|+.|.+|+.+.| .. =..|-+.| |+.=|..+|..+-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG--KN--FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC--SC--HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC--cc--HHHHHHHH-cCCCcHHHHHHHH
Confidence 344466899999999999999999 22 33443311 5667777776443
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=46.07 E-value=53 Score=22.01 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=34.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhh
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (303)
+-.||+|=..+++++|.+.|- . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 124454444 678888888776655
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.45 E-value=18 Score=25.69 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=34.3
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHH
Q 022072 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 82 (303)
Q Consensus 32 ~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSH 82 (303)
.++..-.||++=|+.|++|+.+.| .+ =..|-.. ||+=|..+|..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--KN--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--TC--HHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--CC--HHHHHHH--cCCCCHHHHHHH
Confidence 456678999999999999999998 22 3555443 578888888755
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.64 E-value=78 Score=22.56 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhh
Q 022072 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (303)
Q Consensus 33 ~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (303)
...|-.||+|=.++++++|.+.| .. .=+.|-+.| +|=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G-~~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG-KN--QWSRIASLL--HRKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC-SS--CHHHHHHHS--TTCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cC--CHHHHHHHh--cCCCHHHHHHHHHHH
Confidence 44677899999999999999999 21 235666665 478888888777666
No 22
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=38.45 E-value=64 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHH---------HhHhHhHHHhhHHHH
Q 022072 129 EVKEALRVQMEVQSKLHLQVEAE---------KHLQIRQNAQQRYLA 166 (303)
Q Consensus 129 qi~EALr~QmEVQrrLHEQLEVQ---------RhLQLRIEAQGKYLq 166 (303)
.|.+||.-=-|+||+|..+||.. .+|+.+||...||++
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~ 118 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIK 118 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899988889999999998862 579999999999996
No 23
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=37.46 E-value=80 Score=24.84 Aligned_cols=38 Identities=37% Similarity=0.398 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhHhHhHHHhhHHHH-HHHH
Q 022072 130 VKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLA-MLER 170 (303)
Q Consensus 130 i~EALr~QmEVQrrLHEQLEVQRhLQLRIEAQGKYLq-iLEK 170 (303)
|.+.+..|=|-=+.--||| +.||+-+.|||+-|+ ||+-
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~t 72 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEA 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5565655544333333444 788999999999998 5544
No 24
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.01 E-value=7.3 Score=31.20 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
-+|+..|.. |..+||.++.+. +.|.+.|+++. -..|++|-.||=.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 488888876 789999987664 57788999987 5677887777644
No 25
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=35.98 E-value=31 Score=24.28 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=16.3
Q ss_pred hhhhhhhh----HHHHHhHhHhHHHhh
Q 022072 140 VQSKLHLQ----VEAEKHLQIRQNAQQ 162 (303)
Q Consensus 140 VQrrLHEQ----LEVQRhLQLRIEAQG 162 (303)
+-++|+|| +-+|.+||.=+|||.
T Consensus 16 ltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 16 LTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44566665 456889998888874
No 26
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=35.15 E-value=34 Score=25.16 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=34.8
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHh
Q 022072 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (303)
Q Consensus 31 ~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (303)
+.++..-.||++=|..|.+|+...| -+ -..|-+. -|++-|..+|..+-
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHH-HcCCCCHHHHHHHH
Confidence 4456777999999999999999999 22 3444331 16777887777665
No 27
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=35.00 E-value=13 Score=28.51 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=34.5
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhh-ccCCCCHHHHHHHhh
Q 022072 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTM-NVKGLTLFHLKSHLQ 84 (303)
Q Consensus 31 ~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M-~v~gLT~~hVkSHLQ 84 (303)
+.+-.--.||.+=.+.|..|+.... +-||.+--++- -|||=|...|+.|-|
T Consensus 15 s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 15 STRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3333345699999999999998875 55676554433 268999999998854
No 28
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=32.84 E-value=17 Score=28.32 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCC--HHHHHHHhhhhh
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYR 87 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYR 87 (303)
-+|+..|.. |..+||.++.+- +.|.+.|++|.-| -..++.|=.||=
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 389999986 679999987664 4678899987533 245666665553
No 29
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=29.95 E-value=1.2e+02 Score=24.13 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=38.8
Q ss_pred cCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhh--ccCCCCHHHHHHHhh
Q 022072 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTM--NVKGLTLFHLKSHLQ 84 (303)
Q Consensus 31 ~~~KpRlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M--~v~gLT~~hVkSHLQ 84 (303)
..++.|-.||+|=-+..+++|.++|. .+ =+.|++.+ .++|=|--++|.+-.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~--W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-GR--WRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-SS--HHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CC--hHHHHHHhccccCCCCHHHHHHHHH
Confidence 45788999999999999999999992 23 34677755 247889999995543
No 30
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.61 E-value=25 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCC--HHHHHHHhhhhhc
Q 022072 42 DLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (303)
Q Consensus 42 eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (303)
+|++.|.. |..+||.++.+- +.|.+.|+++.-+ -..++.|=.||=.
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 78988876 789999887654 5678899987533 2466776666644
No 31
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=29.16 E-value=15 Score=29.90 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCCHHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLTLFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT~~hVkSHLQKYRl 88 (303)
-+|+..|.. |..+||.++.+. +.|.+.|+++. -..|+.|-.||=.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 378888875 789999988776 56788999987 6778887776655
No 32
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.92 E-value=22 Score=28.80 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCC-C--HHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGL-T--LFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gL-T--~~hVkSHLQKYRl 88 (303)
-+||..|.. |..+||.++.+- +.|.+.|+++.- | -..|+.|-.||=.
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 389999886 779999987664 567889998752 2 4667777766644
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=28.66 E-value=1.3e+02 Score=20.13 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=34.9
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhccCCCCHHHHHHHhhhh
Q 022072 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (303)
Q Consensus 36 RlrWT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (303)
|-.||+|=.+..+++|...| .. .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G-~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG-EG--NWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC-TT--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC-cC--CHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 22 23567777765467777777654443
No 34
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.07 E-value=22 Score=28.65 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCC--HHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (303)
-+|++.|.. |..+||.++.+- +.|.+.|+++.-| -..|+.|-.||=+
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 378988876 779999987654 4678899998643 2456665555533
No 35
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=26.45 E-value=25 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCC--HHHHHHHhhhhhc
Q 022072 42 DLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (303)
Q Consensus 42 eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (303)
+|+..|.. |..+||.++.+- +.|.+.|+++.-| -..|+.|=.||=.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 78988876 779999987664 5678899987433 3567776666643
No 36
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.30 E-value=23 Score=26.96 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCCC--HHHHHHHhhhh
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKY 86 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKY 86 (303)
-+|+..|.. |..+||.++.+- +.|.+.|+++.-+ -..++.|=.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 378888876 789999987664 5678899986533 34556555555
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.79 E-value=1.3e+02 Score=30.63 Aligned_cols=55 Identities=25% Similarity=0.167 Sum_probs=41.2
Q ss_pred cccHHHHHHHH-HHhhhhhhhhHHHHHhHhHhHHHhhHHHHHHHHHHHHhhhhccc
Q 022072 127 SYEVKEALRVQ-MEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILG 181 (303)
Q Consensus 127 ~~qi~EALr~Q-mEVQrrLHEQLEVQRhLQLRIEAQGKYLqiLEKAqe~la~~~~~ 181 (303)
-.++++-||-+ ..+++++..||.--|-||=.|+.|..=||-||.+--+--+..-+
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677666644 45677788888777899999999999999999877666655433
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.66 E-value=1.2e+02 Score=29.64 Aligned_cols=50 Identities=28% Similarity=0.259 Sum_probs=40.6
Q ss_pred CccccHHHHHHHHHH-hhhhhhhhHHHHHhHhHhHHHhhHHHHHHHHHHHH
Q 022072 125 NESYEVKEALRVQME-VQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKI 174 (303)
Q Consensus 125 ~~~~qi~EALr~QmE-VQrrLHEQLEVQRhLQLRIEAQGKYLqiLEKAqe~ 174 (303)
|.-.++.+-|+.+++ +|+++.+||.-=|.||--|+.|..=+|-||.+-+.
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678888887665 78899999997789999999999999888887643
No 39
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.89 E-value=20 Score=28.06 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCC-C--HHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGL-T--LFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gL-T--~~hVkSHLQKYRl 88 (303)
-+|+..|.. |..+||.++.+- +.|.+.|+++.- | -.+|++|=.||=+
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 488988876 789999987665 467888998642 2 2567777766644
No 40
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.75 E-value=44 Score=27.70 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhccCCC-C--HHHHHHHhhhhhc
Q 022072 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGL-T--LFHLKSHLQKYRL 88 (303)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gL-T--~~hVkSHLQKYRl 88 (303)
-+|+..|.. |..+||.++.+- +.|.+.|+++.- | -..|+.|-.||=+
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 378888876 779999987664 567889998752 1 4667777766644
Done!