BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022073
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 150/209 (71%), Gaps = 10/209 (4%)
Query: 47 QPFVIGVAGGAASGKTTVCDMIIQQL-------HDQRVVLVNQDSFYHNLTEQELARV-- 97
+PF+IGV+GG ASGK++VC I+Q L ++VV+++QDSFY LT ++ A+
Sbjct: 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 80
Query: 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157
++NFDHPDAFD E +L +++++ G+ V IP YDF S+ V P+DV+L EGI
Sbjct: 81 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGI 139
Query: 158 LVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 217
L F+ VR+L MK+FVDTDAD RL+RR+ RD E+GRD+ +L QY FVKPAF++F
Sbjct: 140 LAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFC 199
Query: 218 LPTKKYADIIIPRGGDNHVAIDLIVQHIR 246
LPTKKYAD+IIPRG DN VAI+LIVQHI+
Sbjct: 200 LPTKKYADVIIPRGADNLVAINLIVQHIQ 228
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 150/209 (71%), Gaps = 10/209 (4%)
Query: 47 QPFVIGVAGGAASGKTTVCDMIIQQL-------HDQRVVLVNQDSFYHNLTEQELARV-- 97
+PF+IGV+GG ASGK++VC I+Q L ++VV+++QDSFY LT ++ A+
Sbjct: 19 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 78
Query: 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157
++NFDHPDAFD E +L +++++ G+ V IP YDF S+ V P+DV+L EGI
Sbjct: 79 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGI 137
Query: 158 LVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFI 217
L F+ VR+L MK+FVDTDAD RL+RR+ RD E+GRD+ +L QY FVKPAF++F
Sbjct: 138 LAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFC 197
Query: 218 LPTKKYADIIIPRGGDNHVAIDLIVQHIR 246
LPTKKYAD+IIPRG DN VAI+LIVQHI+
Sbjct: 198 LPTKKYADVIIPRGADNLVAINLIVQHIQ 226
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 165/231 (71%), Gaps = 15/231 (6%)
Query: 40 AAENLHRQ---PFVIGVAGGAASGKTTVCDMIIQQL-------HDQRVVLVNQDSFYHNL 89
ENL+ Q PF+IGV+GG ASGK+TVC+ I++ L ++VV+++QD FY L
Sbjct: 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVL 73
Query: 90 TEQELARV--HEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVN 147
T ++ A+ +YNFDHPDAFD + + +++ + G+ V++P YDF ++ + + V
Sbjct: 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTH-SRLPETTVVY 132
Query: 148 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207
P+DV+L EGILVF+ +R++ ++++FVDTD+DVRL+RR+ RD V +GRD+ +L QY+
Sbjct: 133 PADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYTT 191
Query: 208 FVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIY 258
FVKPAF++F LPTKKYAD+IIPRG DN VAI+LIVQHI+ L D+CK +
Sbjct: 192 FVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDIL-NGDICKWH 241
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 128/195 (65%), Gaps = 4/195 (2%)
Query: 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD 106
+PFVIG+AGG ASGKTT+ + + L +RV L+ D +Y +L L N+DHPD
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDLGHLPLEERLRVNYDHPD 63
Query: 107 AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARR-VNPSDVILLEGILVFHDSRV 165
AFD L + L G V++P YDF++Y + P R V P+ V++LEGILV + +
Sbjct: 64 AFDLALYLEHAQALLRGLPVEMPVYDFRAYTRS--PRRTPVRPAPVVILEGILVLYPKEL 121
Query: 166 RELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 225
R+LM++K+FVD DAD R RR++RD +E+GR + V+ QY + VKP F+ PTK+YAD
Sbjct: 122 RDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYAD 181
Query: 226 IIIPRGGDNHVAIDL 240
+I+PRGG N VA+++
Sbjct: 182 VIVPRGGQNPVALEM 196
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 252 HDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLV 298
D+ +PN+ ++ T Q+R M T+IRD +T K +FVFY+DRLIRL+
Sbjct: 26 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLL 72
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 252 HDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLV 298
D+ +PN+ ++ T Q+R M T+IRD +T K +FVFY+DRLIRL+
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLL 53
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 47/234 (20%)
Query: 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQL-----HDQRVVLVNQDSFYH-NLTEQELAR 96
N R P++I +AG A GK+T ++Q L +RV L+ D F H N +E
Sbjct: 75 NGQRIPYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL 133
Query: 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPA-----RRVNPSDV 151
+ + F P+++D +L+ + L+ G +PN Y + ++ + V D+
Sbjct: 134 MKKKGF--PESYDMHRLVKFVSDLKSG----VPNVTAPVYSHLIYDVIPDGDKTVVQPDI 187
Query: 152 ILLEGILVF-------HDSR---VRELMNMKIFVDTDADVRLARRIRR------------ 189
++LEG+ V HD V + ++ I+VD D+ I R
Sbjct: 188 LILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 247
Query: 190 -------DTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 236
+ K I T + + + ILPT++ A +I+ + ++ V
Sbjct: 248 DSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHAV 301
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 48 PFVIGVAGGAASGKTT---VCDMIIQQLHDQ-RVVLVNQDSF-YHNLTEQELARVHEYNF 102
P++IG+AG A GK+T V ++ + D V ++ D F Y N ++ + F
Sbjct: 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGF 151
Query: 103 DHPDAFDTEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161
P+++D LL + ++ GQ V IP Y Y V+ D+++LEG+ +
Sbjct: 152 --PESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQ 209
Query: 162 DSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDD 215
+ L +++FV D L + ++K +D+ F + F D
Sbjct: 210 TGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKW-----YIDRVLSFWRTTFKD 258
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 47/234 (20%)
Query: 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQL-----HDQRVVLVNQDSFYH-NLTEQELAR 96
N R P++I +AG A GK+T ++Q L +RV L+ D F H N +E
Sbjct: 83 NGQRIPYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL 141
Query: 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPA-----RRVNPSDV 151
+ F P+++D +L+ + L+ G +PN Y + ++ + V D+
Sbjct: 142 XKKKGF--PESYDXHRLVKFVSDLKSG----VPNVTAPVYSHLIYDVIPDGDKTVVQPDI 195
Query: 152 ILLEGILVF-------HDSR---VRELMNMKIFVDTDADVRLARRIRR------------ 189
++LEG+ V HD V + ++ I+VD D+ I R
Sbjct: 196 LILEGLNVLQSGXDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 255
Query: 190 -------DTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 236
+ K I T + + ILPT++ A +I+ + ++ V
Sbjct: 256 DSYFHNYAKLTKEEAIKTAXTLWKEINWLNLKQNILPTRERASLILTKSANHAV 309
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 48 PFVIGVAGGAASGKTTVCDMIIQQL----HDQRVVLVNQDSF-YHNLTEQELARVHEYNF 102
PF+IGVAG A GK+T ++ L H RV LV D F Y N Q +H F
Sbjct: 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 149
Query: 103 DHPDAFDTEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARR--VNPSDVILLEGILV 159
P++++ L+ + ++ G P Y Y ++ P V D+++LEG+ V
Sbjct: 150 --PESYNRRALMRFVTSVKSGSDYAXAPVYSHLHY--DIIPGAEQVVRHPDILILEGLNV 205
Query: 160 FHDS---RVRELMNMKIFVDT 177
V +L + ++VD
Sbjct: 206 LQTGPTLMVSDLFDFSLYVDA 226
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 48 PFVIGVAGGAASGKTTVCDMIIQQL----HDQRVVLVNQDSF-YHNLTEQELARVHEYNF 102
PF+IGVAG A GK+T ++ L H RV LV D F Y N Q +H F
Sbjct: 100 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 159
Query: 103 DHPDAFDTEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARR--VNPSDVILLEGILV 159
P++++ L+ + ++ G P Y Y ++ P V D+++LEG+ V
Sbjct: 160 --PESYNRRALMRFVTSVKSGSDYACAPVYSHLHY--DIIPGAEQVVRHPDILILEGLNV 215
Query: 160 FHDS---RVRELMNMKIFVDT 177
V +L + ++VD
Sbjct: 216 LQTGPTLMVSDLFDFSLYVDA 236
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 48 PFVIGVAGGAASGKTTVCDMIIQQL----HDQRVVLVNQDSF-YHNLTEQELARVHEYNF 102
PF+IGVAG A GK+T ++ L H RV LV D F Y N Q +H F
Sbjct: 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 149
Query: 103 DHPDAFDTEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARR--VNPSDVILLEGILV 159
P++++ L+ + ++ G P Y Y ++ P V D+++LEG+ V
Sbjct: 150 --PESYNRRALMRFVTSVKSGSDYACAPVYSHLHY--DIIPGAEQVVRHPDILILEGLNV 205
Query: 160 FHDS---RVRELMNMKIFVDT 177
V +L + ++VD
Sbjct: 206 LQTGPTLMVSDLFDFSLYVDA 226
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVV---------LVNQDSFYHNLTEQELARVHE 99
V+G+ G + SGKTT+ + + Q L +Q + +V + YH E+ E
Sbjct: 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHXDDHIVERAKRYHTGNEEWF----E 78
Query: 100 YNFDHPDAFDTEKLLSSM-EKLRHGQAVDIPNYDFKS---YKNNVFPARRVNPSDVILLE 155
Y + +D E L + +L+ + +P YD ++ K V+ ++ SD I +E
Sbjct: 79 YYYLQ---WDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVY----LSDSDXIXIE 131
Query: 156 GILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDD 215
G+ + R + +++D ++R AR D V++ +I +++Y K +D
Sbjct: 132 GVFL-QRKEWRPFFDFVVYLDCPREIRFAR--ENDQVKQ--NIQKFINRYWK-----AED 181
Query: 216 FILPTK---KYADIII 228
+ L T+ K AD++
Sbjct: 182 YYLETEEPIKRADVVF 197
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAF 108
F+IG++G SGKTT+ + Q H +++QD F+ +E E + +D +A
Sbjct: 22 FIIGISGVTNSGKTTLAKNL--QKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEAL 79
Query: 109 DTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168
+ EK S++ + + D +S A + ++++EG L+F+ + +
Sbjct: 80 NXEKXXSAISCWXESARHSVVSTDQES-------AEEI---PILIIEGFLLFNYKPLDTI 129
Query: 169 MNMKIFVDTDADVRLARRIRR 189
N F+ + RR R
Sbjct: 130 WNRSYFLTIPYEECKRRRSTR 150
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide (Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAF 108
F+IG++G SGKTT+ + Q H +++QD F+ +E E + +D +A
Sbjct: 4 FIIGISGVTNSGKTTLAKNL--QKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEAL 61
Query: 109 DTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168
+ EK S++ + + D +S A + ++++EG L+F+ + +
Sbjct: 62 NXEKXXSAISCWXESARHSVVSTDQES-------AEEI---PILIIEGFLLFNYKPLDTI 111
Query: 169 MNMKIFVDTDADVRLARRIRR 189
N F+ + RR R
Sbjct: 112 WNRSYFLTIPYEECKRRRSTR 132
>pdb|2XZM|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|H Chain H, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 130
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166
D+P DF+ + NN+ P+R+ + GIL + R R
Sbjct: 80 DVPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKR 119
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT 90
+ IG+ GG SGKTTV D+ + LV+ D H +T
Sbjct: 10 YAIGLTGGIGSGKTTVADLFAARGAS----LVDTDLIAHRIT 47
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 50 VIGVAGGAASGKTTVCDMIIQQLH 73
VI V GG SGK T C+ ++Q+ H
Sbjct: 31 VIFVLGGPGSGKGTQCEKLVQKFH 54
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 47 QPFVIGVAGGAASGKTTVCDMIIQQ-----------LHDQRVVLVNQDSFYHNLTEQ 92
+P V+ V GG +GK T C I+++ L D+R N DS Y L E+
Sbjct: 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER---KNPDSQYGELIEK 55
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ 92
VIGV G +GK+TVC+++ + +VN D H + E+
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAH---VVNVDRIGHEVLEE 53
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 50 VIGVAGGAASGKTTVCDMIIQQL-HDQRVVLVN 81
VI VAG SGKTT+ ++Q++ DQR++ +
Sbjct: 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 49 FVIGVAGGAASGKTTVCDM 67
+++G+ GG SGKTT+ ++
Sbjct: 3 YIVGLTGGIGSGKTTIANL 21
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human
Pathogen Streptococcus Pneumoniae
Length = 253
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85
+++ + +QP I + G + +GKTT+ I Q+ +V+++ DSF
Sbjct: 21 SLTRGKKSSKQPIAILLGGQSGAGKTTI-HRIKQKEFQGNIVIIDGDSF 68
>pdb|3IZB|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|N Chain N, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|N Chain N, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|U Chain U, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|U Chain U, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 121
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 163 SRVRELMNMKI---FVDTDADVRLARRIRRDTVEKGRDIATVL 202
S+ E M+I ++D +A V++ +RI + T+E G D+ V+
Sbjct: 76 SKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVV 118
>pdb|1S1H|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 100
Score = 28.1 bits (61), Expect = 5.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 163 SRVRELMNMKI---FVDTDADVRLARRIRRDTVEKGRDIATV 201
S+ E M+I ++D +A V++ +RI + T+E G D+ V
Sbjct: 56 SKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVV 97
>pdb|3IWT|A Chain A, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|B Chain B, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|C Chain C, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
Length = 178
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 157 ILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI---ATVLDQYSKFVKPAF 213
++ SR +L+ + VD D+ I++ +E G I + V D K +K AF
Sbjct: 20 VITISTSRYEKLLKKEPIVDESGDI-----IKQLLIENGHKIIGYSLVPDDKIKILK-AF 73
Query: 214 DDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246
D + + D+II GG + D+ V+ IR
Sbjct: 74 TDAL--SIDEVDVIISTGGTGYSPTDITVETIR 104
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE-QELARVHEYNFDHPDAFD 109
I + GGA + V II+ D VV +++ ++ NL +++ + YNF+H D D
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDT-VVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 110 TEKLLSSMEKLR 121
+ ++ E+ +
Sbjct: 62 SAEITRIFEQYQ 73
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 178 DADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVA 237
+++ LA+ I E G TV Q + A ++ +Y D+I+PRGG +
Sbjct: 176 ESNTALAKLIGEGLAEAGLPQDTV--QVVETADRAAVGRLITMTEYVDVIVPRGGKS--L 231
Query: 238 IDLIVQHIRTKLGQH--DLCKIY 258
I+ ++ R + +H +C +Y
Sbjct: 232 IERLINEARVPMIKHLDGICHVY 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,054,244
Number of Sequences: 62578
Number of extensions: 380442
Number of successful extensions: 1022
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 32
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)