Query 022073
Match_columns 303
No_of_seqs 287 out of 2651
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0572 Udk Uridine kinase [Nu 100.0 1.4E-39 3.1E-44 267.8 18.1 206 46-252 6-211 (218)
2 PTZ00301 uridine kinase; Provi 100.0 4.5E-35 9.7E-40 245.0 20.6 203 48-251 3-209 (210)
3 KOG4203 Armadillo/beta-Catenin 100.0 4.6E-33 9.9E-38 256.9 12.4 256 45-300 41-305 (473)
4 PRK05480 uridine/cytidine kina 100.0 1.9E-30 4E-35 219.0 20.8 205 45-250 3-207 (209)
5 PF00485 PRK: Phosphoribulokin 100.0 9.4E-32 2E-36 224.2 12.0 184 50-235 1-192 (194)
6 cd02029 PRK_like Phosphoribulo 100.0 5.9E-30 1.3E-34 217.2 17.0 178 50-229 1-200 (277)
7 TIGR00235 udk uridine kinase. 100.0 1.5E-29 3.3E-34 213.1 19.1 204 45-249 3-206 (207)
8 cd02023 UMPK Uridine monophosp 100.0 2.3E-29 4.9E-34 210.7 18.8 196 50-246 1-196 (198)
9 PLN02318 phosphoribulokinase/u 100.0 6.4E-30 1.4E-34 236.8 15.8 217 45-270 62-291 (656)
10 cd02025 PanK Pantothenate kina 100.0 3.7E-28 8.1E-33 205.6 15.6 183 50-234 1-213 (220)
11 PLN02348 phosphoribulokinase 100.0 7.1E-28 1.5E-32 215.1 15.2 219 45-268 46-281 (395)
12 PRK15453 phosphoribulokinase; 100.0 3.9E-27 8.6E-32 201.6 18.6 182 46-229 3-206 (290)
13 PRK05439 pantothenate kinase; 99.9 5.9E-27 1.3E-31 205.5 15.9 188 45-234 83-301 (311)
14 TIGR00554 panK_bact pantothena 99.9 1E-26 2.3E-31 202.7 16.8 187 45-233 59-280 (290)
15 cd02028 UMPK_like Uridine mono 99.9 1.4E-26 3.1E-31 190.1 15.0 174 50-229 1-178 (179)
16 PRK07429 phosphoribulokinase; 99.9 3.7E-25 8.1E-30 196.7 16.7 218 45-267 5-222 (327)
17 cd02026 PRK Phosphoribulokinas 99.9 2.2E-24 4.7E-29 188.0 16.9 177 50-231 1-177 (273)
18 cd02024 NRK1 Nicotinamide ribo 99.9 2E-23 4.3E-28 171.2 11.5 164 50-215 1-178 (187)
19 PRK06696 uridine kinase; Valid 99.9 1.1E-22 2.4E-27 173.1 14.7 181 45-232 19-211 (223)
20 PRK09270 nucleoside triphospha 99.9 4.9E-22 1.1E-26 169.8 17.8 187 45-235 30-225 (229)
21 PRK07667 uridine kinase; Provi 99.9 2.2E-21 4.7E-26 161.5 13.2 173 45-229 14-193 (193)
22 COG1072 CoaA Panthothenate kin 99.8 1E-18 2.3E-23 147.7 14.4 145 45-191 79-233 (283)
23 PRK08233 hypothetical protein; 99.8 2E-18 4.3E-23 142.3 15.8 173 47-251 2-177 (182)
24 PRK06547 hypothetical protein; 99.8 1.4E-17 3E-22 135.5 12.8 153 45-229 12-171 (172)
25 PRK14733 coaE dephospho-CoA ki 99.7 2.2E-18 4.7E-23 143.3 6.2 167 46-232 4-182 (204)
26 PRK14730 coaE dephospho-CoA ki 99.7 1.7E-18 3.6E-23 144.1 5.0 177 49-247 2-190 (195)
27 PRK00081 coaE dephospho-CoA ki 99.7 3.4E-18 7.5E-23 142.3 6.0 167 48-233 2-179 (194)
28 PF01121 CoaE: Dephospho-CoA k 99.7 2.6E-19 5.5E-24 146.4 -1.4 166 49-233 1-177 (180)
29 PRK14732 coaE dephospho-CoA ki 99.7 2.9E-18 6.3E-23 142.5 4.6 166 50-234 1-177 (196)
30 cd02022 DPCK Dephospho-coenzym 99.7 2.6E-18 5.6E-23 141.3 3.7 165 50-233 1-176 (179)
31 PLN02422 dephospho-CoA kinase 99.7 6.2E-18 1.4E-22 142.9 5.6 170 49-235 2-182 (232)
32 PLN03046 D-glycerate 3-kinase; 99.7 3.2E-16 7E-21 140.8 15.1 117 45-163 209-345 (460)
33 PTZ00451 dephospho-CoA kinase; 99.7 1.9E-17 4.1E-22 141.3 6.2 174 48-235 1-195 (244)
34 PRK14734 coaE dephospho-CoA ki 99.7 2.3E-17 4.9E-22 137.8 5.1 170 49-235 2-182 (200)
35 PRK14731 coaE dephospho-CoA ki 99.7 1E-16 2.2E-21 134.9 6.6 167 46-235 3-190 (208)
36 COG0237 CoaE Dephospho-CoA kin 99.7 5E-17 1.1E-21 134.7 4.6 172 48-245 2-190 (201)
37 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 4.2E-17 9E-22 138.3 3.8 170 21-207 5-201 (254)
38 KOG3308 Uncharacterized protei 99.7 2.4E-16 5.3E-21 126.7 7.3 177 47-231 3-187 (225)
39 PRK13477 bifunctional pantoate 99.6 6.5E-16 1.4E-20 144.3 10.6 202 15-246 266-502 (512)
40 PLN02796 D-glycerate 3-kinase 99.6 4.9E-15 1.1E-19 131.2 15.5 117 45-163 97-233 (347)
41 COG1120 FepC ABC-type cobalami 99.6 4E-17 8.6E-22 139.1 2.2 170 22-207 4-201 (258)
42 KOG3220 Similar to bacterial d 99.6 4.7E-17 1E-21 130.8 1.7 159 48-235 1-182 (225)
43 COG1131 CcmA ABC-type multidru 99.6 2.2E-16 4.9E-21 139.3 3.0 141 11-166 6-172 (293)
44 COG1126 GlnQ ABC-type polar am 99.6 7.5E-16 1.6E-20 125.9 5.7 144 9-167 2-173 (240)
45 COG1102 Cmk Cytidylate kinase 99.6 5.3E-15 1.1E-19 115.3 9.9 156 49-241 1-165 (179)
46 COG4555 NatA ABC-type Na+ tran 99.6 9.5E-17 2.1E-21 129.5 0.1 141 9-164 1-167 (245)
47 PRK03333 coaE dephospho-CoA ki 99.6 9.4E-16 2E-20 140.6 5.6 181 49-248 2-193 (395)
48 COG2274 SunT ABC-type bacterio 99.6 6.8E-16 1.5E-20 149.8 3.5 146 19-164 470-643 (709)
49 TIGR00152 dephospho-CoA kinase 99.6 1.2E-15 2.5E-20 126.6 4.0 167 50-233 1-178 (188)
50 COG4240 Predicted kinase [Gene 99.6 1.2E-14 2.7E-19 119.1 9.7 118 45-164 47-178 (300)
51 COG0283 Cmk Cytidylate kinase 99.5 6.1E-14 1.3E-18 114.9 10.8 182 48-248 4-216 (222)
52 KOG2702 Predicted panthothenat 99.5 1.7E-13 3.8E-18 112.6 11.7 146 45-192 116-282 (323)
53 COG1428 Deoxynucleoside kinase 99.5 8.8E-15 1.9E-19 119.5 4.0 199 48-250 4-211 (216)
54 KOG0058 Peptide exporter, ABC 99.5 1.1E-14 2.4E-19 137.5 4.9 176 19-229 464-674 (716)
55 COG1127 Ttg2A ABC-type transpo 99.5 2.8E-14 6.1E-19 118.5 6.5 142 7-164 6-179 (263)
56 COG2884 FtsE Predicted ATPase 99.5 8.2E-14 1.8E-18 111.6 8.5 144 21-165 2-172 (223)
57 COG1116 TauB ABC-type nitrate/ 99.5 2.7E-14 5.8E-19 119.8 5.9 138 15-167 10-167 (248)
58 cd02020 CMPK Cytidine monophos 99.5 2.5E-13 5.4E-18 107.8 11.2 144 50-230 1-146 (147)
59 PRK11176 lipid transporter ATP 99.5 1.7E-14 3.7E-19 139.8 4.7 140 20-164 341-514 (582)
60 COG1124 DppF ABC-type dipeptid 99.5 7.4E-14 1.6E-18 116.3 7.0 139 11-164 5-175 (252)
61 COG4604 CeuD ABC-type enteroch 99.5 5.1E-14 1.1E-18 113.4 5.4 162 15-205 8-196 (252)
62 COG1122 CbiO ABC-type cobalt t 99.5 6.5E-14 1.4E-18 119.1 5.6 144 21-165 4-173 (235)
63 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 1.5E-14 3.3E-19 143.1 2.0 140 19-164 476-649 (710)
64 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 2.8E-14 6.1E-19 140.7 3.7 139 19-164 450-622 (686)
65 COG3839 MalK ABC-type sugar tr 99.5 1.2E-13 2.5E-18 122.4 7.1 153 15-182 10-197 (338)
66 cd03259 ABC_Carb_Solutes_like 99.4 2E-14 4.2E-19 121.6 1.7 121 44-164 22-164 (213)
67 TIGR02203 MsbA_lipidA lipid A 99.4 5.7E-14 1.2E-18 135.8 5.0 141 19-164 329-503 (571)
68 TIGR02857 CydD thiol reductant 99.4 2E-14 4.4E-19 137.7 1.6 141 18-164 318-492 (529)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 7.4E-14 1.6E-18 118.5 4.9 128 37-164 19-174 (218)
70 TIGR03375 type_I_sec_LssB type 99.4 1.7E-14 3.6E-19 142.4 0.9 140 19-164 462-635 (694)
71 TIGR02868 CydC thiol reductant 99.4 3.5E-14 7.5E-19 136.0 3.0 140 18-164 332-504 (529)
72 TIGR00960 3a0501s02 Type II (G 99.4 6.8E-14 1.5E-18 118.6 4.1 127 38-164 19-172 (216)
73 cd03225 ABC_cobalt_CbiO_domain 99.4 8.9E-14 1.9E-18 117.4 4.8 120 45-164 24-168 (211)
74 PRK13537 nodulation ABC transp 99.4 6.9E-14 1.5E-18 124.6 4.2 141 10-165 8-173 (306)
75 cd03293 ABC_NrtD_SsuB_transpor 99.4 2.7E-14 5.9E-19 121.4 1.5 123 42-164 24-165 (220)
76 PRK11629 lolD lipoprotein tran 99.4 1.2E-13 2.7E-18 118.4 5.2 143 22-164 7-179 (233)
77 PRK11174 cysteine/glutathione 99.4 3.7E-14 8E-19 137.5 2.0 139 19-164 348-519 (588)
78 cd03246 ABCC_Protease_Secretio 99.4 1.1E-13 2.4E-18 113.2 4.5 127 23-164 3-130 (173)
79 PRK11160 cysteine/glutathione 99.4 6.9E-14 1.5E-18 135.1 3.8 140 19-164 337-509 (574)
80 COG3638 ABC-type phosphate/pho 99.4 5.5E-13 1.2E-17 110.6 8.3 142 22-165 5-182 (258)
81 COG1136 SalX ABC-type antimicr 99.4 8.9E-14 1.9E-18 116.4 3.5 119 45-164 28-176 (226)
82 cd03295 ABC_OpuCA_Osmoprotecti 99.4 5E-14 1.1E-18 121.5 2.1 125 40-164 19-169 (242)
83 PRK13536 nodulation factor exp 99.4 1.2E-13 2.6E-18 124.5 4.3 143 21-165 42-207 (340)
84 cd03263 ABC_subfamily_A The AB 99.4 1.4E-13 3.1E-18 116.9 4.6 127 38-164 18-167 (220)
85 PRK06762 hypothetical protein; 99.4 1.4E-11 3E-16 100.0 16.0 153 48-249 2-162 (166)
86 TIGR02211 LolD_lipo_ex lipopro 99.4 7.2E-14 1.6E-18 118.8 2.6 128 37-164 20-175 (221)
87 TIGR02314 ABC_MetN D-methionin 99.4 5.9E-14 1.3E-18 126.4 2.1 143 22-165 3-175 (343)
88 COG0411 LivG ABC-type branched 99.4 4.9E-14 1.1E-18 117.5 1.4 140 9-164 4-183 (250)
89 PRK01184 hypothetical protein; 99.4 1.7E-12 3.6E-17 107.2 10.6 160 48-234 1-165 (184)
90 PRK08118 topology modulation p 99.4 3.3E-12 7.1E-17 103.7 12.1 100 49-191 2-101 (167)
91 cd03228 ABCC_MRP_Like The MRP 99.4 1.9E-13 4.1E-18 111.6 4.7 110 40-164 20-130 (171)
92 COG0410 LivF ABC-type branched 99.4 1.7E-13 3.6E-18 113.4 4.2 143 9-166 3-172 (237)
93 TIGR02673 FtsE cell division A 99.4 1.8E-13 3.8E-18 115.9 4.5 121 44-164 24-171 (214)
94 COG4988 CydD ABC-type transpor 99.4 2.1E-13 4.6E-18 126.4 5.3 173 21-229 321-526 (559)
95 PRK11153 metN DL-methionine tr 99.4 6.5E-14 1.4E-18 126.6 1.9 142 23-165 4-175 (343)
96 PRK10584 putative ABC transpor 99.4 1.6E-13 3.5E-18 117.3 3.9 122 43-164 31-180 (228)
97 PRK13657 cyclic beta-1,2-gluca 99.4 7.6E-14 1.6E-18 135.3 2.0 138 20-164 334-505 (588)
98 PRK11432 fbpC ferric transport 99.4 8.4E-14 1.8E-18 125.9 1.7 137 15-166 13-172 (351)
99 cd03233 ABC_PDR_domain1 The pl 99.4 1.7E-13 3.7E-18 114.9 3.4 144 20-165 3-153 (202)
100 PRK13632 cbiO cobalt transport 99.4 2.3E-13 5.1E-18 119.3 4.4 144 21-164 8-176 (271)
101 COG1134 TagH ABC-type polysacc 99.4 1.1E-12 2.4E-17 109.6 8.0 130 23-167 43-184 (249)
102 cd03261 ABC_Org_Solvent_Resist 99.4 9.7E-14 2.1E-18 119.2 1.9 122 43-164 21-170 (235)
103 PRK09452 potA putrescine/sperm 99.4 7.1E-14 1.5E-18 127.3 1.1 127 40-166 32-180 (375)
104 cd03258 ABC_MetN_methionine_tr 99.4 9.9E-14 2.2E-18 118.9 1.9 127 37-164 20-174 (233)
105 cd03296 ABC_CysA_sulfate_impor 99.4 2.7E-13 5.8E-18 116.7 4.6 129 37-165 17-171 (239)
106 TIGR00958 3a01208 Conjugate Tr 99.4 1.8E-13 3.9E-18 135.2 3.9 140 19-164 477-651 (711)
107 TIGR03265 PhnT2 putative 2-ami 99.4 8E-14 1.7E-18 126.2 1.3 136 15-165 11-169 (353)
108 PLN03130 ABC transporter C fam 99.4 1.5E-13 3.2E-18 145.3 3.1 139 19-164 1236-1408(1622)
109 PRK13635 cbiO cobalt transport 99.4 3.1E-13 6.8E-18 118.9 4.7 143 22-164 7-174 (279)
110 PRK11248 tauB taurine transpor 99.4 7.8E-14 1.7E-18 121.1 0.8 121 45-165 24-163 (255)
111 TIGR02315 ABC_phnC phosphonate 99.4 2.1E-13 4.5E-18 117.7 3.4 127 38-164 18-179 (243)
112 TIGR01288 nodI ATP-binding ABC 99.4 2.7E-13 5.8E-18 120.8 4.1 121 45-165 27-170 (303)
113 COG1132 MdlB ABC-type multidru 99.4 1.1E-13 2.5E-18 133.5 1.9 166 19-207 327-526 (567)
114 cd03269 ABC_putative_ATPase Th 99.4 2.7E-13 5.7E-18 114.4 3.9 121 44-164 22-162 (210)
115 PRK10790 putative multidrug tr 99.4 9.7E-14 2.1E-18 134.7 1.4 138 19-164 339-510 (592)
116 cd03292 ABC_FtsE_transporter F 99.4 3E-13 6.5E-18 114.4 4.1 124 40-164 19-170 (214)
117 COG1117 PstB ABC-type phosphat 99.4 7.1E-13 1.5E-17 108.2 6.0 123 41-163 26-182 (253)
118 TIGR01188 drrA daunorubicin re 99.4 3.5E-13 7.5E-18 120.0 4.6 133 18-165 3-159 (302)
119 cd03265 ABC_DrrA DrrA is the A 99.4 3.2E-13 6.9E-18 114.8 4.1 121 44-164 22-165 (220)
120 cd03266 ABC_NatA_sodium_export 99.4 3.1E-13 6.7E-18 114.7 4.0 128 37-164 20-170 (218)
121 PLN03232 ABC transporter C fam 99.4 1.7E-13 3.7E-18 144.5 2.8 165 19-206 1233-1431(1495)
122 cd03226 ABC_cobalt_CbiO_domain 99.4 7.1E-13 1.5E-17 111.4 6.0 120 42-165 20-161 (205)
123 PRK06217 hypothetical protein; 99.4 8.5E-12 1.8E-16 103.0 12.3 105 49-191 2-106 (183)
124 PRK09536 btuD corrinoid ABC tr 99.4 1.6E-13 3.4E-18 125.9 2.1 127 38-164 19-173 (402)
125 COG1125 OpuBA ABC-type proline 99.4 2E-12 4.3E-17 108.3 8.4 154 15-184 8-201 (309)
126 PRK11650 ugpC glycerol-3-phosp 99.4 1.3E-13 2.8E-18 125.0 1.4 122 45-166 27-170 (356)
127 PRK13634 cbiO cobalt transport 99.4 1.4E-13 3.1E-18 121.7 1.6 145 21-165 3-180 (290)
128 PRK11831 putative ABC transpor 99.4 1.1E-13 2.5E-18 121.1 0.9 144 6-164 4-177 (269)
129 TIGR00017 cmk cytidylate kinas 99.4 1.4E-12 3E-17 110.2 7.4 187 48-246 2-214 (217)
130 PTZ00265 multidrug resistance 99.4 2E-13 4.4E-18 143.0 2.7 169 19-207 1164-1421(1466)
131 COG3840 ThiQ ABC-type thiamine 99.4 1.7E-12 3.8E-17 103.4 7.3 138 22-167 3-166 (231)
132 PRK13648 cbiO cobalt transport 99.4 5.4E-13 1.2E-17 116.9 4.9 144 21-165 8-177 (269)
133 COG3842 PotA ABC-type spermidi 99.4 6E-13 1.3E-17 118.5 5.2 155 15-184 12-202 (352)
134 PRK10522 multidrug transporter 99.4 2.2E-13 4.7E-18 130.9 2.7 145 18-164 320-483 (547)
135 PRK13637 cbiO cobalt transport 99.4 2.2E-13 4.8E-18 120.3 2.5 144 22-165 4-179 (287)
136 cd03289 ABCC_CFTR2 The CFTR su 99.4 6E-13 1.3E-17 116.5 5.1 144 20-164 2-172 (275)
137 cd03229 ABC_Class3 This class 99.4 1.9E-13 4.2E-18 112.3 1.8 111 43-164 21-134 (178)
138 cd03257 ABC_NikE_OppD_transpor 99.4 2.9E-13 6.2E-18 115.6 3.0 128 37-164 20-179 (228)
139 COG1118 CysA ABC-type sulfate/ 99.4 1.1E-12 2.3E-17 112.7 6.3 154 15-183 9-202 (345)
140 PRK10789 putative multidrug tr 99.4 4.6E-13 1E-17 129.3 4.7 139 20-164 313-485 (569)
141 cd03301 ABC_MalK_N The N-termi 99.4 4.7E-13 1E-17 113.2 4.2 123 42-164 20-164 (213)
142 cd03224 ABC_TM1139_LivF_branch 99.4 4.6E-13 1E-17 113.9 4.2 123 40-164 18-166 (222)
143 PRK13650 cbiO cobalt transport 99.4 4.6E-13 1E-17 117.8 4.2 142 22-164 6-174 (279)
144 cd03256 ABC_PhnC_transporter A 99.4 2.8E-13 6.1E-18 116.7 2.8 120 45-164 24-178 (241)
145 cd03244 ABCC_MRP_domain2 Domai 99.4 6.5E-13 1.4E-17 112.9 4.8 143 21-164 3-173 (221)
146 PRK11000 maltose/maltodextrin 99.4 1.6E-13 3.4E-18 125.2 1.1 123 43-165 24-168 (369)
147 COG4619 ABC-type uncharacteriz 99.4 2.5E-12 5.3E-17 101.2 7.5 127 37-164 18-167 (223)
148 KOG0055 Multidrug/pheromone ex 99.3 2.3E-13 5E-18 135.6 2.1 173 17-207 347-550 (1228)
149 TIGR02204 MsbA_rel ABC transpo 99.3 3.6E-13 7.9E-18 130.4 3.4 139 20-164 337-510 (576)
150 PRK00023 cmk cytidylate kinase 99.3 3.5E-12 7.5E-17 108.5 9.0 185 48-248 4-222 (225)
151 COG4987 CydC ABC-type transpor 99.3 1.1E-12 2.4E-17 120.2 6.1 170 20-207 336-535 (573)
152 cd03294 ABC_Pro_Gly_Bertaine T 99.3 2.4E-13 5.2E-18 119.0 1.9 135 15-164 31-194 (269)
153 TIGR02770 nickel_nikD nickel i 99.3 2.4E-13 5.3E-18 116.3 1.9 120 45-164 9-159 (230)
154 cd03235 ABC_Metallic_Cations A 99.3 7E-13 1.5E-17 112.1 4.6 120 45-164 22-166 (213)
155 cd03219 ABC_Mj1267_LivG_branch 99.3 6.5E-13 1.4E-17 114.1 4.5 123 42-164 20-177 (236)
156 TIGR03522 GldA_ABC_ATP gliding 99.3 5.1E-13 1.1E-17 118.8 3.9 121 45-165 25-168 (301)
157 cd03218 ABC_YhbG The ABC trans 99.3 6.9E-13 1.5E-17 113.6 4.6 120 45-164 23-167 (232)
158 cd03247 ABCC_cytochrome_bd The 99.3 3.9E-13 8.5E-18 110.4 2.9 129 23-164 3-132 (178)
159 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 5.6E-13 1.2E-17 114.5 3.9 121 44-164 23-166 (236)
160 cd03245 ABCC_bacteriocin_expor 99.3 9E-13 2E-17 112.0 5.2 143 21-164 3-174 (220)
161 PRK04182 cytidylate kinase; Pr 99.3 3.4E-12 7.4E-17 104.8 8.4 166 49-247 1-173 (180)
162 PRK13640 cbiO cobalt transport 99.3 7.2E-13 1.6E-17 116.8 4.6 144 21-165 6-178 (282)
163 PRK10418 nikD nickel transport 99.3 9.3E-13 2E-17 114.4 5.3 124 39-164 20-174 (254)
164 COG4152 ABC-type uncharacteriz 99.3 1.6E-13 3.4E-18 114.1 0.3 134 15-164 9-164 (300)
165 TIGR01193 bacteriocin_ABC ABC- 99.3 3.8E-13 8.2E-18 133.1 3.1 140 19-164 472-645 (708)
166 TIGR03410 urea_trans_UrtE urea 99.3 2.7E-13 5.8E-18 116.1 1.6 120 44-164 22-165 (230)
167 cd03230 ABC_DR_subfamily_A Thi 99.3 4.4E-13 9.5E-18 109.6 2.9 110 41-164 19-129 (173)
168 PRK11860 bifunctional 3-phosph 99.3 3.5E-12 7.6E-17 124.7 9.5 184 47-246 441-654 (661)
169 TIGR03258 PhnT 2-aminoethylpho 99.3 7.8E-13 1.7E-17 120.1 4.5 144 20-165 5-172 (362)
170 KOG0055 Multidrug/pheromone ex 99.3 9.4E-13 2E-17 131.4 5.4 183 16-229 983-1196(1228)
171 TIGR01166 cbiO cobalt transpor 99.3 7.5E-13 1.6E-17 109.9 4.0 128 22-164 7-161 (190)
172 TIGR01846 type_I_sec_HlyB type 99.3 2.4E-13 5.2E-18 134.2 1.2 140 19-164 454-627 (694)
173 COG1129 MglA ABC-type sugar tr 99.3 9.6E-13 2.1E-17 121.5 5.1 140 9-163 8-178 (500)
174 cd03260 ABC_PstB_phosphate_tra 99.3 1.4E-12 3E-17 111.4 5.7 126 39-164 17-175 (227)
175 TIGR01842 type_I_sec_PrtD type 99.3 6.8E-13 1.5E-17 127.5 4.2 140 19-164 315-488 (544)
176 TIGR00968 3a0106s01 sulfate AB 99.3 3.2E-13 7E-18 116.1 1.8 126 39-164 17-164 (237)
177 cd03268 ABC_BcrA_bacitracin_re 99.3 9.8E-13 2.1E-17 110.8 4.7 124 37-164 15-160 (208)
178 PRK14250 phosphate ABC transpo 99.3 5.7E-13 1.2E-17 114.8 3.3 127 37-164 18-165 (241)
179 cd03297 ABC_ModC_molybdenum_tr 99.3 1E-12 2.2E-17 111.2 4.7 135 11-164 3-165 (214)
180 PRK10070 glycine betaine trans 99.3 3.2E-13 6.9E-18 123.8 1.6 121 45-165 51-199 (400)
181 PRK10247 putative ABC transpor 99.3 1.4E-12 3E-17 111.2 5.4 119 44-164 29-171 (225)
182 TIGR02173 cyt_kin_arch cytidyl 99.3 5.1E-12 1.1E-16 102.9 8.5 153 49-234 1-159 (171)
183 cd03264 ABC_drug_resistance_li 99.3 6.5E-13 1.4E-17 112.2 3.3 118 44-164 22-164 (211)
184 KOG0056 Heavy metal exporter H 99.3 2E-12 4.4E-17 117.0 6.5 184 5-206 521-734 (790)
185 PRK10575 iron-hydroxamate tran 99.3 4.2E-13 9.1E-18 117.3 2.1 142 21-164 12-181 (265)
186 cd03298 ABC_ThiQ_thiamine_tran 99.3 5.1E-13 1.1E-17 112.8 2.5 125 40-164 16-162 (211)
187 PRK00131 aroK shikimate kinase 99.3 1.1E-11 2.4E-16 101.1 10.4 162 46-246 2-170 (175)
188 PRK13548 hmuV hemin importer A 99.3 4.1E-13 9E-18 116.8 2.0 121 44-164 24-174 (258)
189 PRK13643 cbiO cobalt transport 99.3 1.1E-12 2.4E-17 115.9 4.7 144 22-165 3-179 (288)
190 COG1135 AbcC ABC-type metal io 99.3 3.8E-12 8.3E-17 109.5 7.6 151 38-189 22-211 (339)
191 PRK13645 cbiO cobalt transport 99.3 4.1E-13 8.8E-18 118.8 1.7 145 20-164 6-184 (289)
192 PRK13636 cbiO cobalt transport 99.3 1.1E-12 2.5E-17 115.6 4.5 128 38-165 22-176 (283)
193 PRK13647 cbiO cobalt transport 99.3 9.6E-13 2.1E-17 115.5 4.0 127 37-164 20-172 (274)
194 TIGR01194 cyc_pep_trnsptr cycl 99.3 6.5E-13 1.4E-17 127.8 3.2 146 18-164 335-504 (555)
195 PRK13649 cbiO cobalt transport 99.3 1.3E-12 2.8E-17 115.1 4.8 144 22-165 4-180 (280)
196 PRK11247 ssuB aliphatic sulfon 99.3 6.6E-13 1.4E-17 115.3 2.9 137 21-165 13-168 (257)
197 PRK13652 cbiO cobalt transport 99.3 6.2E-13 1.4E-17 116.9 2.6 125 39-164 21-171 (277)
198 PRK09518 bifunctional cytidyla 99.3 7.3E-12 1.6E-16 123.5 10.4 190 49-251 2-235 (712)
199 cd03223 ABCD_peroxisomal_ALDP 99.3 1.5E-12 3.2E-17 105.8 4.5 107 39-164 18-125 (166)
200 PRK10771 thiQ thiamine transpo 99.3 4.9E-13 1.1E-17 114.6 1.5 124 41-164 18-163 (232)
201 PRK13646 cbiO cobalt transport 99.3 4.8E-13 1E-17 118.1 1.5 144 22-165 4-180 (286)
202 PRK10908 cell division protein 99.3 1.3E-12 2.9E-17 111.1 4.0 123 41-164 21-171 (222)
203 cd03250 ABCC_MRP_domain1 Domai 99.3 2.3E-12 5E-17 108.2 5.4 135 23-164 3-161 (204)
204 TIGR02769 nickel_nikE nickel i 99.3 6.3E-13 1.4E-17 116.2 2.1 126 39-164 28-184 (265)
205 PRK10851 sulfate/thiosulfate t 99.3 4.8E-13 1E-17 121.2 1.3 122 45-166 25-172 (353)
206 cd03262 ABC_HisP_GlnQ_permease 99.3 1.5E-12 3.3E-17 110.0 4.1 120 45-164 23-169 (213)
207 cd03213 ABCG_EPDR ABCG transpo 99.3 1.1E-12 2.5E-17 109.2 3.3 135 21-164 4-145 (194)
208 cd03232 ABC_PDR_domain2 The pl 99.3 1.2E-12 2.6E-17 108.9 3.4 134 21-164 4-142 (192)
209 PTZ00243 ABC transporter; Prov 99.3 1.1E-12 2.3E-17 138.6 3.8 165 19-206 1307-1506(1560)
210 cd03216 ABC_Carb_Monos_I This 99.3 7.1E-13 1.5E-17 107.3 1.7 113 23-164 3-116 (163)
211 TIGR01271 CFTR_protein cystic 99.3 1.4E-12 3E-17 137.5 4.3 165 19-206 1216-1413(1490)
212 PRK11607 potG putrescine trans 99.3 5.3E-13 1.2E-17 121.8 1.1 144 21-166 20-185 (377)
213 TIGR03608 L_ocin_972_ABC putat 99.3 1.8E-12 3.9E-17 109.0 4.2 120 45-164 21-168 (206)
214 TIGR00957 MRP_assoc_pro multi 99.3 5.8E-13 1.3E-17 140.7 1.3 166 19-207 1283-1482(1522)
215 PRK13641 cbiO cobalt transport 99.3 2E-12 4.3E-17 114.3 4.5 144 22-165 4-180 (287)
216 PRK13633 cobalt transporter AT 99.3 2.1E-12 4.6E-17 113.7 4.7 144 22-165 6-179 (280)
217 cd03369 ABCC_NFT1 Domain 2 of 99.3 4.1E-12 9E-17 106.9 6.2 132 21-164 7-159 (207)
218 cd03252 ABCC_Hemolysin The ABC 99.3 3.1E-12 6.8E-17 109.9 5.5 136 23-164 3-172 (237)
219 PRK14242 phosphate transporter 99.3 2.4E-12 5.3E-17 111.7 4.8 126 39-164 23-183 (253)
220 PRK07261 topology modulation p 99.3 7.5E-12 1.6E-16 102.0 7.3 105 50-197 2-107 (171)
221 PRK13538 cytochrome c biogenes 99.3 1.8E-12 3.8E-17 108.9 3.7 132 15-164 8-163 (204)
222 PRK14268 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 111.8 4.9 144 19-164 11-188 (258)
223 cd03215 ABC_Carb_Monos_II This 99.3 1.7E-12 3.6E-17 107.1 3.5 119 22-164 15-138 (182)
224 PRK13644 cbiO cobalt transport 99.3 1.8E-12 3.8E-17 113.9 3.8 127 37-164 17-170 (274)
225 PRK10078 ribose 1,5-bisphospho 99.3 6.5E-11 1.4E-15 98.0 12.8 125 48-190 2-132 (186)
226 PRK14258 phosphate ABC transpo 99.3 1.4E-12 2.9E-17 113.8 2.9 142 21-164 8-184 (261)
227 PRK11300 livG leucine/isoleuci 99.3 7.1E-13 1.5E-17 115.2 1.1 123 42-164 25-187 (255)
228 PRK09544 znuC high-affinity zi 99.3 8.8E-13 1.9E-17 114.2 1.7 121 37-164 19-154 (251)
229 PRK09984 phosphonate/organopho 99.3 9.7E-13 2.1E-17 114.8 2.0 120 45-164 27-186 (262)
230 TIGR01192 chvA glucan exporter 99.3 9.2E-13 2E-17 127.5 1.9 138 20-164 334-505 (585)
231 KOG0057 Mitochondrial Fe/S clu 99.3 2.3E-12 4.9E-17 118.3 4.2 167 19-207 350-548 (591)
232 TIGR03873 F420-0_ABC_ATP propo 99.3 3E-12 6.5E-17 111.4 4.9 129 37-165 16-172 (256)
233 PRK05541 adenylylsulfate kinas 99.3 3E-11 6.4E-16 99.1 10.5 41 45-85 4-46 (176)
234 TIGR01186 proV glycine betaine 99.3 1.1E-12 2.4E-17 118.9 2.1 133 17-165 2-164 (363)
235 TIGR00972 3a0107s01c2 phosphat 99.3 2.7E-12 5.9E-17 111.0 4.5 122 43-164 22-178 (247)
236 PRK11264 putative amino-acid A 99.3 3E-12 6.6E-17 110.9 4.8 124 41-164 22-178 (250)
237 cd03214 ABC_Iron-Siderophores_ 99.3 1.3E-12 2.9E-17 107.5 2.4 107 45-164 22-131 (180)
238 PRK13949 shikimate kinase; Pro 99.3 1E-11 2.2E-16 101.0 7.6 35 49-86 2-36 (169)
239 PRK04040 adenylate kinase; Pro 99.3 1.9E-11 4.2E-16 101.0 9.3 171 48-244 2-186 (188)
240 TIGR00954 3a01203 Peroxysomal 99.3 4.8E-12 1E-16 123.9 6.6 146 17-164 448-616 (659)
241 PRK13642 cbiO cobalt transport 99.3 2.6E-12 5.7E-17 112.9 4.3 145 21-165 5-175 (277)
242 cd03267 ABC_NatA_like Similar 99.3 1.3E-12 2.8E-17 112.3 2.2 127 23-164 37-187 (236)
243 COG4615 PvdE ABC-type sideroph 99.3 8.1E-12 1.8E-16 110.6 7.2 151 17-169 319-487 (546)
244 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 3.1E-12 6.8E-17 109.0 4.6 135 15-164 29-176 (224)
245 COG0703 AroK Shikimate kinase 99.3 1.1E-11 2.3E-16 99.2 7.2 156 49-246 3-167 (172)
246 PRK09473 oppD oligopeptide tra 99.3 8.1E-13 1.8E-17 118.7 0.9 125 40-165 34-196 (330)
247 PRK11022 dppD dipeptide transp 99.3 9.3E-13 2E-17 118.2 1.2 120 44-164 29-187 (326)
248 PRK05057 aroK shikimate kinase 99.3 7.7E-11 1.7E-15 96.2 12.4 158 48-245 4-169 (172)
249 PRK09493 glnQ glutamine ABC tr 99.3 2.6E-12 5.6E-17 110.7 3.9 120 45-164 24-170 (240)
250 PRK13651 cobalt transporter AT 99.3 2.9E-12 6.3E-17 114.0 4.3 144 22-165 4-200 (305)
251 PRK10744 pstB phosphate transp 99.3 4.1E-12 8.9E-17 110.7 5.1 142 21-164 14-190 (260)
252 PRK14247 phosphate ABC transpo 99.3 4.5E-12 9.7E-17 109.9 5.3 124 41-164 22-180 (250)
253 TIGR02142 modC_ABC molybdenum 99.3 1.3E-12 2.9E-17 118.6 2.1 133 15-165 6-166 (354)
254 PRK15134 microcin C ABC transp 99.3 1.6E-12 3.5E-17 124.5 2.7 128 37-165 24-191 (529)
255 PRK10895 lipopolysaccharide AB 99.3 3.4E-12 7.4E-17 110.0 4.4 121 44-164 25-171 (241)
256 PRK15112 antimicrobial peptide 99.3 2.6E-12 5.7E-17 112.4 3.7 127 37-164 28-183 (267)
257 PRK13638 cbiO cobalt transport 99.3 2.4E-12 5.1E-17 112.9 3.3 127 38-164 17-170 (271)
258 PRK10762 D-ribose transporter 99.3 6E-12 1.3E-16 119.8 6.2 141 10-165 5-176 (501)
259 PRK11231 fecE iron-dicitrate t 99.3 4E-12 8.7E-17 110.5 4.5 125 41-165 21-173 (255)
260 PRK13540 cytochrome c biogenes 99.3 5.7E-12 1.2E-16 105.5 5.2 120 40-164 19-161 (200)
261 cd03288 ABCC_SUR2 The SUR doma 99.3 5.2E-12 1.1E-16 109.9 5.0 144 20-164 19-190 (257)
262 cd03234 ABCG_White The White s 99.3 7E-12 1.5E-16 107.0 5.7 142 23-164 6-177 (226)
263 TIGR01184 ntrCD nitrate transp 99.3 1.8E-12 3.8E-17 111.0 2.0 120 45-164 8-148 (230)
264 cd03254 ABCC_Glucan_exporter_l 99.3 3.6E-12 7.9E-17 108.9 3.9 142 21-164 3-173 (229)
265 PRK14267 phosphate ABC transpo 99.3 5E-12 1.1E-16 109.8 4.8 120 45-164 27-183 (253)
266 PRK14235 phosphate transporter 99.3 6.5E-12 1.4E-16 109.9 5.4 143 20-164 19-197 (267)
267 PRK13639 cbiO cobalt transport 99.2 3.9E-12 8.5E-17 111.7 4.0 127 38-164 18-171 (275)
268 PRK13549 xylose transporter AT 99.2 5E-12 1.1E-16 120.4 5.1 139 10-164 6-177 (506)
269 PRK15439 autoinducer 2 ABC tra 99.2 2.9E-12 6.2E-17 122.2 3.4 125 39-164 28-174 (510)
270 TIGR03411 urea_trans_UrtD urea 99.2 5.6E-12 1.2E-16 108.7 4.8 124 41-164 21-177 (242)
271 PRK14269 phosphate ABC transpo 99.2 6E-12 1.3E-16 108.8 5.0 125 40-164 20-176 (246)
272 PRK15056 manganese/iron transp 99.2 4.9E-12 1.1E-16 110.9 4.5 127 38-164 23-176 (272)
273 PRK13409 putative ATPase RIL; 99.2 2.2E-12 4.7E-17 124.3 2.3 136 21-164 341-487 (590)
274 TIGR02324 CP_lyasePhnL phospho 99.2 5.4E-12 1.2E-16 107.5 4.5 125 40-164 26-183 (224)
275 COG4586 ABC-type uncharacteriz 99.2 4.9E-13 1.1E-17 112.9 -1.9 151 23-205 40-217 (325)
276 PRK11308 dppF dipeptide transp 99.2 1.7E-12 3.7E-17 116.5 1.4 124 41-165 34-189 (327)
277 PRK13631 cbiO cobalt transport 99.2 6.4E-12 1.4E-16 112.5 5.0 144 21-164 22-210 (320)
278 PRK14240 phosphate transporter 99.2 7.4E-12 1.6E-16 108.5 5.3 143 20-164 3-180 (250)
279 PRK13539 cytochrome c biogenes 99.2 5.3E-12 1.1E-16 106.3 4.2 131 15-164 9-161 (207)
280 TIGR03740 galliderm_ABC gallid 99.2 6E-12 1.3E-16 107.2 4.6 122 39-164 17-158 (223)
281 PRK11144 modC molybdate transp 99.2 1.6E-12 3.5E-17 117.9 1.1 139 11-165 3-163 (352)
282 PRK08356 hypothetical protein; 99.2 9.5E-11 2.1E-15 97.7 11.7 128 48-191 5-137 (195)
283 PRK14251 phosphate ABC transpo 99.2 5E-12 1.1E-16 109.6 4.1 124 41-164 23-181 (251)
284 PRK11701 phnK phosphonate C-P 99.2 2.3E-12 5.1E-17 112.2 2.0 119 45-164 29-185 (258)
285 TIGR01277 thiQ thiamine ABC tr 99.2 7.5E-12 1.6E-16 105.8 5.1 124 41-164 17-162 (213)
286 cd03300 ABC_PotA_N PotA is an 99.2 6.4E-12 1.4E-16 107.7 4.6 125 41-165 19-165 (232)
287 TIGR03005 ectoine_ehuA ectoine 99.2 6E-12 1.3E-16 109.2 4.5 140 23-164 3-180 (252)
288 PRK11124 artP arginine transpo 99.2 6.3E-12 1.4E-16 108.4 4.6 127 38-164 18-175 (242)
289 TIGR01978 sufC FeS assembly AT 99.2 5.9E-12 1.3E-16 108.6 4.3 124 41-164 19-178 (243)
290 COG4525 TauB ABC-type taurine 99.2 1.3E-11 2.8E-16 99.6 5.9 126 41-166 24-168 (259)
291 PRK13946 shikimate kinase; Pro 99.2 8.3E-11 1.8E-15 97.1 11.0 158 48-249 10-178 (184)
292 cd03231 ABC_CcmA_heme_exporter 99.2 8.9E-12 1.9E-16 104.4 5.2 114 45-164 23-159 (201)
293 TIGR01360 aden_kin_iso1 adenyl 99.2 5.4E-11 1.2E-15 98.4 9.9 120 48-191 3-129 (188)
294 cd03237 ABC_RNaseL_inhibitor_d 99.2 3.8E-12 8.2E-17 109.9 3.0 116 45-164 22-149 (246)
295 PRK14273 phosphate ABC transpo 99.2 6.1E-12 1.3E-16 109.3 4.2 127 38-164 23-184 (254)
296 PRK14262 phosphate ABC transpo 99.2 8E-12 1.7E-16 108.3 4.9 127 38-164 19-180 (250)
297 PRK11614 livF leucine/isoleuci 99.2 4.9E-12 1.1E-16 108.7 3.5 119 44-164 27-171 (237)
298 PRK15079 oligopeptide ABC tran 99.2 1.7E-12 3.6E-17 116.7 0.6 125 40-165 39-196 (331)
299 TIGR02982 heterocyst_DevA ABC 99.2 6.6E-12 1.4E-16 106.7 4.2 124 41-164 24-175 (220)
300 PRK10419 nikE nickel transport 99.2 1E-11 2.2E-16 108.7 5.5 127 37-164 27-185 (268)
301 KOG2878 Predicted kinase [Gene 99.2 2.4E-11 5.2E-16 98.0 7.1 115 47-163 30-166 (282)
302 cd03217 ABC_FeS_Assembly ABC-t 99.2 4E-12 8.7E-17 106.4 2.8 118 39-164 17-138 (200)
303 TIGR03415 ABC_choXWV_ATP choli 99.2 2.8E-12 6.2E-17 116.8 1.9 137 15-166 31-200 (382)
304 COG4559 ABC-type hemin transpo 99.2 1.3E-11 2.8E-16 100.9 5.4 140 10-164 2-175 (259)
305 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.2 4.4E-12 9.4E-17 109.1 3.0 127 37-164 18-173 (238)
306 PRK14259 phosphate ABC transpo 99.2 8.5E-12 1.8E-16 109.3 4.8 142 21-164 14-188 (269)
307 PRK13543 cytochrome c biogenes 99.2 9.5E-12 2.1E-16 105.3 5.0 139 21-164 12-171 (214)
308 COG4674 Uncharacterized ABC-ty 99.2 1.4E-11 3E-16 99.4 5.5 136 12-162 8-179 (249)
309 PRK14274 phosphate ABC transpo 99.2 1.5E-11 3.4E-16 107.1 6.3 142 21-164 13-189 (259)
310 cd03251 ABCC_MsbA MsbA is an e 99.2 9.6E-12 2.1E-16 106.7 4.9 126 38-164 18-172 (234)
311 COG1119 ModF ABC-type molybden 99.2 1.9E-11 4.1E-16 102.2 6.3 142 21-164 32-205 (257)
312 PRK10938 putative molybdenum t 99.2 8.5E-12 1.8E-16 118.5 4.9 123 42-165 23-170 (490)
313 PF13207 AAA_17: AAA domain; P 99.2 6.1E-12 1.3E-16 96.5 3.1 114 50-196 1-117 (121)
314 TIGR01189 ccmA heme ABC export 99.2 1E-11 2.2E-16 103.8 4.7 116 45-164 23-161 (198)
315 PRK14257 phosphate ABC transpo 99.2 1.1E-11 2.3E-16 111.5 5.0 142 20-164 80-259 (329)
316 PRK14270 phosphate ABC transpo 99.2 9.5E-12 2E-16 107.9 4.5 123 42-164 24-181 (251)
317 PRK10261 glutathione transport 99.2 4.6E-12 1E-16 123.3 2.8 145 21-165 13-203 (623)
318 PRK13547 hmuV hemin importer A 99.2 3.5E-12 7.6E-17 111.7 1.7 121 45-165 24-189 (272)
319 cd03299 ABC_ModC_like Archeal 99.2 8.2E-12 1.8E-16 107.2 3.8 120 45-164 22-163 (235)
320 PRK10253 iron-enterobactin tra 99.2 9.2E-12 2E-16 108.8 4.2 127 38-164 23-177 (265)
321 PRK14241 phosphate transporter 99.2 9.6E-12 2.1E-16 108.3 4.3 124 41-164 23-182 (258)
322 PRK14254 phosphate ABC transpo 99.2 1.3E-11 2.8E-16 108.9 5.1 141 21-164 40-214 (285)
323 PRK13541 cytochrome c biogenes 99.2 1.1E-11 2.5E-16 103.2 4.4 119 41-164 19-157 (195)
324 PRK14256 phosphate ABC transpo 99.2 2.2E-11 4.7E-16 105.7 6.2 142 21-164 5-182 (252)
325 cd03248 ABCC_TAP TAP, the Tran 99.2 1.1E-11 2.4E-16 105.8 4.3 143 21-164 12-184 (226)
326 PRK00625 shikimate kinase; Pro 99.2 8E-11 1.7E-15 95.9 9.1 34 50-86 2-35 (173)
327 PRK14238 phosphate transporter 99.2 9.8E-12 2.1E-16 109.0 4.0 142 21-164 25-201 (271)
328 PRK09700 D-allose transporter 99.2 9.9E-12 2.1E-16 118.6 4.3 140 9-164 5-179 (510)
329 PRK14249 phosphate ABC transpo 99.2 1.8E-11 3.8E-16 106.2 5.4 127 38-164 20-181 (251)
330 cd03253 ABCC_ATM1_transporter 99.2 1.5E-11 3.3E-16 105.6 5.0 126 38-164 17-171 (236)
331 TIGR03269 met_CoM_red_A2 methy 99.2 5.4E-12 1.2E-16 120.6 2.4 121 45-165 23-203 (520)
332 PRK14737 gmk guanylate kinase; 99.2 8.9E-11 1.9E-15 96.9 9.3 170 46-245 2-182 (186)
333 PRK14237 phosphate transporter 99.2 1.6E-11 3.6E-16 107.4 5.1 142 21-164 21-197 (267)
334 PRK14248 phosphate ABC transpo 99.2 1.3E-11 2.8E-16 108.1 4.4 142 21-164 22-198 (268)
335 PRK15093 antimicrobial peptide 99.2 4E-12 8.6E-17 114.5 0.9 120 45-165 30-193 (330)
336 PRK14253 phosphate ABC transpo 99.2 1.7E-11 3.7E-16 106.2 4.8 121 44-164 25-179 (249)
337 PRK14272 phosphate ABC transpo 99.2 1.9E-11 4.2E-16 106.0 5.0 120 45-164 27-182 (252)
338 cd03290 ABCC_SUR1_N The SUR do 99.2 2.8E-11 6.2E-16 102.6 5.9 122 42-164 21-174 (218)
339 PRK10619 histidine/lysine/argi 99.2 1.9E-11 4.1E-16 106.4 4.8 127 38-164 21-186 (257)
340 TIGR02633 xylG D-xylose ABC tr 99.2 1.6E-11 3.4E-16 116.9 4.7 120 45-164 24-175 (500)
341 COG1137 YhbG ABC-type (unclass 99.2 9.1E-13 2E-17 106.5 -3.3 135 15-164 11-173 (243)
342 PRK14260 phosphate ABC transpo 99.2 2E-11 4.4E-16 106.3 4.9 142 21-164 8-184 (259)
343 PRK14245 phosphate ABC transpo 99.2 2E-11 4.3E-16 105.8 4.7 120 45-164 26-180 (250)
344 PRK13948 shikimate kinase; Pro 99.2 3E-10 6.6E-15 93.1 11.4 161 46-247 8-175 (182)
345 PTZ00265 multidrug resistance 99.2 1.5E-11 3.2E-16 129.2 4.5 62 19-80 381-444 (1466)
346 PRK14236 phosphate transporter 99.2 2.5E-11 5.3E-16 106.5 5.2 143 21-165 26-203 (272)
347 PRK13549 xylose transporter AT 99.2 1.4E-11 3E-16 117.5 3.9 144 21-164 260-439 (506)
348 TIGR02322 phosphon_PhnN phosph 99.2 8.4E-10 1.8E-14 90.7 14.0 26 49-74 2-27 (179)
349 PRK13545 tagH teichoic acids e 99.2 2E-11 4.3E-16 114.1 4.8 144 21-164 22-177 (549)
350 PRK14263 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 106.2 4.8 140 10-164 9-183 (261)
351 PRK14255 phosphate ABC transpo 99.2 2.3E-11 5E-16 105.5 4.8 127 38-164 21-182 (252)
352 COG4175 ProV ABC-type proline/ 99.2 6.3E-11 1.4E-15 102.2 7.2 139 45-184 51-230 (386)
353 PRK09700 D-allose transporter 99.2 1.4E-11 2.9E-16 117.6 3.5 140 21-164 266-443 (510)
354 PRK14261 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 105.7 4.5 123 43-165 27-184 (253)
355 TIGR01313 therm_gnt_kin carboh 99.2 1.2E-09 2.7E-14 88.2 14.5 34 51-87 1-34 (163)
356 PLN03130 ABC transporter C fam 99.2 3.3E-11 7.3E-16 127.7 6.7 140 19-165 613-775 (1622)
357 cd00227 CPT Chloramphenicol (C 99.2 4.1E-10 8.9E-15 92.2 11.8 40 48-88 2-41 (175)
358 TIGR03269 met_CoM_red_A2 methy 99.2 9.9E-12 2.2E-16 118.8 2.4 144 21-164 280-461 (520)
359 PRK00698 tmk thymidylate kinas 99.2 3.8E-10 8.2E-15 94.6 11.7 28 47-74 2-29 (205)
360 PLN03232 ABC transporter C fam 99.2 2.6E-11 5.7E-16 128.1 5.6 138 20-164 614-774 (1495)
361 PRK11819 putative ABC transpor 99.2 2.7E-11 5.8E-16 116.7 5.2 140 10-164 7-197 (556)
362 COG4608 AppF ABC-type oligopep 99.2 3.7E-11 7.9E-16 102.3 5.3 110 23-163 29-142 (268)
363 PRK03695 vitamin B12-transport 99.2 3.3E-11 7.1E-16 104.3 5.2 127 22-164 11-167 (248)
364 PRK14271 phosphate ABC transpo 99.2 2.3E-11 4.9E-16 106.9 4.2 142 21-164 22-197 (276)
365 PRK15134 microcin C ABC transp 99.2 9.1E-12 2E-16 119.3 1.8 144 21-164 276-459 (529)
366 PRK14239 phosphate transporter 99.2 3.6E-11 7.8E-16 104.3 5.3 126 39-164 22-182 (252)
367 PRK09580 sufC cysteine desulfu 99.2 2.4E-11 5.2E-16 105.1 4.2 126 38-164 17-179 (248)
368 PRK15177 Vi polysaccharide exp 99.2 1.5E-11 3.2E-16 104.0 2.8 123 23-164 3-138 (213)
369 PRK10261 glutathione transport 99.2 8.1E-12 1.8E-16 121.7 1.3 143 21-164 314-497 (623)
370 PRK14246 phosphate ABC transpo 99.2 3.8E-11 8.2E-16 104.4 5.3 119 45-164 33-187 (257)
371 PRK14265 phosphate ABC transpo 99.2 1.9E-11 4.2E-16 107.3 3.4 142 21-164 21-195 (274)
372 PRK13947 shikimate kinase; Pro 99.1 8.1E-10 1.8E-14 90.0 12.8 36 50-88 3-38 (171)
373 COG0529 CysC Adenylylsulfate k 99.1 1.4E-10 3E-15 92.1 7.7 46 43-88 18-65 (197)
374 PLN02200 adenylate kinase fami 99.1 7.4E-10 1.6E-14 94.7 12.8 122 45-190 40-167 (234)
375 PRK14244 phosphate ABC transpo 99.1 5.8E-11 1.2E-15 103.0 6.1 126 39-164 22-183 (251)
376 PRK14275 phosphate ABC transpo 99.1 3.1E-11 6.7E-16 106.6 4.3 142 21-164 40-216 (286)
377 PRK14264 phosphate ABC transpo 99.1 3.5E-11 7.7E-16 107.2 4.6 142 21-164 46-234 (305)
378 PRK13546 teichoic acids export 99.1 3.5E-11 7.5E-16 104.9 4.5 116 45-164 47-177 (264)
379 PF00005 ABC_tran: ABC transpo 99.1 1.8E-12 4E-17 101.6 -3.4 114 45-159 8-137 (137)
380 COG3845 ABC-type uncharacteriz 99.1 4.1E-11 9E-16 109.0 4.9 139 10-164 5-174 (501)
381 COG4618 ArpD ABC-type protease 99.1 1E-10 2.2E-15 106.7 7.4 167 21-203 335-530 (580)
382 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 4.4E-11 9.5E-16 115.1 5.3 140 21-164 323-477 (552)
383 PLN03211 ABC transporter G-25; 99.1 2E-11 4.3E-16 119.2 3.0 125 39-164 85-240 (659)
384 COG4133 CcmA ABC-type transpor 99.1 2.6E-11 5.7E-16 97.2 3.1 125 22-164 17-164 (209)
385 TIGR02323 CP_lyasePhnK phospho 99.1 3.6E-11 7.8E-16 104.4 4.2 123 41-164 22-182 (253)
386 PRK12269 bifunctional cytidyla 99.1 8.5E-11 1.8E-15 116.4 7.2 93 151-247 191-285 (863)
387 COG0444 DppD ABC-type dipeptid 99.1 7.5E-12 1.6E-16 108.8 -0.2 118 45-163 28-186 (316)
388 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 1.6E-11 3.5E-16 97.2 1.7 85 41-164 19-104 (144)
389 PRK14243 phosphate transporter 99.1 5.5E-11 1.2E-15 103.9 5.1 142 21-164 11-185 (264)
390 PRK11819 putative ABC transpor 99.1 5.1E-11 1.1E-15 114.7 5.3 140 21-164 325-479 (556)
391 PRK10982 galactose/methyl gala 99.1 4.5E-11 9.7E-16 113.6 4.9 120 45-164 21-168 (491)
392 PRK03839 putative kinase; Prov 99.1 1.1E-09 2.4E-14 90.1 12.5 100 50-190 2-101 (180)
393 PRK15064 ABC transporter ATP-b 99.1 6.2E-11 1.3E-15 113.6 5.6 137 21-164 320-472 (530)
394 COG1123 ATPase components of v 99.1 2.4E-11 5.3E-16 113.1 2.6 125 38-164 307-463 (539)
395 PRK03731 aroL shikimate kinase 99.1 5.3E-10 1.2E-14 91.1 10.3 35 49-86 3-37 (171)
396 TIGR01257 rim_protein retinal- 99.1 6.4E-11 1.4E-15 125.9 5.9 146 20-165 928-1096(2272)
397 PRK14252 phosphate ABC transpo 99.1 1E-10 2.3E-15 102.2 6.4 146 17-164 13-195 (265)
398 PRK11288 araG L-arabinose tran 99.1 4E-11 8.7E-16 114.1 4.0 119 45-164 27-174 (501)
399 PRK10938 putative molybdenum t 99.1 3.6E-11 7.7E-16 114.2 3.7 142 21-164 261-435 (490)
400 PRK11147 ABC transporter ATPas 99.1 5.7E-11 1.2E-15 116.1 5.1 141 21-165 320-475 (635)
401 cd03291 ABCC_CFTR1 The CFTR su 99.1 6.9E-11 1.5E-15 103.9 5.0 136 21-164 40-193 (282)
402 TIGR03771 anch_rpt_ABC anchore 99.1 1.8E-10 3.8E-15 98.2 7.1 120 45-164 3-147 (223)
403 cd00464 SK Shikimate kinase (S 99.1 1.7E-10 3.7E-15 92.2 6.7 33 51-86 2-34 (154)
404 cd00267 ABC_ATPase ABC (ATP-bi 99.1 4.5E-11 9.9E-16 96.1 3.2 92 45-164 22-114 (157)
405 PRK15064 ABC transporter ATP-b 99.1 6.8E-11 1.5E-15 113.4 4.4 120 45-164 24-189 (530)
406 TIGR02633 xylG D-xylose ABC tr 99.1 7E-11 1.5E-15 112.5 4.2 144 21-164 258-437 (500)
407 COG0194 Gmk Guanylate kinase [ 99.1 9.4E-10 2E-14 88.5 10.0 175 47-246 3-181 (191)
408 cd02021 GntK Gluconate kinase 99.1 2.9E-09 6.3E-14 84.8 12.8 133 50-212 1-139 (150)
409 COG4107 PhnK ABC-type phosphon 99.1 3.5E-10 7.6E-15 89.7 7.2 140 9-163 6-184 (258)
410 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 1.4E-09 3.1E-14 89.6 11.3 34 50-86 1-34 (183)
411 TIGR01257 rim_protein retinal- 99.1 7.6E-11 1.6E-15 125.4 4.5 146 21-166 1938-2106(2272)
412 PRK10762 D-ribose transporter 99.1 4.5E-11 9.7E-16 113.8 2.6 127 38-164 268-429 (501)
413 PRK08154 anaerobic benzoate ca 99.1 7.6E-10 1.6E-14 98.7 9.7 41 42-85 127-167 (309)
414 PRK14266 phosphate ABC transpo 99.1 1.8E-10 3.9E-15 99.8 5.5 120 45-164 26-180 (250)
415 TIGR00957 MRP_assoc_pro multi 99.1 1.4E-10 3E-15 122.9 5.7 138 20-164 636-794 (1522)
416 cd01672 TMPK Thymidine monopho 99.1 2.9E-09 6.3E-14 88.6 12.6 29 49-77 1-29 (200)
417 PF01583 APS_kinase: Adenylyls 99.1 3.5E-10 7.6E-15 89.8 6.5 108 47-185 1-116 (156)
418 PRK15439 autoinducer 2 ABC tra 99.1 2.1E-10 4.6E-15 109.4 6.3 127 38-164 279-437 (510)
419 cd03222 ABC_RNaseL_inhibitor T 99.1 6.2E-11 1.3E-15 96.9 2.3 84 45-165 22-106 (177)
420 PRK09825 idnK D-gluconate kina 99.1 2.5E-08 5.4E-13 81.6 17.6 163 48-248 3-169 (176)
421 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.5E-10 3.2E-15 111.5 5.1 127 38-164 21-195 (552)
422 COG4167 SapF ABC-type antimicr 99.0 2.8E-10 6E-15 91.0 5.6 120 45-164 36-183 (267)
423 PRK11288 araG L-arabinose tran 99.0 1.5E-10 3.2E-15 110.2 4.8 128 37-164 268-430 (501)
424 COG1123 ATPase components of v 99.0 6.4E-11 1.4E-15 110.3 1.9 140 9-164 5-188 (539)
425 PLN03073 ABC transporter F fam 99.0 2.3E-10 4.9E-15 112.5 5.9 138 21-164 509-661 (718)
426 COG4598 HisP ABC-type histidin 99.0 7E-11 1.5E-15 94.1 1.9 142 10-166 7-188 (256)
427 CHL00131 ycf16 sulfate ABC tra 99.0 1.4E-10 3.1E-15 100.5 4.0 142 21-164 8-185 (252)
428 KOG0054 Multidrug resistance-a 99.0 1.1E-10 2.5E-15 119.1 3.7 167 17-206 1135-1335(1381)
429 cd03238 ABC_UvrA The excision 99.0 1.7E-10 3.8E-15 94.1 4.1 107 23-164 11-123 (176)
430 cd03236 ABC_RNaseL_inhibitor_d 99.0 2.1E-10 4.4E-15 99.6 4.8 120 45-165 23-174 (255)
431 PRK14530 adenylate kinase; Pro 99.0 1.5E-09 3.3E-14 91.8 9.7 36 49-87 4-39 (215)
432 COG4172 ABC-type uncharacteriz 99.0 1.3E-10 2.9E-15 103.3 3.1 124 40-164 305-460 (534)
433 PRK14531 adenylate kinase; Pro 99.0 2.5E-09 5.4E-14 88.2 10.5 35 49-86 3-37 (183)
434 PRK10636 putative ABC transpor 99.0 1.7E-10 3.6E-15 112.7 3.9 137 21-165 313-465 (638)
435 PRK10636 putative ABC transpor 99.0 2.1E-10 4.7E-15 111.9 4.5 136 15-165 8-184 (638)
436 TIGR03263 guanyl_kin guanylate 99.0 1.5E-09 3.3E-14 89.1 8.9 26 48-73 1-26 (180)
437 cd02030 NDUO42 NADH:Ubiquinone 99.0 3E-09 6.4E-14 90.3 10.8 74 168-246 142-216 (219)
438 PRK11147 ABC transporter ATPas 99.0 5.3E-11 1.2E-15 116.3 0.0 135 15-164 10-190 (635)
439 COG0488 Uup ATPase components 99.0 5.2E-10 1.1E-14 105.7 6.6 137 21-164 322-473 (530)
440 COG4181 Predicted ABC-type tra 99.0 1.7E-09 3.6E-14 85.7 8.3 127 37-164 25-180 (228)
441 COG0396 sufC Cysteine desulfur 99.0 1E-09 2.3E-14 90.9 7.5 145 15-189 10-189 (251)
442 PRK10535 macrolide transporter 99.0 3.6E-10 7.7E-15 110.6 5.4 128 37-165 23-179 (648)
443 TIGR00041 DTMP_kinase thymidyl 99.0 7E-09 1.5E-13 86.3 12.5 29 48-76 3-31 (195)
444 PRK03846 adenylylsulfate kinas 99.0 7.4E-09 1.6E-13 86.5 12.6 45 42-86 18-64 (198)
445 PRK14532 adenylate kinase; Pro 99.0 3.3E-09 7.1E-14 87.9 10.0 35 50-87 2-36 (188)
446 COG4148 ModC ABC-type molybdat 99.0 1E-09 2.2E-14 93.4 6.9 158 15-189 7-198 (352)
447 cd02019 NK Nucleoside/nucleoti 99.0 1.7E-09 3.7E-14 74.3 6.7 27 151-177 34-63 (69)
448 PRK14527 adenylate kinase; Pro 99.0 1.6E-09 3.6E-14 89.9 7.9 39 45-86 3-41 (191)
449 PRK10982 galactose/methyl gala 99.0 2E-10 4.3E-15 109.1 2.5 140 21-164 251-425 (491)
450 TIGR00455 apsK adenylylsulfate 99.0 3.2E-09 6.9E-14 87.6 9.2 43 44-86 14-58 (184)
451 COG4136 ABC-type uncharacteriz 99.0 4.9E-10 1.1E-14 86.8 3.9 122 41-167 21-171 (213)
452 COG4178 ABC-type uncharacteriz 99.0 1.3E-09 2.9E-14 102.9 7.3 139 19-163 391-548 (604)
453 KOG3354 Gluconate kinase [Carb 99.0 4.4E-09 9.6E-14 81.6 8.7 135 46-212 10-159 (191)
454 PLN02199 shikimate kinase 99.0 6.6E-09 1.4E-13 90.3 10.9 160 48-250 102-291 (303)
455 PF13238 AAA_18: AAA domain; P 99.0 2.6E-10 5.7E-15 88.0 2.0 110 51-191 1-114 (129)
456 COG5265 ATM1 ABC-type transpor 98.9 9.8E-10 2.1E-14 98.3 5.5 174 16-207 258-460 (497)
457 PRK00889 adenylylsulfate kinas 98.9 2.8E-09 6E-14 87.3 7.7 40 46-85 2-43 (175)
458 PRK13973 thymidylate kinase; P 98.9 3.8E-09 8.1E-14 89.3 8.5 35 48-82 3-37 (213)
459 PRK13409 putative ATPase RIL; 98.9 3.6E-10 7.8E-15 109.0 2.5 135 14-164 79-246 (590)
460 PRK13808 adenylate kinase; Pro 98.9 6.4E-09 1.4E-13 92.5 10.0 35 50-87 2-36 (333)
461 COG0488 Uup ATPase components 98.9 7.4E-10 1.6E-14 104.7 4.2 135 15-164 10-187 (530)
462 PLN03140 ABC transporter G fam 98.9 1.7E-09 3.8E-14 113.5 7.1 129 21-164 179-370 (1470)
463 TIGR00956 3a01205 Pleiotropic 98.9 1.2E-09 2.6E-14 114.8 5.9 143 21-164 760-936 (1394)
464 TIGR00955 3a01204 The Eye Pigm 98.9 1.9E-09 4.2E-14 105.0 6.5 120 44-164 47-200 (617)
465 PRK14528 adenylate kinase; Pro 98.9 6E-09 1.3E-13 86.2 8.4 35 49-86 2-36 (186)
466 PRK13975 thymidylate kinase; P 98.9 2.1E-08 4.6E-13 83.5 11.8 26 48-73 2-27 (196)
467 TIGR01187 potA spermidine/putr 98.9 3.6E-10 7.9E-15 101.6 1.0 113 53-165 1-135 (325)
468 COG4778 PhnL ABC-type phosphon 98.9 4.1E-09 8.8E-14 83.4 6.6 128 36-163 25-185 (235)
469 KOG0061 Transporter, ABC super 98.9 8.4E-10 1.8E-14 106.8 3.3 127 37-164 45-204 (613)
470 PLN03073 ABC transporter F fam 98.9 6.2E-10 1.4E-14 109.5 2.4 142 21-164 178-378 (718)
471 COG0125 Tmk Thymidylate kinase 98.9 7.3E-08 1.6E-12 80.5 14.3 31 47-77 2-32 (208)
472 PRK02496 adk adenylate kinase; 98.9 8.2E-09 1.8E-13 85.2 8.6 35 49-86 2-36 (184)
473 PTZ00088 adenylate kinase 1; P 98.9 1.6E-08 3.4E-13 86.1 10.4 122 45-190 3-131 (229)
474 PF01202 SKI: Shikimate kinase 98.9 4.1E-09 8.9E-14 84.8 6.3 146 57-245 1-157 (158)
475 COG3265 GntK Gluconate kinase 98.9 6.9E-08 1.5E-12 74.6 12.5 129 54-213 1-133 (161)
476 TIGR01351 adk adenylate kinase 98.9 1.2E-08 2.6E-13 86.0 9.1 115 51-190 2-125 (210)
477 smart00072 GuKc Guanylate kina 98.9 3.4E-08 7.5E-13 81.5 11.6 173 48-246 2-181 (184)
478 cd03278 ABC_SMC_barmotin Barmo 98.9 7E-10 1.5E-14 92.5 1.3 118 45-164 20-151 (197)
479 COG4161 ArtP ABC-type arginine 98.8 4.7E-09 1E-13 82.4 5.6 144 21-166 3-177 (242)
480 PRK00300 gmk guanylate kinase; 98.8 1.9E-08 4.1E-13 84.4 9.7 29 45-73 2-30 (205)
481 TIGR00956 3a01205 Pleiotropic 98.8 1.2E-09 2.6E-14 114.8 2.4 120 45-164 84-243 (1394)
482 COG0563 Adk Adenylate kinase a 98.8 1.1E-08 2.3E-13 83.7 7.3 36 50-88 2-37 (178)
483 KOG3079 Uridylate kinase/adeny 98.8 7.7E-09 1.7E-13 82.8 6.2 126 45-192 5-136 (195)
484 PRK00279 adk adenylate kinase; 98.8 4.2E-08 9.1E-13 83.0 10.7 35 50-87 2-36 (215)
485 COG1936 Predicted nucleotide k 98.8 1.1E-07 2.3E-12 75.7 11.9 99 49-190 1-104 (180)
486 COG1101 PhnK ABC-type uncharac 98.8 2.6E-09 5.7E-14 87.7 2.7 121 45-166 29-184 (263)
487 KOG0927 Predicted transporter 98.8 1.4E-08 3.1E-13 93.5 7.7 138 21-162 390-541 (614)
488 TIGR01271 CFTR_protein cystic 98.8 2.9E-09 6.4E-14 112.7 3.7 127 36-164 440-582 (1490)
489 TIGR03574 selen_PSTK L-seryl-t 98.8 6.1E-08 1.3E-12 83.9 10.9 156 50-248 1-166 (249)
490 PF13671 AAA_33: AAA domain; P 98.8 7.2E-09 1.6E-13 81.7 4.6 34 50-86 1-34 (143)
491 PRK14021 bifunctional shikimat 98.8 4.2E-08 9.1E-13 93.9 10.7 158 47-247 5-176 (542)
492 PF07931 CPT: Chloramphenicol 98.8 1.2E-08 2.5E-13 82.9 5.8 155 48-235 1-162 (174)
493 PRK14738 gmk guanylate kinase; 98.8 7E-08 1.5E-12 81.1 10.7 27 45-71 10-36 (206)
494 PRK05537 bifunctional sulfate 98.8 8.8E-08 1.9E-12 91.9 12.4 42 45-86 389-433 (568)
495 PRK11545 gntK gluconate kinase 98.8 3.9E-07 8.4E-12 73.7 14.4 30 54-86 1-30 (163)
496 KOG0054 Multidrug resistance-a 98.8 8.1E-09 1.7E-13 105.8 5.4 139 21-166 519-679 (1381)
497 PF00625 Guanylate_kin: Guanyl 98.8 2.9E-08 6.4E-13 81.8 7.8 127 48-190 2-135 (183)
498 cd01428 ADK Adenylate kinase ( 98.8 7.3E-08 1.6E-12 80.0 10.3 34 51-87 2-35 (194)
499 PLN03140 ABC transporter G fam 98.8 6.2E-09 1.3E-13 109.5 4.6 144 21-165 868-1054(1470)
500 PLN02674 adenylate kinase 98.7 7.2E-08 1.6E-12 82.5 10.2 39 46-87 29-67 (244)
No 1
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=267.82 Aligned_cols=206 Identities=46% Similarity=0.860 Sum_probs=189.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
.++.+|||+|+|||||||+++.|...|+...+.++++|+||+.......+..+..+|++|.++|++.+.+.|..++.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 56699999999999999999999999987788999999999876666666788889999999999999999999999999
Q ss_pred cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHH
Q 022073 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (303)
Q Consensus 126 v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (303)
+..|.|++.++.+.. ......+.++||+||++++.|..+++.+|++|||++|.++|+.|++.|+..++|++++.+++||
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999964 3456788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhccc
Q 022073 206 SKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (303)
Q Consensus 206 ~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~~ 252 (303)
...++|.|+.||+|+++.||++|+.++.+..+++.+...|...+.+.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~~ 211 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSEQ 211 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhhhh
Confidence 99999999999999999999999999899999988888887655443
No 2
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=4.5e-35 Score=245.03 Aligned_cols=203 Identities=32% Similarity=0.614 Sum_probs=177.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~----~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~ 123 (303)
-.+|||+|+|||||||+|+.|++.+. +..+.++++|+||+..........+.+.|++|.++|.+.+.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 37999999999999999999987662 33456899999996543222222345689999999999999999999999
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHH
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (303)
+.+..|.|++..+.+.. ....+.+.+++|+||.++++++.+++.+|++|||++|.++++.|+++|+..++|++.+...+
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999988753 34556778999999999988899999999999999999999999999998889999999999
Q ss_pred HHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
+|.....|.+..|+.|++..||+||+.+.++.+++..+.++|+..|..
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~~ 209 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLEN 209 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999876653
No 3
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.6e-33 Score=256.91 Aligned_cols=256 Identities=59% Similarity=0.966 Sum_probs=240.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------CCCEEEEeCCCCCCCCCHHHHHh--hcccCCCCCCcccHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH-------DQRVVLVNQDSFYHNLTEQELAR--VHEYNFDHPDAFDTEKLLS 115 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~-------~~~~~~l~~D~~~~~~~~~~~~~--~~~~~f~~p~~~d~~~l~~ 115 (303)
...+.+|||.|.++|||||++..+.+.+. +.+++.+++|.||+.++.++... .+.++|++|++++.+.+..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 56889999999999999999999999888 77899999999999988887653 3458999999999999999
Q ss_pred HHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccC
Q 022073 116 SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (303)
Q Consensus 116 ~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~ 195 (303)
.++.+..+..+..|.|++..+.+.......+.++++++++|++++++.+.+.+++.++|++++.+.++.|++.|+...+|
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g 200 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERG 200 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhc
Confidence 99999999999999999999999766567788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCeeEecccceeeeeee
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHT 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~~~~~~~~~n~~~L~~~~~i~g~~~ 275 (303)
++++.+..||..+.+|+|..|+.|.+++||.+|+..+++..+++.++++|...|..+...+++.++..+++++++.|+++
T Consensus 201 ~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~~l~~t~~i~~~~t 280 (473)
T KOG4203|consen 201 RDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVLSLPDTNQIKGKLT 280 (473)
T ss_pred ccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccceecCCccccCCcee
Confidence 99999999999999999999999999999999999989999999999999999998888889999999999999999999
Q ss_pred eecCCCCCCcCeeeehhHHHHHHhh
Q 022073 276 LIRDSQTTKHDFVFYSDRLIRLVGT 300 (303)
Q Consensus 276 i~~~~~t~~~~f~f~~~~~~~~~~~ 300 (303)
++++..|++.+|.||++|++||+++
T Consensus 281 ~~~~~~Ts~~~~~~~~~~~vrl~l~ 305 (473)
T KOG4203|consen 281 LLRDHTTSRHPFSFYSDHLVRLVLE 305 (473)
T ss_pred EeecCCcCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999997765
No 4
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.97 E-value=1.9e-30 Score=219.05 Aligned_cols=205 Identities=45% Similarity=0.831 Sum_probs=177.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
..++.+|+|+|++|||||||++.|++.++...+.++++|+|+...............|++|.+++.+.+.+.|..+..+.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999996667899999999865432222333455788899999999999999999999
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.+..|.|++..+.+... .....+.+++|+||++++..+.+.+.+|++|||++|.+++++|++.|+...+|.+.+....+
T Consensus 83 ~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~ 161 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ 161 (209)
T ss_pred ccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHH
Confidence 99999999998877432 33456778999999999876788999999999999999999999999977889999999999
Q ss_pred HhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhc
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~ 250 (303)
|.....|.|..|+.|.++.||+||+++++|+.+++.+.++|...+.
T Consensus 162 ~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 162 YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988888899999998886543
No 5
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.97 E-value=9.4e-32 Score=224.25 Aligned_cols=184 Identities=39% Similarity=0.743 Sum_probs=154.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCC------EEEEeCCCCCCCCCHHHHHh--hcccCCCCCCcccHHHHHHHHHHhh
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQR------VVLVNQDSFYHNLTEQELAR--VHEYNFDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~------~~~l~~D~~~~~~~~~~~~~--~~~~~f~~p~~~d~~~l~~~l~~l~ 121 (303)
||||+|++||||||+|+.|+..|+..+ ..+++.|.|+.......... ...+.|.+|+++|++.+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999997433 67888999885433333322 2356788899999999999999999
Q ss_pred CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHH
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (303)
.++.+..|.|++..+.+.. ......+.++||+||+++++++.+++.+|++|||+++.++++.|++.|+..++|++.+.+
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999988754 234456889999999999988899999999999999999999999999988999999999
Q ss_pred HHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
.++|. ...|.|..|+.|+++.||+||++...|.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~ 192 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSGPTND 192 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSH
T ss_pred EEEee-cCChhhhhheeccccccEEEECCCCCcc
Confidence 99998 8999999999999999999999886653
No 6
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.97 E-value=5.9e-30 Score=217.19 Aligned_cols=178 Identities=21% Similarity=0.271 Sum_probs=150.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHH------hhcccCCCC--CCcccHHHHHHHHHH
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELA------RVHEYNFDH--PDAFDTEKLLSSMEK 119 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~------~~~~~~f~~--p~~~d~~~l~~~l~~ 119 (303)
+|||+|+|||||||+++.|.+.|... .+.++++|+||+ ....+.+ .....+|++ |+++|++.|.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr-~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR-YERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc-CCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHH
Confidence 58999999999999999999988643 478999999998 3333322 124468888 999999999999999
Q ss_pred hhCCCccccCcccCCC-----CccCC----CCceecCCCcEEEEecccc---ccchhhhhhcCeEEEEecChHHHHHHHH
Q 022073 120 LRHGQAVDIPNYDFKS-----YKNNV----FPARRVNPSDVILLEGILV---FHDSRVRELMNMKIFVDTDADVRLARRI 187 (303)
Q Consensus 120 l~~~~~v~~p~~~~~~-----~~~~~----~~~~~~~~~~vvildg~~~---~~d~~~~~~~d~~I~v~~~~~~~~~R~~ 187 (303)
++.++.+..|.|++.. +.+.. .......+.+++|+||.+. ..+..+++.+|++|||+++.+.++.|++
T Consensus 80 L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 80 YGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 9999999999997632 22211 1112247899999999984 4457899999999999999999999999
Q ss_pred hhCccccCCCHHHHHHHHhhccccchhhccccccccccEEec
Q 022073 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (303)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (303)
.||..+||++.+.+.+||.++. |.|..||.|+++.||+++.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999999999999988 9999999999999999984
No 7
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.97 E-value=1.5e-29 Score=213.06 Aligned_cols=204 Identities=44% Similarity=0.821 Sum_probs=176.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
.+++.+|+|+|++|||||||++.|++.++...+.++++|+|+.............+.|+.|++++.+.+.+.|..+..++
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999987656789999999854332223334566788899999999999999999999
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.+.+|.|++..+.+. .......+.+++|+||.+++++..+.+.+|++|||+++.++++.|+++|+...++++.+....+
T Consensus 83 ~v~~p~yd~~~~~~~-~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRP-KETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCC-CceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 999999999887763 3334456789999999999877888999999999999999999999999987889999999999
Q ss_pred HhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
|.....|.|..|+.|.+..||+||+++++++.+++.+.+.|+..+
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHLL 206 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999899999999998887553
No 8
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.97 E-value=2.3e-29 Score=210.68 Aligned_cols=196 Identities=58% Similarity=0.989 Sum_probs=171.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
+|||+|++||||||+++.|++.+....+.++++|+|++.+...+........+..|.+++++.+.+.|..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998655789999999997776655555555667788899999999999999999899999
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhcc
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (303)
.|++..+.+.... ..+.+.+++|+||++.+.++...+.+|.+|||++|.+++++|++.|+...++.+.+.....|....
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999998875433 356778999999999998788889999999999999999999999987778888888889999999
Q ss_pred ccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 210 KPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 210 ~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
.+.|..|+.++++.||+||+++.++..++..+.++++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~ 196 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK 196 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHh
Confidence 9999999999999999999988777688888887775
No 9
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.97 E-value=6.4e-30 Score=236.84 Aligned_cols=217 Identities=25% Similarity=0.475 Sum_probs=181.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
...+.+|||+|+||||||||++.|++.++ ++.++++|+|+.. . ....++|++|..+|++.+.+.|..++.++
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~--~----~~i~~nfD~P~a~D~d~L~enL~~Lr~Gk 133 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDS--S----RIIDGNFDDPRLTDYDTLLDNIHDLKAGK 133 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecc--h----hhhCccCCChhhcchhHHHHHHHHHhCCC
Confidence 44678999999999999999999999984 6789999998632 1 12346788999999999999999999999
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.+.+|.|++..+.+.........+.++||+||+++++ +.+++.+|++|||+++.+.++.|++.||..++|++.+.+.++
T Consensus 134 sV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q 212 (656)
T PLN02318 134 SVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQ 212 (656)
T ss_pred ceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999988753334456788999999999984 899999999999999999999999999998999999999999
Q ss_pred HhhccccchhhccccccccccEEecC------CCCCHHHH-----HHHHHHHHHHhcccccc--ccCCCeeEeccccee
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPR------GGDNHVAI-----DLIVQHIRTKLGQHDLC--KIYPNLYVIHSTFQI 270 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~------~~~~~~~~-----~~~v~~i~~~l~~~~~~--~~~~n~~~L~~~~~i 270 (303)
|...++|.|..|++|.++.||++|.+ +..++.++ +..+++|+..|.++... .....+|..++.+..
T Consensus 213 ~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~ 291 (656)
T PLN02318 213 ISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDP 291 (656)
T ss_pred HHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCc
Confidence 99999999999999999999999954 34555555 78899999999865322 223455666665543
No 10
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.96 E-value=3.7e-28 Score=205.61 Aligned_cols=183 Identities=26% Similarity=0.456 Sum_probs=145.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEEeCCCCCCCCCHHHHHhhccc-CCCCCCcccHHHHHHHHHHhhC-C
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLRH-G 123 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~----~~~~~~l~~D~~~~~~~~~~~~~~~~~-~f~~p~~~d~~~l~~~l~~l~~-~ 123 (303)
+|||+|++||||||+++.|++.+. ...+.++++|+||. +.......+.. .++.|+++|.+.+.+.|..++. +
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~--~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~ 78 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY--PNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGK 78 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC--cHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCC
Confidence 589999999999999999999984 24578999999984 33333333322 2455889999999999999999 4
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh-----hhhhcCeEEEEecChHHHHHHHHhhC---ccccC
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-----VRELMNMKIFVDTDADVRLARRIRRD---TVEKG 195 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~-----~~~~~d~~I~v~~~~~~~~~R~~~R~---~~~~~ 195 (303)
+.+.+|.|++..+.+.........+.++||+||+++++++. +.+.+|++|||++|.+++.+|+++|. ..+++
T Consensus 79 ~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~ 158 (220)
T cd02025 79 KNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAF 158 (220)
T ss_pred CcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998865444336788999999999998765 89999999999999999877666653 23344
Q ss_pred CCHHHHH----------------HHHhhccccchhhccccccccccEEecCCCCC
Q 022073 196 RDIATVL----------------DQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 196 ~~~~~~~----------------~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
++...+. ++|....+|.+.+|+.|+++.||+||+.+.++
T Consensus 159 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 159 SDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred hCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 4444333 34777899999999999999999999876554
No 11
>PLN02348 phosphoribulokinase
Probab=99.95 E-value=7.1e-28 Score=215.12 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=167.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----------------QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDA 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-----------------~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~ 107 (303)
.+++.+|||+|++||||||+++.|++.|+. ..+.++++|+||.. ........ ...+.+|.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~-dr~~r~~~-g~t~ldP~a 123 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGRKEK-GVTALDPRA 123 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC-ChhhHhhc-CCccCCccc
Confidence 457899999999999999999999999862 24678999999852 22232222 234456889
Q ss_pred ccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHH
Q 022073 108 FDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRI 187 (303)
Q Consensus 108 ~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~ 187 (303)
+|++.+.+.|..++.|+.+..|.|++..+.... ...+.+.++||+||.+.+++..+++.+|++|||+++.+++++|++
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999987532 345678899999999998888899999999999999999999999
Q ss_pred hhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCeeEeccc
Q 022073 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHST 267 (303)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~~~~~~~~~n~~~L~~~ 267 (303)
+|+...+|.+.+.+..++.. ..|.|..|+.|.++.||+||+.-......-+.--+.++-+|-.+...+.++.+++++..
T Consensus 202 ~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v~p~~l~~~~~~~~~l~vrli~~~~~~~~~~~~l~d~~ 280 (395)
T PLN02348 202 QRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKNFDPVYLFDEG 280 (395)
T ss_pred HhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEecCCcCCCCCCCCceEEEEEEecCCCCCCCcceeeccC
Confidence 99988899999999888765 68999999999999999999643211100000011222233344444455666776654
Q ss_pred c
Q 022073 268 F 268 (303)
Q Consensus 268 ~ 268 (303)
.
T Consensus 281 ~ 281 (395)
T PLN02348 281 S 281 (395)
T ss_pred C
Confidence 4
No 12
>PRK15453 phosphoribulokinase; Provisional
Probab=99.95 E-value=3.9e-27 Score=201.57 Aligned_cols=182 Identities=22% Similarity=0.298 Sum_probs=148.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHH------HhhcccCCCC--CCcccHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQEL------ARVHEYNFDH--PDAFDTEKLLS 115 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~------~~~~~~~f~~--p~~~d~~~l~~ 115 (303)
.++.+|||+|.|||||||+++.|+..|... ++.++++|+||+. ...+. ......+|++ |+++|++.|.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~y-dr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRY-TRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccccc-ChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 567899999999999999999999988643 4789999999962 22222 1223347888 99999999999
Q ss_pred HHHHhhCCCccccCcccCC-----CCccCCCC---ceec-CCCcEEEEecccccc---chhhhhhcCeEEEEecChHHHH
Q 022073 116 SMEKLRHGQAVDIPNYDFK-----SYKNNVFP---ARRV-NPSDVILLEGILVFH---DSRVRELMNMKIFVDTDADVRL 183 (303)
Q Consensus 116 ~l~~l~~~~~v~~p~~~~~-----~~~~~~~~---~~~~-~~~~vvildg~~~~~---d~~~~~~~d~~I~v~~~~~~~~ 183 (303)
.|..++.++....|.|++. .+.+.... +..+ .+.+++|+||.+.++ +..+++.+|++|||+++.+.++
T Consensus 82 ~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ 161 (290)
T PRK15453 82 LFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW 161 (290)
T ss_pred HHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence 9999999888888877532 13332111 1223 568999999998863 3678999999999999999999
Q ss_pred HHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEec
Q 022073 184 ARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (303)
Q Consensus 184 ~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (303)
.|+++||..+||++.+.+.+|+.++. |+|..||.|+++.||+++.
T Consensus 162 irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 162 IQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 99999999999999999999999985 9999999999999999873
No 13
>PRK05439 pantothenate kinase; Provisional
Probab=99.95 E-value=5.9e-27 Score=205.51 Aligned_cols=188 Identities=27% Similarity=0.467 Sum_probs=151.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHhhccc-CCCCCCcccHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~~~~~~~~~~~~~~~~~-~f~~p~~~d~~~l~~~l~~ 119 (303)
.+.+.+|||+|++||||||+|+.|+..+.. ..+.++++|+||.. ..++...+.. .++.|+++|.+.+.+.|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~--~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP--NAVLEERGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC--HHHHhhhhccccCCCcccccHHHHHHHHHH
Confidence 567899999999999999999999998752 35889999999953 3343333322 3567999999999999999
Q ss_pred hhCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh------hhhcCeEEEEecChHHHHHHHHhhCcc
Q 022073 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV------RELMNMKIFVDTDADVRLARRIRRDTV 192 (303)
Q Consensus 120 l~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~------~~~~d~~I~v~~~~~~~~~R~~~R~~~ 192 (303)
++.|+. +..|.||+..+.+.......+.++++||+||+++++.+.. .+.+|++|||++|.+.+.+|++.|...
T Consensus 161 Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~ 240 (311)
T PRK05439 161 VKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLK 240 (311)
T ss_pred HHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHH
Confidence 999986 9999999999988644445667899999999998866655 899999999999999988887776532
Q ss_pred c---------------cC----CCHHHHHHHHhhccccchhhccccccccccEEecCCCCC
Q 022073 193 E---------------KG----RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 193 ~---------------~~----~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
. .+ +......++|.....|.+.+||.|++..||+||..+.++
T Consensus 241 lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 241 LRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred HHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 1 11 122344557778889999999999999999999977654
No 14
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.95 E-value=1e-26 Score=202.70 Aligned_cols=187 Identities=25% Similarity=0.452 Sum_probs=149.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEEeCCCCCCCCCHHHHHhhc-ccCCCCCCcccHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~----~~~~~~l~~D~~~~~~~~~~~~~~~-~~~f~~p~~~d~~~l~~~l~~ 119 (303)
.+.+.+|||+|++||||||+++.|.+.+. ...+.++++|+|+.. .......+ ...++.|+++|.+.+.+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~--~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHP--NQVLKERNLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccccc--HHHHHHcCCccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999999998885 124788999999953 33333222 124566999999999999999
Q ss_pred hhCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh----------hhhhcCeEEEEecChHHHHHHHHh
Q 022073 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (303)
Q Consensus 120 l~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~----------~~~~~d~~I~v~~~~~~~~~R~~~ 188 (303)
++.|.. +..|.||+..+.+.......+.+++++|+||++.++.+. +.+.+|++||||+|.+++++|+++
T Consensus 137 Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~ 216 (290)
T TIGR00554 137 LKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYIN 216 (290)
T ss_pred HHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHH
Confidence 999885 899999999999875544556789999999999987665 468999999999999999999888
Q ss_pred hCccc--cC-----------------CCHHHHHHHHhhccccchhhccccccccccEEecCCCC
Q 022073 189 RDTVE--KG-----------------RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (303)
Q Consensus 189 R~~~~--~~-----------------~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (303)
|...- ++ +.......+|.....|.+.++|.|++..||+||..+.+
T Consensus 217 R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~ 280 (290)
T TIGR00554 217 RFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGAN 280 (290)
T ss_pred HHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCC
Confidence 75211 11 22333445678889999999999999999999987744
No 15
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.94 E-value=1.4e-26 Score=190.10 Aligned_cols=174 Identities=28% Similarity=0.481 Sum_probs=144.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+|+|+|++||||||+++.|++.+.. .++.++++|+||+.. .... .....++.|..+|++.+.+.|..++.++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~-~~~~--~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~ 77 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR-KTPR--DEDGNYDFESILDLDLLNKNLHDLLNGKEVE 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc-cccc--ccCCCCCCCccccHHHHHHHHHHHHCCCeee
Confidence 5899999999999999999999852 367899999999754 1111 1123456666799999999999999999999
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHH-HHHHHHhhCccccCCCHHHHHHHHh
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV-RLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~-~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
+|.|++..+.+.........+.+++|+||++++. +.+++.+|++|||+++.+. ++.|++.||..++|++.+.++.+|
T Consensus 78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~- 155 (179)
T cd02028 78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW- 155 (179)
T ss_pred cccceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-
Confidence 9999999998754334556788999999999984 7999999999999999998 999999999999999999999995
Q ss_pred hccccchh-hccccccccccEEec
Q 022073 207 KFVKPAFD-DFILPTKKYADIIIP 229 (303)
Q Consensus 207 ~~~~p~~~-~~i~~~~~~aD~iI~ 229 (303)
... |.++ .|+.|+++.||++++
T Consensus 156 ~~~-~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 156 PSV-PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred ccc-cCchhhcCCCchhccceecc
Confidence 444 5555 455778999999875
No 16
>PRK07429 phosphoribulokinase; Provisional
Probab=99.93 E-value=3.7e-25 Score=196.70 Aligned_cols=218 Identities=22% Similarity=0.414 Sum_probs=164.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
..++.+|||+|++||||||+++.|++.+++..+.++..|+|+. ....+....+ +...+|.+.+.+.+.+.+..++.++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~g-~~~l~p~~~~~d~l~~~l~~L~~g~ 82 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHS-YDRKQRKELG-ITALDPRANNLDIMYEHLKALKTGQ 82 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccccc-CCHHHHHhcC-CcccCccchHHHHHHHHHHHHHCCC
Confidence 5678999999999999999999999999877778888999873 3444433332 2233577888999999999999999
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.+..|.|++..+.... .....+.+++|+||++.+++..+++.+|++|||+++.+++++|+++|+...+|.+.+.+...
T Consensus 83 ~I~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 83 PILKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred ceecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 9999999999886532 23456678999999998778888999999999999999999999999987788888887777
Q ss_pred HhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCeeEeccc
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHST 267 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~~~~~~~~~n~~~L~~~ 267 (303)
+.. ..|.+..|+.|.++.||+||.+........+.--+.++-+|-.+...+.++..++++..
T Consensus 161 i~~-r~pd~~~yI~P~k~~ADiVI~~~p~~~~~~~~~~~~l~v~li~~~~~~~~~~~~~~d~~ 222 (327)
T PRK07429 161 IEA-REPDFEAYIRPQRQWADVVIQFLPTQLIDNDEENKVLRVRLVLRPGIPHPDPAYLFDEG 222 (327)
T ss_pred HHH-hCccHhhhhcccccCCCEEEEcCCCcCCCCCCCCcEEEEEEEecCCCCCCCcceeeccc
Confidence 655 58999999999999999999755221111011112222233333334455556666554
No 17
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.92 E-value=2.2e-24 Score=187.96 Aligned_cols=177 Identities=27% Similarity=0.517 Sum_probs=149.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
+|||+|++||||||+++.|++.+++.+..++.+|+|++ +...+.... +..+.+|.+.+.+.+.+.+..++.++.+..|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~-g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P 78 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS-LDRKGRKET-GITALDPRANNFDLMYEQLKALKEGQAIEKP 78 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc-CCHHHHHHh-hcccccccchhHHHHHHHHHHHHCCCCcccc
Confidence 58999999999999999999999877888999999875 344444333 3344457778888899999999999999999
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhcc
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (303)
.|++..+.... .....+.+++|+||++.+++..+++.+|++|||+++.+++++|+++|+...+|.+.+.+.+.+.. .
T Consensus 79 ~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r 155 (273)
T cd02026 79 IYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-R 155 (273)
T ss_pred cccccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-h
Confidence 99998876422 23456779999999998888899999999999999999999999999987788888988888865 5
Q ss_pred ccchhhccccccccccEEecCC
Q 022073 210 KPAFDDFILPTKKYADIIIPRG 231 (303)
Q Consensus 210 ~p~~~~~i~~~~~~aD~iI~~~ 231 (303)
.|.+.+|+.|.++.||+||...
T Consensus 156 ~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 156 KPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred chhHHHHhccccccCcEEEEcc
Confidence 8999999999999999999644
No 18
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.90 E-value=2e-23 Score=171.25 Aligned_cols=164 Identities=16% Similarity=0.257 Sum_probs=122.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
+|+|+|++||||||+|+.|++.+. ++.++++|+||+..........+.++|++|+++|.+.+.+.|..++.++.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 589999999999999999999984 688999999996554333333355689999999999999999999998866555
Q ss_pred cccCCCCccCC-------------CCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccc-cC
Q 022073 130 NYDFKSYKNNV-------------FPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KG 195 (303)
Q Consensus 130 ~~~~~~~~~~~-------------~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~-~~ 195 (303)
.++........ .......+.++||+||.+++.++.+.+.+|++|||++|.+++++|+++|+... .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~ 158 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLE 158 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccC
Confidence 55444332210 11223467789999999998878999999999999999999999999998433 22
Q ss_pred CCHHHHHHHHhhccccchhh
Q 022073 196 RDIATVLDQYSKFVKPAFDD 215 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~ 215 (303)
.-+..-...+.+.++|.|.+
T Consensus 159 ~~w~Dp~~yf~~~v~p~y~~ 178 (187)
T cd02024 159 GFWPDPPGYFDGHVWPMYLK 178 (187)
T ss_pred cccCCCCcccccccchhHHH
Confidence 22222334455566666653
No 19
>PRK06696 uridine kinase; Validated
Probab=99.89 E-value=1.1e-22 Score=173.12 Aligned_cols=181 Identities=25% Similarity=0.346 Sum_probs=136.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhcccCCCC-----CCcccHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDH-----PDAFDTEKLLSSM 117 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~~f~~-----p~~~d~~~l~~~l 117 (303)
.+.+.+|||+|++||||||+|+.|++.|+.. .+..+++|+||.. .......+ +.+ ++++|.+.|.+.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~--~~~r~~~~---~~~~~g~~~~~~d~~~L~~~l 93 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP--RVIRYRRG---RESAEGYYEDAYDYTALRRLL 93 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC--HHHHHHcC---CCChhhcCccccCHHHHHHHH
Confidence 5578999999999999999999999999643 4567789999953 33333222 222 2578999998877
Q ss_pred HHh-hCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCcccc
Q 022073 118 EKL-RHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (303)
Q Consensus 118 ~~l-~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~ 194 (303)
... ..+. .+..|.|++..+...........+..++|+||+++. ++.+...+|++|||++|.+++++|+..|+...+
T Consensus 94 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~-~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~ 172 (223)
T PRK06696 94 LDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL-RPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAF 172 (223)
T ss_pred HhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh-hhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhh
Confidence 664 3332 355667887776543222334466789999999986 688999999999999999999999999986666
Q ss_pred CCCHHHHHHHHhhccccchhhccccc--cccccEEecCCC
Q 022073 195 GRDIATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRGG 232 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~--~~~aD~iI~~~~ 232 (303)
|. .......|+....|.+..|+.+. ++.||+||+|+.
T Consensus 173 g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 173 GS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred CC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 64 45566778888888888886554 788999998775
No 20
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.89 E-value=4.9e-22 Score=169.84 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=145.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEE-EeCCCCCCCCCHHHHHhhccc-CCCCCCcccHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVL-VNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKL 120 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~-l~~D~~~~~~~~~~~~~~~~~-~f~~p~~~d~~~l~~~l~~l 120 (303)
..++.+|||+|++|||||||++.|++.+++.+ +.+ ++.|+|+.. .......+.. .++.|.+++.+.+.+.+..+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~--~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD--NAVLDAHGLRPRKGAPETFDVAGLAALLRRL 107 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC--HHHHHhcccccccCCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999999997543 344 899998843 2222222211 24567889999999999999
Q ss_pred hCCC-ccccCcccCCCCccCCCCceecCCCcEEEEeccccccch----hhhhhcCeEEEEecChHHHHHHHHhhCccccC
Q 022073 121 RHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (303)
Q Consensus 121 ~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~----~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~ 195 (303)
+.+. .+.+|.|++................+++|+||.+..++. .+.+.+|.+|||++|.+.+++|+..|+ ...|
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g 186 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGG 186 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcC
Confidence 9887 889999999887765332222235789999999887653 567789999999999999999999995 4567
Q ss_pred CCHHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
.+.+...+.+.....|.+ .|+.|.++.||+||.|++..+
T Consensus 187 ~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~~ 225 (229)
T PRK09270 187 LSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATGE 225 (229)
T ss_pred CCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCcc
Confidence 888888888876666766 688888999999999887653
No 21
>PRK07667 uridine kinase; Provisional
Probab=99.87 E-value=2.2e-21 Score=161.46 Aligned_cols=173 Identities=18% Similarity=0.298 Sum_probs=126.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhcccCCCC--CCcccHHHHHH-HHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFDH--PDAFDTEKLLS-SMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~~f~~--p~~~d~~~l~~-~l~~ 119 (303)
.....+|||+|++||||||+++.|++.+... .+.+++.|+|+..... ....+...+.. ...+|.+.+.. .+..
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~--~~~~~~~~~~~~~~~~~d~~~L~~~v~~~ 91 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNK--RYHTGFEEWYEYYYLQWDIEWLRQKFFRK 91 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhh--HHhcCCCchhhhhhhhhhHHHHHHHHHHh
Confidence 3455899999999999999999999988543 4689999999853321 11111111100 12467777765 4688
Q ss_pred hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHH
Q 022073 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (303)
Q Consensus 120 l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~ 199 (303)
++.++.+.+|.|++..+.... ......+.+++|+||+++. +..+.+.+|.+|||++|.+++++|+++|+.
T Consensus 92 L~~~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~-~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~-------- 161 (193)
T PRK07667 92 LQNETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQ-RKEWRDFFHYMVYLDCPRETRFLRESEETQ-------- 161 (193)
T ss_pred hcCCCeEEEeeeccccccccc-cceecCCCCEEEEEehhhh-hhhHHhhceEEEEEECCHHHHHHHHhcccH--------
Confidence 888889999999998876532 2233456799999999965 688999999999999999999999998752
Q ss_pred HHHHHHhhccccchhhcccc--ccccccEEec
Q 022073 200 TVLDQYSKFVKPAFDDFILP--TKKYADIIIP 229 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~--~~~~aD~iI~ 229 (303)
....++..+..|.++.|+.. .+..||+||.
T Consensus 162 ~~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 162 KNLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred hHHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 23345666666788888653 3788999973
No 22
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.80 E-value=1e-18 Score=147.70 Aligned_cols=145 Identities=27% Similarity=0.444 Sum_probs=121.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHhhcccC-CCCCCcccHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~~~~~~~~~~~~~~~~~~-f~~p~~~d~~~l~~~l~~ 119 (303)
.+.+.+|||+|+.|+||||+++.|+..+.. ..+.++.+|.|+. +...+...+-.. -+.|++||...+.+.+..
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy--~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHY--PNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccccc--CHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 677899999999999999999999998852 2478999999984 333333332221 234899999999999999
Q ss_pred hhCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccch----hhhhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 120 l~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~----~~~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
++.+.. +..|+||+........+......++++|+||...+++. .+.+.+|+.||||++.+...+|.+.|..
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 997765 89999999999998888888899999999999998876 3567899999999999999999999963
No 23
>PRK08233 hypothetical protein; Provisional
Probab=99.80 E-value=2e-18 Score=142.31 Aligned_cols=173 Identities=23% Similarity=0.427 Sum_probs=117.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhh-c-ccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARV-H-EYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~-~-~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
++.+|+|+|++||||||+|+.|++.++. ..++..|.++......+.... . ...| ..++.+.+.+.+..+..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~- 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYDFDNCPEDICKWIDKGANY---SEWVLTPLIKDIQELIAK- 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEEcccCchhhhhhhhccCCh---hhhhhHHHHHHHHHHHcC-
Confidence 3589999999999999999999999853 355556666533222222211 1 1111 234555555555543321
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCcccc-CCCHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK-GRDIATVLD 203 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~-~~~~~~~~~ 203 (303)
.+.+++|+|+++....+.+.+.+|++|||++|.+++++|+++|+.... .........
T Consensus 76 ----------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 133 (182)
T PRK08233 76 ----------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLK 133 (182)
T ss_pred ----------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHH
Confidence 123678999998876778888999999999999999999998864321 223445566
Q ss_pred HHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 204 ~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
.|.....|.|..++.+....++++|+++. .++.+.+.|...+..
T Consensus 134 ~~~~~~~~~y~~~~~~~~~~~~~vId~~~----~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 134 HYLNYARPLYLEALHTVKPNADIVLDGAL----SVEEIINQIEEELYR 177 (182)
T ss_pred HHHHHHHHHHHHHhhcCccCCeEEEcCCC----CHHHHHHHHHHHHHh
Confidence 77777888899888887778999987553 355666666655543
No 24
>PRK06547 hypothetical protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=135.49 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=108.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
...+.+|+|+|++||||||+++.|++.+ ++.++++|+||+..... ..+.+.+.+.+.. .++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~~~~~~~d~~~~~~~~~--------------~~~~~~l~~~~l~--~g~ 72 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART---GFQLVHLDDLYPGWHGL--------------AAASEHVAEAVLD--EGR 72 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCeecccceecccccC--------------ChHHHHHHHHHHh--CCC
Confidence 5668899999999999999999999987 67899999998542110 1122334444433 455
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcC-----eEEEEecChHHHHHHHHhhCccccCCCHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMN-----MKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d-----~~I~v~~~~~~~~~R~~~R~~~~~~~~~~ 199 (303)
...++ |++...... ......+.+++|+||.+++. +.+++.+| ++|||++|.+++++|+++|++. ..
T Consensus 73 ~~~~~-yd~~~~~~~--~~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~ 143 (172)
T PRK06547 73 PGRWR-WDWANNRPG--DWVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YA 143 (172)
T ss_pred Cceec-CCCCCCCCC--CcEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hh
Confidence 55556 777766542 12344567899999999884 67888899 9999999999999999999842 22
Q ss_pred HHHHHHhhccccchhhccc--cccccccEEec
Q 022073 200 TVLDQYSKFVKPAFDDFIL--PTKKYADIIIP 229 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~--~~~~~aD~iI~ 229 (303)
. |+..-.|..+.|+. +.+..||+++.
T Consensus 144 ~----~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 144 P----HWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred H----HHHHHHHHHHHHHhcCCChhccEEEec
Confidence 2 33333445556654 35678998873
No 25
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=2.2e-18 Score=143.30 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH-----HH-HhhcccCCCCCCcccHHHHHHHHH-
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ-----EL-ARVHEYNFDHPDAFDTEKLLSSME- 118 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~-----~~-~~~~~~~f~~p~~~d~~~l~~~l~- 118 (303)
..|.+|||+|++||||||+++.|++.+ ++.+++.|...+.+... .. ..++.-.+. .+.+|...+.+.+-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l---g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~ 79 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL---NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITE 79 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc---CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhC
Confidence 456899999999999999999999877 67899999876544221 11 123333332 24566554443321
Q ss_pred ---HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh--hhhcCeEEEEecChHHHHHHHHhhCccc
Q 022073 119 ---KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV--RELMNMKIFVDTDADVRLARRIRRDTVE 193 (303)
Q Consensus 119 ---~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~--~~~~d~~I~v~~~~~~~~~R~~~R~~~~ 193 (303)
.++.-+.+.+|.......+.. ...+..++++|.|+.+ +... ...||.+|+|+||.+++++|++.|++.+
T Consensus 80 d~~~~~~Le~i~HP~V~~~~~~~~-----~~~~~~~vv~eipLL~-E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s 153 (204)
T PRK14733 80 SKEAKKWLEDYLHPVINKEIKKQV-----KESDTVMTIVDIPLLG-PYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN 153 (204)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHH-----HhcCCCeEEEEechhh-hccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence 111112234454432222221 1123468999999987 4543 5689999999999999999999998665
Q ss_pred cCCCHHHHHHHHhhccccchhhccccccccccEEecCCC
Q 022073 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG 232 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~ 232 (303)
+......+..|+....+ .+.||+||+|++
T Consensus 154 ~~~a~~ri~~Q~~~eek----------~~~aD~VI~N~g 182 (204)
T PRK14733 154 RQQAVAFINLQISDKER----------EKIADFVIDNTE 182 (204)
T ss_pred HHHHHHHHHhCCCHHHH----------HHhCCEEEECcC
Confidence 55444555566655443 688999999987
No 26
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=1.7e-18 Score=144.07 Aligned_cols=177 Identities=20% Similarity=0.301 Sum_probs=106.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HH-HhhcccCCCCCC-cccHHHHHHHHH--
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------EL-ARVHEYNFDHPD-AFDTEKLLSSME-- 118 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~------~~-~~~~~~~f~~p~-~~d~~~l~~~l~-- 118 (303)
.+|||+|++||||||+++.|++.+ ++.++++|.+.+.+... .. ..++.-.+...+ ..|...+.+.+-
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 479999999999999999999987 78999999876544321 11 123332333334 455443333211
Q ss_pred --HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCC
Q 022073 119 --KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (303)
Q Consensus 119 --~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~ 196 (303)
..+.-+.+.+|.......+.. ......+++++|.|+.+ +..+.+.||.+|||+||.+++++|+++|++.
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~~----~~~~~~~~vv~e~pll~-E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~---- 149 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEEL----AQLKSNPIVVLVIPLLF-EAKLTDLCSEIWVVDCSPEQQLQRLIKRDGL---- 149 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH----HhcCCCCEEEEEeHHhc-CcchHhCCCEEEEEECCHHHHHHHHHHcCCC----
Confidence 001111123343222221111 11123468999999987 6888899999999999999999999999743
Q ss_pred CHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHH
Q 022073 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (303)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~ 247 (303)
+.+.......... | +.+....||+||.|+++ ++.+.+++..
T Consensus 150 s~e~~~~ri~~Q~-~-----~~~k~~~aD~vI~N~g~----~e~l~~qv~~ 190 (195)
T PRK14730 150 TEEEAEARINAQW-P-----LEEKVKLADVVLDNSGD----LEKLYQQVDQ 190 (195)
T ss_pred CHHHHHHHHHhCC-C-----HHHHHhhCCEEEECCCC----HHHHHHHHHH
Confidence 3333333332211 1 11235789999988864 4444444443
No 27
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.73 E-value=3.4e-18 Score=142.30 Aligned_cols=167 Identities=23% Similarity=0.337 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH---HH----hhcccCCCCCCcccHHHHHHHHH--
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE---LA----RVHEYNFDHPDAFDTEKLLSSME-- 118 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~---~~----~~~~~~f~~p~~~d~~~l~~~l~-- 118 (303)
+.+|||+|++||||||+++.|++ + ++.++++|.+.+.+.... .. .++.-.+...+.+|...+.+.+-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 46899999999999999999998 5 789999998876543211 11 22322333234455544433221
Q ss_pred --HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCC
Q 022073 119 --KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (303)
Q Consensus 119 --~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~ 196 (303)
.++.-+.+.+|.......+.. ......+++++|.|+.+ +..+.+.||.+|+|++|.+++.+|+.+|++.+...
T Consensus 78 ~~~~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vv~e~pll~-e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~ 152 (194)
T PRK00081 78 PEARKKLEAILHPLIREEILEQL----QEAESSPYVVLDIPLLF-ENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEE 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcccCCEEEEEehHhh-cCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHH
Confidence 111111233343322221111 11122379999999987 68888999999999999999999999987433221
Q ss_pred CHHHHHHHHhhccccchhhccccccccccEEecCCCC
Q 022073 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (303)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (303)
....+..|..... ....||++|+|+++
T Consensus 153 ~~~ri~~Q~~~~~----------~~~~ad~vI~N~g~ 179 (194)
T PRK00081 153 AEAIIASQMPREE----------KLARADDVIDNNGD 179 (194)
T ss_pred HHHHHHHhCCHHH----------HHHhCCEEEECCCC
Confidence 1122222222111 24679999998764
No 28
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.73 E-value=2.6e-19 Score=146.43 Aligned_cols=166 Identities=28% Similarity=0.400 Sum_probs=100.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HH-HhhcccCCCCCCcccHHHHHHHHH---
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------EL-ARVHEYNFDHPDAFDTEKLLSSME--- 118 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~------~~-~~~~~~~f~~p~~~d~~~l~~~l~--- 118 (303)
++|||+|+.||||||+++.|++ + |+.++++|...+.+... .+ ..++.-.+...+..|...+.+.+-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~---G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L---GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T---T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C---CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 5899999999999999999999 4 89999999765444321 11 234444444445566555444321
Q ss_pred -HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 119 -~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
.++.-+.+.+|.......++. ......+++++|.|+.+ +..+.+.||.+|+|+||.+++++|+++|++......
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~----~~~~~~~~~v~e~pLL~-E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~ 151 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFI----KRNKSEKVVVVEIPLLF-ESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEA 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHCHSTSEEEEE-TTTT-TTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH----HhccCCCEEEEEcchhh-hhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHH
Confidence 111111233354322222221 11122389999999987 788999999999999999999999999975444333
Q ss_pred HHHHHHHHhhccccchhhccccccccccEEecCCCC
Q 022073 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (303)
......|+....+ .+.||+||.|+++
T Consensus 152 ~~ri~~Q~~~~~k----------~~~ad~vI~N~g~ 177 (180)
T PF01121_consen 152 EARIASQMPDEEK----------RKRADFVIDNNGS 177 (180)
T ss_dssp HHHHHTS--HHHH----------HHH-SEEEE-SSH
T ss_pred HHHHHhCCCHHHH----------HHhCCEEEECCCC
Confidence 3333344444332 5789999998863
No 29
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.72 E-value=2.9e-18 Score=142.49 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=103.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HhhcccCCCCCCcccHHHHHHHHH----
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSME---- 118 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~------~-~~~~~~~f~~p~~~d~~~l~~~l~---- 118 (303)
+|||+|++||||||+++.|.+ + +..+++.|...+.+.... + ..++...+...+..|...+.+.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~---g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-L---GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-C---CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 489999999999999999976 3 788999998765443211 1 123333444345556554443321
Q ss_pred HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCH
Q 022073 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 119 ~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~ 198 (303)
..+.-+.+.+|.......+.. ......+++++|.|+.+ +..+.+.||.+|||++|.+++++|+.+|++. +.
T Consensus 77 ~~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vi~e~pLL~-E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~----s~ 147 (196)
T PRK14732 77 KLKALNELIHPLVRKDFQKIL----QTTAEGKLVIWEVPLLF-ETDAYTLCDATVTVDSDPEESILRTISRDGM----KK 147 (196)
T ss_pred HHHHHHHHhhHHHHHHHHHHH----HHHhcCCcEEEEeeeee-EcCchhhCCEEEEEECCHHHHHHHHHHcCCC----CH
Confidence 111112233454432222211 11123468899999987 7888899999999999999999999999743 33
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCCC
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
+.....+.... | ..+....||++|.|+++-
T Consensus 148 e~a~~ri~~Q~-~-----~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 148 EDVLARIASQL-P-----ITEKLKRADYIVRNDGNR 177 (196)
T ss_pred HHHHHHHHHcC-C-----HHHHHHhCCEEEECCCCH
Confidence 44333333211 1 122367899999988643
No 30
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.72 E-value=2.6e-18 Score=141.35 Aligned_cols=165 Identities=20% Similarity=0.330 Sum_probs=105.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------HH-hhcccCCCCCCcccHHHHHHHHHH---
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------LA-RVHEYNFDHPDAFDTEKLLSSMEK--- 119 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~------~~-~~~~~~f~~p~~~d~~~l~~~l~~--- 119 (303)
+|||+|++||||||+++.|++ + ++.++++|.+.+.+.... .. .++.-.+...+.+|...+.+.+-.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 589999999999999999998 5 789999999886654321 11 122222333345665555443321
Q ss_pred -hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCH
Q 022073 120 -LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 120 -l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~ 198 (303)
++.-+.+.+|.+.....+.. .......++++|.|+.+ +..+.+.+|.+|||++|.+++++|++.|++. +.
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~----~~~~~~~~vive~plL~-e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~----s~ 147 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQL----AEARKEKVVVLDIPLLF-ETGLEKLVDRVIVVDAPPEIQIERLMKRDGL----SE 147 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHccCCCEEEEEehHhh-cCCcHHhCCeEEEEECCHHHHHHHHHHcCCC----CH
Confidence 12223344555433332221 11122368999999987 6778889999999999999999999999843 33
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCC
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (303)
+.....+....... +....||+||.|+++
T Consensus 148 ~~~~~r~~~Q~~~~------~~~~~aD~vI~N~~~ 176 (179)
T cd02022 148 EEAEARIASQMPLE------EKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHHhcCCHH------HHHHhCCEEEECcCC
Confidence 34333333322111 135789999998754
No 31
>PLN02422 dephospho-CoA kinase
Probab=99.72 E-value=6.2e-18 Score=142.92 Aligned_cols=170 Identities=22% Similarity=0.246 Sum_probs=106.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHH-------HhhcccCCCCCCcccHHHHHHHHH---
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL-------ARVHEYNFDHPDAFDTEKLLSSME--- 118 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~-------~~~~~~~f~~p~~~d~~~l~~~l~--- 118 (303)
.+|||+|++||||||+++.|++ + |+.+++.|...+.+..... ..++.-.+...+..|...+.+.+-
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~---g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~ 77 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S---GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDP 77 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCH
Confidence 4799999999999999999995 4 8999999988765544321 123333444445566554443321
Q ss_pred -HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 119 -~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
.++.-+.+.+|........+... ....+.+++++|.|+.+ +..+.+.||.+|+|++|.+++++|+.+|++.+....
T Consensus 78 ~~~~~Le~IlHP~V~~~~~~~~~~--~~~~~~~~vv~eipLL~-E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea 154 (232)
T PLN02422 78 SKRQLLNRLLAPYISSGIFWEILK--LWLKGCKVIVLDIPLLF-ETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQA 154 (232)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--HHhcCCCEEEEEehhhh-hcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 11111223445442222111100 11133579999999987 788889999999999999999999999974333222
Q ss_pred HHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
......|+.... ..+.||++|.|+++-+
T Consensus 155 ~~Ri~~Q~~~ee----------k~~~AD~VI~N~gs~e 182 (232)
T PLN02422 155 RNRINAQMPLDW----------KRSKADIVIDNSGSLE 182 (232)
T ss_pred HHHHHHcCChhH----------HHhhCCEEEECCCCHH
Confidence 222222332222 1578999999987544
No 32
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.70 E-value=3.2e-16 Score=140.76 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=88.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhcccC--------CCCCCcccHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKLL 114 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~~--------f~~p~~~d~~~l~ 114 (303)
..+|.+|||+|++|||||||++.|.+.+... .+..++.|+|| ++.++...+...+ .+.|+.+|.....
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY--Lt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~ 286 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY--LTAEGQAELRERNPGNALLELRGNAGSHDLQFSV 286 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc--CChHHHHHHHhhCccchhhcccCCCccccHhhHH
Confidence 3468999999999999999999999988542 47889999999 5555554432111 2347789988888
Q ss_pred HHHHHh----hCCCccccCcccCCCCc----cCCCCce--ecCCCcEEEEeccccccch
Q 022073 115 SSMEKL----RHGQAVDIPNYDFKSYK----NNVFPAR--RVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 115 ~~l~~l----~~~~~v~~p~~~~~~~~----~~~~~~~--~~~~~~vvildg~~~~~d~ 163 (303)
+.+..+ +.++.+.+|.||+..+. |.....+ ...+.+|||+|||+.+..+
T Consensus 287 e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P 345 (460)
T PLN03046 287 ETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKP 345 (460)
T ss_pred HHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCC
Confidence 888777 57888999999999865 4332222 2367899999999998764
No 33
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.70 E-value=1.9e-17 Score=141.28 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH------H-HhhcccCCCCCCcccHHHHHHHHH--
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------L-ARVHEYNFDHPDAFDTEKLLSSME-- 118 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~------~-~~~~~~~f~~p~~~d~~~l~~~l~-- 118 (303)
+.+|||+|++||||||+++.|.+.+ |+.++++|...+.+.... + ..++...+...+.+|...+.+.+=
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~---G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d 77 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH---HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSD 77 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCC
Confidence 3689999999999999999999876 789999998765432211 1 122333333234566555444221
Q ss_pred --HhhCCCccccCcccCCCCccCCCC-------ceecCCCcEEEEeccccccchhh-hhhcCeEEEEecChHHHHHHHHh
Q 022073 119 --KLRHGQAVDIPNYDFKSYKNNVFP-------ARRVNPSDVILLEGILVFHDSRV-RELMNMKIFVDTDADVRLARRIR 188 (303)
Q Consensus 119 --~l~~~~~v~~p~~~~~~~~~~~~~-------~~~~~~~~vvildg~~~~~d~~~-~~~~d~~I~v~~~~~~~~~R~~~ 188 (303)
..+.-+.+.+|.......+..... .....+..++++|.|+.+ +... ...||.+|+|++|.+++++|+.+
T Consensus 78 ~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~-E~~~~~~~~D~iv~V~a~~e~ri~RL~~ 156 (244)
T PTZ00451 78 AQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLF-ETKTFTYFVSASVVVSCSEERQIERLRK 156 (244)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhh-ccCchhhcCCeEEEEECCHHHHHHHHHH
Confidence 111111233443322221111000 000122459999999987 5553 45789999999999999999999
Q ss_pred hCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCC--CCCH
Q 022073 189 RDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG--GDNH 235 (303)
Q Consensus 189 R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~--~~~~ 235 (303)
|++. +.+.............. ..+.||+||.|+ ++-+
T Consensus 157 R~g~----s~eea~~Ri~~Q~~~~e------k~~~aD~VI~N~~~g~~~ 195 (244)
T PTZ00451 157 RNGF----SKEEALQRIGSQMPLEE------KRRLADYIIENDSADDLD 195 (244)
T ss_pred cCCC----CHHHHHHHHHhCCCHHH------HHHhCCEEEECCCCCCHH
Confidence 9643 33333333322221111 267899999988 6543
No 34
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.69 E-value=2.3e-17 Score=137.82 Aligned_cols=170 Identities=21% Similarity=0.310 Sum_probs=102.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH------HHHH-hhcccCCCCCCcccHHHHHHHHH---
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QELA-RVHEYNFDHPDAFDTEKLLSSME--- 118 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~------~~~~-~~~~~~f~~p~~~d~~~l~~~l~--- 118 (303)
.+|||+|++||||||+++.|+. + |+++++.|...+.+.. .++. .++.-.+...+..|...+.+.+=
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~---g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~ 77 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E---GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASP 77 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCH
Confidence 5899999999999999999997 3 7899999965432211 1222 23333333334455444333211
Q ss_pred -HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 119 -~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
.++.-+.+.+|.......++. ......+..++++|.|+.+ +..+.+.+|.+|||++|.+++++|+..|++ .+
T Consensus 78 ~~~~~le~i~hP~v~~~~~~~~--~~~~~~~~~~vv~e~plL~-e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g----~s 150 (200)
T PRK14734 78 EQTALLNAITHPRIAEETARRF--NEARAQGAKVAVYDMPLLV-EKGLDRKMDLVVVVDVDVEERVRRLVEKRG----LD 150 (200)
T ss_pred HHHHHHHHhhCHHHHHHHHHHH--HHHHhcCCCEEEEEeecee-EcCccccCCeEEEEECCHHHHHHHHHHcCC----CC
Confidence 111111233344322221111 0011134578999999977 677888999999999999999999999863 34
Q ss_pred HHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
.+.....+.....+.+ ....||++|+|+++-+
T Consensus 151 ~e~~~~ri~~Q~~~~~------k~~~ad~vI~N~g~~e 182 (200)
T PRK14734 151 EDDARRRIAAQIPDDV------RLKAADIVVDNNGTRE 182 (200)
T ss_pred HHHHHHHHHhcCCHHH------HHHhCCEEEECcCCHH
Confidence 4444444433332222 1478999999886543
No 35
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=1e-16 Score=134.90 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=98.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HHH-hhcccCCCC--CC--cccHHHH-
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------ELA-RVHEYNFDH--PD--AFDTEKL- 113 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~------~~~-~~~~~~f~~--p~--~~d~~~l- 113 (303)
..+.+|||+|++||||||+++.|.+ + ++.+++.|...+.+... ... .++.-.+.. .+ .+|...+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~---g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~ 78 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M---GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIA 78 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C---CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHH
Confidence 4468999999999999999999997 3 78999998655433211 111 122222211 11 1343332
Q ss_pred ---------HHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHH
Q 022073 114 ---------LSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (303)
Q Consensus 114 ---------~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~ 184 (303)
.+.|+.+ .+|.......+.. ......+.+++++|+|+.+ +......||.+|+|++|.+++.+
T Consensus 79 ~~vf~~~~~~~~l~~i------~hp~i~~~~~~~i--~~~~~~~~~vvv~e~pLL~-e~~~~~~~d~ii~V~a~~e~~~~ 149 (208)
T PRK14731 79 QVVFSDPEKLGALNRL------IHPKVFAAFQRAV--DRAARRGKRILVKEAAILF-ESGGDAGLDFIVVVAADTELRLE 149 (208)
T ss_pred HHHhCCHHHHHHHHHH------HCHHHHHHHHHHH--HHHHhcCCCEEEEEeeeee-ecCchhcCCeEEEEECCHHHHHH
Confidence 2333333 3343321111111 0111234478999999766 67778889999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
|+++|+.. +.+........ ..+... ..+.||++|+|+++-+
T Consensus 150 Rl~~R~~~----s~e~~~~Ri~~-q~~~~~-----~~~~ad~vI~N~g~~e 190 (208)
T PRK14731 150 RAVQRGMG----SREEIRRRIAA-QWPQEK-----LIERADYVIYNNGTLD 190 (208)
T ss_pred HHHHcCCC----CHHHHHHHHHH-cCChHH-----HHHhCCEEEECCCCHH
Confidence 99999743 22333322221 111111 1356999999886533
No 36
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.66 E-value=5e-17 Score=134.71 Aligned_cols=172 Identities=23% Similarity=0.312 Sum_probs=103.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH-------HHhhcccCCCCCCcccHHHH-------
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKL------- 113 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~-------~~~~~~~~f~~p~~~d~~~l------- 113 (303)
+.+|||+|.+||||||+++.+++ + |+.++++|.+.+++.... ...++.-..+..+.+|...+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~ 77 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFND 77 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCC
Confidence 57999999999999999999999 5 899999998876433211 12222222211222333322
Q ss_pred ---HHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhC
Q 022073 114 ---LSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 114 ---~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
...|+.+ .+|....... . .......+++++|-|+.. +......+|.+|.|+||++++++|+++|+
T Consensus 78 ~~~~~~Le~i------~hPli~~~~~-~----~~~~~~~~~~~~eiplL~-e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~ 145 (201)
T COG0237 78 PEARLKLEKI------LHPLIRAEIK-V----VIDGARSPYVVLEIPLLF-EAGGEKYFDKVIVVYAPPEIRLERLMKRD 145 (201)
T ss_pred HHHHHHHHHh------hhHHHHHHHH-H----HHHHhhCCceEEEchHHH-hccccccCCEEEEEECCHHHHHHHHHhcC
Confidence 2233332 2233221111 1 111122228889988876 56566669999999999999999999998
Q ss_pred ccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHH
Q 022073 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i 245 (303)
...++........|.....+ ...||+|+.|+++-....+.+...+
T Consensus 146 ~~~~e~~~~~~~~Q~~~~ek----------~~~ad~vi~n~~~i~~l~~~i~~~~ 190 (201)
T COG0237 146 GLDEEDAEARLASQRDLEEK----------LALADVVIDNDGSIENLLEQIEKLL 190 (201)
T ss_pred CCCHHHHHHHHHhcCCHHHH----------HhhcCChhhcCCCHHHHHHHHHHHH
Confidence 43332222333334333332 4889999998875444333333333
No 37
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4.2e-17 Score=138.28 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=120.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------CEEEEeC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------RVVLVNQ 82 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------------~~~~l~~ 82 (303)
++++|++++|.+. +.+..++.++.+|.+++|.||||||||||.+.+.+.+.|. .+-++++
T Consensus 5 i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 4556666666443 3666666669999999999999999999999999988652 2444555
Q ss_pred C---CCCCCCCHHHHHhhccc----CCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEE
Q 022073 83 D---SFYHNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 83 D---~~~~~~~~~~~~~~~~~----~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
- ++-...+..+...++.+ .|..+..-|.+...+.|+.+....- -.+..+|.++.+|+..+++.+.++++++
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 2 22234566676666544 2445566677888888888776543 3456789999999988899999999999
Q ss_pred EeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 154 LEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 154 ldg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
+|||+++.| ......+-+++++-..+ |.++..+.|....
T Consensus 163 LDEP~~gvD--------------~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 163 LDEPFTGVD--------------VAGQKEIYDLLKELRQE-GKTVLMVTHDLGL 201 (254)
T ss_pred ecCCcccCC--------------HHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH
Confidence 999999984 45555666666654333 6666666655544
No 38
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.65 E-value=2.4e-16 Score=126.72 Aligned_cols=177 Identities=18% Similarity=0.324 Sum_probs=121.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v 126 (303)
+..+|||.|.+.|||||||+.|.+.|+ +..+|++|+||+.-..-+...-+-..|+.+++.|++.+.+.+.....+...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~ 80 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN 80 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc
Confidence 457999999999999999999999996 788999999996543333323334467778889999988888766554221
Q ss_pred c-c---CcccCCCCccCCCC-ceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHH
Q 022073 127 D-I---PNYDFKSYKNNVFP-ARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (303)
Q Consensus 127 ~-~---p~~~~~~~~~~~~~-~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (303)
. . ...+.........+ .....+..++|+||-+.+.-+.+.+.+|..|++..|.+++.+|+-.|-.... . .
T Consensus 81 ~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p----~-~ 155 (225)
T KOG3308|consen 81 APEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPP----D-D 155 (225)
T ss_pred cchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCC----C-C
Confidence 1 0 01111111110000 2345678899999999887788889999999999999999999987743111 1 1
Q ss_pred HHHHhh-ccccchhhccccccccc--cEEecCC
Q 022073 202 LDQYSK-FVKPAFDDFILPTKKYA--DIIIPRG 231 (303)
Q Consensus 202 ~~~~~~-~~~p~~~~~i~~~~~~a--D~iI~~~ 231 (303)
. -|.+ .++|.|.++++.....+ |....|+
T Consensus 156 t-gyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 156 T-GYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred C-ccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 1 2333 37899988887655554 6555544
No 39
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.65 E-value=6.5e-16 Score=144.25 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=126.4
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE 93 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~ 93 (303)
++.+|+.+| ||+.+ . . ++.+|+|.|++||||||+++.|++.| ++.+++.|.+|+.++..-
T Consensus 266 A~~~g~~RLIDN~~~-----~----------~-~~~ii~i~G~sgsGKst~a~~la~~l---~~~~~d~g~~YR~~a~~~ 326 (512)
T PRK13477 266 AVRCGSTRLIDNVFL-----M----------K-RQPIIAIDGPAGAGKSTVTRAVAKKL---GLLYLDTGAMYRAVTWLV 326 (512)
T ss_pred EEEeCCeEEEeeeEe-----c----------c-CCcEEEEECCCCCCHHHHHHHHHHHc---CCeEecCCceehHHHHHH
Confidence 456777777 88888 4 5 77899999999999999999999999 789999999997654322
Q ss_pred HHhhcccCCCCCCcccHHHHHHHHHHhhC--------CCccccCcccCCCCccCC---------------------CCce
Q 022073 94 LARVHEYNFDHPDAFDTEKLLSSMEKLRH--------GQAVDIPNYDFKSYKNNV---------------------FPAR 144 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d~~~l~~~l~~l~~--------~~~v~~p~~~~~~~~~~~---------------------~~~~ 144 (303)
.. .+++++++ ..+...+..++. +..+.++.++....-+.. .+..
T Consensus 327 l~--~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~ 399 (512)
T PRK13477 327 LQ--EGIDPQDE-----EALAELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQR 399 (512)
T ss_pred HH--cCcCCcCH-----HHHHHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 12333222 222222222211 112334444333222210 0011
Q ss_pred ecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccC---CCHHHHHHHHhhccccchhhcccccc
Q 022073 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG---RDIATVLDQYSKFVKPAFDDFILPTK 221 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~~p~~~~~i~~~~ 221 (303)
.....-+|+||--.+. .+.+..|++||++++.+++.+|+.++.. .++ .+.+.+.+.+.++..-+..+.+.|..
T Consensus 400 -~~~~~~iV~eGRDigt--vV~P~AdlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy 475 (512)
T PRK13477 400 -IGEKGGLVAEGRDIGT--HVFPDAELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLR 475 (512)
T ss_pred -HhhcCCEEEEccccee--EEcCCCCEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhccccccccc
Confidence 1122348999977653 3446679999999999999999876521 222 24677777777777667777788865
Q ss_pred cc-ccEEecCCCCCH-HHHHHHHHHHH
Q 022073 222 KY-ADIIIPRGGDNH-VAIDLIVQHIR 246 (303)
Q Consensus 222 ~~-aD~iI~~~~~~~-~~~~~~v~~i~ 246 (303)
.. ++++|+++..+. ..++.+++.|+
T Consensus 476 ~a~dai~IDTs~lsieeVv~~Il~~i~ 502 (512)
T PRK13477 476 KADDAIELITDGLSIEEVVDKIIDLYR 502 (512)
T ss_pred ccCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 55 668898665442 34455555554
No 40
>PLN02796 D-glycerate 3-kinase
Probab=99.65 E-value=4.9e-15 Score=131.19 Aligned_cols=117 Identities=27% Similarity=0.455 Sum_probs=89.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhcccC--------CCCCCcccHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKLL 114 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~~--------f~~p~~~d~~~l~ 114 (303)
.+++.+|||+|++||||||+++.|.+.+... .+..++.|+|| ++..+...+.... -+.|.++|.+.+.
T Consensus 97 ~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY--Lt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~ 174 (347)
T PLN02796 97 EIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY--LTAADQAKLAEANPGNALLELRGNAGSHDLALGV 174 (347)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc--cchhhHHHHHhhCcchhhhhcCCCCchhHHHHHH
Confidence 3578999999999999999999999999754 36889999999 4444444433211 1347789999999
Q ss_pred HHHHHhh----CCCccccCcccCCCCc----cCCCCc-ee-cCCCcEEEEeccccccch
Q 022073 115 SSMEKLR----HGQAVDIPNYDFKSYK----NNVFPA-RR-VNPSDVILLEGILVFHDS 163 (303)
Q Consensus 115 ~~l~~l~----~~~~v~~p~~~~~~~~----~~~~~~-~~-~~~~~vvildg~~~~~d~ 163 (303)
+.|..++ .++.+.+|.||++.+. |..... .. ..+.+|||+|||+.+..+
T Consensus 175 e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p 233 (347)
T PLN02796 175 ETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKP 233 (347)
T ss_pred HHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCC
Confidence 9999888 5778999999999865 432212 22 267899999999999865
No 41
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.65 E-value=4e-17 Score=139.07 Aligned_cols=170 Identities=19% Similarity=0.252 Sum_probs=108.0
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC-------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH------------- 87 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~------------- 87 (303)
+++|++++|. ..+.+..++.+++++.+++|.||||||||||+++|++.+++. |.+.++..+...
T Consensus 4 ~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 4 EVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred EEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 3455555554 223455555559999999999999999999999999999863 445555543321
Q ss_pred --------CCCHHHHHhhcccC----CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEE
Q 022073 88 --------NLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 88 --------~~~~~~~~~~~~~~----f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
.++..+...++++. |..+..-|.+...+.|+.+...... .+...|.++.+++.++.+.++++++++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 22233333344332 2223334555666667766554333 345678888888888888889999999
Q ss_pred EeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 154 LEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 154 ldg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
+|||++.+| .......-.++++-..+++.+.-.++|....
T Consensus 162 LDEPTs~LD--------------i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 162 LDEPTSHLD--------------IAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred eCCCccccC--------------HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 999999984 3444444445544333446666666655543
No 42
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.64 E-value=4.7e-17 Score=130.79 Aligned_cols=159 Identities=21% Similarity=0.355 Sum_probs=108.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH-----------------------HHHhhcccCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ-----------------------ELARVHEYNFDH 104 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~-----------------------~~~~~~~~~f~~ 104 (303)
+.+||++|.+||||||+++.+.+ + |+.+++.|...+..-.+ .++.++...|++
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~-~---G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKA-L---GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred CeEEEeecccccChHHHHHHHHH-c---CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC
Confidence 46999999999999999999985 3 89999998654332211 112222333333
Q ss_pred CCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHH
Q 022073 105 PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (303)
Q Consensus 105 p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~ 184 (303)
|+ .++.|+. +.+|.....+.+.. ....+.+.+++++|-|+.+ +..+.+.+..+|.|.||.+.+++
T Consensus 77 ~~------~r~~Ln~------IthP~Ir~em~ke~--~~~~l~G~r~ivlDiPLLF-E~~~~~~~~~tvvV~cd~~~Ql~ 141 (225)
T KOG3220|consen 77 PK------KRQALNK------ITHPAIRKEMFKEI--LKLLLRGYRVIVLDIPLLF-EAKLLKICHKTVVVTCDEELQLE 141 (225)
T ss_pred HH------HHHHHHh------cccHHHHHHHHHHH--HHHHhcCCeEEEEechHHH-HHhHHhheeeEEEEEECcHHHHH
Confidence 32 2333333 34465555444432 1334578999999999988 67889999999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
|++.|+..++......+..|..-..+ .+.||+||+|+++-.
T Consensus 142 Rl~~Rd~lse~dAe~Rl~sQmp~~~k----------~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 142 RLVERDELSEEDAENRLQSQMPLEKK----------CELADVVIDNNGSLE 182 (225)
T ss_pred HHHHhccccHHHHHHHHHhcCCHHHH----------HHhhheeecCCCChH
Confidence 99999955544444444445444332 578999999886554
No 43
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.61 E-value=2.2e-16 Score=139.35 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=108.8
Q ss_pred ccCC-Ccccc-c-ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------
Q 022073 11 EASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------ 75 (303)
Q Consensus 11 ~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------ 75 (303)
+.++ ++.|+ + .-++|+|| + +++|.++|+.|+|||||||+.++|++.+.+.
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~-----~----------i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~ 70 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSF-----E----------VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70 (293)
T ss_pred eecceEEEeCCCCEEEeceeE-----E----------EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCc
Confidence 3445 77887 3 44699999 8 9999999999999999999999999988652
Q ss_pred --------CEEEEeC-CCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCce
Q 022073 76 --------RVVLVNQ-DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 76 --------~~~~l~~-D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~ 144 (303)
.+.++.+ +.+|..++..+...+....+..+...+.+...+.++.+.... ......+|.++.+|+..+.+
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHH
Confidence 2344444 346778888887666544454443455677888888887765 44567899999999988888
Q ss_pred ecCCCcEEEEeccccccchhhh
Q 022073 145 RVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~ 166 (303)
.+.+++++|+|+|++++|+..+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~ 172 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESR 172 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHH
Confidence 8899999999999999987644
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=7.5e-16 Score=125.85 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=100.7
Q ss_pred hhccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCC
Q 022073 9 MIEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~ 85 (303)
|++.++ .+.||+.+. +++|+ + +.+|.++.|+||||||||||+++|..+-.+ .|-..++.+..
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l-----~----------v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISL-----S----------VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcce-----e----------EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 344555 788888875 99999 8 999999999999999999999999886544 35567776544
Q ss_pred CCCCCHHHHHhhcccCCCCCCcc-----------------------cHHHHHHHHHHhhCCCcc-ccC-cccCCCCccCC
Q 022073 86 YHNLTEQELARVHEYNFDHPDAF-----------------------DTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNV 140 (303)
Q Consensus 86 ~~~~~~~~~~~~~~~~f~~p~~~-----------------------d~~~l~~~l~~l~~~~~v-~~p-~~~~~~~~~~~ 140 (303)
.............+..|++.+-| ..+...+.|+.+...... .+| .+|.++.+|+.
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA 146 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA 146 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH
Confidence 32222223333334445442211 123344555555544332 344 68999999998
Q ss_pred CCceecCCCcEEEEeccccccchhhhh
Q 022073 141 FPARRVNPSDVILLEGILVFHDSRVRE 167 (303)
Q Consensus 141 ~~~~~~~~~~vvildg~~~~~d~~~~~ 167 (303)
++++..-+++++++|+|++.+||++..
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHH
Confidence 888888999999999999999998644
No 45
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.60 E-value=5.3e-15 Score=115.26 Aligned_cols=156 Identities=22% Similarity=0.339 Sum_probs=99.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH---HHhhcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~---~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
++|.|.|++||||||+++.|++.+ +..+++...+++++..+. +..+..+.-.+|
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p-------------------- 57 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLKLVSAGTIFREMARERGMSLEEFSRYAEEDP-------------------- 57 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh---CCceeeccHHHHHHHHHcCCCHHHHHHHHhcCc--------------------
Confidence 479999999999999999999999 788888887765432211 111222222222
Q ss_pred cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHH
Q 022073 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (303)
Q Consensus 126 v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (303)
.++.....++. ..+. .+-+|+||-+++|-.. ...|++||+.+|.++|.+|+.+|. |-++.....+.
T Consensus 58 ----~iD~~iD~rq~---e~a~-~~nvVlegrLA~Wi~k--~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~ 123 (179)
T COG1102 58 ----EIDKEIDRRQK---ELAK-EGNVVLEGRLAGWIVR--EYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAET 123 (179)
T ss_pred ----hhhHHHHHHHH---HHHH-cCCeEEhhhhHHHHhc--cccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHH
Confidence 33333333321 1122 4558999999887322 578999999999999999999997 44555555444
Q ss_pred hhcccc---chhhccc---cccccccEEecCCCCCHHHHHHH
Q 022073 206 SKFVKP---AFDDFIL---PTKKYADIIIPRGGDNHVAIDLI 241 (303)
Q Consensus 206 ~~~~~p---~~~~~i~---~~~~~aD~iI~~~~~~~~~~~~~ 241 (303)
..+++. .|.++.. ......|+||+++.-++..+-.+
T Consensus 124 ~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~i 165 (179)
T COG1102 124 VEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLI 165 (179)
T ss_pred HHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHH
Confidence 444333 3333321 12466899999876666444333
No 46
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.60 E-value=9.5e-17 Score=129.48 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=93.0
Q ss_pred hhccCC-Cccccccc--ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC--
Q 022073 9 MIEASS-GVHFSGFH--MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-- 82 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~-- 82 (303)
|+++++ +++|+++. ++|+|| . ...|.+.||.|+|||||||+++.|+..|.|. |.++++.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF-----~----------ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSF-----E----------AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeE-----E----------eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 456667 88999876 699999 8 9999999999999999999999999999763 3333333
Q ss_pred ------------------CCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCC
Q 022073 83 ------------------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFP 142 (303)
Q Consensus 83 ------------------D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~ 142 (303)
-.+|..++.++....-...++-.+.--..+..+..+.+.... +-....||.++.+++..+
T Consensus 66 ~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 66 TVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred cccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 334444554443322111111111000111222222222222 123457899999999888
Q ss_pred ceecCCCcEEEEeccccccchh
Q 022073 143 ARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+.++.++++|+|+.++|..
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHH
Confidence 8999999999999999998643
No 47
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.59 E-value=9.4e-16 Score=140.62 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HH-HhhcccCCCCCCcccHHHHHHHHH---
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------EL-ARVHEYNFDHPDAFDTEKLLSSME--- 118 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~------~~-~~~~~~~f~~p~~~d~~~l~~~l~--- 118 (303)
..|||+|++||||||+++.|++ + |+.++++|...+.+... ++ ..++.-.++..+.+|...|.+.+=
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~---G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~ 77 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L---GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADD 77 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999998 4 89999999876543321 11 123333333345566555444321
Q ss_pred -HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 119 -KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 119 -~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
..+.-+.+.+|..-....+.. ....+..+++.|.++.+ +..+.+.||.+|||++|.+++++|+..|++ .+
T Consensus 78 ~~~~~le~i~hP~I~~~i~~~i----~~~~~~~vvv~eipLL~-E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg----~s 148 (395)
T PRK03333 78 EARAVLNGIVHPLVGARRAELI----AAAPEDAVVVEDIPLLV-ESGMAPLFHLVVVVDADVEVRVRRLVEQRG----MA 148 (395)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH----HhcCCCCEEEEEeeeee-cCCchhhCCEEEEEECCHHHHHHHHHhcCC----CC
Confidence 111111223343321111110 11123346666556544 788889999999999999999999988643 33
Q ss_pred HHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHH
Q 022073 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
.+.....+..... ..+....||++|+|+++.......+.+.++..
T Consensus 149 ~~~a~~ri~~Q~~------~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 149 EADARARIAAQAS------DEQRRAVADVWLDNSGTPDELVEAVRALWADR 193 (395)
T ss_pred HHHHHHHHHhcCC------hHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 3333333322211 11125789999998876544444544455444
No 48
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.58 E-value=6.8e-16 Score=149.78 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=108.0
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|.+.+++++...+.++++|..|+|.|.||||||||+|.|.+.+.|. .+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 348899999999999889999999999999999999999999999999999999762 57
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCccc---HHHHHHHHHHhhCCCcccc----CcccCCCCccCCCCceecCCCc
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFD---TEKLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d---~~~l~~~l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
.++.+|++...-+..+.-.++....+.++-+. ...+.+.+..+..|-...+ ...|.++.+|+..+++.+.+++
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 88888888876666666555443221111110 0112223333333322221 2368888888888888899999
Q ss_pred EEEEeccccccchh
Q 022073 151 VILLEGILVFHDSR 164 (303)
Q Consensus 151 vvildg~~~~~d~~ 164 (303)
++++||+++.+|++
T Consensus 630 ILlLDEaTSaLD~~ 643 (709)
T COG2274 630 ILLLDEATSALDPE 643 (709)
T ss_pred EEEEeCcccccCHh
Confidence 99999999998654
No 49
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.57 E-value=1.2e-15 Score=126.57 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=100.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH------HH-HhhcccCCCCCCcccHHHHHHHHH----
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------EL-ARVHEYNFDHPDAFDTEKLLSSME---- 118 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~------~~-~~~~~~~f~~p~~~d~~~l~~~l~---- 118 (303)
+|||+|.+||||||+++.|++.. ++.+++.|.+.+.+... ++ ..++.-.+...+..|...+.+.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 58999999999999999999875 58899999875443221 11 122322333334455443333221
Q ss_pred HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCH
Q 022073 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 119 ~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~ 198 (303)
.+..-+.+.+|.......+... .......+++++.|... +..+.+.+|.+|+|++|.+++++|+++|++ .+.
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~---~~~~~~~~vvi~~pll~-e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~----~s~ 149 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLA---QFQSKLAYVLLDVPLLF-ENKLRSLCDRVIVVDVSPQLQLERLMQRDN----LTE 149 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHH---HhhcCCCEEEEEchHhh-hCCcHHhCCEEEEEECCHHHHHHHHHHcCC----CCH
Confidence 0111112333443222222210 01112358899998876 457888999999999999999999999973 344
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCC
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~ 233 (303)
+.....+.... +.+ .....||++|.|+++
T Consensus 150 ~~~~~r~~~q~-~~~-----~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 150 EEVQKRLASQM-DIE-----ERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHHHHhcC-CHH-----HHHHhCCEEEECCCC
Confidence 44444443332 211 135679999998864
No 50
>COG4240 Predicted kinase [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=119.15 Aligned_cols=118 Identities=23% Similarity=0.392 Sum_probs=91.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---CEEEEeCCCCCCCCCHHHHHhhccc------CCCCCCcccHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQDSFYHNLTEQELARVHEY------NFDHPDAFDTEKLLS 115 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---~~~~l~~D~~~~~~~~~~~~~~~~~------~f~~p~~~d~~~l~~ 115 (303)
.++|.++||+||.||||||++..|...|... .+..+|.|+|| ++..+...+.+- .-+-|+++|......
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY--lthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY--LTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh--cchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 6679999999999999999999998887543 46889999999 555554433322 134589999999999
Q ss_pred HHHHhhCCC-ccccCcccC----CCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 116 SMEKLRHGQ-AVDIPNYDF----KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 116 ~l~~l~~~~-~v~~p~~~~----~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+|+.+..++ .|.+|.|++ +.++|.....+...+.+++|+|||+.+.+|.
T Consensus 125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPi 178 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPI 178 (300)
T ss_pred HHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccC
Confidence 999998775 468999999 5555544444555568999999999997764
No 51
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.54 E-value=6.1e-14 Score=114.88 Aligned_cols=182 Identities=20% Similarity=0.281 Sum_probs=114.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC----
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG---- 123 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~---- 123 (303)
..+|+|.||+||||||+|+.|++.| ++.+++...+|+.++..-+.. ...+ -|.+.+.+.+..+...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~L---g~~yldTGamYRa~a~~~l~~--~~~~-----~d~~~~~~l~~~~~i~f~~~ 73 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKL---GFHYLDTGAMYRAVALAALKH--GVDL-----DDEDALVALAKELDISFVND 73 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHh---CCCeecccHHHHHHHHHHHHc--CCCC-----ccHHHHHHHHHhCCceeccc
Confidence 3799999999999999999999999 789999999887554322111 1111 1222222222221110
Q ss_pred -------Ccc-----------------ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecCh
Q 022073 124 -------QAV-----------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDA 179 (303)
Q Consensus 124 -------~~v-----------------~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~ 179 (303)
+.+ .+|.......++ +.......+-+|+||--.+ ..+.+..+++||+++++
T Consensus 74 ~~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~---Qr~~a~~~~~~V~dGRDiG--TvV~PdA~lKiFLtAS~ 148 (222)
T COG0283 74 DRVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKL---QRAFAKNGPGIVADGRDIG--TVVFPDAELKIFLTASP 148 (222)
T ss_pred ceEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHH---HHHHHhcCCCEEEecCCCc--ceECCCCCeEEEEeCCH
Confidence 000 111111111111 1122234466899997665 45667788999999999
Q ss_pred HHHHHHHHhhCccccC--CCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCCHHHHHHHHHHHHHH
Q 022073 180 DVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 180 ~~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
++|.+|+.+-.. ..| ...+.+......+..-+..+-+.|.+...| ++|+++.. .+++++++|...
T Consensus 149 e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~m---sieeVv~~il~~ 216 (222)
T COG0283 149 EERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSL---SIEEVVEKILEL 216 (222)
T ss_pred HHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCC---cHHHHHHHHHHH
Confidence 999999987643 333 226788888888888888888999988888 55565543 355555555433
No 52
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.51 E-value=1.7e-13 Score=112.55 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=116.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------C-EEEEeCCCCCCCCCHHHHHhh-----cccCCCCCCccc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------R-VVLVNQDSFYHNLTEQELARV-----HEYNFDHPDAFD 109 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------~-~~~l~~D~~~~~~~~~~~~~~-----~~~~f~~p~~~d 109 (303)
.+...++|++|++|+||||++..+.+.++.. . ..++++|.|+ ++.+++..+ +..-.+.|.+||
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFH--lsr~~LD~f~dP~~AharRGapwTFD 193 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFH--LSRRCLDLFKDPQTAHARRGAPWTFD 193 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchh--hhHHHHHhhcChHHHHhhcCCCcccC
Confidence 4456799999999999999999999976532 2 3569999998 555554322 112234577899
Q ss_pred HHHHHHHHHHhh--CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh----hhhhcCeEEEEecChHHHH
Q 022073 110 TEKLLSSMEKLR--HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----VRELMNMKIFVDTDADVRL 183 (303)
Q Consensus 110 ~~~l~~~l~~l~--~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~----~~~~~d~~I~v~~~~~~~~ 183 (303)
.+.+.+.++.++ ....+..|.|+++.+..+...........++|+||-+.+++.. +.+.+|.+.|++++.++..
T Consensus 194 ~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~ 273 (323)
T KOG2702|consen 194 SNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAE 273 (323)
T ss_pred HHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHH
Confidence 999999999888 4457889999999999987665556778999999999988764 5677899999999999999
Q ss_pred HHHHhhCcc
Q 022073 184 ARRIRRDTV 192 (303)
Q Consensus 184 ~R~~~R~~~ 192 (303)
+|..+|...
T Consensus 274 ~RVa~RHl~ 282 (323)
T KOG2702|consen 274 ERVAKRHLQ 282 (323)
T ss_pred HHHHHHhhc
Confidence 999999843
No 53
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.51 E-value=8.8e-15 Score=119.51 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=111.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV- 126 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v- 126 (303)
..+|+|.|+.|+|||||++.|++.++..-..-...|+-+- ..=++...++.|...--|-..++.+..+.+..+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L---~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~ 80 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFL---DLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNIL 80 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHH---HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4699999999999999999999999743222222232110 000111111222111112223334444444333211
Q ss_pred ccCcccCC-CCccCCCCceecCCCcEEEEecccccc---chhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHH
Q 022073 127 DIPNYDFK-SYKNNVFPARRVNPSDVILLEGILVFH---DSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (303)
Q Consensus 127 ~~p~~~~~-~~~~~~~~~~~~~~~~vvildg~~~~~---d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~ 202 (303)
..++|... .......+...+.+.++=.+++.+... -+.....+|+.||++|+.++.++|+.+|++.-+......-
T Consensus 81 drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~- 159 (216)
T COG1428 81 DRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN- 159 (216)
T ss_pred CcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccch-
Confidence 22233222 222222222233344443444444310 0112236799999999999999999999643322222222
Q ss_pred HHHhhccccchhhccccccccccEEecCC----CCCHHHHHHHHHHHHHHhc
Q 022073 203 DQYSKFVKPAFDDFILPTKKYADIIIPRG----GDNHVAIDLIVQHIRTKLG 250 (303)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~----~~~~~~~~~~v~~i~~~l~ 250 (303)
.+|.+.....|+.|+..+..+.++.|+.+ ..++.+++.++..|.+.+.
T Consensus 160 ~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 160 KDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLK 211 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHh
Confidence 56888888899999988877888888644 3467888888888887764
No 54
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-14 Score=137.51 Aligned_cols=176 Identities=13% Similarity=0.204 Sum_probs=123.1
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC--------------
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-------------- 82 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~-------------- 82 (303)
|.++|+||+|+|+.. +.|...+.+.++++|.++++.|||||||||++.+|.+.+.|. |-+.++.
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 458899999999977 668999999999999999999999999999999999999874 3344443
Q ss_pred ------CCCCCCCCHHHHHhhcccCCCCCCcccHHHH---------HHHHHHhhCCCcccc----CcccCCCCccCCCCc
Q 022073 83 ------DSFYHNLTEQELARVHEYNFDHPDAFDTEKL---------LSSMEKLRHGQAVDI----PNYDFKSYKNNVFPA 143 (303)
Q Consensus 83 ------D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l---------~~~l~~l~~~~~v~~----p~~~~~~~~~~~~~~ 143 (303)
+.....-+..++.. |+.+. .+.+.+ .+.+..+..|-+... ...|.+++||..+++
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~-----YG~~~-~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIA-----YGLDN-ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred eeeeeccceeecccHHHHHh-----cCCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 32222222222222 33232 222222 234455555543322 247889999988888
Q ss_pred eecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccc
Q 022073 144 RRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (303)
+.+.++.++|+||.+..+ |+..|-..+..+.|. ..+++...+.|...- .+.
T Consensus 618 ALlr~P~VLILDEATSAL--------------DaeSE~lVq~aL~~~--~~~rTVlvIAHRLST-------------V~~ 668 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSAL--------------DAESEYLVQEALDRL--MQGRTVLVIAHRLST-------------VRH 668 (716)
T ss_pred HHhcCCCEEEEechhhhc--------------chhhHHHHHHHHHHh--hcCCeEEEEehhhhH-------------hhh
Confidence 999999999999999988 777777777777653 234666666676654 467
Q ss_pred ccEEec
Q 022073 224 ADIIIP 229 (303)
Q Consensus 224 aD~iI~ 229 (303)
||.|+.
T Consensus 669 Ad~Ivv 674 (716)
T KOG0058|consen 669 ADQIVV 674 (716)
T ss_pred ccEEEE
Confidence 886554
No 55
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=2.8e-14 Score=118.46 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=97.7
Q ss_pred hhhhccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC
Q 022073 7 VDMIEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD 83 (303)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D 83 (303)
...++.+. ++.||.-.+ +|++| + +.++.+.+|.|+|||||||+++.+.+++.|. |-+.+...
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l-----~----------V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDL-----D----------VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeeecCCEEEecCcee-----e----------ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence 34466777 888888665 99999 8 9999999999999999999999999999864 55666666
Q ss_pred CCCCCCCHHHHHhh---cccCCCCCC-------------------cccHHH----HHHHHHHhhCCCcc--ccC-cccCC
Q 022073 84 SFYHNLTEQELARV---HEYNFDHPD-------------------AFDTEK----LLSSMEKLRHGQAV--DIP-NYDFK 134 (303)
Q Consensus 84 ~~~~~~~~~~~~~~---~~~~f~~p~-------------------~~d~~~----l~~~l~~l~~~~~v--~~p-~~~~~ 134 (303)
+ +..++..+...+ -...|+.-. ...... ....|+.......+ .+| .+|.+
T Consensus 71 ~-i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGG 149 (263)
T COG1127 71 D-IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGG 149 (263)
T ss_pred c-hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcch
Confidence 6 444555444221 122222210 111222 22233333333221 334 68999
Q ss_pred CCccCCCCceecCCCcEEEEeccccccchh
Q 022073 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 135 ~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+|+..+++.+.+++++++|+|++++||-
T Consensus 150 M~KRvaLARAialdPell~~DEPtsGLDPI 179 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTSGLDPI 179 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCcc
Confidence 999988888888999999999999999884
No 56
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.50 E-value=8.2e-14 Score=111.62 Aligned_cols=144 Identities=12% Similarity=0.048 Sum_probs=95.5
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE--------------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL-------------------- 79 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~-------------------- 79 (303)
++|++++.+|+.. ++-+.+++.++.++.++.|+|+||||||||+++|.....|. |-..
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 4577788888776 56777778889999999999999999999999999987653 2222
Q ss_pred ---EeCCCC-CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEE
Q 022073 80 ---VNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 80 ---l~~D~~-~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
+.+|.- ....+..+..++.-..-+.+..--..+..+.|+........ ..+.+|.+..||+.++.+.+..+++++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 222211 11222222222211111112222233445566655544332 345789999999999899999999999
Q ss_pred Eeccccccchhh
Q 022073 154 LEGILVFHDSRV 165 (303)
Q Consensus 154 ldg~~~~~d~~~ 165 (303)
.|+|+..+||..
T Consensus 161 ADEPTGNLDp~~ 172 (223)
T COG2884 161 ADEPTGNLDPDL 172 (223)
T ss_pred ecCCCCCCChHH
Confidence 999999998754
No 57
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.7e-14 Score=119.83 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=93.8
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC----------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------- 82 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------- 82 (303)
.+.|++.. ++|+|| + +.+|.+++|.||||||||||.+.+++...+. |.+.++.
T Consensus 10 ~~~f~~~~vl~~i~L-----~----------v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 10 SKSFGGVEVLEDINL-----S----------VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred EEEeCceEEecccee-----E----------ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCE
Confidence 56676655 388888 7 9999999999999999999999999988653 2233322
Q ss_pred ------CCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-ccC-cccCCCCccCCCCceecCCCcEEEE
Q 022073 83 ------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 83 ------D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v-~~p-~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+..++..+..++..++-..-..+..-..+...+.|+.+.....- .+| ..|.++.||+.++++.+..++++++
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 23333344444433322111112222234566777776654432 344 6899999999888899999999999
Q ss_pred eccccccchhhhh
Q 022073 155 EGILVFHDSRVRE 167 (303)
Q Consensus 155 dg~~~~~d~~~~~ 167 (303)
|+|+..+|...+.
T Consensus 155 DEPFgALDalTR~ 167 (248)
T COG1116 155 DEPFGALDALTRE 167 (248)
T ss_pred cCCcchhhHHHHH
Confidence 9999999876543
No 58
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.50 E-value=2.5e-13 Score=107.78 Aligned_cols=144 Identities=20% Similarity=0.328 Sum_probs=95.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
+|.|+|++||||||+|+.|++.+ ++.+++.|... ..+......... +...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~~~~~~~~i~----~e~~~~~~~~~~------~~~~i~~~l~~~~~------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GLPYLDTGGIR----TEEVGKLASEVA------AIPEVRKALDERQR------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCceeccccCC----HHHHHHHHHHhc------ccHhHHHHHHHHHH-------
Confidence 58999999999999999999998 67888888432 222222111110 01112222221110
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccc-cCCCHHHHHHHHhhc
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKF 208 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~-~~~~~~~~~~~~~~~ 208 (303)
.....+.+|+||.++.+. +.+.+|++||+++|++.+.+|+.+|.... ++.+.+....++...
T Consensus 61 ---------------~~~~~~~~Vidg~~~~~~--~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 61 ---------------ELAKKPGIVLEGRDIGTV--VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred ---------------HHhhCCCEEEEeeeeeeE--EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 011123478898876542 24568899999999999999999976332 356778888888888
Q ss_pred cccchhhcccccc-ccccEEecC
Q 022073 209 VKPAFDDFILPTK-KYADIIIPR 230 (303)
Q Consensus 209 ~~p~~~~~i~~~~-~~aD~iI~~ 230 (303)
..+.+..|+.++. ...|++|++
T Consensus 124 d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 124 DERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred HHHhhhcccccccCCCCcEEEeC
Confidence 8888889988886 446688865
No 59
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.49 E-value=1.7e-14 Score=139.77 Aligned_cols=140 Identities=13% Similarity=0.159 Sum_probs=101.6
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EE
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VV 78 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~~ 78 (303)
.++++|++|+|++.+.+.....+..+++|..++|+|+||||||||++.|.+.++|. | +.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 48899999999877678999999999999999999999999999999999998763 2 34
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~~ 145 (303)
++++|.+..+-+..+...++ .|+.++.+.+.+.++. +..|-+..+ ..+|.++.+|...+++.
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred EEccCceeecchHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 55555555444444443332 2233455555544443 333322222 34778888888777888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
..+++++++|||++.+|+.
T Consensus 496 l~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 496 LRDSPILILDEATSALDTE 514 (582)
T ss_pred HhCCCEEEEECccccCCHH
Confidence 8999999999999998654
No 60
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.4e-14 Score=116.34 Aligned_cols=139 Identities=9% Similarity=0.196 Sum_probs=92.2
Q ss_pred ccCC-Cccccccc-----ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC
Q 022073 11 EASS-GVHFSGFH-----MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD 83 (303)
Q Consensus 11 ~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D 83 (303)
..++ ++.|++-. ++++|| + +.+|.++||.|+||||||||++.|++...+. |-+.++..
T Consensus 5 ~v~nl~~~y~~~~~~~~~l~~VS~-----~----------i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 5 SVRNLSIVYGGGKFAFHALNNVSL-----E----------IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred EEeceEEEecCCcchhhhhcceeE-----E----------ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 3444 55555544 477777 6 9999999999999999999999999988653 45666664
Q ss_pred CCCCCCCHHHHHhhcccCCCCCCc-c-------------------c--HHHHHHHHHHhhCCCcc--cc-CcccCCCCcc
Q 022073 84 SFYHNLTEQELARVHEYNFDHPDA-F-------------------D--TEKLLSSMEKLRHGQAV--DI-PNYDFKSYKN 138 (303)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~f~~p~~-~-------------------d--~~~l~~~l~~l~~~~~v--~~-p~~~~~~~~~ 138 (303)
...+..........-+..|++|.. + + ..+..+.|..+...... .. ..+|.++.+|
T Consensus 70 ~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred ccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 443221111222223344555431 0 0 11234555555554433 23 3689999999
Q ss_pred CCCCceecCCCcEEEEeccccccchh
Q 022073 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 139 ~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..++++...+++++|+|||+..+|..
T Consensus 150 iaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhhcHH
Confidence 88888888999999999999998764
No 61
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=5.1e-14 Score=113.42 Aligned_cols=162 Identities=16% Similarity=0.216 Sum_probs=114.9
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------ 86 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~------ 86 (303)
+++|++-. ++++|+ . ++++.+.++.||||+|||||+..++++++.. |.+.+++-+.-
T Consensus 8 ~K~y~~~~vl~~isl-----~----------i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 8 SKSYGTKVVLDDVSL-----D----------IPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred hHhhCCEEeecccee-----e----------ecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH
Confidence 66666633 478888 7 9999999999999999999999999998743 44555553322
Q ss_pred ---------------CCCCHHHHHhhcccCCC--CCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecC
Q 022073 87 ---------------HNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 87 ---------------~~~~~~~~~~~~~~~f~--~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~ 147 (303)
-.++.+++..+++|.|. .+..-|+....+.++-+.... .-.+..+|.++.+|...+....+
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence 12334455566666554 344566777777777665432 33556789999999877778889
Q ss_pred CCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHH
Q 022073 148 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (303)
+.+++++|+|++.+ |.-..+.+-..++|-..+.+++...++|..
T Consensus 153 dTdyvlLDEPLNNL--------------DmkHsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 153 DTDYVLLDEPLNNL--------------DMKHSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred cCcEEEecCccccc--------------chHHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 99999999999987 455566666677776556677766665544
No 62
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=6.5e-14 Score=119.08 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=97.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
+.+++++++|++. .+.+..++..+.++..++|.|+|||||||+++.|++.+.|. |.+.++.-+........+....-.
T Consensus 4 i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred EEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 3456777777665 55666777779999999999999999999999999999875 445454433221122333444444
Q ss_pred cCCCCCCc-------------------cc----HHHHHHHHHHhhCCCccc--cCcccCCCCccCCCCceecCCCcEEEE
Q 022073 100 YNFDHPDA-------------------FD----TEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 100 ~~f~~p~~-------------------~d----~~~l~~~l~~l~~~~~v~--~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+.|++|+. .. ..+..+.+.......... .-..|.++.+|+.++...+.+++++|+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 55555532 11 123444555544433332 235688889998888888899999999
Q ss_pred eccccccchhh
Q 022073 155 EGILVFHDSRV 165 (303)
Q Consensus 155 dg~~~~~d~~~ 165 (303)
|+|++++|+..
T Consensus 163 DEPta~LD~~~ 173 (235)
T COG1122 163 DEPTAGLDPKG 173 (235)
T ss_pred cCCCCCCCHHH
Confidence 99999997754
No 63
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.46 E-value=1.5e-14 Score=143.14 Aligned_cols=140 Identities=15% Similarity=0.210 Sum_probs=101.8
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|++.+.+.+...+..+++|..|+|+|+||||||||++.|++.+.|. .+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 358899999999887778999999999999999999999999999999999998753 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++..++ .|+ .+.+.+.+.++. +..|-...+ ..+|.++.+|...+++
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~-----~~~-~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLW-----DPT-IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred eEEecCChhhhccHHHHhhCC-----CCC-CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 556666665544554444332 222 344444444433 222222211 2467788888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|||++.+|+.
T Consensus 630 ll~~p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPE 649 (710)
T ss_pred HhhCCCEEEEECccccCCHH
Confidence 88999999999999998654
No 64
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.46 E-value=2.8e-14 Score=140.65 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=100.6
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|++.+.+.+...+..+++|..++|+|+||||||||++.|.+.+.|. .+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 358899999999877678999999999999999999999999999999999998763 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..+...++ +| .+.+.+.+.++. +..|-+..+ ..+|.++.+|...+++
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred EEEccCCccCcccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 555555555444444443332 22 344444444443 222222211 2467788888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|||++.+|+.
T Consensus 603 ll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HhcCCCEEEEeCCccCCCHH
Confidence 88999999999999998654
No 65
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.2e-13 Score=122.39 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=103.6
Q ss_pred Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 022073 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (303)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------------ 75 (303)
.+.|+.. .++++|+ + +..|.+++|.|||||||||++++|++...+.
T Consensus 10 ~K~yg~~~~l~~i~l-----~----------i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 10 RKSFGSFEVLKDVNL-----D----------IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEcCCceeeecceE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH
Confidence 6778877 7788888 7 9999999999999999999999999988652
Q ss_pred -CEEEEeCC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 76 -RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 76 -~~~~l~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
++.++.++ ..|+.++..++..++-..-..|..-...+..+..+.+...... ....+|.++.||+..+++.+..+++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 33333333 3445555555444332222222222233444555544444332 2346899999999888889999999
Q ss_pred EEEeccccccchhhhhhc------------CeEEEEecChHHH
Q 022073 152 ILLEGILVFHDSRVRELM------------NMKIFVDTDADVR 182 (303)
Q Consensus 152 vildg~~~~~d~~~~~~~------------d~~I~v~~~~~~~ 182 (303)
+++|+|++.+|..++..+ -..|||+=|....
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA 197 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA 197 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH
Confidence 999999998888765322 2457776655554
No 66
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2e-14 Score=121.63 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------CCCCCHHHHHhhcccCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------YHNLTEQELARVHEYNFD 103 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------------~~~~~~~~~~~~~~~~f~ 103 (303)
.+.+|.+++|+|+||||||||++.|++.+.+. |-+.++..+. +...+..+...+....+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC
Confidence 39999999999999999999999999987642 3333332111 111222222111110000
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.......+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~ 164 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 00001112334445554433222 22467888888887778888999999999999999654
No 67
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.45 E-value=5.7e-14 Score=135.83 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=101.2
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++|+|++...+....++..+++|..|+|+|+||||||||++.|.+.+.+. | +
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 358899999999776667899999999999999999999999999999999998763 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+..+-+..+...++ +++.++.+.+.+.++. +..|-+..+ ..+|.++.+|...+++
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~-----~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYG-----RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred eEEccCcccccccHHHHHhcC-----CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 455555555444444433322 2223555555554443 222222211 2478888888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|||++.+|+.
T Consensus 484 ll~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNE 503 (571)
T ss_pred HhcCCCEEEEeCccccCCHH
Confidence 88999999999999998654
No 68
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.44 E-value=2e-14 Score=137.66 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=100.1
Q ss_pred cccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 022073 18 FSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~ 76 (303)
.+.++++|++|+|++...+...+.+..+++|..++|+|+||||||||++.|.+.+++. .
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 3468999999999876667899999999999999999999999999999999988763 2
Q ss_pred EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCccc----cCcccCCCCccCCCCc
Q 022073 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYDFKSYKNNVFPA 143 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~----~p~~~~~~~~~~~~~~ 143 (303)
+.++++|.+...-+..+...++. |. .+.+.+.+.++ .+..|-+.. -..+|.++.+|...++
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLAR-----PD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccC-----CC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 44555555554444444443322 21 22333333333 232222221 1347788888888888
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+...+++++++|+|++.+|+.
T Consensus 472 al~~~~~ililDE~ts~lD~~ 492 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAE 492 (529)
T ss_pred HHhcCCCEEEEeCcccccCHH
Confidence 888999999999999998654
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.44 E-value=7.4e-14 Score=118.50 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=76.5
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------------CCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------------YHNLT 90 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------------------~~~~~ 90 (303)
.....+..+.++.+++|+|+||||||||++.|++.+++. |-+.++..+. +...+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 334444449999999999999999999999999988653 3333333211 11122
Q ss_pred HHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...+.............+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHH
Confidence 222211111000000000112344455555433222 23457888888887778888999999999999999654
No 70
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.44 E-value=1.7e-14 Score=142.42 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=99.9
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|++...+.+...+..+++|..|+|+|+||||||||++.|++.+.+. .+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 358899999999876678899999999999999999999999999999999998753 23
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..+...++ +|+ .+.+.+.+.++ .+..|-+..+ ..+|.++.+|...+++
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALG-----APY-ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred EEECCChhhhhhhHHHHHhCC-----CCC-CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 455555555444444443332 232 34444444433 3332322211 2477788888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++|+|+|++.+|+.
T Consensus 616 ll~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHH
Confidence 88999999999999998654
No 71
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.44 E-value=3.5e-14 Score=136.05 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=101.2
Q ss_pred cccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------CE
Q 022073 18 FSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RV 77 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------------------~~ 77 (303)
.+.++++|++|+|++.. +.+.+.+..+++|..++|+|+||||||||++.|.+.+.+. .+
T Consensus 332 ~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 332 KPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred CceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 34688999999997543 6899999999999999999999999999999999988753 23
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++..++. |+ .+.+.+.+.++. +..|-+..+ ..+|.++.+|...+++
T Consensus 411 ~~V~Q~~~lF~~TI~eNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa 484 (529)
T TIGR02868 411 SVFAQDAHLFDTTVRDNLRLGR-----PD-ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA 484 (529)
T ss_pred EEEccCcccccccHHHHHhccC-----CC-CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence 4566666665555555544432 22 334444444443 323322221 2478888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++|+|||++.+|++
T Consensus 485 ll~~~~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 485 LLADAPILLLDEPTEHLDAG 504 (529)
T ss_pred HhcCCCEEEEeCCcccCCHH
Confidence 88999999999999998654
No 72
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.44 E-value=6.8e-14 Score=118.57 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=74.9
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC------------------------CCCCCHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------------------------YHNLTEQ 92 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------------------------~~~~~~~ 92 (303)
....+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 98 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVY 98 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHH
Confidence 33344449999999999999999999999999988652 3333333211 1111221
Q ss_pred HHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+...+....+..+.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 172 (216)
T TIGR00960 99 DNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPE 172 (216)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 1111110000000000112333444444433222 22357888888887778888999999999999999654
No 73
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.44 E-value=8.9e-14 Score=117.41 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=72.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC----------------------CCCCCHHHHHhhcccC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF----------------------YHNLTEQELARVHEYN 101 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~----------------------~~~~~~~~~~~~~~~~ 101 (303)
+.++.+++|.|+||||||||++.|++.+.+. |-+.++..+. +...+..+........
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~ 103 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999987642 3333333211 1112222211111000
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+..........+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 168 (211)
T cd03225 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168 (211)
T ss_pred cCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0000000112233444444433222 23457888888887777888999999999999999654
No 74
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.43 E-value=6.9e-14 Score=124.55 Aligned_cols=141 Identities=19% Similarity=0.179 Sum_probs=88.2
Q ss_pred hccCC-Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------
Q 022073 10 IEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------- 76 (303)
Q Consensus 10 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------- 76 (303)
++.++ ++.|++.. ++|+|| + +.+|.++||.|+|||||||+++.|++.+.+. |
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl-----~----------i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSF-----H----------VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 (306)
T ss_pred EEEEeEEEEECCeEEEecceE-----E----------EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc
Confidence 33444 55565433 466666 6 9999999999999999999999999988653 2
Q ss_pred ---------EEEEeCC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCce
Q 022073 77 ---------VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 77 ---------~~~l~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~ 144 (303)
+.++.++ .++..++..+........+..+..-......+.++.+.... ......+|.++.+++..+.+
T Consensus 73 ~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred cchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 2333333 23333444444322111111111101122334445444332 22345688888888888888
Q ss_pred ecCCCcEEEEeccccccchhh
Q 022073 145 RVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~ 165 (303)
.+.+++++++|+|++++|+..
T Consensus 153 L~~~P~lllLDEPt~gLD~~~ 173 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQA 173 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHH
Confidence 889999999999999998753
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=2.7e-14 Score=121.38 Aligned_cols=123 Identities=15% Similarity=0.018 Sum_probs=76.7
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------EEEEeCCC-CCCCCCHHHHHhhcccCCCC
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------VVLVNQDS-FYHNLTEQELARVHEYNFDH 104 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------~~~l~~D~-~~~~~~~~~~~~~~~~~f~~ 104 (303)
+..+.+|.+++|+|+||||||||++.|++.+.+. | +.++.++. ++...+..+...+....+..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 3339999999999999999999999999987542 2 22333332 22223444332221111110
Q ss_pred CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 105 PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 105 p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~ 165 (220)
T cd03293 104 PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 1111123344555555443222 23467888888887778888999999999999999654
No 76
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.2e-13 Score=118.39 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=83.1
Q ss_pred cccCcccccCCCC--CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------
Q 022073 22 HMDGLEVRNKETG--QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------------- 85 (303)
Q Consensus 22 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------------- 85 (303)
++++++++|++.. .+....++..+.++.+++|+|+||||||||++.|++.+.+. |-+.++..+.
T Consensus 7 ~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (233)
T PRK11629 7 QCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRN 86 (233)
T ss_pred EEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence 4455555554321 23455555559999999999999999999999999987642 3333332211
Q ss_pred ------------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 86 ------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
+...+..+...+.............+.+.+.++.+...... ....+|.++.+++..+.+.+.++++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 166 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11122222221110000000001112334455555443222 2235778888887777778899999
Q ss_pred EEEeccccccchh
Q 022073 152 ILLEGILVFHDSR 164 (303)
Q Consensus 152 vildg~~~~~d~~ 164 (303)
+++|+|++++|+.
T Consensus 167 llLDEPt~~LD~~ 179 (233)
T PRK11629 167 VLADEPTGNLDAR 179 (233)
T ss_pred EEEeCCCCCCCHH
Confidence 9999999999654
No 77
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.43 E-value=3.7e-14 Score=137.54 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=99.6
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--------------------EE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--------------------VV 78 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--------------------~~ 78 (303)
+.+.++|++|.|.+. .+.+...+..+++|..++|+|+||||||||++.|.+.++..| +.
T Consensus 348 ~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 348 VTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred ceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE
Confidence 358899999866543 468899999999999999999999999999999999984332 45
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHH---------HHHhhCCCcccc----CcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~---------l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~ 145 (303)
++++|.+...-+..++..++. |+ .+.+.+.+. +..+..|-+..+ ..+|.++.+|...+++.
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~-----~~-~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGN-----PD-ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCC-----CC-CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 666666665555555544432 22 333333333 333433333222 34788888998888888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++|+|++++.+|++
T Consensus 501 l~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred hcCCCEEEEeCCccCCCHH
Confidence 9999999999999998654
No 78
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.43 E-value=1.1e-13 Score=113.21 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=80.8
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccC
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYN 101 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~ 101 (303)
++|++++|++...+.....+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ............+.
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~~~ 81 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-QWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-cCCHHHHHhheEEE
Confidence 34444444322223344444459999999999999999999999999988653 44555443221 12222332333445
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+.-+.. .+.+.+ +|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 82 ~q~~~~~~~-tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~ 130 (173)
T cd03246 82 PQDDELFSG-SIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVE 130 (173)
T ss_pred CCCCccccC-cHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHH
Confidence 554432221 122111 7788888887778888999999999999999654
No 79
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.42 E-value=6.9e-14 Score=135.07 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=99.8
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++|+|++...+.+...+..+++|..++|.|+||||||||++.|++.+.+. | +
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 468899999999766557899999999999999999999999999999999998753 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc------------ccCcccCCCCccCCCCcee
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV------------DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v------------~~p~~~~~~~~~~~~~~~~ 145 (303)
.++++|.+...-+..++..++ .|+ .+.+.+.+.++.....+.+ .-..+|.++.+|...+++.
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~-----~~~-~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLA-----APN-ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred eEEcccchhhcccHHHHhhcC-----CCc-cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 455555555444444433322 222 3444555555443322211 1124677888888777888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++.+|+.
T Consensus 491 l~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred hcCCCEEEEeCCcccCCHH
Confidence 8999999999999998554
No 80
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=5.5e-13 Score=110.55 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=89.5
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---Hhh
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---ARV 97 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~~~ 97 (303)
++++++.+|+ ...+.+..++..++++.+|+|.|+||||||||++.|.+..++. |-+++...+... +...+. ...
T Consensus 5 ~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~-~~~k~lr~~r~~ 82 (258)
T COG3638 5 EVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK-LKGKELRKLRRD 82 (258)
T ss_pred EEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc-cchHHHHHHHHh
Confidence 4455555554 2223445555559999999999999999999999999977653 334444332221 222211 111
Q ss_pred cccCCCCCC------------------------------cccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCcee
Q 022073 98 HEYNFDHPD------------------------------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 98 ~~~~f~~p~------------------------------~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~ 145 (303)
..+.|+.+. .-|.....+.|+.+...+.. ....+|.++.+|+.++++.
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 122232221 12334444555555443322 3356899999999999999
Q ss_pred cCCCcEEEEeccccccchhh
Q 022073 146 VNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~~ 165 (303)
++++++++.|+|.+.+||..
T Consensus 163 ~Q~pkiILADEPvasLDp~~ 182 (258)
T COG3638 163 VQQPKIILADEPVASLDPES 182 (258)
T ss_pred hcCCCEEecCCcccccChhh
Confidence 99999999999999998864
No 81
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.42 E-value=8.9e-14 Score=116.36 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=78.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHh----hcccCCCCCCc------------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR----VHEYNFDHPDA------------ 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~----~~~~~f~~p~~------------ 107 (303)
+++|.+++|.||||||||||++.|.+...|. +.+.+...+.. .++..+... .-.+.|+...-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~-~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT-KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC-cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 9999999999999999999999999988764 34455553322 233333221 12334433110
Q ss_pred ----------ccHHHHHHHHHHhhCCCcc--ccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ----------FDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ----------~d~~~l~~~l~~l~~~~~v--~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.........+..+..+... ..| .+|.++.+|+.++++.+.++++++.|+|+..+|..
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 0112233334443443222 334 78999999999989999999999999999988754
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5e-14 Score=121.47 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=75.0
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---------------------CCCCCHHHHHhh
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF---------------------YHNLTEQELARV 97 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~---------------------~~~~~~~~~~~~ 97 (303)
.++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..+....
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 98 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL 98 (242)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHH
Confidence 333349999999999999999999999999987653 3333333221 112222222111
Q ss_pred cccCCCCCCcccHHHHHHHHHHhhCCC----ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 98 ~~~~f~~p~~~d~~~l~~~l~~l~~~~----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.............+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 169 (242)
T cd03295 99 VPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 100000000001123445555554432 1123457888888887778888999999999999998654
No 83
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.41 E-value=1.2e-13 Score=124.51 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=89.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------------------EEEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------------VVLV 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------------------~~~l 80 (303)
++++|++.+|++. +.+..++..+.+|.++||+|+||||||||++.|++.+.+. | +.++
T Consensus 42 i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred EEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 3445555555321 2445555559999999999999999999999999988652 2 3334
Q ss_pred eCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEecc
Q 022073 81 NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (303)
Q Consensus 81 ~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~ 157 (303)
.++. ++..++..+........+..+..-......+.++.+.... ......+|.++.+++..+.+.+.+++++|+|+|
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 4432 3344555444332111111111111223334454444332 233456888998988888888899999999999
Q ss_pred ccccchhh
Q 022073 158 LVFHDSRV 165 (303)
Q Consensus 158 ~~~~d~~~ 165 (303)
++++|+..
T Consensus 200 t~gLD~~~ 207 (340)
T PRK13536 200 TTGLDPHA 207 (340)
T ss_pred CCCCCHHH
Confidence 99998853
No 84
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.41 E-value=1.4e-13 Score=116.92 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=75.0
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------------------CCCCCHHHHHh
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------------YHNLTEQELAR 96 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------------~~~~~~~~~~~ 96 (303)
...++..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+. +...+..+...
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 97 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLR 97 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHH
Confidence 33344449999999999999999999999999987652 3333332211 11222222211
Q ss_pred hcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+..+.....+.+.+.++.+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 167 (220)
T cd03263 98 FYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHH
Confidence 11000100100011223344444433221 223457888888887777888999999999999999654
No 85
>PRK06762 hypothetical protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=100.05 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=89.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+.+|+|+|++||||||+|+.|++.++ .++++++.|.+.+.+ .. .++.++....+.+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~~l-------~~--~~~~~~~~~~~~~~~~~~~-------- 63 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRRDM-------LR--VKDGPGNLSIDLIEQLVRY-------- 63 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHHHh-------cc--ccCCCCCcCHHHHHHHHHH--------
Confidence 67999999999999999999999985 367888877654221 01 1122333333333322221
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEecccccc--c---hhhhhhc---CeEEEEecChHHHHHHHHhhCccccCCCHH
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH--D---SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~--d---~~~~~~~---d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~ 199 (303)
.+.....+|+|+.+... . ..+.+.. ...||+++|.+++++|..+|.. .+....+
T Consensus 64 -----------------~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~ 125 (166)
T PRK06762 64 -----------------GLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGED 125 (166)
T ss_pred -----------------HHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHH
Confidence 12234567888875321 1 1122222 3789999999999999999863 2333445
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
.+..+|..+.. ...++.+|+++.. .++++++.|...+
T Consensus 126 ~l~~~~~~~~~----------~~~~~~~~~~~~~---~~~~v~~~i~~~~ 162 (166)
T PRK06762 126 DMRRWWNPHDT----------LGVIGETIFTDNL---SLKDIFDAILTDI 162 (166)
T ss_pred HHHHHHhhcCC----------cCCCCeEEecCCC---CHHHHHHHHHHHh
Confidence 55555655432 1235667765543 3444444444433
No 86
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.41 E-value=7.2e-14 Score=118.84 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=74.6
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC------------------------CC-CCCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ------------------------DS-FYHNLT 90 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~------------------------D~-~~~~~~ 90 (303)
.....+..+.++.+++|+|+||||||||++.|++.+++. |-+.++. +. ++...+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 99 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFT 99 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCc
Confidence 333444449999999999999999999999999987642 3233332 21 111122
Q ss_pred HHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...........+..-+.+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 175 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHH
Confidence 222211110000000000112233444444333222 22357888888887777888999999999999999654
No 87
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.41 E-value=5.9e-14 Score=126.37 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=86.5
Q ss_pred cccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---H
Q 022073 22 HMDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---A 95 (303)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~ 95 (303)
+++|++++|+.. ..+.+..++..+.++.++||.|+||||||||+++|++.+.+. |-+.++..+.. .++..+. .
T Consensus 3 ~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~-~~~~~~l~~~r 81 (343)
T TIGR02314 3 KLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT-TLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHHh
Confidence 344555555321 113445555559999999999999999999999999988753 44444443322 1222111 1
Q ss_pred hhcccCCCCCCc------------------cc----HHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcE
Q 022073 96 RVHEYNFDHPDA------------------FD----TEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 96 ~~~~~~f~~p~~------------------~d----~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
..-.+.|+++.- ++ .+...+.++.+..... .....+|.++.+|+..+++.+.++++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 111222222111 11 1223344554443322 23346888999998888888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|+|++.+|+..
T Consensus 162 LLlDEPts~LD~~t 175 (343)
T TIGR02314 162 LLCDEATSALDPAT 175 (343)
T ss_pred EEEeCCcccCCHHH
Confidence 99999999998753
No 88
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=4.9e-14 Score=117.45 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=95.2
Q ss_pred hhccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC
Q 022073 9 MIEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~ 85 (303)
+++++. ++.||+++. +|+|| + ..++.+++|+|||||||||+.+.|.+.+.|. +.+.+...+.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl-----~----------v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSL-----E----------VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecCCEEEEeceeE-----E----------EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence 455666 999999996 99999 9 9999999999999999999999999999875 4455555443
Q ss_pred CCCCCHHHHHhhcc-cCCCC-----------------------------CC-----cccHHHHHHHHHHhhCCCcccc--
Q 022073 86 YHNLTEQELARVHE-YNFDH-----------------------------PD-----AFDTEKLLSSMEKLRHGQAVDI-- 128 (303)
Q Consensus 86 ~~~~~~~~~~~~~~-~~f~~-----------------------------p~-----~~d~~~l~~~l~~l~~~~~v~~-- 128 (303)
- .+...++...+- -.|++ |. .--.+...+.|+.+........
T Consensus 69 t-~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 69 T-GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred C-CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence 2 233333322110 01221 11 1112333445555554443333
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..++++..+++.++.+.+.+++++++|+|.+++.+.
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~ 183 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHH
Confidence 346777777777888888999999999999998654
No 89
>PRK01184 hypothetical protein; Provisional
Probab=99.41 E-value=1.7e-12 Score=107.25 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=82.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCCCcc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQAV 126 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~~~v 126 (303)
+.+|+|+|++||||||+++ +++.+ ++.+++.++..+.. .... ...... .+. .........+ +..+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~~d~lr~~----~~~~---~~~~~~~~~g-~~~~~~~~~~--~~~~ 66 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREM---GIPVVVMGDVIREE----VKKR---GLEPTDENIG-KVAIDLRKEL--GMDA 66 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHc---CCcEEEhhHHHHHH----HHHc---CCCCCcHHHH-HHHHHHHHHH--ChHH
Confidence 3589999999999999998 55665 67888876654221 1110 111000 000 0000111110 0000
Q ss_pred ccCcccCCCCccCCCCceecCCCcEEEEeccccccch-hhhhhcC---eEEEEecChHHHHHHHHhhCccccCCCHHHHH
Q 022073 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS-RVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (303)
Q Consensus 127 ~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~-~~~~~~d---~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~ 202 (303)
+....+.. ....+...+|+||+....+. .+.+.++ .+|+|++|.+++.+|+..|+....+.+.+...
T Consensus 67 ----~~~~~~~~-----i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~ 137 (184)
T PRK01184 67 ----VAKRTVPK-----IREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELE 137 (184)
T ss_pred ----HHHHHHHH-----HHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHH
Confidence 00000000 00134578999997432222 3334445 89999999999999999886432222333333
Q ss_pred HHHhhccccchhhccccccccccEEecCCCCC
Q 022073 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
.+......+. ..+....||++|+|+++.
T Consensus 138 ~r~~~q~~~~----~~~~~~~ad~vI~N~~~~ 165 (184)
T PRK01184 138 ERDERELSWG----IGEVIALADYMIVNDSTL 165 (184)
T ss_pred HHHHHHhccC----HHHHHHhcCEEEeCCCCH
Confidence 3322211000 112246899999987643
No 90
>PRK08118 topology modulation protein; Reviewed
Probab=99.41 E-value=3.3e-12 Score=103.69 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~ 128 (303)
..|.|+|++||||||+|+.|++.+ ++.+++.|..+... .+. ....+...+.+..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD~l~~~~-----------~w~---~~~~~~~~~~~~~~~------- 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL---NIPVHHLDALFWKP-----------NWE---GVPKEEQITVQNELV------- 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCceecchhhccc-----------CCc---CCCHHHHHHHHHHHh-------
Confidence 468999999999999999999998 67788888765310 011 111222222232211
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
. .+-+|+||.+...-....+.+|.+|||++|.++++.|+++|..
T Consensus 58 ------------------~-~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 58 ------------------K-EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred ------------------c-CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 1 1237899977643344456799999999999999999999853
No 91
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=1.9e-13 Score=111.60 Aligned_cols=110 Identities=12% Similarity=0.182 Sum_probs=73.1
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME 118 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~ 118 (303)
..+..+.++.+++|.|+||||||||++.|++.+++. |-+.+...+.. ............+.++.+.-++. .+.+.+
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~~~~~~~~~~~~-t~~e~l- 96 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLDLESLRKNIAYVPQDPFLFSG-TIRENI- 96 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh-hcCHHHHHhhEEEEcCCchhccc-hHHHHh-
Confidence 333349999999999999999999999999998653 44555443221 12222222333445555432321 122211
Q ss_pred HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 119 ~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 ------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 97 ------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred ------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 7778888877777778899999999999999654
No 92
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=1.7e-13 Score=113.44 Aligned_cols=143 Identities=13% Similarity=0.199 Sum_probs=102.2
Q ss_pred hhccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q 022073 9 MIEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------- 75 (303)
|++.++ ++.|+.++. .++|| + .+++.++.|.|+||+||||+++.|++..++.
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl-----~----------v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSL-----E----------VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecccceeEEeeeee-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence 456666 889999886 99999 8 9999999999999999999999999988752
Q ss_pred -----------CEEEEeCC-CCCCCCCHHHHHhhcccCCCC--CCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCC
Q 022073 76 -----------RVVLVNQD-SFYHNLTEQELARVHEYNFDH--PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVF 141 (303)
Q Consensus 76 -----------~~~~l~~D-~~~~~~~~~~~~~~~~~~f~~--p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~ 141 (303)
++.++++. ..++.++.+++..++.+.... ...-+.+...+.+-.++.-.+..-..+|.++.|.+.+
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 45555543 455667777776666554432 1111133344433344433333445677788887777
Q ss_pred CceecCCCcEEEEeccccccchhhh
Q 022073 142 PARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 142 ~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
+++.+..++++++|+|..++-|.+.
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv 172 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIV 172 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHH
Confidence 7888999999999999999877643
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.40 E-value=1.8e-13 Score=115.85 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=71.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCC------------------------CCCCHHHHHhhc
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY------------------------HNLTEQELARVH 98 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~------------------------~~~~~~~~~~~~ 98 (303)
.+.++.+++|+|+||||||||++.|++.+++ .|-+.++..+.. ...+..+.....
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP 103 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHH
Confidence 3999999999999999999999999998764 233333332211 111111111111
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...+........+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~ 171 (214)
T TIGR02673 104 LEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171 (214)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHH
Confidence 0000000000112333444444333222 22357888888887777888999999999999999654
No 94
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-13 Score=126.37 Aligned_cols=173 Identities=14% Similarity=0.253 Sum_probs=115.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVL 79 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~~~ 79 (303)
+++++++++|++.. +.+.+.+.+++++..++|.|+|||||||+.+.|++.+.+. .+..
T Consensus 321 i~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 34569999998877 8999999999999999999999999999999999998752 3455
Q ss_pred EeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--------ccccC----cccCCCCccCCCCceecC
Q 022073 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--------AVDIP----NYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 80 l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--------~v~~p----~~~~~~~~~~~~~~~~~~ 147 (303)
++++.+...-+..++..+++ |+ -+.+.+.+.++.....+ +..+. ..|.++.+|+..+++...
T Consensus 400 v~Q~p~lf~gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 400 VSQNPYLFAGTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eCCCCccccccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 55555554444444443332 32 23344444444332221 22222 267778888877788889
Q ss_pred CCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEE
Q 022073 148 PSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADII 227 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~i 227 (303)
+++++++|||++.+ |+..+..+...+.+- .++++...+.|+... .+.+|.|
T Consensus 474 ~~~l~llDEpTA~L--------------D~etE~~i~~~l~~l--~~~ktvl~itHrl~~-------------~~~~D~I 524 (559)
T COG4988 474 PASLLLLDEPTAHL--------------DAETEQIILQALQEL--AKQKTVLVITHRLED-------------AADADRI 524 (559)
T ss_pred CCCEEEecCCccCC--------------CHhHHHHHHHHHHHH--HhCCeEEEEEcChHH-------------HhcCCEE
Confidence 99999999999998 444555555554442 234555555554433 4667866
Q ss_pred ec
Q 022073 228 IP 229 (303)
Q Consensus 228 I~ 229 (303)
+.
T Consensus 525 ~v 526 (559)
T COG4988 525 VV 526 (559)
T ss_pred EE
Confidence 53
No 95
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=6.5e-14 Score=126.59 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=83.8
Q ss_pred ccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---Hh
Q 022073 23 MDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---AR 96 (303)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~~ 96 (303)
++|++++|+.. ..+.+...+..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.. .....+. ..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~~ 82 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT-ALSEKELRKARR 82 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC-cCCHHHHHHHhc
Confidence 44555555311 123444455559999999999999999999999999998653 33444332211 1111111 11
Q ss_pred hcccCCCCCCc------------------cc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEE
Q 022073 97 VHEYNFDHPDA------------------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 97 ~~~~~f~~p~~------------------~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
...+.|+.+.- +. .+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++
T Consensus 83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iL 162 (343)
T PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11122221110 11 12333445554433222 23357888888888878888999999
Q ss_pred EEeccccccchhh
Q 022073 153 LLEGILVFHDSRV 165 (303)
Q Consensus 153 ildg~~~~~d~~~ 165 (303)
++|+|++++|+..
T Consensus 163 lLDEPts~LD~~~ 175 (343)
T PRK11153 163 LCDEATSALDPAT 175 (343)
T ss_pred EEeCCcccCCHHH
Confidence 9999999998753
No 96
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.40 E-value=1.6e-13 Score=117.28 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=73.2
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-------------------------CCCCHHHHHh
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-------------------------HNLTEQELAR 96 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-------------------------~~~~~~~~~~ 96 (303)
..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..... ...+..+...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~ 110 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVE 110 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHH
Confidence 339999999999999999999999999987643 33333322111 1112222111
Q ss_pred hcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+..+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~ 180 (228)
T PRK10584 111 LPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180 (228)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 110000000011122344455554433222 23357888888887777888999999999999999654
No 97
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.40 E-value=7.6e-14 Score=135.31 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=97.4
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEE
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVV 78 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~~ 78 (303)
.++++|++|+|++. .+....++..+++|..++|+|+||||||||++.|.+.++|. .+.
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 48899999999743 46899999999999999999999999999999999998763 345
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHH---------HHHHhhCCCcccc----CcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAVDI----PNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~---------~l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~ 145 (303)
++++|.+...-+..+...++ .|+ .+.+.+.+ .+..+..|-+..+ ..+|.++.+|...+++.
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~-----~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVG-----RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred EEecCcccccccHHHHHhcC-----CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 55555555444444443332 222 22333333 3333333322211 34788888888888888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
..+++++|+|+|++.+|+.
T Consensus 487 l~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 487 LKDPPILILDEATSALDVE 505 (588)
T ss_pred hcCCCEEEEeCCccCCCHH
Confidence 8999999999999998654
No 98
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=8.4e-14 Score=125.93 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=85.9
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV-------------- 78 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~-------------- 78 (303)
++.|++.. ++|+|| + +.++.+++|.|+||||||||++.|++...+. |.+
T Consensus 13 ~~~~~~~~~l~~isl-----~----------i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 13 TKRFGSNTVIDNLNL-----T----------IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEECCeEEEeeeEE-----E----------EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH
Confidence 45555444 466666 5 9999999999999999999999999988653 223
Q ss_pred ----EEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcE
Q 022073 79 ----LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 79 ----~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
++.++. +++.++..+...++...+..+..-..+.+.+.++.+..... -....+|.++.+|+..+++.+.++++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 333332 22333444333322111110111112233444444443321 22346788899998888888899999
Q ss_pred EEEeccccccchhhh
Q 022073 152 ILLEGILVFHDSRVR 166 (303)
Q Consensus 152 vildg~~~~~d~~~~ 166 (303)
+++|+|++.+|+..+
T Consensus 158 LLLDEP~s~LD~~~r 172 (351)
T PRK11432 158 LLFDEPLSNLDANLR 172 (351)
T ss_pred EEEcCCcccCCHHHH
Confidence 999999999988643
No 99
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.7e-13 Score=114.92 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=92.7
Q ss_pred cccccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---C-CCEEEEeCCCCCCCCCHHH
Q 022073 20 GFHMDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QRVVLVNQDSFYHNLTEQE 93 (303)
Q Consensus 20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~-~~~~~l~~D~~~~~~~~~~ 93 (303)
.++++|+||.|+.. ..+.....+..+.++.+++|+|+||||||||++.|++.+. + .|-+.++..+... .. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~-~~-~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE-FA-EK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc-ch-hh
Confidence 46789999999864 4467788888899999999999999999999999999986 2 3445554432211 11 11
Q ss_pred HHhhcccCCCCCCcccHHHHHHHHHHhh-CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 94 LARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d~~~l~~~l~~l~-~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
......+.++.+..+....+.+.+.... ....-....+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 1112223343332222212223222110 00112234578888888777778889999999999999996543
No 100
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=2.3e-13 Score=119.28 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=84.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-----------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ----------------- 82 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~----------------- 82 (303)
++++|++++|++...+....++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++.
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 87 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI 87 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEE
Confidence 3455666655432334555566669999999999999999999999999988652 3333332
Q ss_pred ---CC--CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEe
Q 022073 83 ---DS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLE 155 (303)
Q Consensus 83 ---D~--~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvild 155 (303)
+. ++...+..+...+...............+.+.++.+..... .....+|.++.+++..+.+.+.+++++++|
T Consensus 88 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (271)
T PRK13632 88 IFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167 (271)
T ss_pred EEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 21 12122222221111000000000011123344444433221 233467888888887778888999999999
Q ss_pred ccccccchh
Q 022073 156 GILVFHDSR 164 (303)
Q Consensus 156 g~~~~~d~~ 164 (303)
+|+.++|+.
T Consensus 168 EP~~gLD~~ 176 (271)
T PRK13632 168 ESTSMLDPK 176 (271)
T ss_pred CCcccCCHH
Confidence 999999765
No 101
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=1.1e-12 Score=109.60 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------CCCCCCCCHH
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------DSFYHNLTEQ 92 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------D~~~~~~~~~ 92 (303)
|+|+|| + +.+|..+||.|.||||||||++.|++.++|. |-+.+.. -.|-++++..
T Consensus 43 L~disf-----~----------i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGr 107 (249)
T COG1134 43 LKDISF-----E----------IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGR 107 (249)
T ss_pred ecCceE-----E----------EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchH
Confidence 588888 7 9999999999999999999999999999874 3333333 2455677777
Q ss_pred HHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC--cccCCCCccCCCCceecCCCcEEEEeccccccchhhhh
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p--~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~ 167 (303)
+...+.....+-....-.+.+.+.++--..|..+..| .||.++..|+..+.+...+++++|+|++++.-|+.+.+
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 7665544333211112222333333333344444444 68888888887777777899999999999988876544
No 102
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=9.7e-14 Score=119.17 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=73.0
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC------------------------CCCCHHHHHhh
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------------------------HNLTEQELARV 97 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~------------------------~~~~~~~~~~~ 97 (303)
..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+.. ...+..+....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 100 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence 339999999999999999999999999988653 33444332211 11122221111
Q ss_pred cccCCCC-CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 98 HEYNFDH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 98 ~~~~f~~-p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....+.. +.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 101 PLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 1000000 0000012233445544433222 22357888888888778888999999999999999654
No 103
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.39 E-value=7.1e-14 Score=127.33 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=79.6
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcc
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHE 99 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~ 99 (303)
.++..+.++.+++|.|+||||||||+++|++.+.+. | +.++.++. +++.++..+...++.
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l 111 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGL 111 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHH
Confidence 333449999999999999999999999999988752 2 23333332 233344444332221
Q ss_pred cCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 100 ~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
.....+..-....+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|+|++.+|...+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r 180 (375)
T PRK09452 112 RMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180 (375)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 101101100112334455544443322 2346788899998888888899999999999999998643
No 104
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=9.9e-14 Score=118.95 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=75.3
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH---HHhhcccCCCCCCc-----
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDA----- 107 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~---~~~~~~~~f~~p~~----- 107 (303)
.....+.++.++.+++|+|+||||||||++.|++.+++. |-+.++..+... ..... ......+.++.+..
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL-LSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc-CCHHHHHHHHhheEEEccCcccCCCCc
Confidence 344444449999999999999999999999999988653 334443322111 11110 01111111111111
Q ss_pred -------------cc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 -------------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 -------------~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++ .+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 11 12233444444332222 23357888888887777888999999999999999654
No 105
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=2.7e-13 Score=116.74 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=78.9
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHh
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELAR 96 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~ 96 (303)
....++.++.+|.+++|.|+||||||||++.|++.+++. | +.++.++. ++...+..+...
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 96 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVA 96 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHh
Confidence 344444449999999999999999999999999987642 2 23333332 222334443332
Q ss_pred hcccCCCC---CC-cccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 97 VHEYNFDH---PD-AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 97 ~~~~~f~~---p~-~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+....... +. ....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 97 FGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred hhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 21111100 00 00112334455555443222 234578888888877778889999999999999997653
No 106
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.39 E-value=1.8e-13 Score=135.24 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=100.8
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~ 76 (303)
+.++++|++|+|++. +.+.+...+..+++|..++|+|+|||||||+++.|.+.+++. .
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 348899999999864 357899999999999999999999999999999999998763 2
Q ss_pred EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCcccc----CcccCCCCccCCCCc
Q 022073 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPA 143 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~~----p~~~~~~~~~~~~~~ 143 (303)
+.++++|.+...-+..++..++. |+ .+.+.+.+.++ .+..|-+..+ ..+|.++.+|+..++
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGL-----TD-TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred ceEEecCccccccCHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 45566666665555555444332 21 23334444333 3333322211 347788888888888
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+...+++++|+|||++.+|++
T Consensus 631 ALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred HHhcCCCEEEEEccccccCHH
Confidence 888999999999999998653
No 107
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.39 E-value=8e-14 Score=126.22 Aligned_cols=136 Identities=16% Similarity=0.139 Sum_probs=86.9
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------- 76 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------- 76 (303)
++.|++.. ++|+|| + +..+.+++|.|+||||||||+++|++.+.+. |
T Consensus 11 ~~~~~~~~~l~~vs~-----~----------i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 11 RKRFGAFTALKDISL-----S----------VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEeCCeEEEEeeEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH
Confidence 45555544 466666 5 8999999999999999999999999988653 2
Q ss_pred --EEEEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcE
Q 022073 77 --VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 77 --~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
+.++.++. +++.++..+...++......+.........+.++.+..... -....+|.++.+|+..+++.+.++++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33333332 22334444433322111110111112334455555544332 23346788888888888888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|+|++.+|...
T Consensus 156 lLLDEP~s~LD~~~ 169 (353)
T TIGR03265 156 LLLDEPLSALDARV 169 (353)
T ss_pred EEEcCCcccCCHHH
Confidence 99999999998754
No 108
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.5e-13 Score=145.33 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=100.1
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
|.++|+|++|+|++...|.+.+++.++++|..|||+|++|||||||++.|.+.+.+. .+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 468999999999877668999999999999999999999999999999999988652 34
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++...+. .++.+.+.+.++... .|-+..+ ..+|.++.|++..+++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred EEECCCCccccccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 5556665554444444332211 234444554444322 2222111 2467778888788888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++|+||+++.+|.+
T Consensus 1389 LLr~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVR 1408 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHH
Confidence 88999999999999998653
No 109
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=3.1e-13 Score=118.88 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=83.1
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------- 85 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------- 85 (303)
+++|++++|.+...+.....+..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+.
T Consensus 7 ~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 7 RVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 445555555332223445555559999999999999999999999999998653 3333333221
Q ss_pred -------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEec
Q 022073 86 -------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (303)
Q Consensus 86 -------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg 156 (303)
+...+..+........+..+..-..+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11122222111110000000000012233344443332222 334678888888877788889999999999
Q ss_pred cccccchh
Q 022073 157 ILVFHDSR 164 (303)
Q Consensus 157 ~~~~~d~~ 164 (303)
|++++|+.
T Consensus 167 Pt~gLD~~ 174 (279)
T PRK13635 167 ATSMLDPR 174 (279)
T ss_pred CcccCCHH
Confidence 99999765
No 110
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=7.8e-14 Score=121.15 Aligned_cols=121 Identities=15% Similarity=0.015 Sum_probs=75.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE---------------EEeCCC-CCCCCCHHHHHhhcccCCCCCCc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV---------------LVNQDS-FYHNLTEQELARVHEYNFDHPDA 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~---------------~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~ 107 (303)
+.+|.+++|+|+||||||||++.|++.+.+. |-+ ++.++. ++...+..+...........+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 9999999999999999999999999987642 322 233332 22223443332221111110111
Q ss_pred ccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 108 FDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 108 ~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
...+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 104 QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred HHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 1123344555555443222 233578888888877778889999999999999997653
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.38 E-value=2.1e-13 Score=117.70 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=75.2
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC------------------------CCCCCHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------------------------YHNLTEQ 92 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------------------------~~~~~~~ 92 (303)
....+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVL 97 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHH
Confidence 33333349999999999999999999999999988642 3344433221 1112222
Q ss_pred HHHhhcccCC--------CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 93 ELARVHEYNF--------DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 93 ~~~~~~~~~f--------~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+......... ......+.+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 98 ENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred HHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 2111110000 000001122334445544332222 234578888888888888889999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 178 ~~ 179 (243)
T TIGR02315 178 PK 179 (243)
T ss_pred HH
Confidence 54
No 112
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.38 E-value=2.7e-13 Score=120.78 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=74.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE-------------------EEeCCC-CCCCCCHHHHHhhcccCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV-------------------LVNQDS-FYHNLTEQELARVHEYNFD 103 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~-------------------~l~~D~-~~~~~~~~~~~~~~~~~f~ 103 (303)
+.+|.+++|.|+||||||||++.|++.+.+. |-+ ++.++. ++...+..+........+.
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 9999999999999999999999999987642 222 333332 2223333333221110011
Q ss_pred CCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.+..-..+.+.+.++.+.... ......+|.++.+|+..+.+.+.+++++++|+|++++|+..
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 000000122333444443322 22334688888888877788889999999999999998754
No 113
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.38 E-value=1.1e-13 Score=133.53 Aligned_cols=166 Identities=14% Similarity=0.236 Sum_probs=107.4
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEE-----------------
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV----------------- 80 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l----------------- 80 (303)
+.+.++|++|+|++ ..+.....+..+++|..+||+|++||||||+++.|.+.+.+ .|-..+
T Consensus 327 ~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 45889999999976 34688889999999999999999999999999999999986 333444
Q ss_pred ---eCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHH---------HHHhhCCCcccc----CcccCCCCccCCCCce
Q 022073 81 ---NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 81 ---~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~---------l~~l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
++|.+...-+..++..+ ..|+ ...+.+.+. +..+..|-+..+ ..+|.++.||...+++
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~-----g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIAL-----GRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred cEEcccceeecccHHHHHhc-----CCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 33433333333333222 2233 222333333 333322222222 2467788888888888
Q ss_pred ecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
.+.+++++|+|++++.+| ...+....+.+.+- .++++.-.+.|+...
T Consensus 480 ll~~~~ILILDEaTSalD--------------~~tE~~I~~~l~~l--~~~rT~iiIaHRlst 526 (567)
T COG1132 480 LLRNPPILILDEATSALD--------------TETEALIQDALKKL--LKGRTTLIIAHRLST 526 (567)
T ss_pred HhcCCCEEEEeccccccC--------------HHhHHHHHHHHHHH--hcCCEEEEEeccHhH
Confidence 889999999999999984 44444555555431 233444445666543
No 114
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=2.7e-13 Score=114.44 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------------EEEEeCCC-CCCCCCHHHHHhhcccCCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R----------------VVLVNQDS-FYHNLTEQELARVHEYNFDHP 105 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~----------------~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p 105 (303)
++.+|.+++|+|+||||||||++.|++.+++. | +.++.++. ++...+..+........+..+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK 101 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC
Confidence 39999999999999999999999999987542 2 23333332 222334433322211111111
Q ss_pred CcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 106 DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 106 ~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~ 162 (210)
T cd03269 102 KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162 (210)
T ss_pred hHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 111123344555555433222 23457888888877777788999999999999999654
No 115
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.38 E-value=9.7e-14 Score=134.70 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=97.1
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++|+|++. .+.+.+.+..+++|..|+|+|+||||||||++.|.+.+.|. | +
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 358899999999743 46899999999999999999999999999999999998763 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+..+-+..++..+++ ..+.+.+.+.++. +..|-+..+ ..+|.++.+|...+++
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEEccCCccccchHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 4455555444444444433322 1233444444333 322222211 2467788888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|||++.+|+.
T Consensus 491 Ll~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 491 LVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHhCCCEEEEeCCcccCCHH
Confidence 88999999999999998654
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.38 E-value=3e-13 Score=114.44 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=72.7
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH---HHhhcccCCCCCCc--------
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDA-------- 107 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~---~~~~~~~~f~~p~~-------- 107 (303)
..+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ...... ......+.++.+..
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~ 97 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS-DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYE 97 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc-cCCHHHHHHHHHheEEEecCchhccCCcHHH
Confidence 333339999999999999999999999999987653 33333332111 111100 11111111111110
Q ss_pred ----------cc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ----------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ----------~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+. .+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 170 (214)
T cd03292 98 NVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170 (214)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 11 11233344443322211 22357888888887777888999999999999999654
No 117
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=7.1e-13 Score=108.22 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=84.6
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC-CCCCHHHHHhhcccCCCCCCcccHH--
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTE-- 111 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~-~~~~~~~~~~~~~~~f~~p~~~d~~-- 111 (303)
++..+.+..+.++.|||||||||+++.|.+.... .|-+.++..+.| +.....++....+..|+.|.-|...
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy 105 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY 105 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence 3333999999999999999999999999886542 244666666666 3455666666666778877654422
Q ss_pred ---------------H----HHHHHHHhhCCCcc----cc--CcccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 112 ---------------K----LLSSMEKLRHGQAV----DI--PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 112 ---------------~----l~~~l~~l~~~~~v----~~--p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
. ....|+....+..+ .- -.+|.++.+|+.++++..-.++++++|+|+..+||
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 1 11222222222222 11 23678888888888888889999999999999987
No 118
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.37 E-value=3.5e-13 Score=119.98 Aligned_cols=133 Identities=22% Similarity=0.261 Sum_probs=83.4
Q ss_pred cccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-----------
Q 022073 18 FSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS----------- 84 (303)
Q Consensus 18 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~----------- 84 (303)
|++. -++|+|| + +.+|.++||.|+||||||||+++|++.+.+. |-+.+...+
T Consensus 3 y~~~~~l~~vs~-----~----------i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 67 (302)
T TIGR01188 3 YGDFKAVDGVNF-----K----------VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRS 67 (302)
T ss_pred eCCeeEEeeeeE-----E----------EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhh
Confidence 4443 3688888 7 9999999999999999999999999988653 333333322
Q ss_pred ---------CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEE
Q 022073 85 ---------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 85 ---------~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
++..++..+...+....+..+.....+...+.++.+..... .....+|.++.+|+..+.+.+.++++++
T Consensus 68 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred cEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12222322222111100110000011233445555544322 2334688888888888888889999999
Q ss_pred Eeccccccchhh
Q 022073 154 LEGILVFHDSRV 165 (303)
Q Consensus 154 ldg~~~~~d~~~ 165 (303)
+|+|++++|+..
T Consensus 148 LDEPt~gLD~~~ 159 (302)
T TIGR01188 148 LDEPTTGLDPRT 159 (302)
T ss_pred EeCCCcCCCHHH
Confidence 999999998753
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=3.2e-13 Score=114.80 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------------------CCCCCHHHHHhhcccCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------------YHNLTEQELARVHEYNF 102 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------------~~~~~~~~~~~~~~~~f 102 (303)
++.++.+++|+|+||||||||++.|++.+++. |-+.++.... +..++..+........+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc
Confidence 39999999999999999999999999987653 3333333221 11122222111110000
Q ss_pred CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 103 DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 103 ~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~ 165 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence 000000112334445554433222 23457888888887778888999999999999999654
No 120
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.37 E-value=3.1e-13 Score=114.69 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=75.7
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-------------------CC-CCCCCCHHHHH
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-------------------DS-FYHNLTEQELA 95 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~-------------------D~-~~~~~~~~~~~ 95 (303)
.....+..+.++.+++|.|+||||||||++.|++.+++. |-+.++. +. ++...+..+..
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 344444449999999999999999999999999987642 3333322 21 11112222222
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+....+..+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 170 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVM 170 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHH
Confidence 1110000000000112333444544332211 23357888888887777888999999999999999654
No 121
>PLN03232 ABC transporter C family member; Provisional
Probab=99.37 E-value=1.7e-13 Score=144.49 Aligned_cols=165 Identities=13% Similarity=0.227 Sum_probs=112.3
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|++...+.+.+.+..+++|..|||+|++|||||||++.|.+.+.+. .+
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 458999999999877678999999999999999999999999999999999988753 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++.... +.++.+.+.+.++... .|-+..+ ..+|.++.|++..+++
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~-------~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPF-------SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCC-------CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 455555555444444433221 1244455555544322 2211111 2467788888778888
Q ss_pred ecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHh
Q 022073 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
.+.+++++|+||+++.+|. ..+..+++.+++. ..+++.-.+.|+..
T Consensus 1386 LLr~~~ILILDEATSaLD~--------------~Te~~Iq~~L~~~--~~~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDV--------------RTDSLIQRTIREE--FKSCTMLVIAHRLN 1431 (1495)
T ss_pred HHhCCCEEEEECCcccCCH--------------HHHHHHHHHHHHH--cCCCEEEEEeCCHH
Confidence 8899999999999999854 3444555555442 23455555555553
No 122
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.37 E-value=7.1e-13 Score=111.40 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=75.6
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE-----------------EEeCCC--CCCCCCHHHHHhhcccC
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV-----------------LVNQDS--FYHNLTEQELARVHEYN 101 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~-----------------~l~~D~--~~~~~~~~~~~~~~~~~ 101 (303)
+..+.++.+++|.|+||||||||++.|++.+++. |-+ ++.++. ++...+..+........
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 99 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE 99 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhh
Confidence 3339999999999999999999999999987642 222 333332 11112222222111100
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
. ..+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 100 ~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 161 (205)
T cd03226 100 L----DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161 (205)
T ss_pred c----CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 0 11223455666665544322 223578888888877777888999999999999996653
No 123
>PRK06217 hypothetical protein; Validated
Probab=99.37 E-value=8.5e-12 Score=102.96 Aligned_cols=105 Identities=22% Similarity=0.364 Sum_probs=71.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~ 128 (303)
+.|.|+|.+||||||+++.|++.+ ++.+++.|.+++... ...+.... -+.......+..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l---~~~~~~~D~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~-------- 61 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL---DIPHLDTDDYFWLPT--------DPPFTTKR-PPEERLRLLLEDL-------- 61 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---CCcEEEcCceeeccC--------CCCccccC-CHHHHHHHHHHHH--------
Confidence 569999999999999999999998 678999999884211 00011111 1111111111111
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
...+-+|+||.+..+...+...+|.+|||++|.+++++|+.+|..
T Consensus 62 ------------------~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 62 ------------------RPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred ------------------hcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 112346888877655455677899999999999999999999864
No 124
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.37 E-value=1.6e-13 Score=125.86 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=83.4
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEeCCC-CCCCCCHHHHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDS-FYHNLTEQELA 95 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~~~l~~D~-~~~~~~~~~~~ 95 (303)
+...+..+.+|.+++|.|+||||||||++.|++.+++. | +.++.++. ++..++..+..
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v 98 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV 98 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence 33344449999999999999999999999999988652 2 22333332 22334444444
Q ss_pred hhcccC----CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~----f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.++.+. +..+...+.+.+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|+|++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 333221 1111122344555666665554322 34468888888888888888999999999999999664
No 125
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.37 E-value=2e-12 Score=108.34 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=99.9
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHH
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQ 92 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~ 92 (303)
++.|++... +|+|| + +..+.++.+.|+|||||||++++|.+.+.+. |-+.++..+.. +....
T Consensus 8 sk~y~~~~av~~v~l-----~----------I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~-~~d~~ 71 (309)
T COG1125 8 SKRYGNKKAVDDVNL-----T----------IEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS-DLDPV 71 (309)
T ss_pred ehhcCCceeeeeeeE-----E----------ecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc-cCCHH
Confidence 455555443 66666 5 9999999999999999999999999998763 44555554432 23333
Q ss_pred HHHhhcccC------CCC----------C--CcccHHHHHHHHHH----hhCCCc---cccC-cccCCCCccCCCCceec
Q 022073 93 ELARVHEYN------FDH----------P--DAFDTEKLLSSMEK----LRHGQA---VDIP-NYDFKSYKNNVFPARRV 146 (303)
Q Consensus 93 ~~~~~~~~~------f~~----------p--~~~d~~~l~~~l~~----l~~~~~---v~~p-~~~~~~~~~~~~~~~~~ 146 (303)
++...-+|. |.| | ..|+.+...+...+ +..... -.+| .+|.++.+|+..+++.+
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 332222221 222 1 13666655544433 333221 1234 57999999988888888
Q ss_pred CCCcEEEEeccccccchhhhhh------------cCeEEEEecChHHHHH
Q 022073 147 NPSDVILLEGILVFHDSRVREL------------MNMKIFVDTDADVRLA 184 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~~~~------------~d~~I~v~~~~~~~~~ 184 (303)
.+++++++|+|+..+||-.+.. ..-+|||+=|-+..+.
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9999999999999999854432 2357888777666543
No 126
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.3e-13 Score=124.98 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=78.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcccCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHEYNFDH 104 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~~~f~~ 104 (303)
+.++.+++|.|+||||||||+++|++.+.+. | +.++.++. +++.++..+...++......
T Consensus 27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 27 VADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 9999999999999999999999999987653 2 33333332 22334444433322111110
Q ss_pred CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 105 PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 105 p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
+.......+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|+|++.+|+..+
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r 170 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR 170 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1111112344555554443322 2346888999998888888899999999999999987543
No 127
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.4e-13 Score=121.69 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=86.6
Q ss_pred ccccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC---CCCHHH
Q 022073 21 FHMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH---NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~---~~~~~~ 93 (303)
+++++++++|++.+ .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+... ......
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 34566666664322 24566666669999999999999999999999999987653 333333321110 000111
Q ss_pred HHhhcccCCCCCC-------------------ccc----HHHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecC
Q 022073 94 LARVHEYNFDHPD-------------------AFD----TEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 94 ~~~~~~~~f~~p~-------------------~~d----~~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~ 147 (303)
......+.|+.|. ..+ .+...+.++.+..... .....+|.++.+++..+.+.+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1111122222211 011 1223344555444311 2234578888888877788889
Q ss_pred CCcEEEEeccccccchhh
Q 022073 148 PSDVILLEGILVFHDSRV 165 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~~ 165 (303)
+++++++|+|++++|+..
T Consensus 163 ~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred CCCEEEEECCcccCCHHH
Confidence 999999999999997653
No 128
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.37 E-value=1.1e-13 Score=121.12 Aligned_cols=144 Identities=12% Similarity=0.168 Sum_probs=83.3
Q ss_pred hhhhhccCC-Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeC
Q 022073 6 VVDMIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (303)
Q Consensus 6 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~ 82 (303)
++.+++.++ ++.|++. -++|+|| + +.+|.+++|+|+||||||||++.|++.+.+ .|-+.++.
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vsl-----~----------i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 68 (269)
T PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISL-----T----------VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 68 (269)
T ss_pred ccceEEEeCeEEEECCEEEEeeeEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 344455444 5555442 2466666 6 999999999999999999999999998864 23333332
Q ss_pred CCC------------------------CCCCCHHHHHhhcccCCCC-CCcccHHHHHHHHHHhhCCCc--cccCcccCCC
Q 022073 83 DSF------------------------YHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKS 135 (303)
Q Consensus 83 D~~------------------------~~~~~~~~~~~~~~~~f~~-p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~ 135 (303)
.+. +...+..+...+....+.. +.....+...+.+..+..... .....+|.++
T Consensus 69 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 148 (269)
T PRK11831 69 ENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM 148 (269)
T ss_pred EEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence 211 1111222211111000000 000001122333444433221 1234578888
Q ss_pred CccCCCCceecCCCcEEEEeccccccchh
Q 022073 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 136 ~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+++..+.+.+.+++++++|+|++++|+.
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~ 177 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPI 177 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 88887777888999999999999999764
No 129
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.36 E-value=1.4e-12 Score=110.18 Aligned_cols=187 Identities=18% Similarity=0.278 Sum_probs=102.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHH---------------hhcccCCCCCC-----c
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELA---------------RVHEYNFDHPD-----A 107 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~---------------~~~~~~f~~p~-----~ 107 (303)
+++|+|+|++||||||+++.|++.+ ++.+++.+.+|+..+..-.. ......|...+ .
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~---~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL---GYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 3689999999999999999999998 67788888877543211110 00001110000 0
Q ss_pred ccHHHHHHHHHHhhC----CCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHH
Q 022073 108 FDTEKLLSSMEKLRH----GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRL 183 (303)
Q Consensus 108 ~d~~~l~~~l~~l~~----~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~ 183 (303)
++...+...+..-.. ..-..+|.+.....+.+ .. ....+-+|+||-..+. . +.+..+++||+++|.+.+.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q---r~-~a~~~~~Vi~Gr~~~~-~-v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ---QA-LAKNDGIIADGRDIGT-V-VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH---HH-HhhcCCEEEEEcCcce-E-EeCCCCEEEEEECCHHHHH
Confidence 111111111100000 00011222222222211 11 1222358999987552 1 4444789999999999999
Q ss_pred HHHHhhCccc-cCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCCHHHHHHHHHHHH
Q 022073 184 ARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 184 ~R~~~R~~~~-~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~v~~i~ 246 (303)
+|+..|.... ...+.+.....+..+..-+..+...|.....| ++|+++.. .++++++.|.
T Consensus 153 ~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l---~ieevv~~I~ 214 (217)
T TIGR00017 153 KRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNL---SIDEVVEKIL 214 (217)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCC---CHHHHHHHHH
Confidence 9998886332 23455677777766654455555667555545 55666543 4556666554
No 130
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.36 E-value=2e-13 Score=143.03 Aligned_cols=169 Identities=14% Similarity=0.185 Sum_probs=112.5
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----------------------
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------------- 74 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----------------------- 74 (303)
+.+.|+||+|+|++. ..|.+...+..+++|..++|+|+|||||||++++|.+.+.+
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 358899999999864 34789999999999999999999999999999999999886
Q ss_pred --------------------------------CCEE--------------------EEeCCCCCCCCCHHHHHhhcccCC
Q 022073 75 --------------------------------QRVV--------------------LVNQDSFYHNLTEQELARVHEYNF 102 (303)
Q Consensus 75 --------------------------------~~~~--------------------~l~~D~~~~~~~~~~~~~~~~~~f 102 (303)
.|-+ +++++.+...-+..+...++
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g---- 1319 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG---- 1319 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC----
Confidence 2333 33444444344444443333
Q ss_pred CCCCcccHHHHHHH---------HHHhhCCCcccc----CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc
Q 022073 103 DHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM 169 (303)
Q Consensus 103 ~~p~~~d~~~l~~~---------l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~ 169 (303)
.|+ ...+.+.+. +..+..|-...+ ..+|.++.||+.++++.+.+++++|+||+++.+|.
T Consensus 1320 -~~~-at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~------ 1391 (1466)
T PTZ00265 1320 -KED-ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS------ 1391 (1466)
T ss_pred -CCC-CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH------
Confidence 232 233333333 333333322222 24788888998888889999999999999999854
Q ss_pred CeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 170 NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 170 d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
..+..+...+.+.....+++...+.|+...
T Consensus 1392 --------~sE~~I~~~L~~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265 1392 --------NSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred --------HHHHHHHHHHHHHhccCCCEEEEEechHHH
Confidence 344444444443211235666667776644
No 131
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.36 E-value=1.7e-12 Score=103.40 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=89.2
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCC-------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH------------- 87 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~------------- 87 (303)
.++++.++|.+.. -.-+..+..+.+++|.|+||||||||.+++++...| .|.+.+...+...
T Consensus 3 ~L~~V~~~y~~~~----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 3 ALDDVRFSYGHLP----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred cccceEEeeCcce----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 3456666554331 112333788999999999999999999999998765 3455555544321
Q ss_pred ------CCCHHHHHhhcccCCCCC----CcccHHHHHHHHHHhhCCCcc-cc-CcccCCCCccCCCCceecCCCcEEEEe
Q 022073 88 ------NLTEQELARVHEYNFDHP----DAFDTEKLLSSMEKLRHGQAV-DI-PNYDFKSYKNNVFPARRVNPSDVILLE 155 (303)
Q Consensus 88 ------~~~~~~~~~~~~~~f~~p----~~~d~~~l~~~l~~l~~~~~v-~~-p~~~~~~~~~~~~~~~~~~~~~vvild 155 (303)
.++..+...++. +| .+.+.+.+...+.+....... .+ +.+|.++.+|+..++..+.+.+++++|
T Consensus 79 EnNLFaHLtV~qNigLGl----~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGL----SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred ccccchhhhhhhhhcccC----CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 111111111110 12 234455566666665544322 23 468999999988888888999999999
Q ss_pred ccccccchhhhh
Q 022073 156 GILVFHDSRVRE 167 (303)
Q Consensus 156 g~~~~~d~~~~~ 167 (303)
+|++.+||.++.
T Consensus 155 EPFsALdP~LR~ 166 (231)
T COG3840 155 EPFSALDPALRA 166 (231)
T ss_pred CchhhcCHHHHH
Confidence 999999998764
No 132
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=5.4e-13 Score=116.87 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=83.4
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
+++++++++|++...+....++..+.++.+++|.|+||||||||++.|++.+.+ .|-+.++..+.- ............
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~-~~~~~~~~~~i~ 86 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT-DDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHhhee
Confidence 344555555533222344445555999999999999999999999999998865 233444332211 111111111111
Q ss_pred cCCCCCC-------------------ccc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 100 YNFDHPD-------------------AFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 100 ~~f~~p~-------------------~~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+.++.|. ... .+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL 166 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111110 011 12233444444432212 2345788888888777888899999999
Q ss_pred eccccccchhh
Q 022073 155 EGILVFHDSRV 165 (303)
Q Consensus 155 dg~~~~~d~~~ 165 (303)
|+|++++|+..
T Consensus 167 DEPt~~LD~~~ 177 (269)
T PRK13648 167 DEATSMLDPDA 177 (269)
T ss_pred eCCcccCCHHH
Confidence 99999996653
No 133
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.36 E-value=6e-13 Score=118.52 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=101.8
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------- 85 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------- 85 (303)
.+.|+++.. +|+|+ + +.+|.++.+.|||||||||++++|++...|. |-+.++..+.
T Consensus 12 ~k~yg~~~av~~isl-----~----------i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k 76 (352)
T COG3842 12 SKSFGDFTAVDDISL-----D----------IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK 76 (352)
T ss_pred eeecCCeeEEeccee-----e----------ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh
Confidence 677876554 88888 7 9999999999999999999999999987653 2233333222
Q ss_pred ------------CCCCCHHHHHhhcccC-CCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCc
Q 022073 86 ------------YHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~-f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
++.++..++..++-.. ...+.+-..++..+.|+.+..... -.....|.++.+|+..+++.+..++
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence 2334444443332210 000111122345555555544432 2334689999999988888889999
Q ss_pred EEEEeccccccchhhhhhcC------------eEEEEecChHHHHH
Q 022073 151 VILLEGILVFHDSRVRELMN------------MKIFVDTDADVRLA 184 (303)
Q Consensus 151 vvildg~~~~~d~~~~~~~d------------~~I~v~~~~~~~~~ 184 (303)
++++|+|+..+|..++..+- -.|||+=|.+..+.
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ 202 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA 202 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh
Confidence 99999999999987765431 35677766666543
No 134
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.36 E-value=2.2e-13 Score=130.94 Aligned_cols=145 Identities=11% Similarity=0.183 Sum_probs=99.3
Q ss_pred cccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHh
Q 022073 18 FSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR 96 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~ 96 (303)
.+.++++|++|+|++. .+.....+..+++|..++|.|+||||||||++.|++.+.+. |.+.++.-+. ..........
T Consensus 320 ~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~~~ 397 (547)
T PRK10522 320 WQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV-TAEQPEDYRK 397 (547)
T ss_pred CceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC-CCCCHHHHhh
Confidence 3568899999999743 46889999999999999999999999999999999988653 4455544322 2223323222
Q ss_pred hcccCCCCC-----------CcccHHHHHHHHHHhhCCCcccc-------CcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 97 VHEYNFDHP-----------DAFDTEKLLSSMEKLRHGQAVDI-------PNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 97 ~~~~~f~~p-----------~~~d~~~l~~~l~~l~~~~~v~~-------p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
.-.+.+++| ...+.+.+.+.++.+..+..+.. ..+|.++.+|...+++.+.+++++|+|+|+
T Consensus 398 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred heEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 212221111 12334455666666654433322 257778888877778888999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+.+|+.
T Consensus 478 s~LD~~ 483 (547)
T PRK10522 478 ADQDPH 483 (547)
T ss_pred CCCCHH
Confidence 998654
No 135
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.2e-13 Score=120.30 Aligned_cols=144 Identities=10% Similarity=0.129 Sum_probs=84.5
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC-CCHHHHHh
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN-LTEQELAR 96 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~-~~~~~~~~ 96 (303)
++++++++|+... .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.... ........
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13637 4 KIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83 (287)
T ss_pred EEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhh
Confidence 3455555553321 13455555559999999999999999999999999988653 3344433222110 00011111
Q ss_pred hcccCCCCCC-------------------cccH----HHHHHHHHHhhCC--C--ccccCcccCCCCccCCCCceecCCC
Q 022073 97 VHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHG--Q--AVDIPNYDFKSYKNNVFPARRVNPS 149 (303)
Q Consensus 97 ~~~~~f~~p~-------------------~~d~----~~l~~~l~~l~~~--~--~v~~p~~~~~~~~~~~~~~~~~~~~ 149 (303)
...+.|+.|. .++. +...+.++.+... . .-....+|.++.+|+..+.+.+.++
T Consensus 84 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P 163 (287)
T PRK13637 84 KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP 163 (287)
T ss_pred ceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1122222221 0111 1233444444432 1 1223457888888888888888999
Q ss_pred cEEEEeccccccchhh
Q 022073 150 DVILLEGILVFHDSRV 165 (303)
Q Consensus 150 ~vvildg~~~~~d~~~ 165 (303)
+++++|+|+.++|+..
T Consensus 164 ~llllDEPt~gLD~~~ 179 (287)
T PRK13637 164 KILILDEPTAGLDPKG 179 (287)
T ss_pred CEEEEECCccCCCHHH
Confidence 9999999999997653
No 136
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.36 E-value=6e-13 Score=116.54 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=91.8
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
.++++|++++|++...+.+..++..+.+|.+++|.|++|||||||++.|.+.+...|-+.++..+.. ......+.....
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~-~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWN-SVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhh-hCCHHHHhhhEE
Confidence 4667788887765555677778888999999999999999999999999999875555555443221 111111111111
Q ss_pred cCCCCCC--------------cccHHHHHHHHHHhhCCCcc-ccC------------cccCCCCccCCCCceecCCCcEE
Q 022073 100 YNFDHPD--------------AFDTEKLLSSMEKLRHGQAV-DIP------------NYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 100 ~~f~~p~--------------~~d~~~l~~~l~~l~~~~~v-~~p------------~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+.++.|. .+..+.+.+.++.+.....+ ..| .+|.++.+++..+++.+.+++++
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 1122111 12334444445443322211 112 27777778877777888999999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
++|+|++.+|+.
T Consensus 161 llDEpts~LD~~ 172 (275)
T cd03289 161 LLDEPSAHLDPI 172 (275)
T ss_pred EEECccccCCHH
Confidence 999999999654
No 137
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=1.9e-13 Score=112.29 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC--HHHHHhhcccCCCCCCcccHHHHHHHHHH
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT--EQELARVHEYNFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~--~~~~~~~~~~~f~~p~~~d~~~l~~~l~~ 119 (303)
..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ... .........+.++.|..+....+.+.+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT-DLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 339999999999999999999999999988753 44555543321 111 12222233344444432221112121111
Q ss_pred hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 120 l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. +|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 ---------~-lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~ 134 (178)
T cd03229 100 ---------G-LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134 (178)
T ss_pred ---------c-CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 1 7888888887778888999999999999999654
No 138
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.36 E-value=2.9e-13 Score=115.64 Aligned_cols=128 Identities=11% Similarity=0.056 Sum_probs=74.0
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe-----------------------CCC---CCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN-----------------------QDS---FYHNL 89 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~-----------------------~D~---~~~~~ 89 (303)
....++..+.+|.+++|.|+||||||||++.|++.+++. |-+.+. ++. ++...
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 99 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM 99 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcC
Confidence 344444449999999999999999999999999987642 323332 222 11122
Q ss_pred CHHHHHhhcccCCCCCCc-ccHHHH-HHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 90 TEQELARVHEYNFDHPDA-FDTEKL-LSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 90 ~~~~~~~~~~~~f~~p~~-~d~~~l-~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+..+........+..... ...... .+.+..+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 179 (228)
T cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179 (228)
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 222221111000100000 000111 23444443321 1123457888888887777888999999999999998654
No 139
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.1e-12 Score=112.72 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=98.8
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC------
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------ 86 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~------ 86 (303)
.++|+.+.. +|+++ + ++.+.++++.|||||||||+++.|++...|. |.+++....++
T Consensus 9 ~~~~~~~~a~~di~l-----~----------i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 9 KKRFGAFGALDDISL-----D----------IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred hhhccccccccccee-----e----------ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc
Confidence 788888875 78999 8 8999999999999999999999999998764 33444443111
Q ss_pred ----------------CCCCHHHHHhhcccC-CCCCC-cccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceec
Q 022073 87 ----------------HNLTEQELARVHEYN-FDHPD-AFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 87 ----------------~~~~~~~~~~~~~~~-f~~p~-~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~ 146 (303)
+.++..+...++-.. ...|. .-...+..+.|....... ......+|.++.+|+..+++..
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 112222222211100 01121 122233444455444432 2233468999999988878888
Q ss_pred CCCcEEEEeccccccchhhhhhc-----------C-eEEEEecChHHHH
Q 022073 147 NPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVRL 183 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~~~~~-----------d-~~I~v~~~~~~~~ 183 (303)
..++++++|+|+..+|..+++.+ . ..|||.=|.+..+
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~ 202 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHH
Confidence 89999999999999988765432 1 3566666655543
No 140
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.36 E-value=4.6e-13 Score=129.26 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=95.4
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EE
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VV 78 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~~ 78 (303)
.+++++++|+|+....+.....+..+++|..++|.|+||||||||++.|.+.++|. | +.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 47899999999876667899999999999999999999999999999999998753 2 23
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCccc----cCcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVD----IPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~v~----~p~~~~~~~~~~~~~~~~ 145 (303)
+++++.+...-+..+...++ .|+ ...+.+.+.++. +..|-... -..+|.++.+|...+++.
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~-----~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALG-----RPD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred EEccCCeeccccHHHHHhcC-----CCC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 44444443333333333222 122 233333333332 22221111 124677888887777888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++.+|+.
T Consensus 467 l~~~~illlDEpts~LD~~ 485 (569)
T PRK10789 467 LLNAEILILDDALSAVDGR 485 (569)
T ss_pred hcCCCEEEEECccccCCHH
Confidence 8999999999999999654
No 141
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.36 E-value=4.7e-13 Score=113.17 Aligned_cols=123 Identities=15% Similarity=0.049 Sum_probs=73.8
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------------EEeCCCCC-CCCCHHHHHhhcccC
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------------LVNQDSFY-HNLTEQELARVHEYN 101 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~------------------~l~~D~~~-~~~~~~~~~~~~~~~ 101 (303)
+..+.++.+++|.|+||||||||++.|++.+++. |-+ ++.++... ...+..+........
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence 3339999999999999999999999999987642 222 33333211 223333322221100
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......-..+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 164 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1000000112233444544332222 23457888888887777788999999999999999664
No 142
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.36 E-value=4.6e-13 Score=113.91 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=72.5
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC----------------------CCCCCHHHHHh
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF----------------------YHNLTEQELAR 96 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~----------------------~~~~~~~~~~~ 96 (303)
.++..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+. +...+..+...
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 97 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLL 97 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHH
Confidence 333349999999999999999999999999987642 3333333211 11122222111
Q ss_pred hcccCCCCCCcccHHHHHHHHHHhh-CCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~~f~~p~~~d~~~l~~~l~~l~-~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....... .......+.+.++.+. ... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 ~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 166 (222)
T cd03224 98 LGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166 (222)
T ss_pred HHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 1110000 0001112233333331 111 2233457888888887777888999999999999999654
No 143
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=4.6e-13 Score=117.84 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 22 HMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
+++|++++|++.. .+.+...+..+.+|.+++|+|+||||||||++.|++.+.+. |-+.++..+.. ..+.........
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~~~~~~~~i~ 84 (279)
T PRK13650 6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT-EENVWDIRHKIG 84 (279)
T ss_pred EEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECC-cCcHHHHHhhce
Confidence 4455555553221 23444555559999999999999999999999999988653 33444332221 111111111111
Q ss_pred cCCCCCC-------------------ccc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 100 YNFDHPD-------------------AFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 100 ~~f~~p~-------------------~~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+.|+.|. ..+ .+...+.++.+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlL 164 (279)
T PRK13650 85 MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIIL 164 (279)
T ss_pred EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1122110 011 12234445544433222 2346777888888777888899999999
Q ss_pred eccccccchh
Q 022073 155 EGILVFHDSR 164 (303)
Q Consensus 155 dg~~~~~d~~ 164 (303)
|+|++++|+.
T Consensus 165 DEPt~~LD~~ 174 (279)
T PRK13650 165 DEATSMLDPE 174 (279)
T ss_pred ECCcccCCHH
Confidence 9999999765
No 144
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2.8e-13 Score=116.70 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=72.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCC------------------------CCCCCHHHHHhhcc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------------------------YHNLTEQELARVHE 99 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~------------------------~~~~~~~~~~~~~~ 99 (303)
+.+|.+++|+|+||||||||++.|++.+++ .|-+.++..+. +...+..+......
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 999999999999999999999999998764 23333333211 11122222211110
Q ss_pred cC--------CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 100 YN--------FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 100 ~~--------f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. +......+.+...+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 178 (241)
T cd03256 104 LGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178 (241)
T ss_pred cccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 00 0000011122334445554433222 23457888888887777888999999999999999654
No 145
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.35 E-value=6.5e-13 Score=112.94 Aligned_cols=143 Identities=12% Similarity=0.174 Sum_probs=80.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
++++|++++|++...+.....+..++++.+++|+|+||||||||++.|++.+.+. |-+.++..+.. ............
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS-KIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH-hCCHHHHhhhEE
Confidence 4455555555433234555555559999999999999999999999999987542 32333221110 011111111111
Q ss_pred cCCCCCC--------------cccHHHHHHHHHHhhCCCc-------------cccCcccCCCCccCCCCceecCCCcEE
Q 022073 100 YNFDHPD--------------AFDTEKLLSSMEKLRHGQA-------------VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 100 ~~f~~p~--------------~~d~~~l~~~l~~l~~~~~-------------v~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+.++.+. ......+.+.++.+..... .....+|.++.+++..+.+.+.+++++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111111 1122223333322211111 122356777777877777778999999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
++|+|++++|+.
T Consensus 162 llDEP~~~LD~~ 173 (221)
T cd03244 162 VLDEATASVDPE 173 (221)
T ss_pred EEeCccccCCHH
Confidence 999999998654
No 146
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.35 E-value=1.6e-13 Score=125.18 Aligned_cols=123 Identities=16% Similarity=0.055 Sum_probs=78.7
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcccCC
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHEYNF 102 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~~~f 102 (303)
.++.++.+++|.|+||||||||++.|++.+.+. | +.++.++. ++..++..+...+.....
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 339999999999999999999999999987652 2 23333332 223344444332221111
Q ss_pred CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 103 DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 103 ~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
..+.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++.+|+..
T Consensus 104 ~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~ 168 (369)
T PRK11000 104 GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 101111122344555555443322 234688889999888888889999999999999998764
No 147
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.35 E-value=2.5e-12 Score=101.24 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=85.7
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhccc-----------CCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY-----------NFDH 104 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~-----------~f~~ 104 (303)
.+..++.+..+|..|+|+||||||||||.+.++....+. |..++...++- .+..+.+...-.| .+++
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs-~~~pea~Rq~VsY~~Q~paLfg~tVeDN 96 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS-TLKPEAYRQQVSYCAQTPALFGDTVEDN 96 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc-ccChHHHHHHHHHHHcCccccccchhhc
Confidence 333333349999999999999999999999999988764 44555555433 3444433221111 1111
Q ss_pred --------CCcccHHHHHHHHHHhhCCCcc---ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 105 --------PDAFDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 105 --------p~~~d~~~l~~~l~~l~~~~~v---~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...+|.+.+.+.|+.+..+..+ ....+|.+..++....+.....++++++|++++.+|+.
T Consensus 97 lifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~ 167 (223)
T COG4619 97 LIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167 (223)
T ss_pred cccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence 1246788888888888776543 33456777777755445555789999999999998764
No 148
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.35 E-value=2.3e-13 Score=135.62 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=116.3
Q ss_pred ccccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH
Q 022073 17 HFSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL 94 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~ 94 (303)
--+.++++|+.|+|+.. +.+...+.+..++.|..++|.|+|||||||+.++|.+.+.|. |-++++..+... +....+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~-~~~~~l 425 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN-LNLKWL 425 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh-cchHHH
Confidence 34568899999999876 457889999999999999999999999999999999999873 556666654331 222211
Q ss_pred Hhhc----------------ccCCCCCCcccHHHH---------HHHHHHhhCCCcc----ccCcccCCCCccCCCCcee
Q 022073 95 ARVH----------------EYNFDHPDAFDTEKL---------LSSMEKLRHGQAV----DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 95 ~~~~----------------~~~f~~p~~~d~~~l---------~~~l~~l~~~~~v----~~p~~~~~~~~~~~~~~~~ 145 (303)
...- +..|+.|++- .+.. .+.+..+..+-.. .-+.+|.++++|..++++.
T Consensus 426 r~~iglV~QePvlF~~tI~eNI~~G~~dat-~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFATTIRENIRYGKPDAT-REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred HhhcCeeeechhhhcccHHHHHhcCCCccc-HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 1111 1123334321 2222 2233333333221 1245899999999888889
Q ss_pred cCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
+.+++++++||++..+|+ ..+...+..+.+ ...|++...+.|+...
T Consensus 505 v~~P~ILLLDEaTSaLD~--------------~se~~Vq~ALd~--~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDA--------------ESERVVQEALDK--ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhCCCEEEecCcccccCH--------------HHHHHHHHHHHH--hhcCCeEEEEeeehhh
Confidence 999999999999999854 444455555544 3456676666676655
No 149
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.35 E-value=3.6e-13 Score=130.35 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=97.2
Q ss_pred cccccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 20 GFHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
.++++|++|+|++.. .+.....+..+++|..++|+|+||||||||++.|.+.+++. | +
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 488999999997643 56889999999999999999999999999999999998753 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCccc----cCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVD----IPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~----~p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++..++ +|. .+.+.+.+.++ .+..|-... -..+|.++.+|...+++
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred eEEccCCccccccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 445555555444444443322 222 23344443333 333332221 12467778888777778
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|+|++.+|+.
T Consensus 491 l~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHhCCCeEEEeCcccccCHH
Confidence 88999999999999998654
No 150
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.35 E-value=3.5e-12 Score=108.52 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=103.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC---
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--- 124 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--- 124 (303)
+.+|+|.|++||||||+++.|++.+ ++.+++.+.+|+.++..-. ..+... .+.+.+.+.+..+....
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~---~~~~~~~~~~~r~~~~~~~--~~g~~~-----~~~~~~~~~~~~~~~~~~~~ 73 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL---GFHYLDTGAMYRAVALAAL--RHGVDL-----EDEEALVALAAHLDISFESD 73 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCCcccCchhHHHHHHHHH--HcCCCC-----CCHHHHHHHHhcCCeEEecC
Confidence 4799999999999999999999998 6888999988764322111 111111 11122222222211100
Q ss_pred ----cc------------------------ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEe
Q 022073 125 ----AV------------------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 176 (303)
Q Consensus 125 ----~v------------------------~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~ 176 (303)
.+ ..|..+...... ...+...+-+|++|-..+. .+.+..+++|||+
T Consensus 74 ~~~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~----q~~ia~~~~~Vi~GR~~~~--~vl~~a~~~ifl~ 147 (225)
T PRK00023 74 PGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVER----QRAFAREPGLVMDGRDIGT--VVFPDAELKIFLT 147 (225)
T ss_pred CCcceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhCCCEEEEecChhe--EEeCCCCEEEEEE
Confidence 00 000000000000 0011233458899976442 2344478999999
Q ss_pred cChHHHHHHHHhhCccc-cCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCC-HHHHHHHHHHHHHH
Q 022073 177 TDADVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDN-HVAIDLIVQHIRTK 248 (303)
Q Consensus 177 ~~~~~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~-~~~~~~~v~~i~~~ 248 (303)
+|.+.+.+|+.++.... .+.+.+...+....+.+....+++.|....+| ++|+++..+ +..++.+.+.++.+
T Consensus 148 a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~~ 222 (225)
T PRK00023 148 ASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEEK 222 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999988877663211 23345555555555555445566777677776 788776544 34556666666544
No 151
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-12 Score=120.24 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=111.0
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHh--
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR-- 96 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~-- 96 (303)
-.+++|+||+|++++++.++..+..+.+|.-|+|.|+|||||||+++.|.+.+.+. |-+.++.-+.. .++...+.+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~-~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA-SLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh-hCChhhHHHHH
Confidence 36789999999999999999999999999999999999999999999999988764 33444332221 122211110
Q ss_pred --------------hcccCCCCCCcccHHHHHHHHHHhhCCCc---------cc----cCcccCCCCccCCCCceecCCC
Q 022073 97 --------------VHEYNFDHPDAFDTEKLLSSMEKLRHGQA---------VD----IPNYDFKSYKNNVFPARRVNPS 149 (303)
Q Consensus 97 --------------~~~~~f~~p~~~d~~~l~~~l~~l~~~~~---------v~----~p~~~~~~~~~~~~~~~~~~~~ 149 (303)
..+.-..+|++-| +.+.+.+++....+- .. -..+|.++.+|+..++..+.+.
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 0111234455333 444455544332211 11 1246788888877777888999
Q ss_pred cEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 150 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 150 ~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
+++++|||+.++|+. .+...++++..+ -+++++..++|....
T Consensus 494 pl~lLDEPTegLD~~-------------TE~~vL~ll~~~---~~~kTll~vTHrL~~ 535 (573)
T COG4987 494 PLWLLDEPTEGLDPI-------------TERQVLALLFEH---AEGKTLLMVTHRLRG 535 (573)
T ss_pred CeEEecCCcccCChh-------------hHHHHHHHHHHH---hcCCeEEEEeccccc
Confidence 999999999999764 233344454443 235555555555433
No 152
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.4e-13 Score=119.02 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=82.3
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC--------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-------- 84 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~-------- 84 (303)
.+.|++.. ++|+|| + +.++.+++|.|+||||||||++.|++.+++. |-+.++..+
T Consensus 31 ~~~~~~~~il~~is~-----~----------i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 31 LKKTGQTVGVNDVSL-----D----------VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhcCCceEeeeeEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhh
Confidence 45565554 477777 6 9999999999999999999999999988653 333343321
Q ss_pred -----------------CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCcee
Q 022073 85 -----------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 85 -----------------~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~ 145 (303)
++...+..+...+.............+.+.+.++.+...... ....+|.++.+++..+.+.
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111122222211110000000001112233445544433222 2346788888888887888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 176 ~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 176 AVDPDILLMDEAFSALDPL 194 (269)
T ss_pred hcCCCEEEEcCCCccCCHH
Confidence 8999999999999999764
No 153
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.35 E-value=2.4e-13 Score=116.29 Aligned_cols=120 Identities=12% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEEEEeCCCCC---------------------CCCCHHHHHhhc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQDSFY---------------------HNLTEQELARVH 98 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-----~~~~~l~~D~~~---------------------~~~~~~~~~~~~ 98 (303)
+.++.+++|.|+||||||||++.|++.+++ .|-+.++..+.. ...+..+.....
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 899999999999999999999999999875 344444432211 111111111000
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCC-----ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~-----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...+..+.....+...+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 00000000011122344455443321 1123457888888887777888999999999999998654
No 154
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.35 E-value=7e-13 Score=112.11 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------EEEEeCCCCC---CCCCHHHHHhhcccCC---
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------VVLVNQDSFY---HNLTEQELARVHEYNF--- 102 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------~~~l~~D~~~---~~~~~~~~~~~~~~~f--- 102 (303)
+.++.+++|+|+||||||||++.|++.+.+. | +.++.++... ...+..+.........
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~ 101 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGL 101 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccccccc
Confidence 9999999999999999999999999987642 2 3344444322 1133444332221100
Q ss_pred -CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 103 -DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 103 -~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 102 FRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 001111223444555554432222 23467888888887777888999999999999999654
No 155
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.35 E-value=6.5e-13 Score=114.09 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=73.7
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC----------------------CCCCCCHHHHHhhc
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS----------------------FYHNLTEQELARVH 98 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~----------------------~~~~~~~~~~~~~~ 98 (303)
+.++.+|.+++|.|+||||||||++.|++.+++. |-+.++..+ ++..++..+.....
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~ 99 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA 99 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence 3339999999999999999999999999987642 333333221 11222333222111
Q ss_pred ccCCCCC----------CcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHP----------DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p----------~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....... ..-....+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 177 (236)
T cd03219 100 AQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177 (236)
T ss_pred HhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1000000 000112334445554433222 23357888888887777888999999999999999654
No 156
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.35 E-value=5.1e-13 Score=118.84 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=76.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------------------EEEEeCC-CCCCCCCHHHHHhhcccCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------------VVLVNQD-SFYHNLTEQELARVHEYNFD 103 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------------------~~~l~~D-~~~~~~~~~~~~~~~~~~f~ 103 (303)
+.+|.++||.|+||||||||++.|++.+.+. | +.++.++ .++..++..+...+....+.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 9999999999999999999999999987642 2 2233332 22233343333222111111
Q ss_pred CCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.+.....+.+.+.+..+..... .....+|.++.+|+..+.+.+.+++++++|+|++++|+..
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~ 168 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ 168 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1111112234445555544332 2334678888888888888889999999999999998753
No 157
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.35 E-value=6.9e-13 Score=113.64 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=71.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC----------------------CCCCCCHHHHHhhcccC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS----------------------FYHNLTEQELARVHEYN 101 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~----------------------~~~~~~~~~~~~~~~~~ 101 (303)
+.+|.+++|.|+||||||||++.|++.+.+. |-+.++... ++...+..+........
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 102 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI 102 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence 9999999999999999999999999987642 333333221 11112222221111000
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...........+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 167 (232)
T cd03218 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 0000000112233444444332211 22357778888877777888999999999999999654
No 158
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.34 E-value=3.9e-13 Score=110.45 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=81.7
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhcccC
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYN 101 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~~~~ 101 (303)
+++++++|.+...+.....+..+.++.+++|.|+||||||||++.|++.+++ .|-+.++..+... . .........+.
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~i~~~ 80 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD-L-EKALSSLISVL 80 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHH-H-HHHHHhhEEEE
Confidence 4455555533222345555555999999999999999999999999998765 3445554422110 1 11222223344
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+.-+.. .+.+.+ ...+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 81 ~q~~~~~~~-tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~ 132 (178)
T cd03247 81 NQRPYLFDT-TLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132 (178)
T ss_pred ccCCeeecc-cHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 554432221 122222 3467788888887777888999999999999998654
No 159
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.34 E-value=5.6e-13 Score=114.54 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------------------CCCCCHHHHHhhcccCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------------YHNLTEQELARVHEYNF 102 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------------~~~~~~~~~~~~~~~~f 102 (303)
.+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..+.........
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 102 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH 102 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc
Confidence 39999999999999999999999999987643 3333332211 11122222111110000
Q ss_pred CCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 103 DHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 103 ~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.....+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 166 (236)
T TIGR03864 103 GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH
Confidence 0000001122334444443322 1223457888888887778888999999999999999654
No 160
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.34 E-value=9e-13 Score=112.00 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=78.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
+++++++++|.+...+....++..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ............
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR-QLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH-HCCHHHHHhhEE
Confidence 3444454444322223444444559999999999999999999999999987542 33333221110 001111111111
Q ss_pred cCCCCCCc---------------ccHHHHHHHHHHhhCCCcc-------------ccCcccCCCCccCCCCceecCCCcE
Q 022073 100 YNFDHPDA---------------FDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 100 ~~f~~p~~---------------~d~~~l~~~l~~l~~~~~v-------------~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
+.++.+.. .....+.+.+..+...... ....+|.++.+|+..+.+.+.++++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 11111110 1122223333322211111 1126788888887777778889999
Q ss_pred EEEeccccccchh
Q 022073 152 ILLEGILVFHDSR 164 (303)
Q Consensus 152 vildg~~~~~d~~ 164 (303)
+++|+|++++|+.
T Consensus 162 lllDEPt~~LD~~ 174 (220)
T cd03245 162 LLLDEPTSAMDMN 174 (220)
T ss_pred EEEeCccccCCHH
Confidence 9999999999654
No 161
>PRK04182 cytidylate kinase; Provisional
Probab=99.34 E-value=3.4e-12 Score=104.78 Aligned_cols=166 Identities=19% Similarity=0.337 Sum_probs=83.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~ 128 (303)
++|+|+|.+||||||+++.|++.+ ++.+++.|++++... ...+ .+...+.+ ... ..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~l---g~~~id~~~~~~~~~-----~~~g--------~~~~~~~~----~~~----~~ 56 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKL---GLKHVSAGEIFRELA-----KERG--------MSLEEFNK----YAE----ED 56 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCcEecHHHHHHHHH-----HHcC--------CCHHHHHH----Hhh----cC
Confidence 379999999999999999999998 677888665442211 0000 00000000 000 00
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhc
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (303)
+.+........ .........+|++|.+..+- ..+..+++|||++|.+++.+|+..|+.. ............
T Consensus 57 ~~~~~~~~~~~---~~~~~~~~~~Vi~g~~~~~~--~~~~~~~~V~l~a~~e~~~~Rl~~r~~~----~~~~a~~~~~~~ 127 (180)
T PRK04182 57 PEIDKEIDRRQ---LEIAEKEDNVVLEGRLAGWM--AKDYADLKIWLKAPLEVRAERIAEREGI----SVEEALEETIER 127 (180)
T ss_pred chHHHHHHHHH---HHHHhcCCCEEEEEeecceE--ecCCCCEEEEEECCHHHHHHHHHhccCC----CHHHHHHHHHHH
Confidence 00000000000 00110223456777654321 1123689999999999999999888532 222221111111
Q ss_pred c---ccchhhcc---ccccccccEEecCCCCCH-HHHHHHHHHHHH
Q 022073 209 V---KPAFDDFI---LPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (303)
Q Consensus 209 ~---~p~~~~~i---~~~~~~aD~iI~~~~~~~-~~~~~~v~~i~~ 247 (303)
. ...|..++ .+....+|++|+++..+. ..++.+.+.+..
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 128 EESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred HHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 11222222 122368999999775442 344455554443
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=7.2e-13 Score=116.80 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=86.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----CEEEEeCCCCCCCCCHHHHHh
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLVNQDSFYHNLTEQELAR 96 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----~~~~l~~D~~~~~~~~~~~~~ 96 (303)
+++++++++|++...+.....+..+.++.+++|.|+||||||||++.|++.+.+. |-+.++..+.-. ........
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~-~~~~~~~~ 84 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA-KTVWDIRE 84 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc-CCHHHHHh
Confidence 4455666655433334555566669999999999999999999999999998654 445554433211 11111111
Q ss_pred hcccCCCCCC-------------------cccH----HHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 97 VHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 97 ~~~~~f~~p~-------------------~~d~----~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
...+.++.|. .+.. +...+.++.+...... ....+|.++.+++..+.+.+.++++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l 164 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1111121110 0111 1233344444332212 2335777888887777788899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|+|+.++|+..
T Consensus 165 lllDEPt~gLD~~~ 178 (282)
T PRK13640 165 IILDESTSMLDPAG 178 (282)
T ss_pred EEEECCcccCCHHH
Confidence 99999999997653
No 163
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.34 E-value=9.3e-13 Score=114.41 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEEEEeC------------------CC---CCCCCCHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQ------------------DS---FYHNLTEQ 92 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-----~~~~~l~~------------------D~---~~~~~~~~ 92 (303)
...+..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++. +. |....+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 99 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMH 99 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHH
Confidence 333334999999999999999999999999998765 23333332 21 11111111
Q ss_pred HHHhhcccCCCCCCcccHHHHHHHHHHhhCCC-----ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+........+.. ....+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++|+|+|++++|+.
T Consensus 100 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 100 THARETCLALGK--PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred HHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 110000000000 011233445555554432 1223457888888887778888999999999999999764
No 164
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=1.6e-13 Score=114.14 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=88.1
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCC---------
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD--------- 83 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D--------- 83 (303)
++.|+.... +|+|| + ..++.+.|+.|+||+||||..++|.+.+.+ .|-..+...
T Consensus 9 tK~Fg~k~av~~isf-----~----------v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 9 TKSFGDKKAVDNISF-----E----------VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNR 73 (300)
T ss_pred hhccCceeeecceee-----e----------ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhh
Confidence 788999886 99999 8 999999999999999999999999999876 233333331
Q ss_pred --------CCCCCCCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEE
Q 022073 84 --------SFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 84 --------~~~~~~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
..|+.++..+-.. ++.. -+-|.+--...+..+|+.+.....- .+..+|.+..++.......+..++++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~L-kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAEL-KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 2333344332211 1110 1112222233445566655544322 34456777777754445567899999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
|+|+|+.++||.
T Consensus 153 ILDEPFSGLDPV 164 (300)
T COG4152 153 ILDEPFSGLDPV 164 (300)
T ss_pred EecCCccCCChh
Confidence 999999999864
No 165
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.34 E-value=3.8e-13 Score=133.15 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=99.9
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++|+|++ ..+.....+..+++|..++|.|+||||||||++.|++.+.|. .+
T Consensus 472 ~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 35889999999963 347889999999999999999999999999999999998753 34
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..+...++. .|+ .+.+.+.+.++ .+..|-+..+ ..+|.++.+|...+++
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~----~~~-~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGA----KEN-VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred EEEecCceehhHHHHHHHhccC----CCC-CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 5666666665445555444331 122 33344444333 3333322211 3467888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++|+|||++.+|+.
T Consensus 626 ll~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 626 LLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred HhhCCCEEEEeCccccCCHH
Confidence 88999999999999998654
No 166
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.34 E-value=2.7e-13 Score=116.06 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=69.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHH-HhhcccCCCCCCcc-------------
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQEL-ARVHEYNFDHPDAF------------- 108 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~-~~~~~~~f~~p~~~------------- 108 (303)
.+.++.+++|+|+||||||||++.|++.+++ .|-+.++..+... ...... .....+.++.+..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITK-LPPHERARAGIAYVPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC-CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHH
Confidence 3999999999999999999999999998865 2334443322110 111110 01111111111111
Q ss_pred ------cHHHHHHHHHHhh-CCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 ------DTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 ------d~~~l~~~l~~l~-~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...+.+..+. .+. ......+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~ 165 (230)
T TIGR03410 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS 165 (230)
T ss_pred HhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 0111222333322 111 1223357888888877777888999999999999999654
No 167
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=4.4e-13 Score=109.63 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=72.3
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~ 119 (303)
.+..+.++.+++|+|+||||||||++.|++.+++ .|-+.++....- ... ........+.++.+..+......+.+.
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~- 95 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK-KEP-EEVKRRIGYLPEEPSLYENLTVRENLK- 95 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc-cch-HhhhccEEEEecCCccccCCcHHHHhh-
Confidence 3333999999999999999999999999998765 344555443221 111 122222334455443322212222221
Q ss_pred hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 120 l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 96 -----------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 129 (173)
T cd03230 96 -----------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129 (173)
T ss_pred -----------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 7778888877778888999999999999999654
No 168
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.34 E-value=3.5e-12 Score=124.68 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=115.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-- 124 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-- 124 (303)
+..+|.|.||+||||||+++.|++.| ++.+++.+.+|+.++..-... +..+ .|.+.+.+.+..+...-
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~ 510 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEAL---GYHYLDSGALYRLTALAALRA--GVAL-----DDEAAIAALARGLPVRFEG 510 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHh---CCeEecHHHhhhHHHHHHHHc--CcCC-----CCHHHHHHHHhcCCeeecC
Confidence 35689999999999999999999999 788999999997653322211 1111 12333333333222100
Q ss_pred -cc------------------------ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecCh
Q 022073 125 -AV------------------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDA 179 (303)
Q Consensus 125 -~v------------------------~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~ 179 (303)
.+ ..|.++....+.+ +. .....-+|+||--.+. .+.+..|++||++++.
T Consensus 511 ~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q---r~-~~~~~~~v~eGRdigt--vv~p~a~~kifl~a~~ 584 (661)
T PRK11860 511 DRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQ---RS-FRRLPGLVADGRDMGT--VIFPDAALKVFLTASA 584 (661)
T ss_pred CeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH---HH-HhhCCCEEEECCCCcc--EECCCCCeEEEEECCh
Confidence 00 1122211111111 11 1222348999977763 4556689999999999
Q ss_pred HHHHHHHHhhCcc-ccCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCC-HHHHHHHHHHHH
Q 022073 180 DVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDN-HVAIDLIVQHIR 246 (303)
Q Consensus 180 ~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~-~~~~~~~v~~i~ 246 (303)
++|.+|+.+.... ....+.+.+..+...+..-+..+.+.|.+...| ++|+++..+ +..++.+++.|+
T Consensus 585 ~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~ 654 (661)
T PRK11860 585 EARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQ 654 (661)
T ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999874211 123468888888888888888899999887767 666666543 244455555544
No 169
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.34 E-value=7.8e-13 Score=120.07 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=87.3
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---CEEEEeCCC------------
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQDS------------ 84 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---~~~~l~~D~------------ 84 (303)
.+++++++.+|.+ .+.+..++..+..+.+++|.|+||||||||+++|++.+.+. |-+.++..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 3444555554432 12344445559999999999999999999999999987654 333333221
Q ss_pred -------CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEe
Q 022073 85 -------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLE 155 (303)
Q Consensus 85 -------~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvild 155 (303)
+++.++..+...++......+.........+.++.+..... .....+|.++.+|+..+++.+.+++++++|
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22233333332221110110111111234445555444332 233468889999988888888999999999
Q ss_pred ccccccchhh
Q 022073 156 GILVFHDSRV 165 (303)
Q Consensus 156 g~~~~~d~~~ 165 (303)
+|++.+|+..
T Consensus 163 EP~s~LD~~~ 172 (362)
T TIGR03258 163 EPLSALDANI 172 (362)
T ss_pred CccccCCHHH
Confidence 9999999863
No 170
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=9.4e-13 Score=131.38 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=125.4
Q ss_pred cccccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH
Q 022073 16 VHFSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE 93 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~ 93 (303)
.--|++.++|++|+|+.. ..+...+.+.++..|..++|.|+|||||||+..+|.+.++|. |.+.++..+. +.+....
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di-k~lnl~~ 1061 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI-KDLNLKW 1061 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc-ccCCHHH
Confidence 344569999999999955 336888899999999999999999999999999999999763 5566665443 2233322
Q ss_pred HHhhc----------------ccCCCCCCcccHHHHHH---------HHHHhhCCCcccc----CcccCCCCccCCCCce
Q 022073 94 LARVH----------------EYNFDHPDAFDTEKLLS---------SMEKLRHGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 94 ~~~~~----------------~~~f~~p~~~d~~~l~~---------~l~~l~~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
+...- +..|+..+ ...+.+.+ .+..+..|-+..+ ..+|.+++||..++++
T Consensus 1062 LR~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 21111 11133222 34433333 3334444433322 3478899999888889
Q ss_pred ecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccc
Q 022073 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 224 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~a 224 (303)
.+.+++++++||.+..+ |..++...+..+.| ...|++-.-+.|+... .++|
T Consensus 1141 ilRnPkILLLDEATSAL--------------DseSErvVQeALd~--a~~gRT~IvIAHRLST-------------Iqna 1191 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSAL--------------DSESERVVQEALDR--AMEGRTTIVIAHRLST-------------IQNA 1191 (1228)
T ss_pred HHcCCCeeeeeccchhh--------------hhhhHHHHHHHHHH--hhcCCcEEEEecchhh-------------hhcC
Confidence 99999999999999988 66666666677766 3456776667777655 5889
Q ss_pred cEEec
Q 022073 225 DIIIP 229 (303)
Q Consensus 225 D~iI~ 229 (303)
|.|..
T Consensus 1192 D~I~V 1196 (1228)
T KOG0055|consen 1192 DVIAV 1196 (1228)
T ss_pred CEEEE
Confidence 96543
No 171
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.33 E-value=7.5e-13 Score=109.91 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=76.5
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC-CCCHHHHHhhcc
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH-NLTEQELARVHE 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~-~~~~~~~~~~~~ 99 (303)
-++++|| + +.++.+++|+|+||||||||++.|++.+++. |-+.++..+... ............
T Consensus 7 il~~vsl-----~----------i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 71 (190)
T TIGR01166 7 VLKGLNF-----A----------AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71 (190)
T ss_pred eecceeE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE
Confidence 4688888 7 9999999999999999999999999987652 334343322110 000001111111
Q ss_pred cCCCCCC-------------------cccH----HHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 100 YNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 100 ~~f~~p~-------------------~~d~----~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+.++.|. ..+. +.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++
T Consensus 72 ~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 72 LVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred EEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1121110 0111 1223344443332212 2235777888887777788899999999
Q ss_pred eccccccchh
Q 022073 155 EGILVFHDSR 164 (303)
Q Consensus 155 dg~~~~~d~~ 164 (303)
|+|++++|+.
T Consensus 152 DEPt~~LD~~ 161 (190)
T TIGR01166 152 DEPTAGLDPA 161 (190)
T ss_pred cCCcccCCHH
Confidence 9999999654
No 172
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.33 E-value=2.4e-13 Score=134.23 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=97.2
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE--------------------
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV-------------------- 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~-------------------- 77 (303)
+.++++|++|+|++...+.....+..+++|..++|+|+||||||||++.|++.+.+. |-
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 358899999999876667899999999999999999999999999999999998753 32
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHH---------HHhhCCCccc----cCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAVD----IPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l---------~~l~~~~~v~----~p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..+...++ +|+ .+.+.+.+.+ ..+..|-+.. -..+|.++.+|...+++
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred eEEccCCeehhhhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 344444444333333333222 222 3334433333 3332222221 13467788888777788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++|+|+|++.+|+.
T Consensus 608 ll~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYE 627 (694)
T ss_pred HHhCCCEEEEECCCcCCCHH
Confidence 88999999999999998654
No 173
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.33 E-value=9.6e-13 Score=121.51 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=98.8
Q ss_pred hhccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q 022073 9 MIEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------- 75 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------- 75 (303)
+++.++ ++.|++++. +++|| + +.+|.+.+++|.||+|||||.|.|++.+++.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l-----~----------v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSL-----T----------VRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcCCceeecccee-----E----------EeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence 355666 999999885 99999 8 9999999999999999999999999998763
Q ss_pred -----------CEEEEeCC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHH----HHHHhhCCCccccC--cccCCCCc
Q 022073 76 -----------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLS----SMEKLRHGQAVDIP--NYDFKSYK 137 (303)
Q Consensus 76 -----------~~~~l~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~----~l~~l~~~~~v~~p--~~~~~~~~ 137 (303)
|+.++.++ ...+.++..++..+++......+..|+..+.+ .|+.+........+ .++.++.|
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ 152 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQ 152 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHH
Confidence 66667766 34466777776666554332223467766654 34444332223333 34445555
Q ss_pred cCCCCceecCCCcEEEEeccccccch
Q 022073 138 NNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 138 ~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
.+.++.+...+++++|+|+|++.+..
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 55666666788999999999998854
No 174
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.33 E-value=1.4e-12 Score=111.42 Aligned_cols=126 Identities=11% Similarity=-0.010 Sum_probs=74.7
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CC-CCEEEEeCCCC----------------------CCCCC
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL-----HD-QRVVLVNQDSF----------------------YHNLT 90 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l-----~~-~~~~~l~~D~~----------------------~~~~~ 90 (303)
...+..+.+|.+++|.|+||||||||++.|++.+ .+ .|-+.+...+. ....+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 96 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGS 96 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcccc
Confidence 3333349999999999999999999999999998 54 23333333221 11122
Q ss_pred HHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCCCcc--c--cCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQAV--D--IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~~~v--~--~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...+....+.... ....+.+.+.++.+...... . ...+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 175 (227)
T cd03260 97 IYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 (227)
T ss_pred HHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 2222111100000000 00112334445544433222 2 2467888888887777888999999999999999654
No 175
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.33 E-value=6.8e-13 Score=127.51 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=96.2
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++|+|++...+.....+..+++|..++|.|+||||||||++.|++.+++. | +
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 358899999999766567889999999999999999999999999999999998653 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHH---------HHHHHhhCCCcc----ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL---------SSMEKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~---------~~l~~l~~~~~v----~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+...-+..+...... ++ .+.+.+. +.++.+..+-.. ....+|.++.+|+..+++
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFG-----EN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred EEecCCcccccccHHHHHhccC-----CC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 3444454443333333322111 11 2233332 333334333221 123477788888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++|+|+|++.+|+.
T Consensus 469 ll~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HhcCCCEEEEeCCccccCHH
Confidence 88999999999999998654
No 176
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.33 E-value=3.2e-13 Score=116.07 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=75.5
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhc
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVH 98 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~ 98 (303)
...+..+.+|.+++|+|+||||||||++.|++.+.+. | +.+++++. ++...+..+.....
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~ 96 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG 96 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhH
Confidence 3333349999999999999999999999999987642 2 22333322 22222333322211
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
............+.+.+.++.+...... ....+|.++.+++..+++.+.+++++++|+|+.++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 164 (237)
T TIGR00968 97 LEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164 (237)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111100111123344555554432211 22457888888877777788999999999999999654
No 177
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.33 E-value=9.8e-13 Score=110.82 Aligned_cols=124 Identities=14% Similarity=0.211 Sum_probs=75.9
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------CCCCCHHHHHh
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------YHNLTEQELAR 96 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------------~~~~~~~~~~~ 96 (303)
.....+..+.++.+++|+|+||||||||++.|++.+++. |-+.++..+. +...+..+...
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 94 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLR 94 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHH
Confidence 333344449999999999999999999999999987642 3333333221 11222222211
Q ss_pred hcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+. .+.+...+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 95 ~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 160 (208)
T cd03268 95 LLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160 (208)
T ss_pred HHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHH
Confidence 1110000 1223344455554433222 23457888888877777788899999999999999654
No 178
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=5.7e-13 Score=114.84 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=75.4
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC---------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
.....+..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+... ...........+.++.+.
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKT-IDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhh-cChHHhhhcEEEEecCchhchhhHHHH
Confidence 344444449999999999999999999999999987642 333333321110 000010000111111110
Q ss_pred --------cccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 --------AFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 --------~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 165 (241)
T PRK14250 97 IEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165 (241)
T ss_pred HhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 011223444555554421 1223457888888887777788999999999999999654
No 179
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1e-12 Score=111.17 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=84.2
Q ss_pred ccCCCcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC----
Q 022073 11 EASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF---- 85 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~---- 85 (303)
...-++.|++..+ |+|| + +.+ .+++|.|+||||||||++.|++.+.+. |-+.++..+.
T Consensus 3 ~~~l~~~~~~~~~-~vsl-----~----------i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~ 65 (214)
T cd03297 3 CVDIEKRLPDFTL-KIDF-----D----------LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR 65 (214)
T ss_pred eeeeeEecCCeee-CceE-----E----------Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 3444778888877 8998 7 888 999999999999999999999988642 3333332211
Q ss_pred ---------------------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCC
Q 022073 86 ---------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFP 142 (303)
Q Consensus 86 ---------------------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~ 142 (303)
+...+..+...+....+ ....+.+.+.+.++.+...... ....+|.++.+++..+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 66 KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHH
Confidence 11122222111110000 0001122334455554433222 2345778888887777
Q ss_pred ceecCCCcEEEEeccccccchh
Q 022073 143 ARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+++++++|+|++++|+.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~ 165 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRA 165 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHH
Confidence 7888999999999999999654
No 180
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=3.2e-13 Score=123.77 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=75.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------------CCCCCHHHHHhhc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------------YHNLTEQELARVH 98 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------------------~~~~~~~~~~~~~ 98 (303)
+.++.+++|.|+||||||||++.|++.+.+. |-+.++..+. +...+..+...+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~ 130 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG 130 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence 9999999999999999999999999988653 3344433221 1122222222111
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
......+.....+...+.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|+..
T Consensus 131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 131 MELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 0000000001112334455555443222 234678888888888788889999999999999998854
No 181
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.33 E-value=1.4e-12 Score=111.24 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=73.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe--------------------CCCCCCCCCHHHHHhhcccCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN--------------------QDSFYHNLTEQELARVHEYNF 102 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~--------------------~D~~~~~~~~~~~~~~~~~~f 102 (303)
.+.++.+++|+|+||||||||++.|++.+++. |-+.++ ++..+...+..+.........
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~ 108 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR 108 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhc
Confidence 39999999999999999999999999987542 323333 332221122222211110000
Q ss_pred CCCCcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 103 DHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 103 ~~p~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. ...+...+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 109 ~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (225)
T PRK10247 109 N--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171 (225)
T ss_pred C--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 0111233445555554432 1233457778888877777888999999999999999654
No 182
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.33 E-value=5.1e-12 Score=102.92 Aligned_cols=153 Identities=21% Similarity=0.302 Sum_probs=81.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~ 128 (303)
++|+|+|++||||||+++.|++.+ ++.+++.|++++.... ..+ .+...+.... ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l---g~~~~~~~~~~~~~~~----~~g---------~~~~~~~~~~---~~~----- 56 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL---SLKLISAGDIFRELAA----KMG---------LDLIEFLNYA---EEN----- 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCceecHHHHHHHHHH----HcC---------CCHHHHHHHH---hcC-----
Confidence 379999999999999999999988 6778887765432110 000 0000000000 000
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhc
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (303)
|.+........ .......+.+|++|.+..+. +...+|++|||++|.+++.+|+.+|+... .+....++...
T Consensus 57 ~~~~~~~~~~i---~~~~~~~~~~Vi~g~~~~~~--~~~~~d~~v~v~a~~~~r~~R~~~R~~~s----~~~a~~~~~~~ 127 (171)
T TIGR02173 57 PEIDKKIDRRI---HEIALKEKNVVLESRLAGWI--VREYADVKIWLKAPLEVRARRIAKREGKS----LTVARSETIER 127 (171)
T ss_pred cHHHHHHHHHH---HHHHhcCCCEEEEeccccee--ecCCcCEEEEEECCHHHHHHHHHHccCCC----HHHHHHHHHHH
Confidence 00000000000 00111234567788776432 23457899999999999999999987433 22222222221
Q ss_pred c---ccchhhcccc---ccccccEEecCCCCC
Q 022073 209 V---KPAFDDFILP---TKKYADIIIPRGGDN 234 (303)
Q Consensus 209 ~---~p~~~~~i~~---~~~~aD~iI~~~~~~ 234 (303)
. ...|..+..+ .....|++|+++.-+
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~ 159 (171)
T TIGR02173 128 EESEKRRYLKFYGIDIDDLSIYDLVINTSNWD 159 (171)
T ss_pred HHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence 1 1223333222 235678999877544
No 183
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=6.5e-13 Score=112.16 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=70.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcc--------------
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAF-------------- 108 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~-------------- 108 (303)
.+.++ +++|.|+||||||||++.|++.+.+. |-+.+...+.. ... ........+.++.+..+
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL-KQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAW 98 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc-cch-HHHHhheEEecCCCcccccCCHHHHHHHHHH
Confidence 38889 99999999999999999999987642 33333332211 111 11111111222221110
Q ss_pred --------cHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 --------DTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 --------d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+.+.++.+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 164 (211)
T cd03264 99 LKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164 (211)
T ss_pred HhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 01223333444332221 223457888888887777888999999999999998654
No 184
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2e-12 Score=117.02 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=118.9
Q ss_pred hhhhhhccCC-CcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeC
Q 022073 5 TVVDMIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (303)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~ 82 (303)
.++++..+.+ .+.=|++.++|++|.|.+.. |++..++....+|+.|++.|+||+||||+.+.|-+.+.. .|...++.
T Consensus 521 eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 521 EVVDLPGAPPLKVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred hhhcCCCCCCccccCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 3444444555 77778899999999997665 899999999999999999999999999999999998863 23444444
Q ss_pred CCCCCCCCHHHHHh----------------hcccCCCCCCcccHHHH--------HHHHHHhhCCCcccc----CcccCC
Q 022073 83 DSFYHNLTEQELAR----------------VHEYNFDHPDAFDTEKL--------LSSMEKLRHGQAVDI----PNYDFK 134 (303)
Q Consensus 83 D~~~~~~~~~~~~~----------------~~~~~f~~p~~~d~~~l--------~~~l~~l~~~~~v~~----p~~~~~ 134 (303)
.+. +..+...+.. +.+.-|..|.+-|.+.. .+.+-.+..|-.... -..|.+
T Consensus 600 qdI-rnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGG 678 (790)
T KOG0056|consen 600 QDI-RNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGG 678 (790)
T ss_pred chH-HHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCc
Confidence 332 2222222211 11122445665554322 222223333322211 246888
Q ss_pred CCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHh
Q 022073 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 135 ~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
.++|+..++..++.+.++++|+.+..+ |++.+-..+-.+.|-. .+|+...+.|+..
T Consensus 679 EKQRVAiARtiLK~P~iIlLDEATSAL--------------DT~tER~IQaaL~rlc--a~RTtIVvAHRLS 734 (790)
T KOG0056|consen 679 EKQRVAIARTILKAPSIILLDEATSAL--------------DTNTERAIQAALARLC--ANRTTIVVAHRLS 734 (790)
T ss_pred chhhHHHHHHHhcCCcEEEEcchhhhc--------------CCccHHHHHHHHHHHh--cCCceEEEeeeeh
Confidence 899988878888999999999999887 6666666666666532 2344444444443
No 185
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.2e-13 Score=117.29 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=85.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------EEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVL 79 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~~~ 79 (303)
+++++++++|++ .+....++..+.+|.+++|.|+||||||||++.|++.+++. | +.+
T Consensus 12 l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 12 FALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred EEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 445566655532 13455555569999999999999999999999999987642 2 233
Q ss_pred EeCC-CCCCCCCHHHHHhhcccCCC----CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEE
Q 022073 80 VNQD-SFYHNLTEQELARVHEYNFD----HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 80 l~~D-~~~~~~~~~~~~~~~~~~f~----~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+.++ .++...+..+.......... .......+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 169 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCL 169 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333 22233333333222111000 00011123344455554432222 23357888888887777888999999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
++|+|++++|+.
T Consensus 170 lLDEPt~~LD~~ 181 (265)
T PRK10575 170 LLDEPTSALDIA 181 (265)
T ss_pred EEcCCcccCCHH
Confidence 999999999654
No 186
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=5.1e-13 Score=112.81 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=77.1
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCCC-CCCCCHHHHHhhcc
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDSF-YHNLTEQELARVHE 99 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~~-~~~~~~~~~~~~~~ 99 (303)
.++..+.++.+++|.|+||||||||++.|++.+++. | +.++.++.. +...+..+......
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 334449999999999999999999999999988652 2 233333322 22233333322211
Q ss_pred cCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 100 ~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...........+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~ 162 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 100000011223445555554433222 22367888888887777888999999999999999654
No 187
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.32 E-value=1.1e-11 Score=101.12 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccH-HHHHHHHHHhhCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDT-EKLLSSMEKLRHGQ 124 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~-~~l~~~l~~l~~~~ 124 (303)
.++..|.|+|++||||||+++.|++.+ +..+++.|.+............ +...+.-.+ +...+.+..+..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l---~~~~~d~d~~~~~~~g~~~~~~----~~~~g~~~~~~~~~~~~~~l~~-- 72 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL---GYDFIDTDHLIEARAGKSIPEI----FEEEGEAAFRELEEEVLAELLA-- 72 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEChHHHHHHcCCCHHHH----HHHHCHHHHHHHHHHHHHHHHh--
Confidence 356799999999999999999999998 6778888875422111000000 000000000 011112222111
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhh---hcCeEEEEecChHHHHHHHHhhCccccC--CCHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVEKG--RDIA 199 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~---~~d~~I~v~~~~~~~~~R~~~R~~~~~~--~~~~ 199 (303)
....+|..|....++...++ ...+.||+++|.+.+.+|+.+|...... ....
T Consensus 73 -----------------------~~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~ 129 (175)
T PRK00131 73 -----------------------RHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPK 129 (175)
T ss_pred -----------------------cCCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChH
Confidence 11223333332222333333 2358999999999999998776531111 1222
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCCCCH-HHHHHHHHHHH
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIR 246 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~v~~i~ 246 (303)
...+++.....+.| ...+|++|+++..+. ...+.+++.|+
T Consensus 130 ~~~~~~~~~~~~~~-------~~~~dl~idt~~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 130 EKLRDLYEERDPLY-------EEVADITVETDGRSPEEVVNEILEKLE 170 (175)
T ss_pred HHHHHHHHHHHHHH-------HhhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 22333222222222 456899998665443 45566666665
No 188
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.32 E-value=4.1e-13 Score=116.85 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEE--------------------eCCC-CCCCCCHHHHHhhcccC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV--------------------NQDS-FYHNLTEQELARVHEYN 101 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l--------------------~~D~-~~~~~~~~~~~~~~~~~ 101 (303)
++.+|.+++|+|+||||||||++.|++.+.+ .|-+.+ .++. ++...+..+........
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 103 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP 103 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcc
Confidence 3999999999999999999999999998764 233333 2322 11222333322211110
Q ss_pred CCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceec------CCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRV------NPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~------~~~~vvildg~~~~~d~~ 164 (303)
...........+.+.++.+.... ......+|.++.+++..+.+.+ .+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 104 HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 00000011123344455443322 2234467888888877766666 488999999999999654
No 189
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.1e-12 Score=115.94 Aligned_cols=144 Identities=10% Similarity=0.071 Sum_probs=85.1
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC---CCCHHHH
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH---NLTEQEL 94 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~---~~~~~~~ 94 (303)
+++|++++|+... .+.+...+..+.+|.+++|.|+||||||||++.|++.+.+. |.+.++..+... .......
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 82 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82 (288)
T ss_pred EEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHH
Confidence 3455555554321 13455566669999999999999999999999999988653 444444322110 0111111
Q ss_pred HhhcccCCCCCC--c-----------------cc----HHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCC
Q 022073 95 ARVHEYNFDHPD--A-----------------FD----TEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 95 ~~~~~~~f~~p~--~-----------------~d----~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
.....+.|++|. - .. .....+.+..+.... .-....+|.++.+++..+.+.+.+
T Consensus 83 ~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~ 162 (288)
T PRK13643 83 RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAME 162 (288)
T ss_pred HhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhC
Confidence 122223333321 0 01 112233344433321 112235788888888777788899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|+|++++|+..
T Consensus 163 p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 163 PEVLVLDEPTAGLDPKA 179 (288)
T ss_pred CCEEEEECCccCCCHHH
Confidence 99999999999997653
No 190
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=3.8e-12 Score=109.53 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=102.6
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHH---hhcccCCCCCCc------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELA---RVHEYNFDHPDA------ 107 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~---~~~~~~f~~p~~------ 107 (303)
+.+++.++++|.+.||.|.||+|||||.+++..+-.| .|-++++.++... ++..++. ..-...|++++-
T Consensus 22 l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~-l~~~~Lr~~R~~IGMIFQhFnLLssrTV 100 (339)
T COG1135 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA-LSEAELRQLRQKIGMIFQHFNLLSSRTV 100 (339)
T ss_pred eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc-CChHHHHHHHhhccEEeccccccccchH
Confidence 3334444999999999999999999999999876554 3567777765442 4444332 222334554321
Q ss_pred ------------cc----HHHHHHHHHHhhCCCc-cccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh-----
Q 022073 108 ------------FD----TEKLLSSMEKLRHGQA-VDIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----- 164 (303)
Q Consensus 108 ------------~d----~~~l~~~l~~l~~~~~-v~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~----- 164 (303)
.. ..+..+.|+.+..... -.+| .+|.++++|+.++++.+.++++++.|++++.+||+
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sI 180 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 11 1233344444433322 2334 68999999999999999999999999999999995
Q ss_pred ------hhhhcCeEEEEecChHHHHHHHHhh
Q 022073 165 ------VRELMNMKIFVDTDADVRLARRIRR 189 (303)
Q Consensus 165 ------~~~~~d~~I~v~~~~~~~~~R~~~R 189 (303)
+++.+.+.|.+-+..-...+++-.|
T Consensus 181 L~LL~~In~~lglTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 181 LELLKDINRELGLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred HHHHHHHHHHcCCEEEEEechHHHHHHHhhh
Confidence 3455677877777776667776655
No 191
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=4.1e-13 Score=118.84 Aligned_cols=145 Identities=10% Similarity=0.095 Sum_probs=85.6
Q ss_pred cccccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCC---CC-CH
Q 022073 20 GFHMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH---NL-TE 91 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~---~~-~~ 91 (303)
.++++|++++|++.. .+....++..+.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+... .. ..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 356677777775432 2466667777999999999999999999999999998865 2334443321100 00 00
Q ss_pred HHHHhhcccCCCCCC-------------------cccH----HHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCcee
Q 022073 92 QELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~-------------------~~d~----~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~ 145 (303)
........+.++.|. .... ..+.+.+..+... . ......+|.++.+++..+.+.
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 011000111111110 0111 1222334433331 1 122345788888888777788
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 166 ~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred HhCCCEEEEeCCcccCCHH
Confidence 8999999999999999765
No 192
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.1e-12 Score=115.62 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=76.7
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-CCCCHHHHHhhcccCCCCCC---------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-HNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
...++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+.. .............+.++.|.
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 101 (283)
T PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVY 101 (283)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHH
Confidence 33344449999999999999999999999999988643 33444432221 00111111111122222210
Q ss_pred --------------cccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 107 --------------AFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 107 --------------~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
......+...++.+.... ......+|.++.+++..+.+.+.+++++|+|+|+.++|+..
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~ 176 (283)
T PRK13636 102 QDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176 (283)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 001122333444443332 22334578888888877778889999999999999997653
No 193
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=9.6e-13 Score=115.54 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=76.7
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC---------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
....++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.- ............+.|+.|.
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVN-AENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECC-CCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 344444459999999999999999999999999988653 33444332211 1111111111122222210
Q ss_pred ----------cccH----HHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ----------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ----------~~d~----~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+. ..+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 172 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 0111 2233344443332212 23467888888888888888999999999999999765
No 194
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.32 E-value=6.5e-13 Score=127.82 Aligned_cols=146 Identities=10% Similarity=0.118 Sum_probs=98.6
Q ss_pred cccccccCcccccCCC---CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH
Q 022073 18 FSGFHMDGLEVRNKET---GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE 93 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~ 93 (303)
.+.++++|++|+|.+. ..+.+...+..+++|.+++|+|+||||||||++.|++.+.+. |-+.++..+. ...+..+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i-~~~~~~~ 413 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV-SADSRDD 413 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-CCCCHHH
Confidence 3468899999999764 235788899999999999999999999999999999988763 4455554332 2233333
Q ss_pred HHhhcccCCCCCC------------cccHHHHHHHHHHhhCCCccc-c-------CcccCCCCccCCCCceecCCCcEEE
Q 022073 94 LARVHEYNFDHPD------------AFDTEKLLSSMEKLRHGQAVD-I-------PNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 94 ~~~~~~~~f~~p~------------~~d~~~l~~~l~~l~~~~~v~-~-------p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
....-.+.++++. ..+.+.+.+.++.......+. . ..+|.++.+|+..+++.+.+++++|
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2222222221110 123344455555544333221 1 3477788888877788889999999
Q ss_pred Eeccccccchh
Q 022073 154 LEGILVFHDSR 164 (303)
Q Consensus 154 ldg~~~~~d~~ 164 (303)
+|+|++.+|+.
T Consensus 494 lDE~ts~LD~~ 504 (555)
T TIGR01194 494 FDEWAADQDPA 504 (555)
T ss_pred EeCCccCCCHH
Confidence 99999998654
No 195
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.3e-12 Score=115.14 Aligned_cols=144 Identities=8% Similarity=0.050 Sum_probs=82.9
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC---CCHHHH
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN---LTEQEL 94 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~---~~~~~~ 94 (303)
++++++++|++.. .+....++..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.... ......
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHH
Confidence 4555666554321 23555556669999999999999999999999999987653 3333333211100 000011
Q ss_pred HhhcccCCCCCC-------------------cccH----HHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCC
Q 022073 95 ARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 95 ~~~~~~~f~~p~-------------------~~d~----~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
.....+.++.+. .++. ..+.+.++.+.... ......+|.++.+++..+.+.+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (280)
T PRK13649 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAME 163 (280)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 110111111110 0111 12233444443321 122345788888888777788899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|+|++++|+..
T Consensus 164 p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 164 PKILVLDEPTAGLDPKG 180 (280)
T ss_pred CCEEEEeCCcccCCHHH
Confidence 99999999999997653
No 196
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.32 E-value=6.6e-13 Score=115.31 Aligned_cols=137 Identities=11% Similarity=0.087 Sum_probs=87.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------EEEEeCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------VVLVNQDS 84 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------~~~l~~D~ 84 (303)
++++|++++|.+ .+....++..+.+|.+++|+|+||||||||++.|++.+++. | +.++.++.
T Consensus 13 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 13 LLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred EEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 455666666542 23555566669999999999999999999999999988653 2 22333332
Q ss_pred -CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEecccccc
Q 022073 85 -FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (303)
Q Consensus 85 -~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~ 161 (303)
++...+..+..... + ... ..+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++
T Consensus 91 ~l~~~~tv~enl~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 91 RLLPWKKVIDNVGLG---L--KGQ-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred cCCCCCcHHHHHHhc---c--cch-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 22223333332221 0 000 123344555555443322 23457888888887777888999999999999999
Q ss_pred chhh
Q 022073 162 DSRV 165 (303)
Q Consensus 162 d~~~ 165 (303)
|+..
T Consensus 165 D~~~ 168 (257)
T PRK11247 165 DALT 168 (257)
T ss_pred CHHH
Confidence 7653
No 197
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.2e-13 Score=116.93 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=73.8
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC-----------
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD----------- 106 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~----------- 106 (303)
...+..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+... ...........+.++.|.
T Consensus 21 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~~~ 99 (277)
T PRK13652 21 NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK-ENIREVRKFVGLVFQNPDDQIFSPTVEQD 99 (277)
T ss_pred eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-CCHHHHHhheEEEecCcccccccccHHHH
Confidence 3333349999999999999999999999999987653 333333321110 111111111111122110
Q ss_pred --------cccHH----HHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 --------AFDTE----KLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 --------~~d~~----~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.++.. ...+.+..+...... ....+|.++.+++..+.+.+.+++++|+|+|+.++|+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~ 171 (277)
T PRK13652 100 IAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171 (277)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 01111 223334443332212 23457788888877777888999999999999999764
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=7.3e-12 Score=123.53 Aligned_cols=190 Identities=16% Similarity=0.187 Sum_probs=116.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc-
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD- 127 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~- 127 (303)
.+|+|.|++||||||+++.|++.| ++.+++.+.+|+..+..-... ....+. ...|.+.+.+.+..+..+..+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l---~~~~~~~g~~~r~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL---GYAYLDTGAMYRACAWWCLKQ--GIDLDA-ELVDEQVVTEAVGEFFTGLHFDI 75 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCcEeecCcEeHHHHHHHHhc--CCCcch-hhhhhhhhHHHHHHHHhCCcEEE
Confidence 489999999999999999999999 688999999886543211111 111110 0122333333333222111000
Q ss_pred ----------------------------------cCcccCCCCccCCCCceecC-------CCcEEEEeccccccchhhh
Q 022073 128 ----------------------------------IPNYDFKSYKNNVFPARRVN-------PSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 128 ----------------------------------~p~~~~~~~~~~~~~~~~~~-------~~~vvildg~~~~~d~~~~ 166 (303)
.|........++.. ..... +..-+|+||-..+. .+.
T Consensus 76 ~~~~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~-~~~~~~~~~~~~~~~~~v~eGRdigt--vv~ 152 (712)
T PRK09518 76 SVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRA-YIAREASADSFSGGLGIVAEGRDITT--VVA 152 (712)
T ss_pred ecCCCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCccccccccCcEEEecCccce--EEe
Confidence 01111111111000 00001 12359999987763 455
Q ss_pred hhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCCH-HHHHHHHHH
Q 022073 167 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNH-VAIDLIVQH 244 (303)
Q Consensus 167 ~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~-~~~~~~v~~ 244 (303)
+..|++||++|+.++|.+|+..+... .+.+.+..+...+...+. +.+.|.....| ++|++...+. ..++.+.+.
T Consensus 153 p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~ 228 (712)
T PRK09518 153 PDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGL 228 (712)
T ss_pred cCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 67899999999999999999988642 678888888888888888 99999655555 6777665543 555666666
Q ss_pred HHHHhcc
Q 022073 245 IRTKLGQ 251 (303)
Q Consensus 245 i~~~l~~ 251 (303)
|...+.+
T Consensus 229 i~~~~~~ 235 (712)
T PRK09518 229 VEDAIEE 235 (712)
T ss_pred HHhhhhh
Confidence 6655543
No 199
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.31 E-value=1.5e-12 Score=105.75 Aligned_cols=107 Identities=7% Similarity=-0.064 Sum_probs=68.7
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM 117 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l 117 (303)
...+..+.++.+++|.|+||||||||++.|++.+++. |-+.++.. ....+.++.+..+. ..+.+.+
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~-~tv~~nl 84 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPL-GTLREQL 84 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCcccc-ccHHHHh
Confidence 3333449999999999999999999999999987653 33333221 01122222221111 1122222
Q ss_pred HHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 118 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 118 ~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. . ....+|.++.+++..+.+.+.+++++++|+|++.+|+.
T Consensus 85 ~~---~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 85 IY---P---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred hc---c---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 11 0 22467888888877777888999999999999998654
No 200
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=4.9e-13 Score=114.59 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=75.7
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------------EEeCCC-CCCCCCHHHHHhhccc
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------------LVNQDS-FYHNLTEQELARVHEY 100 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~------------------~l~~D~-~~~~~~~~~~~~~~~~ 100 (303)
++..+.+|.+++|+|+||||||||++.|++.+++. |-+ ++.++. ++...+..+.......
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccc
Confidence 34449999999999999999999999999987642 222 333332 2222333332221110
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
........+.+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~ 163 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 00000111223344555554433222 22357888888887777888999999999999999654
No 201
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=4.8e-13 Score=118.15 Aligned_cols=144 Identities=14% Similarity=0.125 Sum_probs=85.3
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC---CCHHHH
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN---LTEQEL 94 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~---~~~~~~ 94 (303)
+++|++++|.+.. .+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.... ......
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 4566666664321 24566666669999999999999999999999999987653 3344433221100 001111
Q ss_pred HhhcccCCCCCC-------------------cccH----HHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCC
Q 022073 95 ARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 95 ~~~~~~~f~~p~-------------------~~d~----~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
.....+.|+.|. ..+. +...+.+..+..... .....+|.++.+++..+.+.+.+
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred HhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 111122222221 0111 223344444433211 12345778888887777788899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|+|++++|+..
T Consensus 164 p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQS 180 (286)
T ss_pred CCEEEEECCcccCCHHH
Confidence 99999999999997653
No 202
>PRK10908 cell division protein FtsE; Provisional
Probab=99.31 E-value=1.3e-12 Score=111.15 Aligned_cols=123 Identities=14% Similarity=0.068 Sum_probs=72.2
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHH---HHhhcccCCCCCCc---------
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDA--------- 107 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~---~~~~~~~~f~~p~~--------- 107 (303)
.+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ...... ......+.++.+..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT-RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDN 99 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-cCChhHHHHHHhheEEEecCccccccccHHHH
Confidence 33339999999999999999999999999988643 33444332211 011100 01111111111110
Q ss_pred ---------ccH----HHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ---------FDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ---------~d~----~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++. +.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (222)
T PRK10908 100 VAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171 (222)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 111 1223344444332212 22357778888877777788999999999999999654
No 203
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.31 E-value=2.3e-12 Score=108.20 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=82.9
Q ss_pred ccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------EEEEeCCCCCCCCCH
Q 022073 23 MDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVLVNQDSFYHNLTE 91 (303)
Q Consensus 23 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------~~~l~~D~~~~~~~~ 91 (303)
++|++++|.+.. .+.....+..+++|.+++|.|+||||||||++.|++.+++. | +.++.++......+.
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI 82 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence 445555554321 13445555559999999999999999999999999987652 2 455666654434444
Q ss_pred HHHHhhcccCCCCCCcccHHHHHHHH---------HHhhCCC----ccccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 92 QELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d~~~l~~~l---------~~l~~~~----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
.+...... .++.+...+.+ ..+..+. ......+|.++.+++..+.+.+.+++++++|+|+
T Consensus 83 ~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 83 RENILFGK-------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred HHHhccCC-------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 44332211 11111222222 1111111 0122457778888877777888999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+++|+.
T Consensus 156 ~~LD~~ 161 (204)
T cd03250 156 SAVDAH 161 (204)
T ss_pred ccCCHH
Confidence 998654
No 204
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.31 E-value=6.3e-13 Score=116.18 Aligned_cols=126 Identities=8% Similarity=0.070 Sum_probs=74.4
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------------------------CCCCCH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------------------YHNLTE 91 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------------------~~~~~~ 91 (303)
..++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+. ....+.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 107 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTV 107 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCH
Confidence 3333449999999999999999999999999988653 3333333211 111222
Q ss_pred HHHHhhcccCCCC-CCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 92 QELARVHEYNFDH-PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 92 ~~~~~~~~~~f~~-p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+........... ........+.+.++.+... . ......+|.++.+++..+.+.+.+++++++|+|++.+|+.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~ 184 (265)
T TIGR02769 108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184 (265)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2211100000000 0001122334455555432 1 1233457888888887777888999999999999999654
No 205
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.31 E-value=4.8e-13 Score=121.16 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcccCC--
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHEYNF-- 102 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~~~f-- 102 (303)
+.++.+++|.|+||||||||++.|++.+++. | +.++.++. +++.++..+...+....+
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~ 104 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR 104 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc
Confidence 9999999999999999999999999987652 2 33344432 333344444433221110
Q ss_pred -CCCC-cccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 103 -DHPD-AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 103 -~~p~-~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
..+. ....+...+.++.+...... ....+|.++.+|+..+++.+.+++++++|+|+..+|+..+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 105 RERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 0000 11123444556655443322 3346788888888888888899999999999999988643
No 206
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.30 E-value=1.5e-12 Score=110.03 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-----------------------CCCCHHHHHhhccc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-----------------------HNLTEQELARVHEY 100 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-----------------------~~~~~~~~~~~~~~ 100 (303)
+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ...+..+.......
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 102 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI 102 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence 9999999999999999999999999988642 33433332211 11122211111000
Q ss_pred CCCC-CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~-p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.. ...-......+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 169 (213)
T cd03262 103 KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 0000 0000011233344444332212 22357888888877777788899999999999999654
No 207
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.30 E-value=1.1e-12 Score=109.17 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=87.2
Q ss_pred ccccCcccccCCC----CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CCC-CEEEEeCCCCCCCCCHHH
Q 022073 21 FHMDGLEVRNKET----GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HDQ-RVVLVNQDSFYHNLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~~-~~~~l~~D~~~~~~~~~~ 93 (303)
+++++++++|++. ..+.....+..+.++.+++|.|+||||||||++.|++.+ ++. |-+.++..+.. ...
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~----~~~ 79 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD----KRS 79 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc----hHh
Confidence 4566777777542 234666677779999999999999999999999999988 643 44555443322 111
Q ss_pred HHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 94 LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+.++.+..+....+.+.+..... ...+|.++.+++..+.+.+.+++++++|+|+.++|..
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-----LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-----hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 12223344544433332222333221110 0167888888877777888999999999999998654
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.2e-12 Score=108.90 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=82.3
Q ss_pred ccccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CCCEEEEeCCCCCCCCCHHHHH
Q 022073 21 FHMDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQDSFYHNLTEQELA 95 (303)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~~~~~~l~~D~~~~~~~~~~~~ 95 (303)
+++++++++|.+. ..+.....+..+.++.+++|+|+||||||||++.|++.+. ..+-+.++..+.. ....
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~~ 78 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNFQ 78 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHhh
Confidence 3455666655431 1235555556699999999999999999999999998642 2344555443221 1111
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....+.++.+..+......+.+..... . ..+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL---L--RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH---H--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 222333444333322122222221000 0 167888888887777888999999999999998654
No 209
>PTZ00243 ABC transporter; Provisional
Probab=99.30 E-value=1.1e-12 Score=138.63 Aligned_cols=165 Identities=13% Similarity=0.176 Sum_probs=112.1
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.+.|+|++|+|++...+.+.+++..+++|..|||+|++|||||||++.|.+.+.+. .+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 568999999999887667999999999999999999999999999999999988652 34
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC---------Ccccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG---------QAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~---------~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++... + +.++.+.+.+.++..... -+..+ ..+|.++.|++..+++
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp----~---~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDP----F---LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred eEECCCCccccccHHHHhCc----c---cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 55566655544444443321 1 124445555555543322 11111 2467777788777777
Q ss_pred ecCC-CcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHh
Q 022073 145 RVNP-SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 145 ~~~~-~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
.+.+ ++++|+||+++.+|++ .+..+++.+.+. ..+.+...+.|+..
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~--------------te~~Iq~~L~~~--~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPA--------------LDRQIQATVMSA--FSAYTVITIAHRLH 1506 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHH--------------HHHHHHHHHHHH--CCCCEEEEEeccHH
Confidence 7874 8999999999998543 344445555432 23455555555553
No 210
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.30 E-value=7.1e-13 Score=107.31 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=72.9
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccC
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYN 101 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~ 101 (303)
+++++++|++. +.....+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. .....+.
T Consensus 3 ~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~~------- 72 (163)
T cd03216 3 LRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-FASPRDA------- 72 (163)
T ss_pred EEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-cCCHHHH-------
Confidence 44555544321 3444455559999999999999999999999999988653 33444432211 0110000
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... .-...+.+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 73 ------------------~~~-~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 73 ------------------RRA-GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred ------------------Hhc-CeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 00112337788888877777888999999999999998654
No 211
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.30 E-value=1.4e-12 Score=137.53 Aligned_cols=165 Identities=12% Similarity=0.156 Sum_probs=113.0
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--------------------EE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--------------------VV 78 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--------------------~~ 78 (303)
+.++|+|++++|++...+.+.+++..+++|..|||+|++|||||||++.|.+.+...| +.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence 4588999999998877789999999999999999999999999999999999886443 34
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC---------cccc----CcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---------AVDI----PNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~---------~v~~----p~~~~~~~~~~~~~~~~ 145 (303)
++++|.+...-+..++... + +.++.+.+.+.++...... +..+ ..+|.++.+++..+++.
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp----~---~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDP----Y---EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred EEeCCCccCccCHHHHhCc----c---cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4555555443343333211 1 1245556666665443221 1111 14677777887778888
Q ss_pred cCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHh
Q 022073 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
+.+++++|+||+++.+|. ..+..+.+.++.. ..+.++..+.|+..
T Consensus 1369 Lr~~~ILlLDEaTS~lD~--------------~Te~~I~~~L~~~--~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDP--------------VTLQIIRKTLKQS--FSNCTVILSEHRVE 1413 (1490)
T ss_pred hCCCCEEEEeCCcccCCH--------------HHHHHHHHHHHHH--cCCCEEEEEecCHH
Confidence 899999999999999854 4445555555432 23455555555543
No 212
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=5.3e-13 Score=121.78 Aligned_cols=144 Identities=10% Similarity=0.098 Sum_probs=87.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEe
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVN 81 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~ 81 (303)
+++++++++|.+ .+.+..++.++..+.+++|.|+||||||||++.|++...+. | +.++.
T Consensus 20 l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vf 97 (377)
T PRK11607 20 LEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97 (377)
T ss_pred EEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 444555554432 12334445559999999999999999999999999987653 2 23333
Q ss_pred CC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 82 QD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 82 ~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
++ .+++.++..++..++......+.....+.+.+.++.+..... .....+|.++.+|+..+++.+.+++++++|+|+
T Consensus 98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 33 233334444433322110000111111233445555444322 223368888899988888888999999999999
Q ss_pred cccchhhh
Q 022073 159 VFHDSRVR 166 (303)
Q Consensus 159 ~~~d~~~~ 166 (303)
+.+|...+
T Consensus 178 s~LD~~~r 185 (377)
T PRK11607 178 GALDKKLR 185 (377)
T ss_pred ccCCHHHH
Confidence 99998643
No 213
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.29 E-value=1.8e-12 Score=108.96 Aligned_cols=120 Identities=16% Similarity=0.062 Sum_probs=71.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-------------------------CCCCHHHHHhhc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-------------------------HNLTEQELARVH 98 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-------------------------~~~~~~~~~~~~ 98 (303)
+.+|.+++|.|+||||||||++.|++.+++. |-+.+...+.. ...+..+...+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~ 100 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLG 100 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHH
Confidence 9999999999999999999999999988653 33444332211 111111111110
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+.....+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 101 LKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 0000000001112233444444332222 23457778888877777888999999999999999654
No 214
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.29 E-value=5.8e-13 Score=140.70 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=114.5
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++|+|++|+|++...+.+.+++.++++|..|||+|++|||||||++.|.+.+.+. .+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 569999999999877668999999999999999999999999999999999988652 34
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCcccc----CcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~v~~----p~~~~~~~~~~~~~~~ 144 (303)
.++++|.+...-+..++... |+ .++.+.+.+.++... .|-+..+ ..+|.++.|++..+++
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp----~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDP----FS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred eEECCCCcccCccHHHHcCc----cc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 55666665544444443221 11 244445555554322 2222211 2467778888777888
Q ss_pred ecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 145 RVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
.+.+++++|+||+++.+|. ..+..+.+.+++. ..+++.-.+.|+...
T Consensus 1436 LLr~~~ILiLDEaTSalD~--------------~Te~~Iq~~l~~~--~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDL--------------ETDNLIQSTIRTQ--FEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHcCCCEEEEECCcccCCH--------------HHHHHHHHHHHHH--cCCCEEEEEecCHHH
Confidence 8899999999999999844 4455555666442 235566666665543
No 215
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2e-12 Score=114.32 Aligned_cols=144 Identities=11% Similarity=0.120 Sum_probs=83.2
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCC---CHHHH
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNL---TEQEL 94 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~---~~~~~ 94 (303)
+++|++++|.+.. .+.+..++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+..... .....
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (287)
T PRK13641 4 KFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKL 83 (287)
T ss_pred EEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 3445555553211 13445555559999999999999999999999999988653 33444332221000 00111
Q ss_pred HhhcccCCCCCC-------------------cc----cHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCC
Q 022073 95 ARVHEYNFDHPD-------------------AF----DTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 95 ~~~~~~~f~~p~-------------------~~----d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
.....+.++.|. .. ..+...+.+..+... . ......+|.++.+|+..+.+.+.+
T Consensus 84 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~ 163 (287)
T PRK13641 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYE 163 (287)
T ss_pred HhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 111111111110 00 111233444544432 1 123346788888888777888899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|+|++++|+..
T Consensus 164 p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 164 PEILCLDEPAAGLDPEG 180 (287)
T ss_pred CCEEEEECCCCCCCHHH
Confidence 99999999999997653
No 216
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.1e-12 Score=113.71 Aligned_cols=144 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred cccCcccccCCC----CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHh
Q 022073 22 HMDGLEVRNKET----GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR 96 (303)
Q Consensus 22 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~ 96 (303)
.++|++++|++. ..+.+...+.++.+|.+++|+|+||||||||++.|++.+.+. |.+.++...............
T Consensus 6 ~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 6 KCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred EEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhh
Confidence 455666666432 123555566669999999999999999999999999988753 444444432211000011111
Q ss_pred hcccCCCCCC-------------------ccc----HHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcE
Q 022073 97 VHEYNFDHPD-------------------AFD----TEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 97 ~~~~~f~~p~-------------------~~d----~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
...+.|+.|. ... .+.+.+.++.+..... .....+|.++.+++..+.+.+.++++
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 165 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC 165 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1112222111 001 1223333444333221 23346788888888777888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|+|++++|+..
T Consensus 166 lllDEPt~gLD~~~ 179 (280)
T PRK13633 166 IIFDEPTAMLDPSG 179 (280)
T ss_pred EEEeCCcccCCHHH
Confidence 99999999997653
No 217
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.29 E-value=4.1e-12 Score=106.92 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-------------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------------- 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l------------------- 80 (303)
+++++++++|+....+....++..+.++.+++|.|+||||||||++.|++.+.+. |.+.+
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 4556666666433234556666669999999999999999999999999987542 32333
Q ss_pred -eCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEecccc
Q 022073 81 -NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (303)
Q Consensus 81 -~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~ 159 (303)
.++......+..+.... +. .++.+.+.+.++ . ......+|.++.+++..+.+.+.+++++++|+|+.
T Consensus 87 v~q~~~~~~~tv~~~l~~----~~---~~~~~~~~~~l~---~--~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 87 IPQDPTLFSGTIRSNLDP----FD---EYSDEEIYGALR---V--SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred EecCCcccCccHHHHhcc----cC---CCCHHHHHHHhh---c--cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 33322211122111110 10 122222333333 1 12234577778888777777788999999999999
Q ss_pred ccchh
Q 022073 160 FHDSR 164 (303)
Q Consensus 160 ~~d~~ 164 (303)
++|+.
T Consensus 155 ~LD~~ 159 (207)
T cd03369 155 SIDYA 159 (207)
T ss_pred cCCHH
Confidence 99654
No 218
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.29 E-value=3.1e-12 Score=109.93 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=76.8
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-------------------
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ------------------- 82 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~------------------- 82 (303)
++|++++|.....+....++..+.+|.+++|+|+||||||||++.|++.+++. |-+.++.
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 34444444322223444444459999999999999999999999999988642 3333333
Q ss_pred -CCCCCCCCHHHHHhhcccCCCCCCcccHHHHHH---------HHHHhhCC--C--ccccCcccCCCCccCCCCceecCC
Q 022073 83 -DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHG--Q--AVDIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 83 -D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~---------~l~~l~~~--~--~v~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
+..+...+..+..... .+. .....+.. .+..+..+ . ......+|.++.+++..+.+.+.+
T Consensus 83 q~~~~~~~tv~~nl~~~-----~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 83 QENVLFNRSIRDNIALA-----DPG-MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred CCchhccchHHHHhhcc-----CCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 2211111221111110 010 11111111 11111101 0 112245777888887777788899
Q ss_pred CcEEEEeccccccchh
Q 022073 149 SDVILLEGILVFHDSR 164 (303)
Q Consensus 149 ~~vvildg~~~~~d~~ 164 (303)
++++++|+|++++|+.
T Consensus 157 p~llllDEP~~~LD~~ 172 (237)
T cd03252 157 PRILIFDEATSALDYE 172 (237)
T ss_pred CCEEEEeCCcccCCHH
Confidence 9999999999999654
No 219
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.4e-12 Score=111.72 Aligned_cols=126 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCcc---
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAF--- 108 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~--- 108 (303)
..++..+.+|.+++|+|+||||||||++.|++.++ ..|-+.++..+... ............+.++.+..+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~t 102 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKS 102 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCc
Confidence 33333499999999999999999999999999753 13444443322110 000111111111111111111
Q ss_pred -------------------cHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 109 -------------------DTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 109 -------------------d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
..+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+
T Consensus 103 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 103 IFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 (253)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1122223333332211 112345777888887777778889999999999999965
Q ss_pred h
Q 022073 164 R 164 (303)
Q Consensus 164 ~ 164 (303)
.
T Consensus 183 ~ 183 (253)
T PRK14242 183 I 183 (253)
T ss_pred H
Confidence 4
No 220
>PRK07261 topology modulation protein; Provisional
Probab=99.29 E-value=7.5e-12 Score=102.03 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=71.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
.|+|+|++|||||||++.|++.+ ++.+++.|.++... .+. ..+.+.+...+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~---~~~~i~~D~~~~~~-----------~~~---~~~~~~~~~~~~~~--------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY---NCPVLHLDTLHFQP-----------NWQ---ERDDDDMIADISNF--------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeEecCCEEecc-----------ccc---cCCHHHHHHHHHHH---------
Confidence 58999999999999999999987 56677787765210 011 12222233322221
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccc-cchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVF-HDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~-~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
+.... +|+||.+.. ..+...+.+|.+||+++|..+++.|+++|....+++.
T Consensus 56 ----------------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~ 107 (171)
T PRK07261 56 ----------------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKT 107 (171)
T ss_pred ----------------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCc
Confidence 12223 799998865 2245556899999999999999999999975544443
No 221
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=1.8e-12 Score=108.95 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=81.1
Q ss_pred Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------
Q 022073 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------- 85 (303)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------- 85 (303)
++.|++. -++|+|| + +.++.+++|.|+||||||||++.|++.+++. |-+.++..+.
T Consensus 8 ~~~~~~~~~l~~vs~-----~----------i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 8 ACERDERILFSGLSF-----T----------LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred EEEECCEEEEecceE-----E----------ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHh
Confidence 3445443 2477777 6 9999999999999999999999999987653 3333333221
Q ss_pred -------------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCc
Q 022073 86 -------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 86 -------------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
+...+..+......... ...+.+.+.+.++.+..... .....+|.++.+++..+.+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhc---CccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 11122222221111000 00122344445555443221 2234577788888777778889999
Q ss_pred EEEEeccccccchh
Q 022073 151 VILLEGILVFHDSR 164 (303)
Q Consensus 151 vvildg~~~~~d~~ 164 (303)
++++|+|++++|+.
T Consensus 150 llllDEPt~~LD~~ 163 (204)
T PRK13538 150 LWILDEPFTAIDKQ 163 (204)
T ss_pred EEEEeCCCccCCHH
Confidence 99999999998654
No 222
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.6e-12 Score=111.84 Aligned_cols=144 Identities=12% Similarity=0.129 Sum_probs=83.1
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCH
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTE 91 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~ 91 (303)
.-+++++++++|++ .+....++.++.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ....
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 34555666665532 2345556666999999999999999999999999998753 3444443322110 0000
Q ss_pred HHHHhhcccCCCCCCccc-----------------H----HHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCce
Q 022073 92 QELARVHEYNFDHPDAFD-----------------T----EKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d-----------------~----~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~ 144 (303)
........+.++.+..+. . ..+.+.++.+... . ......+|.++.+++..+++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 111111122222221111 1 1122333333221 0 11223577788888877778
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|+|++++|+.
T Consensus 169 l~~~p~llllDEPt~~LD~~ 188 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPI 188 (258)
T ss_pred HHcCCCEEEEeCCCcccCHH
Confidence 88999999999999999654
No 223
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.29 E-value=1.7e-12 Score=107.10 Aligned_cols=119 Identities=9% Similarity=0.066 Sum_probs=77.5
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCH-HHHHhhcc
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTE-QELARVHE 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~-~~~~~~~~ 99 (303)
-++++|| + +.++.+++|.|+||||||||++.|++.+++. |-+.++..+... ... ........
T Consensus 15 ~l~~vs~-----~----------i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~i~ 78 (182)
T cd03215 15 AVRDVSF-----E----------VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR-RSPRDAIRAGIA 78 (182)
T ss_pred eecceEE-----E----------EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc-cCHHHHHhCCeE
Confidence 5677777 6 8999999999999999999999999998753 445555433221 111 11122233
Q ss_pred cCCCCCC---cccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 100 YNFDHPD---AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 100 ~~f~~p~---~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.++.+. .+......+.+.... .+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~--------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSS--------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHh--------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 4444321 121112222222111 17888888887778888999999999999999654
No 224
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.8e-12 Score=113.87 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=76.0
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC-HHHHHhhcccCCCCCC--------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT-EQELARVHEYNFDHPD-------- 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~-~~~~~~~~~~~f~~p~-------- 106 (303)
.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+... .. .........+.++.|.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGD-FSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCc-cccHHHHHhheEEEEEChhhhcccchH
Confidence 344444449999999999999999999999999987652 334444322211 11 0111111111111110
Q ss_pred -----------ccc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 -----------AFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 -----------~~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+ .+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~ 170 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 011 12233344444332222 23457888888888778888999999999999999764
No 225
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.28 E-value=6.5e-11 Score=97.96 Aligned_cols=125 Identities=10% Similarity=0.089 Sum_probs=64.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV- 126 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v- 126 (303)
+.+++|+|+||||||||++.|++.+.+ .++..+........... ..+.+ +..+.+...++ .+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~---~~~~~~ 67 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGS---ENHIA-----LSEQEFFTRAG---QNLFAL 67 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhH---Hhhee-----EcHHHHHHHHH---CCchhh
Confidence 468999999999999999999998753 34444443322211111 11111 11122121111 11000
Q ss_pred --ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc---CeEEEEecChHHHHHHHHhhC
Q 022073 127 --DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 127 --~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~---d~~I~v~~~~~~~~~R~~~R~ 190 (303)
......+++...+ ...+.....+|++|-.... ..+.+.+ -.+||+++|.++..+|+..|+
T Consensus 68 ~~~~~g~~yg~~~~~---~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 68 SWHANGLYYGVGIEI---DLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHHHhCCccCCcHHH---HHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 0011112332221 1112233446667765443 2333333 257899999999999998885
No 226
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.4e-12 Score=113.83 Aligned_cols=142 Identities=12% Similarity=0.097 Sum_probs=80.4
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC-CCCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY-HNLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~-~~~~~~~ 93 (303)
++++|++++|.+. +.....+..+.++.+++|+|+||||||||++.|++.+++ .+-+.+...+.. .......
T Consensus 8 l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 8 IKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred EEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 4455555555321 244455555999999999999999999999999999875 233333322110 0000001
Q ss_pred HHhhcccCCCCCCcc---------------------c-HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF---------------------D-TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~---------------------d-~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+..+ + .+...+.++.+.... ......+|.++.+++..+.+.
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 111111111111100 0 112233344433211 112235777888887777788
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 166 ~~~p~vllLDEP~~~LD~~ 184 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPI 184 (261)
T ss_pred hcCCCEEEEeCCCccCCHH
Confidence 8999999999999999654
No 227
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=7.1e-13 Score=115.21 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=73.3
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE---------------------eCCC-CCCCCCHHHHHhhc
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV---------------------NQDS-FYHNLTEQELARVH 98 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l---------------------~~D~-~~~~~~~~~~~~~~ 98 (303)
+..+.+|.+++|.|+||||||||++.|++.+++. |.+.+ .++. ++...+..+.....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 3339999999999999999999999999987642 32333 2221 22223333322211
Q ss_pred cc----------CCCCCC--cc---cHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEecccccc
Q 022073 99 EY----------NFDHPD--AF---DTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (303)
Q Consensus 99 ~~----------~f~~p~--~~---d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~ 161 (303)
.. .++.+. .. ......+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 184 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 10 000000 00 0112333344443322 1233457888888887778888999999999999999
Q ss_pred chh
Q 022073 162 DSR 164 (303)
Q Consensus 162 d~~ 164 (303)
|+.
T Consensus 185 D~~ 187 (255)
T PRK11300 185 NPK 187 (255)
T ss_pred CHH
Confidence 654
No 228
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.28 E-value=8.8e-13 Score=114.23 Aligned_cols=121 Identities=15% Similarity=0.269 Sum_probs=78.4
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCCCC-CCC--CHHHHHhhcccCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDSFY-HNL--TEQELARVHEYNFD 103 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------~~~~l~~D~~~-~~~--~~~~~~~~~~~~f~ 103 (303)
.....+..+.++.+++|.|+||||||||++.|++.+.+. .+.++.++... ..+ +..+... +.
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~-----~~ 93 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLR-----LR 93 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHh-----cc
Confidence 334444449999999999999999999999999987642 24455555322 111 1111111 11
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+ ....+.+...++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 94 -~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 154 (251)
T PRK09544 94 -P-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN 154 (251)
T ss_pred -c-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 1 12234455566665443322 23457888888877777788999999999999999664
No 229
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.28 E-value=9.7e-13 Score=114.82 Aligned_cols=120 Identities=10% Similarity=0.094 Sum_probs=71.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----CEEEEeCCCC--------------------------CCCCCHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLVNQDSF--------------------------YHNLTEQEL 94 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----~~~~l~~D~~--------------------------~~~~~~~~~ 94 (303)
+.+|.+++|+|+||||||||++.|++.+.+. |-+.++..+. +...+..+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 9999999999999999999999999988642 3333333221 111222221
Q ss_pred HhhcccCC--------CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 95 ARVHEYNF--------DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 95 ~~~~~~~f--------~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
........ ............+.+..+...... ....+|.++.+|+..+.+.+.+++++++|+|+.++|..
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHH
Confidence 11110000 000000112334455544433222 22346778888877777778899999999999999654
No 230
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.28 E-value=9.2e-13 Score=127.50 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=92.6
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE--------------------E
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV--------------------V 78 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~--------------------~ 78 (303)
.++++|++|+|++.. +.....+..+++|..++|+|+||||||||++.|.+.+++. |- .
T Consensus 334 ~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 488899999997533 5688899999999999999999999999999999988753 22 3
Q ss_pred EEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHH---------HHHhhCCCc--c--ccCcccCCCCccCCCCcee
Q 022073 79 LVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQA--V--DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 79 ~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~---------l~~l~~~~~--v--~~p~~~~~~~~~~~~~~~~ 145 (303)
++++|.+....+..+...++ .|+ .+.+.+.+. +..+..+-. + ....+|.++.+|+..+++.
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~-----~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLG-----REG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred EEccCCccCcccHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 44444444333333333222 122 222333322 222222211 1 1234677888888778888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++|+|||++.+|+.
T Consensus 487 l~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVE 505 (585)
T ss_pred hcCCCEEEEECCccCCCHH
Confidence 8999999999999998554
No 231
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.3e-12 Score=118.30 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=112.8
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC----------------
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ---------------- 82 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~---------------- 82 (303)
+.+.|+|++|.|.+ ..+.+.+++..+++|.-+||.|+|||||||+.++|.+.+...|-+.++.
T Consensus 350 ~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCC-CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 34889999998864 4478999999999999999999999999999999999987555444444
Q ss_pred ----CCCCCCCCHHHHHhhcccCCCCCCcccHHH--------HHHHHHHhhCCCcc----ccCcccCCCCccCCCCceec
Q 022073 83 ----DSFYHNLTEQELARVHEYNFDHPDAFDTEK--------LLSSMEKLRHGQAV----DIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 83 ----D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~--------l~~~l~~l~~~~~v----~~p~~~~~~~~~~~~~~~~~ 146 (303)
|....+-+... +.-|++|.+-+.+. +.+.+..+..|-.. .--.+|.++.|++..+++.+
T Consensus 429 ~VPQd~~LFndTIl~-----NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILY-----NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred EeCCcccccchhHHH-----HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 43332222211 22344554332221 22333344333111 12346888899988888889
Q ss_pred CCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 147 NPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
++++++++|+++..+ |...|..+-+.+.. ...+++...+.|..+.
T Consensus 504 Kda~Il~~DEaTS~L--------------D~~TE~~i~~~i~~--~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 504 KDAPILLLDEATSAL--------------DSETEREILDMIMD--VMSGRTVIMIVHRLDL 548 (591)
T ss_pred cCCCeEEecCccccc--------------chhhHHHHHHHHHH--hcCCCeEEEEEecchh
Confidence 999999999999987 56666666666654 3456666666555544
No 232
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.28 E-value=3e-12 Score=111.35 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=77.7
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE--------------------eCCC-CCCCCCHHHH
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV--------------------NQDS-FYHNLTEQEL 94 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l--------------------~~D~-~~~~~~~~~~ 94 (303)
....++..+.+|.+++|.|+||||||||++.|++.+++. |-+.+ .++. ++...+..+.
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDV 95 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHH
Confidence 444444449999999999999999999999999987642 32333 3322 2222333332
Q ss_pred HhhcccC----CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 95 ARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 95 ~~~~~~~----f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
....... +..+...+.+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 2211100 0001011122344555554433222 234578888888777778888999999999999996543
No 233
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.28 E-value=3e-11 Score=99.07 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
..+|.+|.++|++||||||+++.|++.+.. .++.+++.|.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 567889999999999999999999998853 34677776654
No 234
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.28 E-value=1.1e-12 Score=118.90 Aligned_cols=133 Identities=12% Similarity=0.151 Sum_probs=84.1
Q ss_pred cccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH
Q 022073 17 HFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL 94 (303)
Q Consensus 17 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~ 94 (303)
+|++.. ++|+|| + +.+|.+++|.|+||||||||+++|++.+.+. |-+.++..+... ....+.
T Consensus 2 ~~~~~~~l~~vs~-----~----------i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~ 65 (363)
T TIGR01186 2 KTGGKKGVNDADL-----A----------IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVEL 65 (363)
T ss_pred ccCCceeEEeeEE-----E----------EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHH
Confidence 455433 589999 8 9999999999999999999999999988653 334444433221 111111
Q ss_pred ----HhhcccCCCCCCc------------------cc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceec
Q 022073 95 ----ARVHEYNFDHPDA------------------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 95 ----~~~~~~~f~~p~~------------------~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~ 146 (303)
.....+.|+.+.- +. .+...+.++.+...... ....+|.++.+|+..+.+.+
T Consensus 66 ~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~ 145 (363)
T TIGR01186 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA 145 (363)
T ss_pred HHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1111122222111 11 12333444444332211 22357888888988888888
Q ss_pred CCCcEEEEeccccccchhh
Q 022073 147 NPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~ 165 (303)
.+++++++|+|+..+|+..
T Consensus 146 ~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 146 AEPDILLMDEAFSALDPLI 164 (363)
T ss_pred cCCCEEEEeCCcccCCHHH
Confidence 9999999999999999864
No 235
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.28 E-value=2.7e-12 Score=111.03 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=72.6
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCCC-CCHHHHHhhcccCCCCCCcc-------
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYHN-LTEQELARVHEYNFDHPDAF------- 108 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~~-~~~~~~~~~~~~~f~~p~~~------- 108 (303)
..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+.... ...........+.++.+..+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~ 101 (247)
T TIGR00972 22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN 101 (247)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHH
Confidence 33999999999999999999999999999864 34455543322110 00111111111111111100
Q ss_pred -----------c----HHHHHHHHHHhhCC----Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 -----------D----TEKLLSSMEKLRHG----QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 -----------d----~~~l~~~l~~l~~~----~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. .+...+.++.+... ... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 102 IAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred HHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1 11223344444333 111 23457788888877777888999999999999999654
No 236
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.28 E-value=3e-12 Score=110.92 Aligned_cols=124 Identities=15% Similarity=0.033 Sum_probs=72.6
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-----------------------------CCCC
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-----------------------------HNLT 90 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-----------------------------~~~~ 90 (303)
++.++.+|.+++|+|+||||||||++.|++.+++. |-+.++..++. ...+
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 33339999999999999999999999999987642 33333332211 1112
Q ss_pred HHHHHhhcccCCC-CCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f~-~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+........+. .......+...+.+..+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~ 178 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 2221111000000 0000011223334444433221 223457888888887777888999999999999999654
No 237
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.28 E-value=1.3e-12 Score=107.47 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~ 123 (303)
+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ............+.++ .++.+...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q------------~l~~~gl~ 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-SLSPKELARKIAYVPQ------------ALELLGLA 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-cCCHHHHHHHHhHHHH------------HHHHcCCH
Confidence 9999999999999999999999999988653 44555543321 1122221111111111 23333222
Q ss_pred Cc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 124 QA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 124 ~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. .....+|.++.+++..+++.+.+++++++|+|++++|+.
T Consensus 89 ~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 131 (180)
T cd03214 89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131 (180)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11 123457888888887777888999999999999998543
No 238
>PRK13949 shikimate kinase; Provisional
Probab=99.28 E-value=1e-11 Score=100.98 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.-|.|+|++||||||+++.|++.+ ++.+++.|.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l---~~~~id~D~~i 36 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL---GLSFIDLDFFI 36 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCeecccHHH
Confidence 358999999999999999999998 67888888654
No 239
>PRK04040 adenylate kinase; Provisional
Probab=99.28 E-value=1.9e-11 Score=100.98 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=85.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+++|+|+|.+||||||+++.|++.++ .+..+++.++++... ....+ . . .+.+.+.+ +..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~----a~~~g-~-~-----~~~d~~r~----l~~----- 60 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEV----AKEEG-L-V-----EHRDEMRK----LPP----- 60 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHH----HHHcC-C-C-----CCHHHHhh----CCh-----
Confidence 57999999999999999999999984 246677777664211 00111 0 0 00011110 000
Q ss_pred cCcccCCCCccC-CCCceecCCCcEEEEecccccc---------chhh--hhhcCeEEEEecChHHHHHHHHhhCccccC
Q 022073 128 IPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFH---------DSRV--RELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (303)
Q Consensus 128 ~p~~~~~~~~~~-~~~~~~~~~~~vvildg~~~~~---------d~~~--~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~ 195 (303)
......++. ........+...+|+|+-+... .... .-..|.+|+++++++..++|+++.....++
T Consensus 61 ---~~~~~~~~~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~ 137 (188)
T PRK04040 61 ---EEQKELQREAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRD 137 (188)
T ss_pred ---hhhHHHHHHHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCC
Confidence 000000000 0000111234446777755321 1111 124578999999999999999852111122
Q ss_pred CCHHHHHHHHhhccccchhhccccccccccEEecCCCC--CHHHHHHHHHH
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD--NHVAIDLIVQH 244 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~--~~~~~~~~v~~ 244 (303)
..-...+..+ ......|..++.......+++|.|+ + -+.+++.+++.
T Consensus 138 ~es~e~I~~~-~~~a~~~a~~~a~~~g~~~~iI~N~-d~~~e~a~~~i~~i 186 (188)
T PRK04040 138 VETEEDIEEH-QEMNRAAAMAYAVLTGATVKIVENR-EGLLEEAAEEIVEV 186 (188)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHhcCCeEEEEECC-CCCHHHHHHHHHHH
Confidence 2222222222 2222333344444456688888776 4 44555555544
No 240
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.28 E-value=4.8e-12 Score=123.89 Aligned_cols=146 Identities=7% Similarity=0.048 Sum_probs=102.6
Q ss_pred ccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCCCCC
Q 022073 17 HFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQDSFY 86 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------~~~~l~~D~~~ 86 (303)
..+.++++|++++|++. .+.....+..+++|.+++|+|+||||||||++.|++.+++. .+.+++++.+.
T Consensus 448 ~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l 526 (659)
T TIGR00954 448 QDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526 (659)
T ss_pred CCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCC
Confidence 34568899999988643 25788899999999999999999999999999999987642 25677777766
Q ss_pred CCCCHHHHHhhcccC--CCCCCcccHHHHHHHHHHhhCCCcccc-----------CcccCCCCccCCCCceecCCCcEEE
Q 022073 87 HNLTEQELARVHEYN--FDHPDAFDTEKLLSSMEKLRHGQAVDI-----------PNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 87 ~~~~~~~~~~~~~~~--f~~p~~~d~~~l~~~l~~l~~~~~v~~-----------p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
...+..+....+... +..+ ....+.+.+.++.+.....+.. ..+|.++.+|+..+++...++++++
T Consensus 527 ~~~tv~eni~~~~~~~~~~~~-~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLGTLRDQIIYPDSSEDMKRR-GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCcCHHHHHhcCCChhhhhcc-CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 544555544332211 0011 1234445555555443322211 3578888888888788889999999
Q ss_pred Eeccccccchh
Q 022073 154 LEGILVFHDSR 164 (303)
Q Consensus 154 ldg~~~~~d~~ 164 (303)
+|||++.+|+.
T Consensus 606 LDEpts~LD~~ 616 (659)
T TIGR00954 606 LDECTSAVSVD 616 (659)
T ss_pred EeCCccCCCHH
Confidence 99999999654
No 241
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.6e-12 Score=112.95 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=83.1
Q ss_pred ccccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE------------------
Q 022073 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------------ 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l------------------ 80 (303)
++++|++++|++.. .+....++..+.+|.+++|+|+||||||||++.|++.+++. |-+.+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence 34555555554321 23455555669999999999999999999999999988642 22333
Q ss_pred --eCCC--CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 81 --NQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 81 --~~D~--~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
.++. ++...+..+...........+..-..+.....+..+..... .....+|.++.+++..+.+.+.+++++|+
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll 164 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3331 12222222222111000000000001122233333322111 12335788888888777888899999999
Q ss_pred eccccccchhh
Q 022073 155 EGILVFHDSRV 165 (303)
Q Consensus 155 dg~~~~~d~~~ 165 (303)
|+|+.++|+..
T Consensus 165 DEPt~~LD~~~ 175 (277)
T PRK13642 165 DESTSMLDPTG 175 (277)
T ss_pred eCCcccCCHHH
Confidence 99999997753
No 242
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.28 E-value=1.3e-12 Score=112.30 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=75.8
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-------------------
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ------------------- 82 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~------------------- 82 (303)
++|+|| + +.++.+++|+|+||||||||++.|++.+.+. |-+.++.
T Consensus 37 l~~vs~-----~----------i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~ 101 (236)
T cd03267 37 LKGISF-----T----------IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101 (236)
T ss_pred eeceeE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcC
Confidence 577777 6 8999999999999999999999999987642 2222221
Q ss_pred -C-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 83 -D-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 83 -D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
+ .++...+..+........+........+.+...++.+.... ......+|.++.+++..+.+.+.+++++++|+|+
T Consensus 102 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 12222333332211110000000001112233344333222 1223457778888877777788899999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+++|+.
T Consensus 182 ~~LD~~ 187 (236)
T cd03267 182 IGLDVV 187 (236)
T ss_pred CCCCHH
Confidence 999654
No 243
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.27 E-value=8.1e-12 Score=110.56 Aligned_cols=151 Identities=11% Similarity=0.178 Sum_probs=101.3
Q ss_pred ccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHH
Q 022073 17 HFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELA 95 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~ 95 (303)
...++++.|+.|.|.+.. -.+++++.++++|.++.|+|.|||||||+++.|.+.+.|+ |-..++....- .-+.+++.
T Consensus 319 ~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~-~e~ledYR 396 (546)
T COG4615 319 DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS-AEQLEDYR 396 (546)
T ss_pred cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC-CCCHHHHH
Confidence 366788899988886654 4677888889999999999999999999999999999875 34555554433 22333433
Q ss_pred hhcccCCCC---------CCc-ccHHHHHHHHHHhhCCC-------ccccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 96 RVHEYNFDH---------PDA-FDTEKLLSSMEKLRHGQ-------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 96 ~~~~~~f~~---------p~~-~d~~~l~~~l~~l~~~~-------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
.+-...|.+ |+. -..+...++|+.+.... ....-..|.++.+|+..-.+...+.+++++|+|.
T Consensus 397 ~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 397 KLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 322222221 233 33455667777665432 2233345666666654334556889999999999
Q ss_pred cccchhhhhhc
Q 022073 159 VFHDSRVRELM 169 (303)
Q Consensus 159 ~~~d~~~~~~~ 169 (303)
+-.||.++..+
T Consensus 477 ADQDPaFRR~F 487 (546)
T COG4615 477 ADQDPAFRREF 487 (546)
T ss_pred ccCChHHHHHH
Confidence 98888776544
No 244
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.27 E-value=3.1e-12 Score=108.97 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=82.4
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------C
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------D 83 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------D 83 (303)
++.|++.. ++|+|| + +.++.+++|+|+||||||||++.|++.+.+. |-+.++. .
T Consensus 29 ~~~~~~~~il~~vs~-----~----------i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 93 (224)
T cd03220 29 KGEVGEFWALKDVSF-----E----------VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG 93 (224)
T ss_pred hhhcCCeEEEeeeEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccc
Confidence 45555543 466666 6 9999999999999999999999999987653 3333322 1
Q ss_pred CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEecccccc
Q 022073 84 SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (303)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~ 161 (303)
.++...+..+........+........+.+.+.++.+..... .....+|.++.+++..+.+.+.+++++|+|+|++++
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 222334444433222111110111111223344444333222 233467888888877777788999999999999999
Q ss_pred chh
Q 022073 162 DSR 164 (303)
Q Consensus 162 d~~ 164 (303)
|+.
T Consensus 174 D~~ 176 (224)
T cd03220 174 DAA 176 (224)
T ss_pred CHH
Confidence 654
No 245
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.27 E-value=1.1e-11 Score=99.21 Aligned_cols=156 Identities=16% Similarity=0.255 Sum_probs=91.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC---CCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN---LTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~---~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
.-|.++|+.||||||+++.|++.| +..+++.|..... .+..++-. .+...|. +.-.+.+..+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L---~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR-------~~E~~vl~~l~~-- 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL---NLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFR-------RLETEVLKELLE-- 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc---CCCcccchHHHHHHHCcCHHHHHHHHhHHHHH-------HHHHHHHHHHhh--
Confidence 458899999999999999999999 7889999876522 22222211 1111111 111123333322
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc---CeEEEEecChHHHHHHHHhhCcc--ccCCCHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTV--EKGRDIA 199 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~---d~~I~v~~~~~~~~~R~~~R~~~--~~~~~~~ 199 (303)
..+.||--|=.+...++.+..+ ..+||+++|.++.++|+-..... -...+..
T Consensus 71 -----------------------~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~ 127 (172)
T COG0703 71 -----------------------EDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPR 127 (172)
T ss_pred -----------------------cCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChH
Confidence 1123333333333344433333 38999999999999998722211 1233343
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
..+.+......|.| .+.||++++.+..+...++.+++.+.
T Consensus 128 ~~l~~L~~~R~~~Y-------~e~a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 128 EELEELLEERQPLY-------REVADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred HHHHHHHHHHHHHH-------HHhCcEEecCCCCcHHHHHHHHHHHH
Confidence 44555555555666 47799999987666555556555554
No 246
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.27 E-value=8.1e-13 Score=118.74 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=78.1
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHh----hcccCCCCCC-c---
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELAR----VHEYNFDHPD-A--- 107 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~~~~~~~~~~~~~----~~~~~f~~p~-~--- 107 (303)
.++..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ++..++.. ...+.|++|. .
T Consensus 34 ~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~-~~~~~~~~~r~~~i~~v~Q~~~~~l~p 112 (330)
T PRK09473 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN-LPEKELNKLRAEQISMIFQDPMTSLNP 112 (330)
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc-CCHHHHHHHhcCCEEEEEcCchhhcCC
Confidence 33334999999999999999999999999999876 3555555543321 23222211 1223343331 0
Q ss_pred -----------------ccH----HHHHHHHHHhhCCC--cc---ccCcccCCCCccCCCCceecCCCcEEEEecccccc
Q 022073 108 -----------------FDT----EKLLSSMEKLRHGQ--AV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (303)
Q Consensus 108 -----------------~d~----~~l~~~l~~l~~~~--~v---~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~ 161 (303)
.+. +...+.|+.+.... .. ....+|.++.+|+.++.+.+.+++++|+|+|+.++
T Consensus 113 ~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~L 192 (330)
T PRK09473 113 YMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTAL 192 (330)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 011 12223333333221 11 22357888888888888888999999999999999
Q ss_pred chhh
Q 022073 162 DSRV 165 (303)
Q Consensus 162 d~~~ 165 (303)
|...
T Consensus 193 D~~~ 196 (330)
T PRK09473 193 DVTV 196 (330)
T ss_pred CHHH
Confidence 7653
No 247
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=9.3e-13 Score=118.23 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEEEEeCCCCCCCCCHHHHHh----hcccCCCCCC--------
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQDSFYHNLTEQELAR----VHEYNFDHPD-------- 106 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-----~~~~~l~~D~~~~~~~~~~~~~----~~~~~f~~p~-------- 106 (303)
.+.+|.++||.|+||||||||++.|.+.+.+ .|-+.++..+.. .++..+... ...+.|++|.
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~-~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~ 107 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ-RISEKERRNLVGAEVAMIFQDPMTSLNPCYT 107 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC-cCCHHHHHHHhCCCEEEEecCchhhcCCcCC
Confidence 3999999999999999999999999998863 233455443322 122222221 1222333321
Q ss_pred -----------------cccHHHHHHHHHHhhCCCc-----cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 -----------------AFDTEKLLSSMEKLRHGQA-----VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 -----------------~~d~~~l~~~l~~l~~~~~-----v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....+...+.|+.+..... .....+|.++.+|+..+.+.+.+++++|+|+|+.++|..
T Consensus 108 v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~ 187 (326)
T PRK11022 108 VGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187 (326)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 0011223344454444321 122357888999988888888999999999999999765
No 248
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.27 E-value=7.7e-11 Score=96.16 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=84.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCC--cccHHHHHHHHHHhhCCCc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD--AFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--~~d~~~l~~~l~~l~~~~~ 125 (303)
...|+|.|++||||||+++.|++.+ +..+++.|............. .|...+ .|. +.-.+.+..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l---~~~~vd~D~~i~~~~g~~i~~----~~~~~g~~~fr-~~e~~~l~~l~~--- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQEIEKRTGADIGW----VFDVEGEEGFR-DREEKVINELTE--- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc---CCcEEECCchHHHHhCcCHhH----HHHHhCHHHHH-HHHHHHHHHHHh---
Confidence 3469999999999999999999998 678888886432111000000 011000 000 001122222211
Q ss_pred cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh---hhhhcCeEEEEecChHHHHHHHHhhCccc--cCCCHHH
Q 022073 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRIRRDTVE--KGRDIAT 200 (303)
Q Consensus 126 v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~---~~~~~d~~I~v~~~~~~~~~R~~~R~~~~--~~~~~~~ 200 (303)
...+++.-|-....++. ..+..+.+|||++|.+++++|+..+.... .+.....
T Consensus 73 ----------------------~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~ 130 (172)
T PRK05057 73 ----------------------KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPRE 130 (172)
T ss_pred ----------------------CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHH
Confidence 11233333322222332 33456789999999999999986543221 1222334
Q ss_pred HHHHHhhccccchhhccccccccccEEecCCCCCH-HHHHHHHHHH
Q 022073 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHI 245 (303)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~v~~i 245 (303)
....+.....|.| .+.||++|++++.+. ...+.+++.+
T Consensus 131 ~~~~l~~~R~~~Y-------~~~Ad~~idt~~~s~~ei~~~i~~~l 169 (172)
T PRK05057 131 VLEALANERNPLY-------EEIADVTIRTDDQSAKVVANQIIHML 169 (172)
T ss_pred HHHHHHHHHHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHH
Confidence 4555545456666 477999998775443 3334444433
No 249
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.27 E-value=2.6e-12 Score=110.67 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=71.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-----------------------CCCCCHHHHHhhccc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-----------------------YHNLTEQELARVHEY 100 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-----------------------~~~~~~~~~~~~~~~ 100 (303)
+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+. +...+..+.......
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 103 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL 103 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHH
Confidence 9999999999999999999999999987642 3333333221 111222221111100
Q ss_pred CCCC-CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~-p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.... ..........+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 104 RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0000 0001112233444444332212 22357778888877777888999999999999999654
No 250
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=2.9e-12 Score=113.97 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=86.1
Q ss_pred cccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCC----------
Q 022073 22 HMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH---------- 87 (303)
Q Consensus 22 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~---------- 87 (303)
.++|++++|++.. .+....++..+.+|.+++|+|+||||||||++.|++.+++ .|-+.++..+...
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 4 KVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccc
Confidence 4555666554321 1345556666999999999999999999999999998865 3444443221100
Q ss_pred --C-----------CCHHHHHhhcccCCCCCCc-------------------cc----HHHHHHHHHHhhCC-Ccc--cc
Q 022073 88 --N-----------LTEQELARVHEYNFDHPDA-------------------FD----TEKLLSSMEKLRHG-QAV--DI 128 (303)
Q Consensus 88 --~-----------~~~~~~~~~~~~~f~~p~~-------------------~d----~~~l~~~l~~l~~~-~~v--~~ 128 (303)
. ...........+.|++|.. .+ .....+.+..+... ... ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 0 0111122222333443210 11 11233444444432 111 23
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
..+|.++.+++..+.+.+.+++++++|+|++++|+..
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~ 200 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 4578888888877788889999999999999997753
No 251
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.1e-12 Score=110.74 Aligned_cols=142 Identities=11% Similarity=0.067 Sum_probs=82.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|++ .+....++..+.+|.+++|+|+||||||||++.|++.+. ..|-+.++..+... ......
T Consensus 14 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 14 IQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred EEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 445666665532 135555666699999999999999999999999999874 13434443322110 000011
Q ss_pred HHhhcccCCCCCCc------------------cc----HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDA------------------FD----TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~------------------~d----~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+.. ++ .+...+.++.+.... ......+|.++.+++..+.+.
T Consensus 92 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 92 LRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred HhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 11111111111110 11 122333444433211 112345788888888777888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 172 ~~~p~lllLDEPt~~LD~~ 190 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPI 190 (260)
T ss_pred HCCCCEEEEcCCCccCCHH
Confidence 8999999999999999654
No 252
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.5e-12 Score=109.87 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=73.2
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeC--------------------CC-CCCCCCHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQ--------------------DS-FYHNLTEQE 93 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~--------------------D~-~~~~~~~~~ 93 (303)
++.++.+|.+++|+|+||||||||++.|++.+.+ .|-+.++. +. ++...+..+
T Consensus 22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 101 (250)
T PRK14247 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE 101 (250)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHH
Confidence 3333999999999999999999999999998753 33333332 21 122233333
Q ss_pred HHhhcccCCC--CCCcccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 94 LARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 94 ~~~~~~~~f~--~p~~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.......... .+..-..+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~ 180 (250)
T PRK14247 102 NVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPE 180 (250)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 2221100000 000000122334444443221 1123457778888877777788999999999999999654
No 253
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.27 E-value=1.3e-12 Score=118.64 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=84.4
Q ss_pred CcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------
Q 022073 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------- 85 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------- 85 (303)
++.|++..+ ++|| + +.++.+++|.|+||||||||++.|++.+++. |-+.++..+.
T Consensus 6 ~~~~~~~~~-~isl-----~----------i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~ 69 (354)
T TIGR02142 6 SKRLGDFSL-DADF-----T----------LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIF 69 (354)
T ss_pred EEEECCEEE-EEEE-----E----------ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccc
Confidence 456766666 7888 7 8899999999999999999999999988653 3333333221
Q ss_pred -----------------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceec
Q 022073 86 -----------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 86 -----------------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~ 146 (303)
+..++..+...++.... ..........+.++.+...... ....+|.++.+|+..+.+.+
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11222222221111000 0000112344555555443222 23457888888888888888
Q ss_pred CCCcEEEEeccccccchhh
Q 022073 147 NPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~ 165 (303)
.+++++++|+|++++|+..
T Consensus 148 ~~p~lllLDEPts~LD~~~ 166 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPR 166 (354)
T ss_pred cCCCEEEEcCCCcCCCHHH
Confidence 9999999999999998753
No 254
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.27 E-value=1.6e-12 Score=124.51 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=79.0
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCCCCCHHHHH----hhcccCCCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYHNLTEQELA----RVHEYNFDHPD 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~~~~~~~~~----~~~~~~f~~p~ 106 (303)
....++..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... ....+.. ....+.|+.+.
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~-~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH-ASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc-CCHHHHHHHhcCceEEEecCch
Confidence 34444444999999999999999999999999999874 3444444332211 1111110 01112222211
Q ss_pred -------------------------cccHHHHHHHHHHhhCCC-----ccccCcccCCCCccCCCCceecCCCcEEEEec
Q 022073 107 -------------------------AFDTEKLLSSMEKLRHGQ-----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (303)
Q Consensus 107 -------------------------~~d~~~l~~~l~~l~~~~-----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg 156 (303)
.-..+.+.+.++.+.... ......+|.++.+|+..+.+.+.+++++++||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE 182 (529)
T PRK15134 103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE 182 (529)
T ss_pred hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 001123344455544432 12334678888888888888889999999999
Q ss_pred cccccchhh
Q 022073 157 ILVFHDSRV 165 (303)
Q Consensus 157 ~~~~~d~~~ 165 (303)
|++.+|+..
T Consensus 183 Pt~~LD~~~ 191 (529)
T PRK15134 183 PTTALDVSV 191 (529)
T ss_pred CCCccCHHH
Confidence 999998753
No 255
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.4e-12 Score=110.00 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=71.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC----------------------CCCCCHHHHHhhccc
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF----------------------YHNLTEQELARVHEY 100 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~----------------------~~~~~~~~~~~~~~~ 100 (303)
.+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..+.......
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 104 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ 104 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhh
Confidence 39999999999999999999999999987642 3333333221 111222221111100
Q ss_pred CCCC-CCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDH-PDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~-p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.... ...-......+.++.+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 105 IRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred cccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0000 000011223344444433221 223457888888887777888999999999999999654
No 256
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.27 E-value=2.6e-12 Score=112.37 Aligned_cols=127 Identities=11% Similarity=0.139 Sum_probs=75.1
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCC---------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
....++..+.++.+++|+|+||||||||++.|++.+.+ .|.+.++..+... ...........+.++.+.
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF-GDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC-CchhhHhccEEEEecCchhhcCcchhH
Confidence 34444444999999999999999999999999999865 2434443322110 000000000011111110
Q ss_pred ------------ccc----HHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ------------AFD----TEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ------------~~d----~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... .+.+.+.++.+... . ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 183 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS 183 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHH
Confidence 001 12234445554432 1 1123467888888887777888999999999999999764
No 257
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=2.4e-12 Score=112.94 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=74.5
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-CCCCHHHHHhhcccCCCCCC---------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-HNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
...++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.. .............+.++.+.
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 96 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDID 96 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHH
Confidence 33344449999999999999999999999999988653 44444443221 00111111111111111110
Q ss_pred ----------cccH----HHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ----------AFDT----EKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ----------~~d~----~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+. ..+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 97 SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0011 11223333332221 1223457888888887778888999999999999999765
No 258
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.26 E-value=6e-12 Score=119.76 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=87.5
Q ss_pred hccCC-Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCC--
Q 022073 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS-- 84 (303)
Q Consensus 10 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~-- 84 (303)
++.++ ++.|++. -++|+|| + +.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+
T Consensus 5 i~~~~l~~~~~~~~~l~~is~-----~----------i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFPGVKALSGAAL-----N----------VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeCCeEEeeeeeE-----E----------EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 44444 5556543 2467777 6 999999999999999999999999998865 2333333221
Q ss_pred --------------------CCCCCCHHHHHhhcccCCCCCCcccH----HHHHHHHHHhhCCCcc--ccCcccCCCCcc
Q 022073 85 --------------------FYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (303)
Q Consensus 85 --------------------~~~~~~~~~~~~~~~~~f~~p~~~d~----~~l~~~l~~l~~~~~v--~~p~~~~~~~~~ 138 (303)
++..++..+...++...+.....++. +.+.+.+..+...... ....+|.++.++
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM 149 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHH
Confidence 11222333322211100000001111 2344556655544322 334688888898
Q ss_pred CCCCceecCCCcEEEEeccccccchhh
Q 022073 139 NVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 139 ~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+..+.+.+.+++++++|+|++++|+..
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~ 176 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTE 176 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHH
Confidence 888888889999999999999999853
No 259
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4e-12 Score=110.48 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE--------------------EEeCCCC-CCCCCHHHHHhhc
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV--------------------LVNQDSF-YHNLTEQELARVH 98 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~--------------------~l~~D~~-~~~~~~~~~~~~~ 98 (303)
++..+.+|.+++|.|+||||||||++.|++.+++. |-+ ++.++.. +..++..+....+
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhc
Confidence 33339999999999999999999999999987642 222 2333321 1222333332221
Q ss_pred cc----CCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 99 EY----NFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 99 ~~----~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.. .+......+...+.+.+..+.... ......+|.++.+++..+.+.+.+++++++|+|+.++|+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 101 RSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 10 011000111223344454443322 22334678888888877788889999999999999996653
No 260
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.26 E-value=5.7e-12 Score=105.50 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=74.4
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC--------------------CCCHHHHHhhc
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH--------------------NLTEQELARVH 98 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~--------------------~~~~~~~~~~~ 98 (303)
.++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+... ..+..+.....
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~ 98 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYD 98 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHH
Confidence 333339999999999999999999999999987653 334444432211 11111111110
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCccc--cCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v~--~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. . ..+...+.+.+..+....... ...+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 99 ~~-~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~ 161 (200)
T PRK13540 99 IH-F----SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161 (200)
T ss_pred Hh-c----CcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 00 0 001123445555544333222 2357778888877777888999999999999998654
No 261
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.25 E-value=5.2e-12 Score=109.92 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=85.9
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhc
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVH 98 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~ 98 (303)
.+++++++++|+....+....++..+.++.+++|.|+||||||||++.|++.+++ .|-+.++..+.. ...........
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~-~~~~~~~~~~i 97 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS-KLPLHTLRSRL 97 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhh-hCCHHHHhhhE
Confidence 3778888888865434577788888999999999999999999999999998764 233444332211 11111111111
Q ss_pred ccCCCCCCc--------------ccHHHHHHHHHHhhC---------CC--cc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 99 EYNFDHPDA--------------FDTEKLLSSMEKLRH---------GQ--AV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 99 ~~~f~~p~~--------------~d~~~l~~~l~~l~~---------~~--~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
.+.++.|.- .....+...+..... +- .. ....++.++.+++..+.+.+.++++
T Consensus 98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 177 (257)
T cd03288 98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177 (257)
T ss_pred EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 111221111 111112222211111 10 00 1124677777777777777899999
Q ss_pred EEEeccccccchh
Q 022073 152 ILLEGILVFHDSR 164 (303)
Q Consensus 152 vildg~~~~~d~~ 164 (303)
+++|+|+.++|+.
T Consensus 178 lllDEPt~gLD~~ 190 (257)
T cd03288 178 LIMDEATASIDMA 190 (257)
T ss_pred EEEeCCccCCCHH
Confidence 9999999999654
No 262
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.25 E-value=7e-12 Score=107.00 Aligned_cols=142 Identities=16% Similarity=0.110 Sum_probs=82.6
Q ss_pred ccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---C-CCEE-----------------E
Q 022073 23 MDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QRVV-----------------L 79 (303)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~-~~~~-----------------~ 79 (303)
+++++++|++. ..+....++..+.++.+++|+|+||||||||++.|++.++ + .|-+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 85 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence 45555555443 2344555555599999999999999999999999999886 3 2222 3
Q ss_pred EeCCC-CCCCCCHHHHHhhcccCCCC---CCcccHHHHHH-HHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEE
Q 022073 80 VNQDS-FYHNLTEQELARVHEYNFDH---PDAFDTEKLLS-SMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 80 l~~D~-~~~~~~~~~~~~~~~~~f~~---p~~~d~~~l~~-~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+.++. ++..++..+...+....... +.......... .+..+..... .....+|.++.+++..+.+.+.+++++
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il 165 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence 33332 22233443333222111100 00001111122 3333332211 123457778888877777788899999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
++|+|+.++|+.
T Consensus 166 llDEP~~gLD~~ 177 (226)
T cd03234 166 ILDEPTSGLDSF 177 (226)
T ss_pred EEeCCCcCCCHH
Confidence 999999999654
No 263
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.25 E-value=1.8e-12 Score=110.98 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=74.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------------CC-CCCCCCHHHHHhhccc-CCCC-C
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------------DS-FYHNLTEQELARVHEY-NFDH-P 105 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------------D~-~~~~~~~~~~~~~~~~-~f~~-p 105 (303)
+.+|.+++|+|+||||||||++.|++.+.+. |-+.++. +. ++...+..+....... .+.. .
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 87 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLS 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCC
Confidence 8899999999999999999999999988642 3333322 21 2222344443322110 0110 0
Q ss_pred CcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 106 DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 106 ~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 88 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 88 KSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 001122344555554433222 23457888888887777888999999999999999654
No 264
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=3.6e-12 Score=108.95 Aligned_cols=142 Identities=11% Similarity=0.192 Sum_probs=78.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
++++|++++|.+. .+.....+..+.+|.+++|.|+||||||||++.|++.+++. |.+.++..... ............
T Consensus 3 l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~ 80 (229)
T cd03254 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSLRSMIG 80 (229)
T ss_pred EEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH-HcCHHHHhhhEE
Confidence 3445555544311 12444555559999999999999999999999999988653 44444332110 001111111111
Q ss_pred cCCCCCC---------------cccHHHHHHHHHHhhC---------C--C--ccccCcccCCCCccCCCCceecCCCcE
Q 022073 100 YNFDHPD---------------AFDTEKLLSSMEKLRH---------G--Q--AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 100 ~~f~~p~---------------~~d~~~l~~~l~~l~~---------~--~--~v~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
+.++.+. ......+...+..... + . ......+|.++.+++..+.+.+.++++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1111111 0111222222221110 0 0 011245777888887777788899999
Q ss_pred EEEeccccccchh
Q 022073 152 ILLEGILVFHDSR 164 (303)
Q Consensus 152 vildg~~~~~d~~ 164 (303)
+++|+|++++|+.
T Consensus 161 lllDEP~~~LD~~ 173 (229)
T cd03254 161 LILDEATSNIDTE 173 (229)
T ss_pred EEEeCccccCCHH
Confidence 9999999999654
No 265
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5e-12 Score=109.75 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=70.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCcc---------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAF--------- 108 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~--------- 108 (303)
+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... ............+.++.+..+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV 106 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence 999999999999999999999999999864 3545554432210 011111111111111111100
Q ss_pred -----------cH----HHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 -----------DT----EKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 -----------d~----~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. ..+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 183 (253)
T PRK14267 107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183 (253)
T ss_pred HHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 01 11223333332211 1123357778888877777778999999999999998654
No 266
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.5e-12 Score=109.91 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=86.2
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHH
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQ 92 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~ 92 (303)
.++++|++++|++ .+....++..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... .....
T Consensus 19 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 19 KMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred eEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4667777776643 2456667777999999999999999999999999998853 3444444322110 00011
Q ss_pred HHHhhcccCCCCCCccc-----------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCc
Q 022073 93 ELARVHEYNFDHPDAFD-----------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPA 143 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d-----------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~ 143 (303)
.......+.++.+..+. .+.+.+.+..+.... ......+|.++.+|+..+.
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 176 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR 176 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 11111111122111110 112233344333321 1123457888888887778
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+.+++++++|+|+.++|+.
T Consensus 177 al~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14235 177 AIAVSPEVILMDEPCSALDPI 197 (267)
T ss_pred HHHcCCCEEEEeCCCcCCCHH
Confidence 888999999999999999654
No 267
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=3.9e-12 Score=111.75 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=73.3
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC-CCCHHHHHhhcccCCCCCC---------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH-NLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~--------- 106 (303)
...++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+... ............+.++.+.
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVE 97 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHH
Confidence 33334449999999999999999999999999987652 333333322110 0000011111111111110
Q ss_pred ----------cc----cHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ----------AF----DTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ----------~~----d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. ..+...+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 171 (275)
T PRK13639 98 EDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM 171 (275)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 00 1122333444443322 1123356777888877777788999999999999999765
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=5e-12 Score=120.44 Aligned_cols=139 Identities=11% Similarity=0.149 Sum_probs=87.8
Q ss_pred hccCC-Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCC
Q 022073 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDS 84 (303)
Q Consensus 10 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~~~~l~~D~ 84 (303)
++.++ ++.|++. -++|+|| + +.+|.+++|+|+||||||||++.|++.+++ .|-+.++..+
T Consensus 6 l~~~nl~~~~~~~~il~~isl-----~----------i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~ 70 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSL-----K----------VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE 70 (506)
T ss_pred EEEeeeEEEeCCeEeecceeE-----E----------EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 44444 5556543 2477777 6 999999999999999999999999998874 3444443322
Q ss_pred C----------------------CCCCCHHHHHhhcccCCCCCCccc----HHHHHHHHHHhhCCCc--cccCcccCCCC
Q 022073 85 F----------------------YHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQA--VDIPNYDFKSY 136 (303)
Q Consensus 85 ~----------------------~~~~~~~~~~~~~~~~f~~p~~~d----~~~l~~~l~~l~~~~~--v~~p~~~~~~~ 136 (303)
. +..++..+...+...... ...++ .+.+.+.+..+..... .....+|.++.
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP-GGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQ 149 (506)
T ss_pred CCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc-cCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHH
Confidence 1 112222222211110000 00011 1234556666554332 23346888899
Q ss_pred ccCCCCceecCCCcEEEEeccccccchh
Q 022073 137 KNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 137 ~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+|+..+.+.+.+++++++|||++++|+.
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 9988888888999999999999999985
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.25 E-value=2.9e-12 Score=122.15 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=77.6
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHh-hcccCCCCCC----------
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELAR-VHEYNFDHPD---------- 106 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~-~~~~~f~~p~---------- 106 (303)
..++..+.+|.+++|+|+||||||||++.|++.+.+. |.+.+...+.. ......... .-.+.++.+.
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 106 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCA-RLTPAKAHQLGIYLVPQEPLLFPNLSVKEN 106 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC-CCCHHHHHhCCEEEEeccCccCCCCcHHHH
Confidence 3344449999999999999999999999999988653 33444332211 111111100 0111111111
Q ss_pred --------cccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 --------AFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 --------~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....+.+.+.+..+..... .....+|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 107 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 107 ILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPA 174 (510)
T ss_pred hhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 0112334455555544332 233467888888888888888999999999999999985
No 270
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.25 E-value=5.6e-12 Score=108.70 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=74.3
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC----------------------CCCCCCHHHHHhh
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS----------------------FYHNLTEQELARV 97 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~----------------------~~~~~~~~~~~~~ 97 (303)
.+.++.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+ ++...+..+....
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 100 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL 100 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence 33339999999999999999999999999987542 333333321 1112233222211
Q ss_pred cccCCC--------CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 98 HEYNFD--------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 98 ~~~~f~--------~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...... .+..-+...+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~ 177 (242)
T TIGR03411 101 ALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177 (242)
T ss_pred hhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHH
Confidence 110000 00000122334445554433222 23457888888887777888999999999999999765
No 271
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6e-12 Score=108.79 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=72.6
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEE--------------------eCCCCCCCCCHHHHH
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH----DQRVVLV--------------------NQDSFYHNLTEQELA 95 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~----~~~~~~l--------------------~~D~~~~~~~~~~~~ 95 (303)
..+..+.++.+++|+|+||||||||++.|++.+. ..|-+.+ .++......+..+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni 99 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENI 99 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHh
Confidence 3333499999999999999999999999999863 1233333 333211112222221
Q ss_pred hhcccCCC--CCCcccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~f~--~p~~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+...... .+.....+.+.+.++.+.... .-....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~ 176 (246)
T PRK14269 100 SYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176 (246)
T ss_pred hhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 11100000 000011122334455444321 1122357778888877777888999999999999999654
No 272
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.25 E-value=4.9e-12 Score=110.95 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=74.5
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE-----------------EeCCCCC---CCCCHHHHHh
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL-----------------VNQDSFY---HNLTEQELAR 96 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~-----------------l~~D~~~---~~~~~~~~~~ 96 (303)
...++.++.+|.+++|+|+||||||||++.|++.+++. |-+. +.++... ......+...
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~ 102 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM 102 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhhee
Confidence 33444449999999999999999999999999987652 2222 2222110 0001111111
Q ss_pred hccc----CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEY----NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~----~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+ .+..+...+.+...+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 176 (272)
T PRK15056 103 MGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176 (272)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 0000 00001111122334455554433222 33457888888887777888999999999999999654
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=99.24 E-value=2.2e-12 Score=124.32 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=88.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------EEEEeCCCC-CCCCCH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVLVNQDSF-YHNLTE 91 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------~~~l~~D~~-~~~~~~ 91 (303)
+++++++++|.+. .+...+..+.+|.+++|.|+||||||||++.|++.+.+. | +.+++++.. ....+.
T Consensus 341 l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 341 VEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTV 417 (590)
T ss_pred EEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcH
Confidence 4567777766331 244455568999999999999999999999999988653 2 233444422 233444
Q ss_pred HHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+........+. ......+.++.+..... .....+|.++.+|+..+.+.+.+++++++|+|++++|..
T Consensus 418 ~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 418 EDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred HHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 444332211111 11233455655544322 234468888889988888888999999999999999654
No 274
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.24 E-value=5.4e-12 Score=107.54 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=73.6
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCC---CCCCCHHHH----HhhcccCCCCCCc----
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF---YHNLTEQEL----ARVHEYNFDHPDA---- 107 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~---~~~~~~~~~----~~~~~~~f~~p~~---- 107 (303)
..+..+.+|.+++|+|+||||||||++.|++.+++ .|-+.++.+.- ......... .....+.++.+..
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 105 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRV 105 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCc
Confidence 33334999999999999999999999999998865 34455542110 000111110 0111122222211
Q ss_pred --------------cc----HHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 --------------FD----TEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 --------------~d----~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+ .+...+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 106 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 183 (224)
T TIGR02324 106 SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 11 112233344443322 1223457777788877777778899999999999999654
No 275
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=4.9e-13 Score=112.92 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=91.1
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-CCCCCCCCHHHHHhhc--
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-DSFYHNLTEQELARVH-- 98 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~-D~~~~~~~~~~~~~~~-- 98 (303)
..|+|| + +++|.++|+.|+||+||||++|+|.+.+.|. |.+-+.. +.|- ..+++....
T Consensus 40 Vqdisf-----~----------IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~---~~~~~~~~~~~ 101 (325)
T COG4586 40 VQDISF-----E----------IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR---RREEYLRSIGL 101 (325)
T ss_pred hheeee-----e----------cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch---hHHHHHHHHHH
Confidence 377888 7 9999999999999999999999999988764 3333333 4443 122221111
Q ss_pred ------ccCCCCCC-----------cccHHHHHHHHH----HhhCCCccccC--cccCCCCccCCCCceecCCCcEEEEe
Q 022073 99 ------EYNFDHPD-----------AFDTEKLLSSME----KLRHGQAVDIP--NYDFKSYKNNVFPARRVNPSDVILLE 155 (303)
Q Consensus 99 ------~~~f~~p~-----------~~d~~~l~~~l~----~l~~~~~v~~p--~~~~~~~~~~~~~~~~~~~~~vvild 155 (303)
...|+.|- ....+.+.+.+. -+.....+..| ..|.++..|...++..+.+++++++|
T Consensus 102 v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLD 181 (325)
T COG4586 102 VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD 181 (325)
T ss_pred HhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 11233331 112233333333 23333334445 45666666656667778999999999
Q ss_pred ccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHH
Q 022073 156 GILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (303)
Q Consensus 156 g~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (303)
+|+.++ |+....++++.++--...++.++.-..|.+
T Consensus 182 EpTvgL--------------DV~aq~~ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 182 EPTVGL--------------DVNAQANIREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred CCccCc--------------chhHHHHHHHHHHHHHHhhCceEEEEecch
Confidence 999998 667777777776654434444433333333
No 276
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.7e-12 Score=116.51 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHH---hhcccCCCCCC-c--------
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELA---RVHEYNFDHPD-A-------- 107 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~---~~~~~~f~~p~-~-------- 107 (303)
++..+.+|.++||+|+||||||||++.|.+.+.+. |-+.++..+.. .++..+.. ....+.|++|. .
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~ 112 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL-KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVG 112 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC-cCCHHHHHHHhCCEEEEEcCchhhcCCccCHH
Confidence 33339999999999999999999999999988653 44444443322 12222211 11223333321 0
Q ss_pred ------------c----cHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 108 ------------F----DTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 108 ------------~----d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
. ..+...+.++.+.... ......+|.++.+|+.++.+.+.+++++|+|+|+..+|...
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 113 QILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 0 1122334444443321 11223678888888888888889999999999999997653
No 277
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=6.4e-12 Score=112.48 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=91.3
Q ss_pred ccccCcccccCCCC---CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC--------
Q 022073 21 FHMDGLEVRNKETG---QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN-------- 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~-------- 88 (303)
+.++|++++|.+.. .+.+..++..+.+|.+++|+|+||||||||++.|++.+.+. |-+.++.-+....
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 101 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT 101 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence 67899999886432 35788888999999999999999999999999999988653 4444443111100
Q ss_pred -------CCHHHHHhhcccCCCCCC--c-----------------cc----HHHHHHHHHHhhCCC-cc--ccCcccCCC
Q 022073 89 -------LTEQELARVHEYNFDHPD--A-----------------FD----TEKLLSSMEKLRHGQ-AV--DIPNYDFKS 135 (303)
Q Consensus 89 -------~~~~~~~~~~~~~f~~p~--~-----------------~d----~~~l~~~l~~l~~~~-~v--~~p~~~~~~ 135 (303)
...........+.|+.|. - .+ .....+.+..+.... .. ....+|.++
T Consensus 102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 181 (320)
T PRK13631 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQ 181 (320)
T ss_pred cccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHH
Confidence 001111111222222221 0 01 112223344443321 11 223578888
Q ss_pred CccCCCCceecCCCcEEEEeccccccchh
Q 022073 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 136 ~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+|+..+.+.+.+++++++|+|+.++|+.
T Consensus 182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~ 210 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDEPTAGLDPK 210 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 88887778888999999999999999765
No 278
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7.4e-12 Score=108.51 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHH
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQ 92 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~ 92 (303)
.++++|++++|.+ .+....++..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... .....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 3455566665532 1345555556999999999999999999999999997541 3444444322110 00000
Q ss_pred HHHhhcccCCCCCCccc----------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCce
Q 022073 93 ELARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d----------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~ 144 (303)
.......+.++.+..+. .+.+.+.+..+.... ......+|.++.+++..+.+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 11111111111111110 112222233322110 11223577788888777778
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|+|++++|+.
T Consensus 161 l~~~p~llllDEP~~~LD~~ 180 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPI 180 (250)
T ss_pred HhcCCCEEEEeCCCccCCHH
Confidence 88999999999999999654
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.24 E-value=5.3e-12 Score=106.28 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=80.3
Q ss_pred Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------
Q 022073 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------- 85 (303)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------- 85 (303)
++.|++. -++++|| + +.++.+++|+|+||||||||++.|++.+.+. |-+.++..+.
T Consensus 9 ~~~~~~~~~l~~is~-----~----------i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 9 ACVRGGRVLFSGLSF-----T----------LAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEECCeEEEeceEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHh
Confidence 4555443 3577777 6 9999999999999999999999999987542 4344433221
Q ss_pred -----------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEE
Q 022073 86 -----------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 86 -----------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+...+..+.......... .....+.+.++.+..... .....+|.++.+++..+.+.+.+++++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 149 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 111122221111000000 112234445555443321 122357788888877777888999999
Q ss_pred EEeccccccchh
Q 022073 153 LLEGILVFHDSR 164 (303)
Q Consensus 153 ildg~~~~~d~~ 164 (303)
++|+|++++|+.
T Consensus 150 llDEPt~~LD~~ 161 (207)
T PRK13539 150 ILDEPTAALDAA 161 (207)
T ss_pred EEeCCcccCCHH
Confidence 999999999654
No 280
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.24 E-value=6e-12 Score=107.17 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=76.2
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE----------------EEeCCC-CCCCCCHHHHHhhccc
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV----------------LVNQDS-FYHNLTEQELARVHEY 100 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~----------------~l~~D~-~~~~~~~~~~~~~~~~ 100 (303)
..++..+.++.+++|.|+||||||||++.|++.+++. |-+ ++.++. ++...+..+.......
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~ 96 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTT 96 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHH
Confidence 3333449999999999999999999999999987643 222 222222 1222333333221111
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+. .+.....+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 ~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~ 158 (223)
T TIGR03740 97 LLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158 (223)
T ss_pred HcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence 111 1233445555555443222 22357888888877777888999999999999999654
No 281
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.6e-12 Score=117.93 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=86.5
Q ss_pred ccCCCcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC-
Q 022073 11 EASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN- 88 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~- 88 (303)
+...++.|++..+ |+|| + +.++.+++|.|+||||||||++.|++.+.+. |-+.++..++...
T Consensus 3 ~~~l~k~~~~~~~-~vsl-----~----------i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 3 ELNFKQQLGDLCL-TVNL-----T----------LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE 66 (352)
T ss_pred EEEEEEEeCCEEE-EEEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc
Confidence 3333566776554 7888 7 8899999999999999999999999988653 4344443222100
Q ss_pred --CCHHHHHhhcccCCCCCCc----------------ccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCC
Q 022073 89 --LTEQELARVHEYNFDHPDA----------------FDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 89 --~~~~~~~~~~~~~f~~p~~----------------~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
...........+.|+.+.- ...+...+.++.+...... ....+|.++.+|+..+.+.+.+
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 0000011111122222111 1123344455555443222 2345788888888888888899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|+|++++|+..
T Consensus 147 p~llLLDEPts~LD~~~ 163 (352)
T PRK11144 147 PELLLMDEPLASLDLPR 163 (352)
T ss_pred CCEEEEcCCcccCCHHH
Confidence 99999999999998753
No 282
>PRK08356 hypothetical protein; Provisional
Probab=99.24 E-value=9.5e-11 Score=97.68 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=64.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCccc----HHHHHHHHHHhhCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHG 123 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d----~~~l~~~l~~l~~~ 123 (303)
.++|+|+|++||||||+|+.|++ + ++.+++..+.++.....+ ...+.|.....+. .+.+.+.-..+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~---g~~~is~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~- 76 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K---GFCRVSCSDPLIDLLTHN---VSDYSWVPEVPFKGEPTRENLIELGRYLKE- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C---CCcEEeCCCccccccccc---ccccccccHHHHhhccccccHHHHHHHHHH-
Confidence 46899999999999999999964 4 666788876553322111 1112221100000 0011111000000
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh-hhhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~-~~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
.| +..-..............+++||.-...... +.+....+|||++|.+++.+|+..|+.
T Consensus 77 ------~y--G~~~~~~~~~~~~~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 77 ------KY--GEDILIRLAVDKKRNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred ------hc--CcHHHHHHHHHHhccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence 00 0000000000011122358999984332212 233346899999999999999988864
No 283
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5e-12 Score=109.61 Aligned_cols=124 Identities=9% Similarity=0.015 Sum_probs=70.4
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCC----------------------CCCCHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFY----------------------HNLTEQ 92 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~----------------------~~~~~~ 92 (303)
.+..+.+|.+++|+|+||||||||++.|++.+. ..|-+.++..+.. ...+..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHH
Confidence 333499999999999999999999999999875 1343444332211 011221
Q ss_pred HHHhhcccCCCCCC-cccHHHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 93 ELARVHEYNFDHPD-AFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 93 ~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+...+....+.... ......+.+.++.+... . .-....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHH
Confidence 11111100000000 00011222333333221 0 1122357777888877777778999999999999999664
No 284
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.24 E-value=2.3e-12 Score=112.16 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCC-----CCCCCCHHHHH----hhcccCCCCCC--------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS-----FYHNLTEQELA----RVHEYNFDHPD-------- 106 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~-----~~~~~~~~~~~----~~~~~~f~~p~-------- 106 (303)
+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+ .. ........ ....+.++++.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 107 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY-ALSEAERRRLLRTEWGFVHQHPRDGLRMQVS 107 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-cCCHHHHHHHhhcceEEEeeCcccccCcccc
Confidence 999999999999999999999999998865 3445554433 21 11111110 01112222211
Q ss_pred -------------ccc----HHHHHHHHHHhhCCC-c--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 -------------AFD----TEKLLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 -------------~~d----~~~l~~~l~~l~~~~-~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+ .....+.++.+.... . .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 108 AGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 001 112233444444432 1 223457888888887777788999999999999999654
No 285
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.24 E-value=7.5e-12 Score=105.83 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=75.4
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------------EEeCCC-CCCCCCHHHHHhhccc
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------------LVNQDS-FYHNLTEQELARVHEY 100 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~------------------~l~~D~-~~~~~~~~~~~~~~~~ 100 (303)
++..+.++.+++|.|+||||||||++.|++.+.+. |-+ ++.++. ++...+..+.......
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 33449999999999999999999999999988642 222 333332 2222333332221100
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
........+...+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|..
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 00000001223344455554443222 22357888888887777788999999999999999654
No 286
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.4e-12 Score=107.68 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=73.0
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------------------CCCCCHHHHHhhccc
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------------YHNLTEQELARVHEY 100 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------------~~~~~~~~~~~~~~~ 100 (303)
.+.++.+|.+++|+|+||||||||++.|++.+++. |.+.++..+. +...+..+.......
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLR 98 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHH
Confidence 33339999999999999999999999999998753 3344433211 111122111111100
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
............+...++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~ 165 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 00000000112233344443333222 223577788888777778889999999999999996643
No 287
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.24 E-value=6e-12 Score=109.19 Aligned_cols=140 Identities=10% Similarity=0.116 Sum_probs=79.4
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC---------CCH-
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN---------LTE- 91 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~---------~~~- 91 (303)
++|++++|++ .+....++..+.++.+++|+|+||||||||++.|++.+.+. |-+.++..+.... ...
T Consensus 3 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 3 FSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 4445554432 12444445559999999999999999999999999988653 3344433222100 000
Q ss_pred --HHHHhhcccCCCCCCc-------------------cc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCce
Q 022073 92 --QELARVHEYNFDHPDA-------------------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 92 --~~~~~~~~~~f~~p~~-------------------~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~ 144 (303)
........+.++.+.. .. .+.+.+.++.+...... ....+|.++.+++..+.+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 0111111111111110 01 11223344444332222 223577788888777778
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|+|++++|+.
T Consensus 161 l~~~p~llllDEP~~~LD~~ 180 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPE 180 (252)
T ss_pred HHcCCCEEEEeCCcccCCHH
Confidence 88999999999999999654
No 288
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=6.3e-12 Score=108.39 Aligned_cols=127 Identities=12% Similarity=0.065 Sum_probs=74.0
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC--CCCC---HHHHHhhcccCCCCCCcc---
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY--HNLT---EQELARVHEYNFDHPDAF--- 108 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~--~~~~---~~~~~~~~~~~f~~p~~~--- 108 (303)
....+..+.++.+++|.|+||||||||++.|++.+.+. |-+.++..++. .... .........+.++.+..+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (242)
T PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL 97 (242)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCC
Confidence 33333449999999999999999999999999987643 33444433221 0000 001101111111111100
Q ss_pred --------------------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 --------------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 --------------------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
....+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 011233344444332222 22357788888877777888899999999999999664
No 289
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.24 E-value=5.9e-12 Score=108.61 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=71.9
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeCCCC----------------------CCCCCHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDSF----------------------YHNLTEQELA 95 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~-~~~~~l~~D~~----------------------~~~~~~~~~~ 95 (303)
.+..+.+|.+++|.|+||||||||++.|++.+ .+ .|-+.++..+. +...+..+..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~ 98 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFL 98 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHH
Confidence 33339999999999999999999999999984 22 34344433221 1111121111
Q ss_pred hhcc-c--CCCCCCccc----HHHHHHHHHHhhCCCc-c--ccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHE-Y--NFDHPDAFD----TEKLLSSMEKLRHGQA-V--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~-~--~f~~p~~~d----~~~l~~~l~~l~~~~~-v--~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.... . .+.....++ .+.+.+.+..+..... . ... .+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 178 (243)
T TIGR01978 99 RSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178 (243)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 1000 0 000000011 1223344444443311 1 222 38888888887778888999999999999999654
No 290
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.3e-11 Score=99.57 Aligned_cols=126 Identities=14% Similarity=0.014 Sum_probs=84.8
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----------------CEEEEeCCCCCCCCCHHHHHhhcccCCC
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----------------RVVLVNQDSFYHNLTEQELARVHEYNFD 103 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-----------------~~~~l~~D~~~~~~~~~~~~~~~~~~f~ 103 (303)
.+..+.++..+.+.|||||||||+++.+++...|. .-+++..+...+.++..++..++-..-+
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 33339999999999999999999999999987652 1233444445444444444443322222
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
-+.+...+...+.+......+.- .+-.+|.++.+|+..+.+...+++++++|+|+..+|.-.+
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHH
Confidence 23344445556666666554322 2335688888998888888899999999999998876443
No 291
>PRK13946 shikimate kinase; Provisional
Probab=99.23 E-value=8.3e-11 Score=97.10 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=86.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHH----HHHHHHhhCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL----LSSMEKLRHG 123 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l----~~~l~~l~~~ 123 (303)
+..|+++|.+||||||+++.|++.| ++.+++.|.............+ |. .+..+.+ .+.+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D~~~~~~~g~~~~e~----~~---~~ge~~~~~~e~~~l~~l--- 76 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---GLPFLDADTEIERAARMTIAEI----FA---AYGEPEFRDLERRVIARL--- 76 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeECcCHHHHHHhCCCHHHH----HH---HHCHHHHHHHHHHHHHHH---
Confidence 4579999999999999999999999 7788888853211100000000 00 0111111 1111111
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhh---hcCeEEEEecChHHHHHHHHhhCccc--cCCCH
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVE--KGRDI 198 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~---~~d~~I~v~~~~~~~~~R~~~R~~~~--~~~~~ 198 (303)
......||..|-.....+..++ ...+.||+++|.+++.+|+..|.... .+...
T Consensus 77 ----------------------~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~ 134 (184)
T PRK13946 77 ----------------------LKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADP 134 (184)
T ss_pred ----------------------HhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCCh
Confidence 1222455555544333444322 34689999999999999998775321 11222
Q ss_pred HHHHH-HHhhccccchhhccccccccccEEecCCCCCH-HHHHHHHHHHHHHh
Q 022073 199 ATVLD-QYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRTKL 249 (303)
Q Consensus 199 ~~~~~-~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~v~~i~~~l 249 (303)
..... ++.. ..|.| ..+|++|+++..+. ..++.+++.|...+
T Consensus 135 ~~~i~~~~~~-R~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 135 KETLARLMEE-RYPVY--------AEADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred HHHHHHHHHH-HHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 23333 3333 22332 34899887554333 56666777666543
No 292
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.23 E-value=8.9e-12 Score=104.42 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC--------------------CCCHHHHHhhcccCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH--------------------NLTEQELARVHEYNFD 103 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~--------------------~~~~~~~~~~~~~~f~ 103 (303)
+.++.+++|.|+||||||||++.|++.+++. |-+.+...+... ..+..+.....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~----- 97 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW----- 97 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhh-----
Confidence 9999999999999999999999999987643 334444322211 11111111110
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+ ..+.+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 98 ~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 98 HA-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cc-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 00 11233445555555443222 23357778888877777888999999999999999654
No 293
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.23 E-value=5.4e-11 Score=98.38 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=65.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH--HHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE--QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~--~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
..+|+|.|++||||||+++.|++.+ +...++.+++.+.... ..........+........+.+.+.+....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 75 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY---GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAM---- 75 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Confidence 4689999999999999999999988 6677777654421000 000000000000001111111111111100
Q ss_pred cccCcccCCCCccCCCCceecCCCcEEEEeccccccc-h-hh---hhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-S-RV---RELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 126 v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d-~-~~---~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
.........+|+||...... . .+ ...+|++||+++|.+++.+|+.+|..
T Consensus 76 -----------------~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 76 -----------------VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred -----------------HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 01123345678888532211 1 11 12478999999999999999998863
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.23 E-value=3.8e-12 Score=109.87 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=74.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------EEEEeCCCC-CCCCCHHHHHhhcccCCCCCCcccHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------VVLVNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLL 114 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------~~~l~~D~~-~~~~~~~~~~~~~~~~f~~p~~~d~~~l~ 114 (303)
+.++.+++|.|+||||||||++.|++.+.+. | +.+++++.. ....+..+........... ......
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~ 97 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYT----HPYFKT 97 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccc----cHHHHH
Confidence 7889999999999999999999999987652 2 334444422 2234444433211100100 011223
Q ss_pred HHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 115 SSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 115 ~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 344444332222 23467888888888878888999999999999999654
No 295
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=6.1e-12 Score=109.29 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=73.1
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCc---
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDA--- 107 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~--- 107 (303)
...++..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ............+.++.+..
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (254)
T PRK14273 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLM 102 (254)
T ss_pred ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccC
Confidence 3334444999999999999999999999999998864 3444444322110 00001111111111111110
Q ss_pred ---------------cc----HHHHHHHHHHhhCC------CccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 108 ---------------FD----TEKLLSSMEKLRHG------QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 108 ---------------~d----~~~l~~~l~~l~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+. .+.+.+.++.+... .......+|.++.+++..+.+.+.+++++|+|+|++++|
T Consensus 103 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 182 (254)
T PRK14273 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182 (254)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 01 11222333332211 112234577888888777778889999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 183 ~~ 184 (254)
T PRK14273 183 PI 184 (254)
T ss_pred HH
Confidence 54
No 296
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=8e-12 Score=108.29 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=71.7
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCccc-
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAFD- 109 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~d- 109 (303)
....+.++.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... ............+.++.+..+.
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 98 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPM 98 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcc
Confidence 3444444999999999999999999999999998752 2444444322110 0000011111112222211111
Q ss_pred ---------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 110 ---------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 110 ---------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
.+.+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 111222233322211 11223567777778777777788999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 179 ~~ 180 (250)
T PRK14262 179 PI 180 (250)
T ss_pred HH
Confidence 54
No 297
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=4.9e-12 Score=108.72 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=70.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC----------------------CCCCCHHHHHhhccc
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF----------------------YHNLTEQELARVHEY 100 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~----------------------~~~~~~~~~~~~~~~ 100 (303)
.+.+|.+++|+|+||||||||++.|++.+++. |-+.+...+. +...+..+.......
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 106 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF 106 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh
Confidence 39999999999999999999999999987642 3233332211 111222222211110
Q ss_pred CCCCCCcccHHHHHHHHHHhh-CCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~-~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. .... .....+.+.++.+. ... ......+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 107 ~-~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~ 171 (237)
T PRK11614 107 F-AERD-QFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171 (237)
T ss_pred c-cChh-HHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHH
Confidence 0 0000 00112223333331 111 1123357888888887777888999999999999999654
No 298
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.23 E-value=1.7e-12 Score=116.70 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=75.9
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---HhhcccCCCCCC---------
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---ARVHEYNFDHPD--------- 106 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~~~~~~~f~~p~--------- 106 (303)
.++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+.. .+...+. .....+.|++|.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv 117 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL-GMKDDEWRAVRSDIQMIFQDPLASLNPRMTI 117 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC-cCCHHHHHHHhCceEEEecCchhhcCCCCCH
Confidence 333449999999999999999999999999988652 33444332221 1111111 111122222220
Q ss_pred -------------cccH----HHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 107 -------------AFDT----EKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 107 -------------~~d~----~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
..+. +...+.++.+..... -....+|.++.+|+.++.+.+.+++++|+|+|+.++|...
T Consensus 118 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~ 196 (331)
T PRK15079 118 GEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI 196 (331)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 0111 122334444433211 1223678889999888888889999999999999997653
No 299
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.23 E-value=6.6e-12 Score=106.72 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=73.3
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC------------------------CCCCCHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------------------------YHNLTEQELA 95 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------------------------~~~~~~~~~~ 95 (303)
++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+. +...+..+..
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~ 103 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV 103 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHH
Confidence 33338999999999999999999999999987642 2233322211 1112222222
Q ss_pred hhcccCCCC-CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYNFDH-PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~f~~-p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+.. +..-..+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 175 (220)
T TIGR02982 104 QMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175 (220)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 111110100 0000012334455555443222 22357888888877777778899999999999999654
No 300
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.23 E-value=1e-11 Score=108.67 Aligned_cols=127 Identities=9% Similarity=0.104 Sum_probs=75.0
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHH---HHHhhcccCCCCC-------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQ---ELARVHEYNFDHP------- 105 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~---~~~~~~~~~f~~p------- 105 (303)
.....+..+.+|.+++|+|+||||||||++.|++.+.+. |-+.++..+.. ..... .......+.++.+
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~-~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA-KLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc-ccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 344444449999999999999999999999999987542 33333332211 01110 0001111111111
Q ss_pred ------------------CcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 106 ------------------DAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 106 ------------------~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.......+.+.+..+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 0001123344555443321 1233457888888887777888999999999999999654
No 301
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=98.04 Aligned_cols=115 Identities=26% Similarity=0.406 Sum_probs=84.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CCCEEEEeCCCCCCCCCHHHHHhhcccC--------CCCCCcccHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH-----DQRVVLVNQDSFYHNLTEQELARVHEYN--------FDHPDAFDTEKL 113 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~-----~~~~~~l~~D~~~~~~~~~~~~~~~~~~--------f~~p~~~d~~~l 113 (303)
-|.+||+.||.||||||++-.|-..+. ...+..++.|+|| ++.++-.++...+ .+.++++|...+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFY--LThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll 107 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFY--LTHEGQAELRKKNPNNALLQYRGLAGTHDLKLL 107 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEeccee--eechhHHHHHhhCCCChhhccCCCCCcccHHHH
Confidence 389999999999999999988865442 2367899999999 6665544333221 344788999999
Q ss_pred HHHHHHhhCC----CccccCcccCCCCc----cC-CCCceecCCCcEEEEeccccccch
Q 022073 114 LSSMEKLRHG----QAVDIPNYDFKSYK----NN-VFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 114 ~~~l~~l~~~----~~v~~p~~~~~~~~----~~-~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
.++|+.+-.+ ..+.+|.|+.+... |. ..++..+.+..++|+|||+.+..|
T Consensus 108 ~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P 166 (282)
T KOG2878|consen 108 VEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP 166 (282)
T ss_pred HHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence 9999887544 35789999876543 33 223344567899999999999765
No 302
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.23 E-value=4e-12 Score=106.41 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=74.2
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeCCCCCCCCCHHHHH-hhcccCCCCCCcccHHHHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDSFYHNLTEQELA-RVHEYNFDHPDAFDTEKLL 114 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~-~~~~~l~~D~~~~~~~~~~~~-~~~~~~f~~p~~~d~~~l~ 114 (303)
...+..+.+|.+++|.|+||||||||++.|++.. .+ .|-+.++..+... ....... ....+.++.+..+......
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~~ 95 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD-LPPEERARLGIFLAFQYPPEIPGVKNA 95 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc-CCHHHHhhCcEEEeecChhhccCccHH
Confidence 3333349999999999999999999999999984 33 3555665543221 2222211 1123334433322222222
Q ss_pred HHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 115 SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 115 ~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+.. ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 96 ~~l~~-------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 96 DFLRY-------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred HHHhh-------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 22211 11257888888887777888999999999999998654
No 303
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.23 E-value=2.8e-12 Score=116.78 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=87.3
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC---CCCCC
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS---FYHNL 89 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~---~~~~~ 89 (303)
...|+... ++|+|| + +.+|.+++|+|+||||||||+++|++.+.+. |-++++... -....
T Consensus 31 ~~~~g~~~~l~~vsf-----~----------i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 31 LDETGLVVGVANASL-----D----------IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred HHhhCCEEEEEeeEE-----E----------EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC
Confidence 46677655 599999 8 9999999999999999999999999988653 455565421 01111
Q ss_pred CHHHHH----hhcccCCCCCCcc----------------------cHHHHHHHHHHhhCCCc--cccCcccCCCCccCCC
Q 022073 90 TEQELA----RVHEYNFDHPDAF----------------------DTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVF 141 (303)
Q Consensus 90 ~~~~~~----~~~~~~f~~p~~~----------------------d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~ 141 (303)
...... ....+.|+++.-+ ......+.++.+..... .....+|.++.+++..
T Consensus 96 ~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~L 175 (382)
T TIGR03415 96 DAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGL 175 (382)
T ss_pred CHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 111111 1112223222111 11223334444433221 2233578888888877
Q ss_pred CceecCCCcEEEEeccccccchhhh
Q 022073 142 PARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 142 ~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
+.+.+.+++++++|+|++++|+..+
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHH
Confidence 7888899999999999999987643
No 304
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.3e-11 Score=100.86 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=84.7
Q ss_pred hccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-
Q 022073 10 IEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF- 85 (303)
Q Consensus 10 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~- 85 (303)
+++++ ++...+-++ +++|+ + ...|.+.+|.|||||||||+++.|++.+.+. |.+.+..-+.
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl-----~----------~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSL-----D----------LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEeecceeccCcce-----e----------ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence 44555 556666554 77888 7 9999999999999999999999999998754 3344333211
Q ss_pred --------------------CCCCCHHHHHhhcccCCCCCCc--ccHHHHHHHHHHhhCC--CccccCcccCCCCccCCC
Q 022073 86 --------------------YHNLTEQELARVHEYNFDHPDA--FDTEKLLSSMEKLRHG--QAVDIPNYDFKSYKNNVF 141 (303)
Q Consensus 86 --------------------~~~~~~~~~~~~~~~~f~~p~~--~d~~~l~~~l~~l~~~--~~v~~p~~~~~~~~~~~~ 141 (303)
-...+..+...++...+..... -|.....+.|...... ..-.++.+|.+..+|+..
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH
Confidence 1112233333444443322222 2333344555543322 223567788888888633
Q ss_pred Cc-----ee-cCCCcEEEEeccccccchh
Q 022073 142 PA-----RR-VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 142 ~~-----~~-~~~~~vvildg~~~~~d~~ 164 (303)
++ +. .....++++|+|++.+|..
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~ 175 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIA 175 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchH
Confidence 22 22 2344699999999998643
No 305
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.23 E-value=4.4e-12 Score=109.11 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=70.8
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC---------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD--------- 106 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--------- 106 (303)
.....+..+++|.+++|+|+||||||||++.|++.+++. |-+.++..+.. ............+.++.+.
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR-DLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh-hcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 344444449999999999999999999999999987643 33444332111 0111111111111111110
Q ss_pred ------cccHHHHHHH---------HHHhhCCC--c--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ------AFDTEKLLSS---------MEKLRHGQ--A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ------~~d~~~l~~~---------l~~l~~~~--~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+... +..+..+- . .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~ 173 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 0111111111 11111110 0 112356777777877777778899999999999999654
No 306
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=8.5e-12 Score=109.26 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=80.5
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|++ .+....++..+.++.+++|+|+||||||||++.|++.+.+ .|-+.+...+... ......
T Consensus 14 l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 14 ISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred EEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 444555555532 1244455555999999999999999999999999998641 2434443322110 011111
Q ss_pred HHhhcccCCCCCCc-----------------cc---HHHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCceecC
Q 022073 94 LARVHEYNFDHPDA-----------------FD---TEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 94 ~~~~~~~~f~~p~~-----------------~d---~~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~~~ 147 (303)
......+.++.+.- +. .+...+.++.+... . ......+|.++.+++..+.+.+.
T Consensus 92 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred HhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 11111111221110 11 12223334433221 1 11234577788888777778889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++++|+|++++|+.
T Consensus 172 ~p~lllLDEPt~gLD~~ 188 (269)
T PRK14259 172 EPEVILMDEPCSALDPI 188 (269)
T ss_pred CCCEEEEcCCCccCCHH
Confidence 99999999999999664
No 307
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=9.5e-12 Score=105.27 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=80.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-----------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ----------------- 82 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~----------------- 82 (303)
+.++|++++|++. +.....+.++.+|.+++|.|+||||||||++.|++.+.+. |-+.++.
T Consensus 12 l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 12 LAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred EEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 4445555544321 2444455559999999999999999999999999987642 2233332
Q ss_pred CC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEecccc
Q 022073 83 DS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (303)
Q Consensus 83 D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~ 159 (303)
+. ++...+..+......... .....+...+.+..+.... ......+|.++.+++..+.+.+.+++++++|+|++
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLH---GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA 166 (214)
T ss_pred CcccccCCcHHHHHHHHHHhc---CCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 21 111122222211110000 0011122334444443322 22334578888888777777889999999999999
Q ss_pred ccchh
Q 022073 160 FHDSR 164 (303)
Q Consensus 160 ~~d~~ 164 (303)
.+|+.
T Consensus 167 ~LD~~ 171 (214)
T PRK13543 167 NLDLE 171 (214)
T ss_pred cCCHH
Confidence 98654
No 308
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=1.4e-11 Score=99.37 Aligned_cols=136 Identities=19% Similarity=0.240 Sum_probs=99.2
Q ss_pred cCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC
Q 022073 12 ASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN 88 (303)
Q Consensus 12 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~ 88 (303)
..+ +|.|++|+. .++|| + +..|.+-.|.||||+||||+...|.+.-+|. +-+++..+.-...
T Consensus 8 ~~~vsVsF~GF~Aln~ls~-----~----------v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~ 72 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSF-----S----------VDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK 72 (249)
T ss_pred EeceEEEEcceeeeeeeEE-----E----------ecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc
Confidence 344 899999996 99999 8 9999999999999999999999999988775 6677777444444
Q ss_pred CCHHHHHhhc-ccCCCCCCccc------------------------------HHHHHHHHHHhhCCCcc--ccCcccCCC
Q 022073 89 LTEQELARVH-EYNFDHPDAFD------------------------------TEKLLSSMEKLRHGQAV--DIPNYDFKS 135 (303)
Q Consensus 89 ~~~~~~~~~~-~~~f~~p~~~d------------------------------~~~l~~~l~~l~~~~~v--~~p~~~~~~ 135 (303)
++..+++..+ .--|+.|.-|. .++..+.|..+..+... ....+|+++
T Consensus 73 ~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGq 152 (249)
T COG4674 73 LPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQ 152 (249)
T ss_pred CCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccch
Confidence 5555554432 12344443221 23455566655554433 334679999
Q ss_pred CccCCCCceecCCCcEEEEeccccccc
Q 022073 136 YKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 136 ~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
++++.+....+++++++++|+|.+++.
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMT 179 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMT 179 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCc
Confidence 999888888889999999999999973
No 309
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.5e-11 Score=107.06 Aligned_cols=142 Identities=12% Similarity=0.143 Sum_probs=80.7
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|++ .+.+...+..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ......
T Consensus 13 l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 13 YQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred EEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 445555555532 1345555555999999999999999999999999998752 3444444322210 001111
Q ss_pred HHhhcccCCCCCCcc------------------cH----HHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF------------------DT----EKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~------------------d~----~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+..+ +. ..+.+.++.+.... ......+|.++.+++..+.+.
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 111111111111100 11 11222333332211 112235777888887777778
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 171 ~~~p~llllDEPt~~LD~~ 189 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDPV 189 (259)
T ss_pred hcCCCEEEEcCCcccCCHH
Confidence 8999999999999999654
No 310
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=9.6e-12 Score=106.70 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=70.6
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC----------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD---------- 106 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~---------- 106 (303)
...++..+.+|.+++|+|+||||||||++.|++.+++. |-+.++...... ...........+.++++.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~tv~enl 96 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRD-YTLASLRRQIGLVSQDVFLFNDTVAENI 96 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhh-CCHHHHHhhEEEeCCCCeeccccHHHHh
Confidence 33344449999999999999999999999999998642 334443322110 111111111111111111
Q ss_pred -----cccHHHHH---------HHHHHhhCC--Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 -----AFDTEKLL---------SSMEKLRHG--QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 -----~~d~~~l~---------~~l~~l~~~--~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+. +.+..+..+ ... ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 172 (234)
T cd03251 97 AYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172 (234)
T ss_pred hccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 01111111 222222111 111 22356777777777777788999999999999999554
No 311
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.9e-11 Score=102.17 Aligned_cols=142 Identities=14% Similarity=0.071 Sum_probs=91.5
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
+.++|++++|.+.. .++.++-++..+.-++|.|+||||||||++.+++..++. +.+.+-...|-+.-+..++.+...
T Consensus 32 i~l~~v~v~r~gk~--iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 32 IELKNVSVRRNGKK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred EEecceEEEECCEe--eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 67788888775543 677777779999999999999999999999999988652 223333333332222122211000
Q ss_pred c----------------------CCC-------CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCC
Q 022073 100 Y----------------------NFD-------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 100 ~----------------------~f~-------~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
+ .|. ....-+.+.....+..+...... .+..+|.++.+++.++++.+..
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 0 111 11222334444555555444333 3445677888888888899999
Q ss_pred CcEEEEeccccccchh
Q 022073 149 SDVILLEGILVFHDSR 164 (303)
Q Consensus 149 ~~vvildg~~~~~d~~ 164 (303)
++++|+|+|+.++|..
T Consensus 190 P~LLiLDEP~~GLDl~ 205 (257)
T COG1119 190 PELLILDEPAQGLDLI 205 (257)
T ss_pred CCEEEecCccccCChH
Confidence 9999999999999643
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.22 E-value=8.5e-12 Score=118.49 Aligned_cols=123 Identities=9% Similarity=0.051 Sum_probs=77.3
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCC-------------c
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPD-------------A 107 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~-------------~ 107 (303)
+.++.+|.+++|+|+||||||||++.|++.+.+. |-+.+...... ..........-.+.++.+. .
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 101 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHIT-RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRT 101 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccc-cCCHHHHHHHhceeccCcchhhcccchhhcccc
Confidence 3339999999999999999999999999988653 44444332221 1111111111111121110 0
Q ss_pred ---------ccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 108 ---------FDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 108 ---------~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.+.+.+.+.+..+..... .....+|.++.+|+..+.+.+.+++++++|||++++|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 102 TAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred HHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 012234445555544332 2345688888999888888889999999999999999853
No 313
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.22 E-value=6.1e-12 Score=96.48 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=67.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCC--cccHHHHHHHHHHhhCCCccc
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD--AFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~--~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+|+|+|++||||||+|+.|++.+ ++.+++.|+++....... . ..+.+. ..+.+.+...+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~d~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~----- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISMDDLIREPGWIE---R---DDDEREYIDADIDLLDDILEQLQN----- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEEHHHHCCGTHCH---G---CTTCCHHHHHHHHHHHHHHHHHHE-----
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEecceEEeccccc---c---CcchhhHHHHHHHHHHHHHHhhhc-----
Confidence 68999999999999999999998 788889988422111110 0 000010 1112223333332211
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccchh-hhhhcCeEEEEecChHHHHHHHHhhCccccCC
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~-~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~ 196 (303)
......+|+||.+. .... .....+..||++++.+.+..|+++|....+++
T Consensus 67 ------------------~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r 117 (121)
T PF13207_consen 67 ------------------KPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGR 117 (121)
T ss_dssp ------------------TTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEES
T ss_pred ------------------cCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCC
Confidence 24556789999544 1111 23345689999999997777777775444444
No 314
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.22 E-value=1e-11 Score=103.78 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=70.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC--------------------CCCCHHHHHhhcccCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY--------------------HNLTEQELARVHEYNFD 103 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~--------------------~~~~~~~~~~~~~~~f~ 103 (303)
+.++.+++|+|+||||||||++.|++.+++. |-+.++..+.. ...+..+..........
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence 9999999999999999999999999987643 33333332211 11222221111100000
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.....+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++++|..
T Consensus 103 ----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 161 (198)
T TIGR01189 103 ----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA 161 (198)
T ss_pred ----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 0112334444444332212 22357778888877777788999999999999998653
No 315
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.1e-11 Score=111.46 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=90.9
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEE-------------
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV------------- 80 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l------------- 80 (303)
-++++|++++|.+...+.+..++..+.+|.+++|+|++|||||||++.|.+.... .|-+.+
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 4678999999976555688999999999999999999999999999999987642 233333
Q ss_pred ---------eCCCCCCCCCHHHHHhhcccCCCCCCcccHHH----HHHHHHHhhCCC----cc--ccCcccCCCCccCCC
Q 022073 81 ---------NQDSFYHNLTEQELARVHEYNFDHPDAFDTEK----LLSSMEKLRHGQ----AV--DIPNYDFKSYKNNVF 141 (303)
Q Consensus 81 ---------~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~----l~~~l~~l~~~~----~v--~~p~~~~~~~~~~~~ 141 (303)
+++.+....+..+...++.. +. ...+.+. ....++...... .+ ....+|.++.+|+..
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~-~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPR-NN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHH-hc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 33332222232222221110 00 0001111 223333332211 11 223577888888877
Q ss_pred CceecCCCcEEEEeccccccchh
Q 022073 142 PARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 142 ~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+++.+.+++++++|+|++++|+.
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~ 259 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPI 259 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHH
Confidence 78888999999999999998654
No 316
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=9.5e-12 Score=107.90 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=70.1
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCcc------
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAF------ 108 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~------ 108 (303)
+..+.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+... ............+.++++..+
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 103 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYD 103 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHH
Confidence 333999999999999999999999999998653 2444444322210 000001111111111111100
Q ss_pred ------------c----HHHHHHHHHHhhCC------CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 ------------D----TEKLLSSMEKLRHG------QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 ------------d----~~~l~~~l~~l~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. .....+.++.+... .......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 181 (251)
T PRK14270 104 NVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181 (251)
T ss_pred HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 11122333333211 11123457777778877777778899999999999999654
No 317
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4.6e-12 Score=123.34 Aligned_cols=145 Identities=8% Similarity=0.093 Sum_probs=85.3
Q ss_pred ccccCcccccCCC--CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---------CCC
Q 022073 21 FHMDGLEVRNKET--GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF---------YHN 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~---------~~~ 88 (303)
++++|++++|... ..+....++..+.+|.++||+|+||||||||+++|++.+.+. |.+.+....+ ...
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~ 92 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence 3445555555321 123455555559999999999999999999999999998653 3333322100 001
Q ss_pred CCHHHHHh----hcccCCCCCC---------------------ccc----HHHHHHHHHHhhCCC-----ccccCcccCC
Q 022073 89 LTEQELAR----VHEYNFDHPD---------------------AFD----TEKLLSSMEKLRHGQ-----AVDIPNYDFK 134 (303)
Q Consensus 89 ~~~~~~~~----~~~~~f~~p~---------------------~~d----~~~l~~~l~~l~~~~-----~v~~p~~~~~ 134 (303)
....+... ...+.|+.|. ..+ .+.+.+.+..+.... ......+|.+
T Consensus 93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgG 172 (623)
T PRK10261 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGG 172 (623)
T ss_pred CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHH
Confidence 11111110 1122233220 001 122334455544421 1223467888
Q ss_pred CCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 135 ~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+.+|+.++.+.+.+++++|+|||++.+|+..
T Consensus 173 q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~ 203 (623)
T PRK10261 173 MRQRVMIAMALSCRPAVLIADEPTTALDVTI 203 (623)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccCHHH
Confidence 8899888888889999999999999998753
No 318
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.21 E-value=3.5e-12 Score=111.74 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---------CCEEEEeCCCC---------------------CCCCCHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------QRVVLVNQDSF---------------------YHNLTEQEL 94 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---------~~~~~l~~D~~---------------------~~~~~~~~~ 94 (303)
+.+|.+++|+|+||||||||++.|++.+++ .|-+.++..+. +...+..+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 103 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI 103 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence 999999999999999999999999998865 34444433221 111222222
Q ss_pred HhhcccCCCC----CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceec---------CCCcEEEEecccc
Q 022073 95 ARVHEYNFDH----PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV---------NPSDVILLEGILV 159 (303)
Q Consensus 95 ~~~~~~~f~~----p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~---------~~~~vvildg~~~ 159 (303)
.....+.... ....+.+...+.++.+...... ....+|.++.+++..+.+.+ .+++++++|+|++
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~ 183 (272)
T PRK13547 104 VLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183 (272)
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccc
Confidence 1111100000 0000112334445444333222 22356777777776666666 4899999999999
Q ss_pred ccchhh
Q 022073 160 FHDSRV 165 (303)
Q Consensus 160 ~~d~~~ 165 (303)
++|+..
T Consensus 184 ~LD~~~ 189 (272)
T PRK13547 184 ALDLAH 189 (272)
T ss_pred cCCHHH
Confidence 996643
No 319
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=8.2e-12 Score=107.22 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=73.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcccCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHEYNFDH 104 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~~~f~~ 104 (303)
+.++.+++|.|+||||||||++.|++.+++. | +.++.++. ++...+..+...........
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 9999999999999999999999999987653 2 23333332 22223333322221101000
Q ss_pred CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 105 PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 105 p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 102 DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred CHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 0000112233444444433222 22357778888877777888999999999999999654
No 320
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=9.2e-12 Score=108.84 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=75.7
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE--------------------eCCC-CCCCCCHHHHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV--------------------NQDS-FYHNLTEQELA 95 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l--------------------~~D~-~~~~~~~~~~~ 95 (303)
...++..+.+|.+++|+|+||||||||++.|++.+++. |.+.+ .++. ++...+..+..
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~ 102 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV 102 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHH
Confidence 33344449999999999999999999999999988642 32333 2222 11222332322
Q ss_pred hhcccC----CCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 96 RVHEYN----FDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 96 ~~~~~~----f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...... +......+.+.+.+.++.+..... -....+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 103 ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 211100 000000111233444554433221 233457888888887778888999999999999999654
No 321
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=9.6e-12 Score=108.29 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=72.2
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCc------
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDA------ 107 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~------ 107 (303)
++..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ............+.++.+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI 102 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcH
Confidence 3334999999999999999999999999998753 4545554322110 00011111111111111110
Q ss_pred -------------ccH----HHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 -------------FDT----EKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 -------------~d~----~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... +.+.+.++.+... . ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 182 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 011 1222333333221 1 1123457788888887777888999999999999999654
No 322
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.3e-11 Score=108.91 Aligned_cols=141 Identities=10% Similarity=-0.030 Sum_probs=85.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCC---------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSF--------- 85 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~--------- 85 (303)
+++++++++|++ .+....++..+.+|.+++|+|+||||||||++.|++.+++ .|-+.++..+.
T Consensus 40 l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~ 117 (285)
T PRK14254 40 IEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA 117 (285)
T ss_pred EEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence 566777777743 2466677777999999999999999999999999998752 34333332211
Q ss_pred -------------CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceec
Q 022073 86 -------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 86 -------------~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~ 146 (303)
....+..+...........+. ...+.+.+.+..+.... ......+|.++.+++..+.+.+
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 100122221111100000000 01122334444443211 1123467888888887778888
Q ss_pred CCCcEEEEeccccccchh
Q 022073 147 NPSDVILLEGILVFHDSR 164 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~ 164 (303)
.+++++++|+|++++|+.
T Consensus 197 ~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 197 PDPEVILMDEPASALDPV 214 (285)
T ss_pred cCCCEEEEeCCCCCCCHH
Confidence 999999999999999664
No 323
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.20 E-value=1.1e-11 Score=103.25 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=72.3
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-----------------CCCCHHHHHhhcccCC
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-----------------HNLTEQELARVHEYNF 102 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-----------------~~~~~~~~~~~~~~~f 102 (303)
.+..+.++.+++|.|+||||||||++.|++.+++. |-+.++..+.. ...+..+........+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 44559999999999999999999999999987643 33444332211 1111111111100000
Q ss_pred CCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 103 DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 103 ~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
. ..+.....+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 99 ~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 99 N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE 157 (195)
T ss_pred c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 112233334443332212 23457778888877777778999999999999998654
No 324
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.2e-11 Score=105.72 Aligned_cols=142 Identities=12% Similarity=0.084 Sum_probs=79.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CCEEEEeCCCC---------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QRVVLVNQDSF--------- 85 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~----~~~~~l~~D~~--------- 85 (303)
++++|++++|++ .+.....+..+.+|.+++|+|+||||||||++.|++.+. + .|-+.++..+.
T Consensus 5 l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 5 VKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 344555554432 124444455599999999999999999999999999874 2 24344333211
Q ss_pred --------------CCCCCHHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCce
Q 022073 86 --------------YHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 86 --------------~~~~~~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~ 144 (303)
+...+..+...........+. ........+.++.+.... ......+|.++.+++..+.+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 162 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIART 162 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHH
Confidence 111222221111100000000 000112333344443221 11233577788888777777
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|+|+.++|+.
T Consensus 163 l~~~p~llllDEP~~gLD~~ 182 (252)
T PRK14256 163 IAVKPEVILMDEPASALDPI 182 (252)
T ss_pred HhcCCCEEEEcCCcccCCHH
Confidence 78899999999999998654
No 325
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.20 E-value=1.1e-11 Score=105.75 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=83.2
Q ss_pred ccccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhc
Q 022073 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVH 98 (303)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~ 98 (303)
+++++++++|++.. .+.....+..+.+|.+++|+|+||||||||++.|++.+++. |-+.+....... ..........
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~~i 90 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ-YEHKYLHSKV 90 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHH-cCHHHHHhhE
Confidence 56677777775432 24666677779999999999999999999999999988642 334443321110 0000000000
Q ss_pred ccCCCCCC---------------cccHHH---------HHHHHHHhhCC--Ccc--ccCcccCCCCccCCCCceecCCCc
Q 022073 99 EYNFDHPD---------------AFDTEK---------LLSSMEKLRHG--QAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 99 ~~~f~~p~---------------~~d~~~---------l~~~l~~l~~~--~~v--~~p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
.+.++.+. ...... +.+.+..+..+ ... ....+|.++.+++..+.+.+.+++
T Consensus 91 ~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (226)
T cd03248 91 SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170 (226)
T ss_pred EEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 11111100 001111 12333333211 111 234567788888777777889999
Q ss_pred EEEEeccccccchh
Q 022073 151 VILLEGILVFHDSR 164 (303)
Q Consensus 151 vvildg~~~~~d~~ 164 (303)
++++|+|+.++|+.
T Consensus 171 llllDEPt~~LD~~ 184 (226)
T cd03248 171 VLILDEATSALDAE 184 (226)
T ss_pred EEEEeCCcccCCHH
Confidence 99999999999654
No 326
>PRK00625 shikimate kinase; Provisional
Probab=99.20 E-value=8e-11 Score=95.85 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=30.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.|.|+|.+||||||+++.|++.+ +..+++.|...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEhhHHH
Confidence 58999999999999999999998 68899998754
No 327
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=9.8e-12 Score=108.99 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=82.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~-~~~~~~ 93 (303)
+.+++++++|++ .+.....+.++.+|.+++|+|+||||||||++.|++.+. ..|-+.++..+... ......
T Consensus 25 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 25 FDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 556777776643 235666777799999999999999999999999999875 22434443322110 000111
Q ss_pred HHhhcccCCCCCCcc------------------cH----HHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF------------------DT----EKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~------------------d~----~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++++..+ +. ..+.+.+..+... . ......+|.++.+++..+.+.
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 111111112211110 11 1112222222110 0 112235777888887777788
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 183 ~~~p~lllLDEPt~~LD~~ 201 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPI 201 (271)
T ss_pred HcCCCEEEEeCCCCcCCHH
Confidence 8999999999999999654
No 328
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=9.9e-12 Score=118.58 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=87.7
Q ss_pred hhccCC-Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCC-
Q 022073 9 MIEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~- 84 (303)
|++.++ ++.|++.. ++|+|| + +.+|.+++|+|+||||||||++.|++.+.+ .|-+.+...+
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~-----~----------i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNL-----T----------VYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeE-----E----------EcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEEC
Confidence 344555 66665543 577777 7 999999999999999999999999998864 2333333221
Q ss_pred ---------------------CCCCCCHHHHHhhcccC----CCCCCccc----HHHHHHHHHHhhCCCcc--ccCcccC
Q 022073 85 ---------------------FYHNLTEQELARVHEYN----FDHPDAFD----TEKLLSSMEKLRHGQAV--DIPNYDF 133 (303)
Q Consensus 85 ---------------------~~~~~~~~~~~~~~~~~----f~~p~~~d----~~~l~~~l~~l~~~~~v--~~p~~~~ 133 (303)
++..++..+....+... +..+ ..+ .+.+.+.+..+...... ....+|.
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVN-IIDWREMRVRAAMMLLRVGLKVDLDEKVANLSI 148 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccccccc-ccCHHHHHHHHHHHHHHcCCCCCcccchhhCCH
Confidence 11222222222111100 0000 011 12344455555443322 3346888
Q ss_pred CCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 149 G~~qrv~ia~al~~~p~lllLDEPt~~LD~~ 179 (510)
T PRK09700 149 SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 8889888888888999999999999999985
No 329
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.8e-11 Score=106.19 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------CEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCccc-
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAFD- 109 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~d- 109 (303)
....+..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+... ............+.++.+..+.
T Consensus 20 l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (251)
T PRK14249 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK 99 (251)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC
Confidence 33344449999999999999999999999999988753 455554432210 0001111111111121111100
Q ss_pred ---------------------HHHHHHHHHHhhCC------CccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 110 ---------------------TEKLLSSMEKLRHG------QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 110 ---------------------~~~l~~~l~~l~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
.+.+.+.+..+... ..-....+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 179 (251)
T PRK14249 100 SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179 (251)
T ss_pred cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11122222222211 011233577778888777777789999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 180 ~~ 181 (251)
T PRK14249 180 PV 181 (251)
T ss_pred HH
Confidence 54
No 330
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.5e-11 Score=105.61 Aligned_cols=126 Identities=12% Similarity=0.140 Sum_probs=70.1
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc---------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDA--------- 107 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~--------- 107 (303)
...++..+.+|.+++|+|+||||||||++.|++.+++. |.+.++..+.-. ...........+.++++.-
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~tv~~nl 95 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE-VTLDSLRRAIGVVPQDTVLFNDTIGYNI 95 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhh-CCHHHHHhhEEEECCCChhhcchHHHHH
Confidence 33444449999999999999999999999999988642 334333211100 0111111111111111110
Q ss_pred ------ccHHHHHH---------HHHHhhCC--Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ------FDTEKLLS---------SMEKLRHG--QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ------~d~~~l~~---------~l~~l~~~--~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.....+.. .+..+..+ ... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred hhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11111111 11111111 001 12356777778877777888999999999999999654
No 331
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.20 E-value=5.4e-12 Score=120.65 Aligned_cols=121 Identities=9% Similarity=0.121 Sum_probs=72.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeC-----------------------CCCC------CCCCHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQ-----------------------DSFY------HNLTEQ 92 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~-~~~~~l~~-----------------------D~~~------~~~~~~ 92 (303)
+.+|.+++|+|+||||||||++.|++.+ .+ .|-+.+.. .+.. ......
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 102 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDK 102 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHH
Confidence 9999999999999999999999999986 33 34444431 0000 000000
Q ss_pred ---HHHhhcccCCCC-CCc------------------cc----HHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCce
Q 022073 93 ---ELARVHEYNFDH-PDA------------------FD----TEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 93 ---~~~~~~~~~f~~-p~~------------------~d----~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~ 144 (303)
.......+.|+. +.. +. .+.+.+.+..+..... -....+|.++.+|+..+.+
T Consensus 103 ~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~a 182 (520)
T TIGR03269 103 LRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQ 182 (520)
T ss_pred HHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHH
Confidence 011111222221 100 11 1123334444433222 2334678888888888888
Q ss_pred ecCCCcEEEEeccccccchhh
Q 022073 145 RVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~~ 165 (303)
.+.+++++++|||++.+|+..
T Consensus 183 l~~~p~lllLDEPt~~LD~~~ 203 (520)
T TIGR03269 183 LAKEPFLFLADEPTGTLDPQT 203 (520)
T ss_pred HhcCCCEEEeeCCcccCCHHH
Confidence 889999999999999998753
No 332
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.20 E-value=8.9e-11 Score=96.88 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHH--Hh-hcccCCCCCCcccHHHHHHHHHHhhC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL--AR-VHEYNFDHPDAFDTEKLLSSMEKLRH 122 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~--~~-~~~~~f~~p~~~d~~~l~~~l~~l~~ 122 (303)
.++.+|.|+||+|||||||++.|.+.++ ++ ..+.. + .|.... +. -..|.| ...+.+. ..+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~--~~-~~~v~-~---TTR~~r~gE~~G~dY~f-----vs~~~F~---~~i~~ 66 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP--DF-LFSIS-C---TTRAPRPGDEEGKTYFF-----LTIEEFK---KGIAD 66 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC--cc-ccccC-c---cCCCCCCCCCCCceeEe-----CCHHHHH---HHHHc
Confidence 3678999999999999999999998763 21 11111 0 111000 00 111222 2223332 23334
Q ss_pred CCccccCcc---cCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc-C--eEEEEecC-hHHHHHHHHhhCccccC
Q 022073 123 GQAVDIPNY---DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM-N--MKIFVDTD-ADVRLARRIRRDTVEKG 195 (303)
Q Consensus 123 ~~~v~~p~~---~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~-d--~~I~v~~~-~~~~~~R~~~R~~~~~~ 195 (303)
+..+.+..| .+++.... ....+....++|+|--..+. ..+...+ + +.|||.+| .+.+.+|+.+|+....
T Consensus 67 ~~f~e~~~~~g~~YGt~~~~--i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~- 142 (186)
T PRK14737 67 GEFLEWAEVHDNYYGTPKAF--IEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSE- 142 (186)
T ss_pred CCeEEEEEECCeeecCcHHH--HHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCH-
Confidence 444433332 22333321 11224566788888644443 2334333 3 68999986 5777778877753221
Q ss_pred CCHHHHHH-HHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHH
Q 022073 196 RDIATVLD-QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (303)
Q Consensus 196 ~~~~~~~~-~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i 245 (303)
..+...+. +..+.. ....+|++|.|+ +.+.+.+++.+.|
T Consensus 143 e~i~~Rl~~~~~e~~----------~~~~~D~vI~N~-dle~a~~ql~~ii 182 (186)
T PRK14737 143 ESIEKRIENGIIELD----------EANEFDYKIIND-DLEDAIADLEAII 182 (186)
T ss_pred HHHHHHHHHHHHHHh----------hhccCCEEEECc-CHHHHHHHHHHHH
Confidence 12223222 222211 246799999887 5444444444433
No 333
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.6e-11 Score=107.36 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=82.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|++ .+.....+.++.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+.-. ......
T Consensus 21 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 21 LSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 455666666632 2456666666999999999999999999999999998752 3434443322210 000001
Q ss_pred HHhhcccCCCCCC------------------cccH----HHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPD------------------AFDT----EKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~------------------~~d~----~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+. ..+. ..+.+.+..+.... ......+|.++.+++..+.+.
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1111111111111 0111 11222333332211 112345777888887777778
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 179 ~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14237 179 AVKPDILLMDEPASALDPI 197 (267)
T ss_pred hcCCCEEEEeCCcccCCHH
Confidence 8999999999999999654
No 334
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.3e-11 Score=108.11 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=83.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|++ .+.....+..+.+|.+++|.|+||||||||++.|++.+. ..|-+.+...+... ......
T Consensus 22 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 22 LEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred EEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 667888887753 346777777799999999999999999999999999753 23444443322110 000001
Q ss_pred HHhhcccCCCCCCcc----------------------cHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF----------------------DTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~----------------------d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+..+ ..+.+.+.+..+.... ......+|.++.+++..+.+.
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 111111111111111 0111222333222210 112345778888887777778
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 180 ~~~p~lllLDEPt~~LD~~ 198 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPI 198 (268)
T ss_pred hCCCCEEEEcCCCcccCHH
Confidence 8999999999999999654
No 335
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4e-12 Score=114.47 Aligned_cols=120 Identities=10% Similarity=0.139 Sum_probs=74.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-----CCEEEEeCCCCCCCCCHHHHHh----hcccCCCCCCc--------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQDSFYHNLTEQELAR----VHEYNFDHPDA-------- 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-----~~~~~l~~D~~~~~~~~~~~~~----~~~~~f~~p~~-------- 107 (303)
+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+.. .+...+... ...+.|++|..
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv 108 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL-RLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC-cCCHHHHHHHhCCCEEEEecCcchhcCccccH
Confidence 999999999999999999999999998752 233444332221 112221111 11222332210
Q ss_pred ----------------------ccHHHHHHHHHHhhCCCc-----cccCcccCCCCccCCCCceecCCCcEEEEeccccc
Q 022073 108 ----------------------FDTEKLLSSMEKLRHGQA-----VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (303)
Q Consensus 108 ----------------------~d~~~l~~~l~~l~~~~~-----v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~ 160 (303)
...+...+.|+.+..... -....+|.++.+|+..+.+.+.+++++|+|+|+.+
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 188 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNA 188 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 011233344555444321 12236788999998888888899999999999999
Q ss_pred cchhh
Q 022073 161 HDSRV 165 (303)
Q Consensus 161 ~d~~~ 165 (303)
+|+..
T Consensus 189 LD~~~ 193 (330)
T PRK15093 189 MEPTT 193 (330)
T ss_pred CCHHH
Confidence 97643
No 336
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.7e-11 Score=106.18 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCccc--------
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD-------- 109 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d-------- 109 (303)
.+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+...............+.++.+..+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~ 104 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVA 104 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHH
Confidence 3999999999999999999999999998764 24344433211100011111111111121111110
Q ss_pred --------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 110 --------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 110 --------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+...+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 179 (249)
T PRK14253 105 YGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179 (249)
T ss_pred hHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 111122232222111 1122356777778877777788899999999999999654
No 337
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.9e-11 Score=105.98 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHHHHhhcccCCCCCCcc---------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQELARVHEYNFDHPDAF--------- 108 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~~~~~~~~~f~~p~~~--------- 108 (303)
+.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+... ............+.++++..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 999999999999999999999999998754 2444444322110 000001111111111111100
Q ss_pred ----------cH----HHHHHHHHHhhCC------CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 ----------DT----EKLLSSMEKLRHG------QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 ----------d~----~~l~~~l~~l~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. +.+.+.+..+... .......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 182 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 11 1111222222111 11223457777778877777778999999999999998654
No 338
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.18 E-value=2.8e-11 Score=102.65 Aligned_cols=122 Identities=9% Similarity=0.056 Sum_probs=69.6
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCC----HHHHHhhcccCCCCCC----------
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT----EQELARVHEYNFDHPD---------- 106 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~----~~~~~~~~~~~f~~p~---------- 106 (303)
+..+.++.+++|.|+||||||||++.|++.+.+ .|-+.++...... .. .........+.++.|.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl 99 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE-PSFEATRSRNRYSVAYAAQKPWLLNATVEENI 99 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccc-ccccccchhhcceEEEEcCCCccccccHHHHH
Confidence 333999999999999999999999999998754 3434443322110 00 0000000111111111
Q ss_pred ----cccHHHHHHHHHHhhCCC-------------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 ----AFDTEKLLSSMEKLRHGQ-------------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 ----~~d~~~l~~~l~~l~~~~-------------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.++.+...+.+..+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 174 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence 111122222222221110 0122357778888877777888999999999999998654
No 339
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.18 E-value=1.9e-11 Score=106.40 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=74.7
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCC---------CC---HHHHHhhcccCCCC
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHN---------LT---EQELARVHEYNFDH 104 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~---------~~---~~~~~~~~~~~f~~ 104 (303)
...++..+.+|.+++|+|+||||||||++.|++.+++. |-+.++..+.-.. .. .......-.+.++.
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 100 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH 100 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecC
Confidence 33444449999999999999999999999999988653 3344443221100 00 00111111111111
Q ss_pred CC-----------------------cccHHHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 105 PD-----------------------AFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 105 p~-----------------------~~d~~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
+. ......+.+.++.+..... .....+|.++.+++..+.+.+.+++++++|+|+
T Consensus 101 ~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 180 (257)
T PRK10619 101 FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180 (257)
T ss_pred cccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 10 0011223344555443322 123457788888877777888999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+++|+.
T Consensus 181 ~~LD~~ 186 (257)
T PRK10619 181 SALDPE 186 (257)
T ss_pred ccCCHH
Confidence 999654
No 340
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.18 E-value=1.6e-11 Score=116.94 Aligned_cols=120 Identities=9% Similarity=0.055 Sum_probs=75.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCC----------------------CCCCCCHHHHHhhcc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDS----------------------FYHNLTEQELARVHE 99 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~~~~l~~D~----------------------~~~~~~~~~~~~~~~ 99 (303)
+.+|.+++|.|+||||||||++.|++.+++ .|.+.++..+ ++..++..+...+..
T Consensus 24 i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 24 VRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence 999999999999999999999999998864 3444443321 111222222221111
Q ss_pred cCCCCCCccc----HHHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 100 YNFDHPDAFD----TEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 100 ~~f~~p~~~d----~~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.....++ .+...+.++.+..... .....+|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~ 175 (500)
T TIGR02633 104 EITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK 175 (500)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 0000000011 1234445555544322 223468888899988888888999999999999999985
No 341
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.18 E-value=9.1e-13 Score=106.51 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC-------
Q 022073 15 GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF------- 85 (303)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~------- 85 (303)
.+.|++... +++|| + +.++.+||+.||||+||||.-.++.+...+. |-+.++..+.
T Consensus 11 ~K~y~kr~Vv~~Vsl-----~----------v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 11 AKSYKKRKVVNDVSL-----E----------VNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75 (243)
T ss_pred hHhhCCeeeeeeeeE-----E----------EcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHH
Confidence 667777665 77777 7 9999999999999999999999998877653 2333333332
Q ss_pred ---------------CCCCCHHHHHhh-cccCCCCCC-cccHHHHHHHHHHhhCCCccccC--cccCCCCccCCCCceec
Q 022073 86 ---------------YHNLTEQELARV-HEYNFDHPD-AFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRV 146 (303)
Q Consensus 86 ---------------~~~~~~~~~~~~-~~~~f~~p~-~~d~~~l~~~l~~l~~~~~v~~p--~~~~~~~~~~~~~~~~~ 146 (303)
++.++.++.... ......+.. +.....+...|+++....--..+ .+|.+...|+.++++.+
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 233333332211 111111111 12223345566655543322223 45667777777778888
Q ss_pred CCCcEEEEeccccccchh
Q 022073 147 NPSDVILLEGILVFHDSR 164 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~ 164 (303)
.++.++++|+|+++.||-
T Consensus 156 ~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 156 ANPKFILLDEPFAGVDPI 173 (243)
T ss_pred cCCCEEEecCCccCCCch
Confidence 999999999999999874
No 342
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2e-11 Score=106.30 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=79.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|.+ .+.....+..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+... ......
T Consensus 8 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 8 IKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 344555554432 1234445555999999999999999999999999998763 3444444322210 000011
Q ss_pred HHhhcccCCCCCCcc------------------c----HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~------------------d----~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+..+ + .+...+.+..+.... ......+|.++.+++..+.+.
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 111111111111100 0 112223333332211 112235777888887777778
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 166 ~~~p~lllLDEPt~~LD~~ 184 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPI 184 (259)
T ss_pred hcCCCEEEEcCCCccCCHH
Confidence 8999999999999999654
No 343
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2e-11 Score=105.81 Aligned_cols=120 Identities=12% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh---CC---CCEEEEeCCCCCCC-CCHHHHHhhcccCCCCCCc----------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL---HD---QRVVLVNQDSFYHN-LTEQELARVHEYNFDHPDA---------- 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l---~~---~~~~~l~~D~~~~~-~~~~~~~~~~~~~f~~p~~---------- 107 (303)
+.+|.+++|.|+||||||||++.|++.. ++ .|-+.++..+.... ...........+.++.+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~ 105 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVA 105 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHH
Confidence 9999999999999999999999999862 22 24444443322110 0001111111111111110
Q ss_pred ------------ccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ------------FDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ------------~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...+...+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 180 (250)
T PRK14245 106 YGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPI 180 (250)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 01112233444333211 1122357888888877777788999999999999999654
No 344
>PRK13948 shikimate kinase; Provisional
Probab=99.18 E-value=3e-10 Score=93.14 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHH-HHHHHHHhhCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEK-LLSSMEKLRHGQ 124 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~-l~~~l~~l~~~~ 124 (303)
..+..|.++|.+||||||+++.|++.+ +..+++.|.+........... .|...+.-.+.. -.+.+..+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D~~ie~~~g~si~~----if~~~Ge~~fR~~E~~~l~~l~--- 77 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL---MLHFIDTDRYIERVTGKSIPE----IFRHLGEAYFRRCEAEVVRRLT--- 77 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEECCHHHHHHHhCCHHH----HHHHhCHHHHHHHHHHHHHHHH---
Confidence 456789999999999999999999998 678889997653222111111 011101000111 111222221
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh---hhcCeEEEEecChHHHHHHHHhhCcc--ccCCCHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR---ELMNMKIFVDTDADVRLARRIRRDTV--EKGRDIA 199 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~---~~~d~~I~v~~~~~~~~~R~~~R~~~--~~~~~~~ 199 (303)
.....||.-|-....++..+ .....+||++++.++..+|+..++.- ..+...+
T Consensus 78 ----------------------~~~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~ 135 (182)
T PRK13948 78 ----------------------RLDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLG 135 (182)
T ss_pred ----------------------hcCCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHH
Confidence 11223444333333333322 22357899999999999997332111 1111122
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCCCCH-HHHHHHHHHHHH
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~v~~i~~ 247 (303)
.+.+.|.. ..|.| ..||++|++++.+. ..++.+++.++.
T Consensus 136 ~l~~l~~~-R~~~Y--------~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 136 RIRTLLNE-REPVY--------RQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHH-HHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 33333433 33333 34999998765443 444555555543
No 345
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.17 E-value=1.5e-11 Score=129.18 Aligned_cols=62 Identities=8% Similarity=0.132 Sum_probs=53.0
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV 80 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l 80 (303)
+.++++|++|+|+.. ..+.+...+..+++|.+++|+|+||||||||+++|.+.+.|. |-+.+
T Consensus 381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 468899999999754 346899999999999999999999999999999999998763 44455
No 346
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.5e-11 Score=106.55 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=85.1
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
++++|++++|.+ .+.....+..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ......
T Consensus 26 l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~ 103 (272)
T PRK14236 26 LEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103 (272)
T ss_pred EEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence 667888887743 2466777777999999999999999999999999998752 3444444322211 000011
Q ss_pred HHhhcccCCCCCCccc----------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d----------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++.+..+. .+.+.+.++.+.... ......+|.++.+++..+.+.
T Consensus 104 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1111111111111010 111222333322211 112235677777887777778
Q ss_pred cCCCcEEEEeccccccchhh
Q 022073 146 VNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~~ 165 (303)
+.+++++++|+|++++|+..
T Consensus 184 ~~~p~lllLDEPt~gLD~~~ 203 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPIS 203 (272)
T ss_pred HCCCCEEEEeCCcccCCHHH
Confidence 89999999999999997653
No 347
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=1.4e-11 Score=117.45 Aligned_cols=144 Identities=12% Similarity=0.179 Sum_probs=90.7
Q ss_pred ccccCcccccCC-CCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC-------------
Q 022073 21 FHMDGLEVRNKE-TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS------------- 84 (303)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~------------- 84 (303)
+++++++++|.. ...+....++..+.+|.+++|.|+||||||||++.|++.+.+ .|-+.++..+
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 339 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCC
Confidence 567888887742 123467778888999999999999999999999999998762 3444443211
Q ss_pred ------------CCCCCCHHHHHhhccc-CCCC----CCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCce
Q 022073 85 ------------FYHNLTEQELARVHEY-NFDH----PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 85 ------------~~~~~~~~~~~~~~~~-~f~~----p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~ 144 (303)
++..++..+...+... .+.. ......+...+.++.+... . ......+|.++.+|+..+.+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred CEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHH
Confidence 1112222222211100 0000 0000112344556665542 2 22345688888898888788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++++|+.
T Consensus 420 l~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 420 LLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred HhhCCCEEEEcCCCCCcCHh
Confidence 88999999999999999654
No 348
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.17 E-value=8.4e-10 Score=90.65 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
.+++|+|+|||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 58999999999999999999998754
No 349
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.17 E-value=2e-11 Score=114.07 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred ccccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC--------CCCCCCC
Q 022073 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD--------SFYHNLT 90 (303)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D--------~~~~~~~ 90 (303)
.+++|++++|.+.. .+.+..++..+.+|.+++|.|+||||||||+++|++.+.+. |-+.++.. .+...++
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lT 101 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCc
Confidence 45677777765542 24667777789999999999999999999999999998653 33333321 1223344
Q ss_pred HHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...+..........-..+.+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|+|++++|+.
T Consensus 102 V~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 444433211111100000111223344444333222 33467888888887777888999999999999999875
No 350
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=106.16 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=83.0
Q ss_pred hccCC-Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEe
Q 022073 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVN 81 (303)
Q Consensus 10 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~ 81 (303)
+.++. .+.|++. -++|+|| + +.+|.+++|.|+||||||||++.|++.+.+ .|-+.++
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~-----~----------i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHV-----P----------IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 33444 6666654 3588999 8 999999999999999999999999998854 3444444
Q ss_pred CCCCCC-CCCHHHHHhhcccCCCCCCcc--------------------cHHHHHHHHHHhhCCCcc------ccCcccCC
Q 022073 82 QDSFYH-NLTEQELARVHEYNFDHPDAF--------------------DTEKLLSSMEKLRHGQAV------DIPNYDFK 134 (303)
Q Consensus 82 ~D~~~~-~~~~~~~~~~~~~~f~~p~~~--------------------d~~~l~~~l~~l~~~~~v------~~p~~~~~ 134 (303)
..+... ............+.++.+..+ ..+.+.+.++.+.....+ ....++.+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 332210 001011111111112111110 012233344433321111 12346778
Q ss_pred CCccCCCCceecCCCcEEEEeccccccchh
Q 022073 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 135 ~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~ 183 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPI 183 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 888877777778999999999999999654
No 351
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.3e-11 Score=105.55 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=70.6
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CCEEEEeCCCCC----------------------CCC
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QRVVLVNQDSFY----------------------HNL 89 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~----~~~~~l~~D~~~----------------------~~~ 89 (303)
....+.++.+|.+++|+|+||||||||++.|++.++ + .|-+.++..+.. ...
T Consensus 21 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 100 (252)
T PRK14255 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF 100 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCC
Confidence 333444499999999999999999999999999753 2 233333332111 011
Q ss_pred CHHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 90 TEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 90 ~~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+..+...+......... ....+.+.+.++.+... . ......+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14255 101 SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 (252)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 22221111100000000 00011122223332211 0 11223577788888777778889999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 181 ~~ 182 (252)
T PRK14255 181 PI 182 (252)
T ss_pred HH
Confidence 54
No 352
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=6.3e-11 Score=102.24 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=97.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhc----ccCCCC---------------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVH----EYNFDH--------------- 104 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~----~~~f~~--------------- 104 (303)
+..|.|..|.|.||||||||.++|.++..|. |-+.++..+..+ ++..++..+. ...|++
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~-~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc-CCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 9999999999999999999999999988763 557777776654 4444432211 112221
Q ss_pred -------CCcccHHHHHHHHHHhhCC--CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc------
Q 022073 105 -------PDAFDTEKLLSSMEKLRHG--QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM------ 169 (303)
Q Consensus 105 -------p~~~d~~~l~~~l~~l~~~--~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~------ 169 (303)
|..-..+...+.|+..... ..-....+|.++.+|+..+++...+++++++|++|..+||-++..+
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~ 209 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence 2222234455555554332 2223347899999999888888999999999999999999765432
Q ss_pred ------CeEEEEecChHHHHH
Q 022073 170 ------NMKIFVDTDADVRLA 184 (303)
Q Consensus 170 ------d~~I~v~~~~~~~~~ 184 (303)
..+|||.=|.+..++
T Consensus 210 Lq~~l~KTIvFitHDLdEAlr 230 (386)
T COG4175 210 LQAKLKKTIVFITHDLDEALR 230 (386)
T ss_pred HHHHhCCeEEEEecCHHHHHh
Confidence 368899888887754
No 353
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.4e-11 Score=117.64 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=85.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe------------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN------------------ 81 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~------------------ 81 (303)
++++|+++.|. .....++..+.+|.+++|+|+||||||||++.|++.+++. |-+.+.
T Consensus 266 l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 266 FEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 44566665431 2455566669999999999999999999999999987642 333332
Q ss_pred ---CC----CCCCCCCHHHHHhhcccC----C----CC-CCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCC
Q 022073 82 ---QD----SFYHNLTEQELARVHEYN----F----DH-PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFP 142 (303)
Q Consensus 82 ---~D----~~~~~~~~~~~~~~~~~~----f----~~-p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~ 142 (303)
++ .++..++..+...+.... + .. ....+.+.+.+.++.+... . ......+|.++.+|+..+
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 22 122222333322211100 0 00 0000112344556665543 2 223346888888888887
Q ss_pred ceecCCCcEEEEeccccccchh
Q 022073 143 ARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+++++|+|||++++|+.
T Consensus 422 ral~~~p~lLlLDEPt~~LD~~ 443 (510)
T PRK09700 422 KWLCCCPEVIIFDEPTRGIDVG 443 (510)
T ss_pred HHHhcCCCEEEECCCCCCcCHH
Confidence 8888999999999999999654
No 354
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=105.72 Aligned_cols=123 Identities=11% Similarity=-0.028 Sum_probs=68.5
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC----------------------CCCCHHHH
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY----------------------HNLTEQEL 94 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~----------------------~~~~~~~~ 94 (303)
..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++..+.. ...+..+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 106 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYEN 106 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHH
Confidence 33999999999999999999999999987541 243333321111 00121111
Q ss_pred HhhcccCCCCCCccc-HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 95 ARVHEYNFDHPDAFD-TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 95 ~~~~~~~f~~p~~~d-~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
..+....+....... ...+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|+.++|+..
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 107 VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111100000000000 111222333322211 11223567777778777777788999999999999996653
No 355
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.17 E-value=1.2e-09 Score=88.24 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=30.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
|+|+|++||||||+++.|++.+ +..+++.|++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l---~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL---GAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc---CCeEEeCccccC
Confidence 5789999999999999999998 578899999863
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.17 E-value=3.3e-11 Score=127.69 Aligned_cols=140 Identities=20% Similarity=0.244 Sum_probs=108.4
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCCCC
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHN 88 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------~~~~l~~D~~~~~ 88 (303)
+.+.++|++|+|++. ..+.+..++..+++|..++|+|++|||||||++.|.+.+++. .+.+++++.+..+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 458899999999754 357899999999999999999999999999999999998753 2678889999888
Q ss_pred CCHHHHHhhcccCCCCCCcccHHHHHHH---------HHHhhCCCcccc----CcccCCCCccCCCCceecCCCcEEEEe
Q 022073 89 LTEQELARVHEYNFDHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLE 155 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~~~d~~~l~~~---------l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~~~~~vvild 155 (303)
-+..++..++. | +|.+...+. +..+..|....+ -.+|.++.+|+..+++...+++++++|
T Consensus 693 gTIreNI~fg~-----~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLD 765 (1622)
T PLN03130 693 ATVRDNILFGS-----P--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFD 765 (1622)
T ss_pred CCHHHHHhCCC-----c--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence 88887766553 2 344443333 344444433322 247888888988888888999999999
Q ss_pred ccccccchhh
Q 022073 156 GILVFHDSRV 165 (303)
Q Consensus 156 g~~~~~d~~~ 165 (303)
+|++.+|+..
T Consensus 766 EptSALD~~~ 775 (1622)
T PLN03130 766 DPLSALDAHV 775 (1622)
T ss_pred CCccccCHHH
Confidence 9999998653
No 357
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.17 E-value=4.1e-10 Score=92.21 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~ 88 (303)
+.+|.++|++||||||+++.|++.++. ..+.++.|.|+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~ 41 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEA 41 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHh
Confidence 568999999999999999999998742 2355677776643
No 358
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.16 E-value=9.9e-12 Score=118.83 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=89.2
Q ss_pred ccccCcccccCC---CCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEe-CCCCC--CCCCH--
Q 022073 21 FHMDGLEVRNKE---TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN-QDSFY--HNLTE-- 91 (303)
Q Consensus 21 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~-~D~~~--~~~~~-- 91 (303)
++++|++++|.. ...+....++..+.+|.+++|.|+||||||||++.|++.+++ .|-+.++ ..... .....
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence 667888887742 223467778888999999999999999999999999998864 3445553 22110 00110
Q ss_pred -HHHHhhcccCCCCCCcc---------------------cHHHHHHHHHHhhCCC-------ccccCcccCCCCccCCCC
Q 022073 92 -QELARVHEYNFDHPDAF---------------------DTEKLLSSMEKLRHGQ-------AVDIPNYDFKSYKNNVFP 142 (303)
Q Consensus 92 -~~~~~~~~~~f~~p~~~---------------------d~~~l~~~l~~l~~~~-------~v~~p~~~~~~~~~~~~~ 142 (303)
........+.++.+.-+ ..+...+.+..+.... ......+|.++.+|+..+
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 01111112222222110 0112233444443322 122346788888888777
Q ss_pred ceecCCCcEEEEeccccccchh
Q 022073 143 ARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+++++++|+|++++|+.
T Consensus 440 ral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 440 QVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHhcCCCEEEEeCCcccCCHH
Confidence 8888999999999999999664
No 359
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.16 E-value=3.8e-10 Score=94.64 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
++.+|+|.|+.||||||+++.|++.+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999998854
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.16 E-value=2.6e-11 Score=128.11 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=107.2
Q ss_pred cccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCCCCC
Q 022073 20 GFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHNL 89 (303)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------~~~~l~~D~~~~~~ 89 (303)
.++++|++|+|++. +.+.+..++..+++|..++|+|++|||||||++.|.+.+++. .+.+++++.+..+-
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 58899999999764 457899999999999999999999999999999999988753 36788999998877
Q ss_pred CHHHHHhhcccCCCCCCcccHHHHHHHH---------HHhhCCCcccc----CcccCCCCccCCCCceecCCCcEEEEec
Q 022073 90 TEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEG 156 (303)
Q Consensus 90 ~~~~~~~~~~~~f~~p~~~d~~~l~~~l---------~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~~~~~vvildg 156 (303)
+..++..++. | ++.+...+.+ +.+..|....+ -.+|.++.+|+..+++...+++++++|+
T Consensus 694 TIreNI~fg~-----~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 694 TVRENILFGS-----D--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred cHHHHhhcCC-----c--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8877766553 1 3444444433 33333333222 2478888888888888889999999999
Q ss_pred cccccchh
Q 022073 157 ILVFHDSR 164 (303)
Q Consensus 157 ~~~~~d~~ 164 (303)
|++.+|+.
T Consensus 767 ptSaLD~~ 774 (1495)
T PLN03232 767 PLSALDAH 774 (1495)
T ss_pred CccccCHH
Confidence 99999865
No 361
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.16 E-value=2.7e-11 Score=116.68 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=87.9
Q ss_pred hccCC-Ccccc-c-ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------
Q 022073 10 IEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------- 76 (303)
Q Consensus 10 ~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------- 76 (303)
++.++ ++.|+ + .-|+|+|| + +.+|.+++|+|+||||||||++.|++.+.+. |
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~-----~----------i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~ 71 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISL-----S----------FFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK 71 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceE-----E----------ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE
Confidence 44455 56665 3 23477777 6 9999999999999999999999999988652 2
Q ss_pred EEEEeCCCC-CCCCCHHHHHhhccc--------------CCCCCC---------------------ccc-HHHHHHHHHH
Q 022073 77 VVLVNQDSF-YHNLTEQELARVHEY--------------NFDHPD---------------------AFD-TEKLLSSMEK 119 (303)
Q Consensus 77 ~~~l~~D~~-~~~~~~~~~~~~~~~--------------~f~~p~---------------------~~d-~~~l~~~l~~ 119 (303)
+.+++++.. +..++..+....+.. .+..+. .++ ...+.+.+..
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 345555532 233455444322100 001010 011 1223334444
Q ss_pred hhCCC-ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 120 l~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~ 197 (556)
T PRK11819 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197 (556)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChH
Confidence 43321 1233467888888887778888999999999999999985
No 362
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.16 E-value=3.7e-11 Score=102.35 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=81.4
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccC
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYN 101 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~ 101 (303)
++|||| + +.++.++||.|.|||||||+++.|.++..+. |-+++...+... +.
T Consensus 29 vd~Vsf-----~----------i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~-~~----------- 81 (268)
T COG4608 29 VDGVSF-----S----------IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK-LS----------- 81 (268)
T ss_pred ecceeE-----E----------EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh-cc-----------
Confidence 488888 7 9999999999999999999999999998753 556666655331 11
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCcc--ccC-cccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~v--~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
..-..+.+.+.|..+...... .+| .+|.++.+|..++++.+-+++++|.|+|...+|.
T Consensus 82 ----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 ----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred ----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 011223345566655543322 334 5899999998888888899999999999998865
No 363
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.16 E-value=3.3e-11 Score=104.31 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=77.5
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC----------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF---------------- 85 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~---------------- 85 (303)
.++++|| + +.+|.+++|+|+||||||||++.|++.+++.|-+.++..+.
T Consensus 11 ~l~~vsl-----~----------i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 11 RLGPLSA-----E----------VRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred eecceEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEec
Confidence 5788888 7 89999999999999999999999999876545444443221
Q ss_pred -----CCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecC-------CCcE
Q 022073 86 -----YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN-------PSDV 151 (303)
Q Consensus 86 -----~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~-------~~~v 151 (303)
+...+..+...+... ...+.....+.+.+.++.+...... ....+|.++.+++..+.+.+. ++++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred ccCccCCCccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 111122221111100 0000001122344555555443222 234577788888766666665 5699
Q ss_pred EEEeccccccchh
Q 022073 152 ILLEGILVFHDSR 164 (303)
Q Consensus 152 vildg~~~~~d~~ 164 (303)
+++|+|+.++|+.
T Consensus 155 lllDEPt~~LD~~ 167 (248)
T PRK03695 155 LLLDEPMNSLDVA 167 (248)
T ss_pred EEEcCCcccCCHH
Confidence 9999999999665
No 364
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.3e-11 Score=106.94 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=81.7
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCCCCCHHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYHNLTEQEL 94 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~~~~~~~~ 94 (303)
+.+++++++|++ .+....++..+.++.+++|+|+||||||||++.|++.+.+ .|-+.++.............
T Consensus 22 l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 22 MAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 456666666642 2355566666999999999999999999999999998764 34344433211100000011
Q ss_pred HhhcccCCCCCCcc------------------cHH----HHHHHHHHhhCCC------ccccCcccCCCCccCCCCceec
Q 022073 95 ARVHEYNFDHPDAF------------------DTE----KLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 95 ~~~~~~~f~~p~~~------------------d~~----~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~ 146 (303)
.....+.++.+..+ ... ...+.+..+.... ......+|.++.+++..+.+.+
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 11111111111111 111 1122333332221 0112357777888877777778
Q ss_pred CCCcEEEEeccccccchh
Q 022073 147 NPSDVILLEGILVFHDSR 164 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~ 164 (303)
.+++++++|+|+.++|..
T Consensus 180 ~~p~lllLDEPt~~LD~~ 197 (276)
T PRK14271 180 VNPEVLLLDEPTSALDPT 197 (276)
T ss_pred cCCCEEEEcCCcccCCHH
Confidence 899999999999999654
No 365
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.16 E-value=9.1e-12 Score=119.32 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=91.0
Q ss_pred ccccCcccccCCC---------CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC-------
Q 022073 21 FHMDGLEVRNKET---------GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS------- 84 (303)
Q Consensus 21 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~------- 84 (303)
++++|++++|... ..+.+..++..+.+|.+++|+|+||||||||++.|++.++..|-+.++..+
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~ 355 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRR 355 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchh
Confidence 6678888888421 234677788889999999999999999999999999987544444443322
Q ss_pred -------------------CCCCCCHHHHHhhcccCCC--CCCcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCC
Q 022073 85 -------------------FYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNV 140 (303)
Q Consensus 85 -------------------~~~~~~~~~~~~~~~~~f~--~p~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~ 140 (303)
++...+..+........+. .+..-..+.+.+.+..+.... ......+|.++.+|+.
T Consensus 356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 435 (529)
T PRK15134 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA 435 (529)
T ss_pred hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHH
Confidence 1222222222211100000 000001123445555554431 1233467888888888
Q ss_pred CCceecCCCcEEEEeccccccchh
Q 022073 141 FPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 141 ~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+.+++++|+|+|++++|+.
T Consensus 436 la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 436 IARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred HHHHHhCCCCEEEeeCCccccCHH
Confidence 888888999999999999999765
No 366
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3.6e-11 Score=104.32 Aligned_cols=126 Identities=11% Similarity=-0.024 Sum_probs=70.4
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CCEEEEeCCCC----------------------CCCCC
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QRVVLVNQDSF----------------------YHNLT 90 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~----~~~~~l~~D~~----------------------~~~~~ 90 (303)
...+..+.+|.+++|+|+||||||||++.|++... + .|-+.++..+. ....+
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~t 101 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMS 101 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCc
Confidence 33333499999999999999999999999998742 3 24444433221 11112
Q ss_pred HHHHHhhcccCCCCC-CcccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 91 EQELARVHEYNFDHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p-~~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
..+........+... .......+...++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 102 IYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181 (252)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 222111110000000 0000111222333332111 112235777888887777777899999999999999965
Q ss_pred h
Q 022073 164 R 164 (303)
Q Consensus 164 ~ 164 (303)
.
T Consensus 182 ~ 182 (252)
T PRK14239 182 I 182 (252)
T ss_pred H
Confidence 4
No 367
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.15 E-value=2.4e-11 Score=105.13 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=71.4
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEEeCCCCCCCCCHHHHH-hhcccCCCCC--------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDSFYHNLTEQELA-RVHEYNFDHP-------- 105 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~-~~~~~l~~D~~~~~~~~~~~~-~~~~~~f~~p-------- 105 (303)
...++..+.++.+++|+|+||||||||++.|++.+ ++ .|-+.++..+.. ........ ....+.++.+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~-~~~~~~~~~~~i~~~~q~~~~~~~~~~ 95 (248)
T PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL-ELSPEDRAGEGIFMAFQYPVEIPGVSN 95 (248)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc-cCCHHHHhhcceEEEecCchhccchhH
Confidence 33334449999999999999999999999999984 33 344444443221 11111110 0000111111
Q ss_pred -----------------CcccH----HHHHHHHHHhhCCC---ccccC-cccCCCCccCCCCceecCCCcEEEEeccccc
Q 022073 106 -----------------DAFDT----EKLLSSMEKLRHGQ---AVDIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (303)
Q Consensus 106 -----------------~~~d~----~~l~~~l~~l~~~~---~v~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~ 160 (303)
..++. +.+.+.++.+.... ..... .+|.++.+++..+.+.+.+++++++|+|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~ 175 (248)
T PRK09580 96 QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 175 (248)
T ss_pred HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 00111 11222333222211 11111 5788888888777888899999999999999
Q ss_pred cchh
Q 022073 161 HDSR 164 (303)
Q Consensus 161 ~d~~ 164 (303)
+|+.
T Consensus 176 LD~~ 179 (248)
T PRK09580 176 LDID 179 (248)
T ss_pred CCHH
Confidence 9654
No 368
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.15 E-value=1.5e-11 Score=103.97 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=76.2
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE-EeCC--------CCCCCCCHH
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL-VNQD--------SFYHNLTEQ 92 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~-l~~D--------~~~~~~~~~ 92 (303)
++|+|| + +.++.+++|.|+||||||||++.|++.+++. |-+. +... .+++.++..
T Consensus 3 l~~vs~-----~----------i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 3 LDKTDF-----V----------MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGE 67 (213)
T ss_pred eeeeeE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHH
Confidence 577888 7 9999999999999999999999999987643 3232 3321 122334444
Q ss_pred HHHhhcccCCCCCCcccHHHHHHHH-H--HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSSM-E--KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~l-~--~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+........+. .+.......+ . .+..........+|.++.+++..+.+.+.+++++++|+|+...|+.
T Consensus 68 enl~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 68 ENARMMASLYG----LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHcC----CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 44332211111 1111112111 1 1111112233467888888877777788999999999998887554
No 369
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.15 E-value=8.1e-12 Score=121.65 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=90.2
Q ss_pred ccccCcccccCCC---------CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCC
Q 022073 21 FHMDGLEVRNKET---------GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLT 90 (303)
Q Consensus 21 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~ 90 (303)
++++|++++|... ..+.+..++..+.+|.+++|+|+||||||||++.|++.+.+. |-+.+...+... ..
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~-~~ 392 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT-LS 392 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc-CC
Confidence 6678888888521 124567788889999999999999999999999999987642 334443322211 11
Q ss_pred HHHH---HhhcccCCCCCC-------------------------cccHHHHHHHHHHhhCC-C--ccccCcccCCCCccC
Q 022073 91 EQEL---ARVHEYNFDHPD-------------------------AFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNN 139 (303)
Q Consensus 91 ~~~~---~~~~~~~f~~p~-------------------------~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~ 139 (303)
.... .....+.|++|. .-..+...+.|+.+... . ......+|.++.+|+
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 1110 001112222210 00012333455555442 1 123346888899998
Q ss_pred CCCceecCCCcEEEEeccccccchh
Q 022073 140 VFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 140 ~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+.+.+++++|+|+|++++|..
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHH
Confidence 8888888999999999999999764
No 370
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.8e-11 Score=104.44 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=68.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe--------------------------CCC-CCCCCCHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN--------------------------QDS-FYHNLTEQELAR 96 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~--------------------------~D~-~~~~~~~~~~~~ 96 (303)
+.++.+++|.|+||||||||++.|++.+.+. |-+.++ ++. ++...+..+...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 112 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA 112 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH
Confidence 9999999999999999999999999987643 111222 111 111112222111
Q ss_pred hccc--CCCCCCcccHHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 97 VHEY--NFDHPDAFDTEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 97 ~~~~--~f~~p~~~d~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.... .+. +.......+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|+.++|..
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~ 187 (257)
T PRK14246 113 YPLKSHGIK-EKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIV 187 (257)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHH
Confidence 1100 000 00000112233444443321 1122346777777777777788999999999999998654
No 371
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1.9e-11 Score=107.30 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=79.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
+.++|++++|.+ .+....++..+.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+... ......
T Consensus 21 l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 21 FEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred EEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 344555554432 1244445555999999999999999999999999988642 3444444432211 000011
Q ss_pred HHhhcccCCCCCCccc--------------------HHHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCceecC
Q 022073 94 LARVHEYNFDHPDAFD--------------------TEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d--------------------~~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~~~ 147 (303)
......+.++.+..+. .+.+...++.+... . ......+|.++.+++..+.+.+.
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 1111112222211110 01112222222111 0 11223467788888777778889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++|+|+|++++|+.
T Consensus 179 ~p~lllLDEPt~~LD~~ 195 (274)
T PRK14265 179 KPDVLLMDEPCSALDPI 195 (274)
T ss_pred CCCEEEEeCCcccCCHH
Confidence 99999999999999654
No 372
>PRK13947 shikimate kinase; Provisional
Probab=99.15 E-value=8.1e-10 Score=89.99 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~ 88 (303)
-|.|+|++||||||+++.|++.| ++.+++.|.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d~~~~~ 38 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTDKEIEK 38 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECchhhhh
Confidence 48999999999999999999999 6888999876543
No 373
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.4e-10 Score=92.11 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=38.4
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCC
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHN 88 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~ 88 (303)
....++.+|.++|.|||||||+|.+|.+.|... .+.+++.|...+.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 346778999999999999999999999998754 4688898876544
No 374
>PLN02200 adenylate kinase family protein
Probab=99.14 E-value=7.4e-10 Score=94.71 Aligned_cols=122 Identities=20% Similarity=0.346 Sum_probs=69.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
.+.+.+|.|+|++||||||+|+.|++.+ ++.+++.++..+. +... ...+...+.+. +..|.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~---g~~his~gdllR~----~i~~---------~s~~~~~i~~~---~~~G~ 100 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF---GFKHLSAGDLLRR----EIAS---------NSEHGAMILNT---IKEGK 100 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh---CCeEEEccHHHHH----HHhc---------cChhHHHHHHH---HHcCC
Confidence 4567899999999999999999999998 6788888776531 1100 00111111111 11222
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh--h----hhhcCeEEEEecChHHHHHHHHhhC
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR--V----RELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~--~----~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
.+.-.........++. .....-+|+||.....+.. + ...+|++||++++.++.++|+..|.
T Consensus 101 ~vp~e~~~~~l~~~l~-----~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 101 IVPSEVTVKLIQKEME-----SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred CCcHHHHHHHHHHHHh-----cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 1110000000000000 0112348999954322111 1 1257899999999999999999885
No 375
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=5.8e-11 Score=102.98 Aligned_cols=126 Identities=11% Similarity=0.022 Sum_probs=70.8
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--C----CCEEEEeCCCCCCC-CCHHHHHhhcccCCCCCCcc---
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--D----QRVVLVNQDSFYHN-LTEQELARVHEYNFDHPDAF--- 108 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~----~~~~~l~~D~~~~~-~~~~~~~~~~~~~f~~p~~~--- 108 (303)
...+..+.+|.+++|+|+||||||||++.|++... + .|-+.+...+.... ...........+.++.+..+
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~t 101 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKS 101 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCC
Confidence 33334499999999999999999999999999864 1 34333332211100 00000011111111111111
Q ss_pred ----------------c----HHHHHHHHHHhhCCC----c--cccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 109 ----------------D----TEKLLSSMEKLRHGQ----A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 109 ----------------d----~~~l~~~l~~l~~~~----~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+ .+.+.+.++.+.... . .....+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 102 v~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 181 (251)
T PRK14244 102 IYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181 (251)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 0 112223344433221 1 1223577778888777777789999999999999986
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 182 ~~ 183 (251)
T PRK14244 182 PV 183 (251)
T ss_pred HH
Confidence 54
No 376
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.1e-11 Score=106.62 Aligned_cols=142 Identities=14% Similarity=0.167 Sum_probs=85.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCCC-CCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYHN-LTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~~-~~~~~ 93 (303)
+.+++++++|.+ .+.+...+..+.+|.+++|+|+||||||||++.|++... ..|-+.++....... .....
T Consensus 40 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 40 VVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred EEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 567888887753 246677788899999999999999999999999999743 234444433221100 00001
Q ss_pred HHhhcccCCCCCCcc------------------c----HHHHHHHHHHhhCC----C--ccccCcccCCCCccCCCCcee
Q 022073 94 LARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHG----Q--AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~------------------d----~~~l~~~l~~l~~~----~--~v~~p~~~~~~~~~~~~~~~~ 145 (303)
......+.++++..+ + .+.+.+.++.+... . ......+|.++.+++..+.+.
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 111111222222111 0 11222333333211 1 112345778888888777788
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++|+|+|++++|+.
T Consensus 198 ~~~p~lllLDEPt~gLD~~ 216 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPK 216 (286)
T ss_pred hcCCCEEEEeCCCccCCHH
Confidence 8999999999999999654
No 377
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.5e-11 Score=107.20 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=83.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC--------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY-------- 86 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~-------- 86 (303)
+.+++++++|.+ .+.+..++..+.+|.+++|+|+||||||||++.|++.+.+ .|-+.++..+..
T Consensus 46 l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 46 LSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred EEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 556777776643 2466677777999999999999999999999999998741 333443332111
Q ss_pred --------------CCCCHHHHHhhcccCC------------CCC-CcccHHHHHHHHHHhhCCC------ccccCcccC
Q 022073 87 --------------HNLTEQELARVHEYNF------------DHP-DAFDTEKLLSSMEKLRHGQ------AVDIPNYDF 133 (303)
Q Consensus 87 --------------~~~~~~~~~~~~~~~f------------~~p-~~~d~~~l~~~l~~l~~~~------~v~~p~~~~ 133 (303)
...+..+......... ... .....+.+.+.+..+.... ......+|.
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 1112222111110000 000 0000122333333332210 112235777
Q ss_pred CCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~ 234 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDPI 234 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 8888887777888999999999999999654
No 378
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.14 E-value=3.5e-11 Score=104.94 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe-------CCC-CCCCCCHHHHHhhcccCCCCCCcccHHHH--
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN-------QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKL-- 113 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~-------~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l-- 113 (303)
+.+|.+++|.|+||||||||++.|++.+++. |-+.++ +.. +....+..+......... .++.+..
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~ 122 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCM----GFKRKEIKA 122 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHc----CCCHHHHHH
Confidence 9999999999999999999999999988653 322222 222 222344443322211111 1222222
Q ss_pred --HHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 114 --LSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 114 --~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...+..+.....+ ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 123 MTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 2233333322222 33467888888877777778899999999999999764
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.14 E-value=1.8e-12 Score=101.65 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc---------ccHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDA---------FDTEKLL 114 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~---------~d~~~l~ 114 (303)
+.++.+++|+|+||||||||++.|++.+.+. +.+.++..+... ...........+.+..+.. .......
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~ 86 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE 86 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 8889999999999999999999999988643 445555444332 2222222222222222110 1223444
Q ss_pred HHHHHhhCCC--cccc----CcccCCCCccCCCCceecCCCcEEEEecccc
Q 022073 115 SSMEKLRHGQ--AVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (303)
Q Consensus 115 ~~l~~l~~~~--~v~~----p~~~~~~~~~~~~~~~~~~~~~vvildg~~~ 159 (303)
+.+..+.... ...+ ..+|.++.+++..+.+.+.+++++++|+|++
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 5555554322 1222 4567777777777777789999999999974
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.14 E-value=4.1e-11 Score=109.03 Aligned_cols=139 Identities=12% Similarity=0.155 Sum_probs=93.9
Q ss_pred hccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------
Q 022073 10 IEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------ 75 (303)
Q Consensus 10 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------ 75 (303)
++.+. ++.|+++.. +++|| + +.++.|.+|.|.||+|||||.+.|.+.+.|.
T Consensus 5 l~~~~itK~f~~~~And~V~l-----~----------v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 5 LEMRGITKRFPGVVANDDVSL-----S----------VKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred EEEeccEEEcCCEEecCceee-----e----------ecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 44555 889999887 99999 8 9999999999999999999999999999873
Q ss_pred ----------CEEEEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhC----CC--ccccCcccCCCCcc
Q 022073 76 ----------RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH----GQ--AVDIPNYDFKSYKN 138 (303)
Q Consensus 76 ----------~~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~----~~--~v~~p~~~~~~~~~ 138 (303)
++-.+++-. ++..+|..++..++...- .....+.....+.+..+.. .- ...+..++-+..||
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~-~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQR 148 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQR 148 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccc-cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHH
Confidence 333333322 223444444444433211 1123466665555554432 11 12334456677777
Q ss_pred CCCCceecCCCcEEEEeccccccchh
Q 022073 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 139 ~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+......+++++|+|+|++-+.|.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 76666777899999999999987654
No 381
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.14 E-value=1e-10 Score=106.73 Aligned_cols=167 Identities=14% Similarity=0.187 Sum_probs=109.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCCCCCCHHHHHhhcc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHE 99 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~~~~~~~~~~~~~~ 99 (303)
..++++++-.++...|++.++++.+..|..+||.||||||||||++.|.+.+.+ .|.+-++.-+++ ++..+++-++-.
T Consensus 335 L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~-qWd~e~lG~hiG 413 (580)
T COG4618 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR-QWDREQLGRHIG 413 (580)
T ss_pred eeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh-cCCHHHhccccC
Confidence 567888887777777899999999999999999999999999999999998875 456777765544 355555443333
Q ss_pred cCCCC----CC-----------cccHH---------HHHHHHHHhhCCCcccc----CcccCCCCccCCCCceecCCCcE
Q 022073 100 YNFDH----PD-----------AFDTE---------KLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 100 ~~f~~----p~-----------~~d~~---------~l~~~l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
|--++ ++ .-|.+ ..++.+..+..|-+..+ ..+|.++.||...+++...++.+
T Consensus 414 YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 414 YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence 32111 00 11222 12233344444433322 23577777876666666788999
Q ss_pred EEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHH
Q 022073 152 ILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (303)
Q Consensus 152 vildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (303)
+|+|||-+.+ |..-|..+.+.+..- +.+|-+...+.|
T Consensus 494 vVLDEPNsNL--------------D~~GE~AL~~Ai~~~-k~rG~~vvviaH 530 (580)
T COG4618 494 VVLDEPNSNL--------------DSEGEAALAAAILAA-KARGGTVVVIAH 530 (580)
T ss_pred EEecCCCCCc--------------chhHHHHHHHHHHHH-HHcCCEEEEEec
Confidence 9999999987 666677777765532 233444433333
No 382
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.13 E-value=4.4e-11 Score=115.15 Aligned_cols=140 Identities=14% Similarity=0.041 Sum_probs=95.7
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCC--CCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDS--FYHN 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~--~~~~ 88 (303)
++++|++++|.+ .+....++..+.+|.+++|.|+||||||||++.|++.+.+. | +.++.++. ++..
T Consensus 323 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 323 IEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400 (552)
T ss_pred EEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCC
Confidence 667888887753 24677788889999999999999999999999999987642 2 34556652 4445
Q ss_pred CCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+..+........+... .........+..+.... ......+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 401 ~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~ 477 (552)
T TIGR03719 401 KTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVE 477 (552)
T ss_pred CcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 56555443321111101 11122345566654422 2234578888899988878888999999999999999764
No 383
>PLN03211 ABC transporter G-25; Provisional
Probab=99.13 E-value=2e-11 Score=119.16 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=82.6
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---C----------------EEEEeCCCC-CCCCCHHHHHhhc
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---R----------------VVLVNQDSF-YHNLTEQELARVH 98 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---~----------------~~~l~~D~~-~~~~~~~~~~~~~ 98 (303)
..++..+.+|.+++|.|+||||||||++.|++.+.+. | +.++.+++. +..++..+...+.
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 164 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFC 164 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHH
Confidence 3333349999999999999999999999999987541 2 334444433 3445666654433
Q ss_pred ccCCCCCCccc----HHHHHHHHHHhhCCCc-------cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFD----TEKLLSSMEKLRHGQA-------VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d----~~~l~~~l~~l~~~~~-------v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... ..|.... .+...+.++.+...+. .....+|.++.+|+..+.+.+.+++++++|||+.++|..
T Consensus 165 a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 165 SLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 211 1121111 2234455665544321 123468999999988888888999999999999999975
No 384
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.6e-11 Score=97.22 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=83.0
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC--------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY-------------- 86 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~-------------- 86 (303)
-|.++|| . +..+..+.|.|+||||||||++.|++.+.|. |-+.+.....-
T Consensus 17 lf~~L~f-----~----------l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 17 LFSDLSF-----T----------LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred eecceeE-----E----------EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 3588888 7 8888899999999999999999999999864 33444432211
Q ss_pred ------CCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccCc--ccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 87 ------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPN--YDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 87 ------~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~--~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
..++..|...+-...++ ..+.+.+.+.+..+......+.|. .|-++.+|+..++..+...+++|+|+|+
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~---~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhC---CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 11111221111111111 134456677777777665555665 4556666666666677999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+.+|++
T Consensus 159 taLDk~ 164 (209)
T COG4133 159 TALDKE 164 (209)
T ss_pred cccCHH
Confidence 998664
No 385
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.13 E-value=3.6e-11 Score=104.38 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=74.7
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-----CCCCCCHHHHH----hhcccCCCCCC----
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-----FYHNLTEQELA----RVHEYNFDHPD---- 106 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~-----~~~~~~~~~~~----~~~~~~f~~p~---- 106 (303)
++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+ .. .....+.. ....+.++.+.
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~ 100 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY-QLSEAERRRLMRTEWGFVHQNPRDGLR 100 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccc-cCCHHHHHHhhhcceEEEEeCcccccC
Confidence 33339999999999999999999999999988653 444444322 11 11111110 01111121110
Q ss_pred ---------------------cccHHHHHHHHHHhhCCC-cc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 107 ---------------------AFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 107 ---------------------~~d~~~l~~~l~~l~~~~-~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
......+.+.++.+.... .. ....+|.++.+++..+.+.+.+++++++|+|++++|
T Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD 180 (253)
T TIGR02323 101 MRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180 (253)
T ss_pred ccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 000123334455554431 12 233578888888877788889999999999999997
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 181 ~~ 182 (253)
T TIGR02323 181 VS 182 (253)
T ss_pred HH
Confidence 64
No 386
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.13 E-value=8.5e-11 Score=116.40 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=66.0
Q ss_pred EEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccccc-EEec
Q 022073 151 VILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIP 229 (303)
Q Consensus 151 vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~ 229 (303)
-+|+||--.+ ....+..+++||+++++++|.+||..-.. ...+.+.+..+...+...+..+-+.|.+...| ++|+
T Consensus 191 ~~V~eGRDig--TvVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iD 266 (863)
T PRK12269 191 RVVCEGRDLT--TVVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVD 266 (863)
T ss_pred CEEEECCCCc--cEECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEE
Confidence 4788886554 34567788999999999999999976532 23567888888888887778888999888888 5566
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q 022073 230 RGGDN-HVAIDLIVQHIRT 247 (303)
Q Consensus 230 ~~~~~-~~~~~~~v~~i~~ 247 (303)
++..+ +..++.+++.+..
T Consensus 267 ts~l~ieevv~~i~~~~~~ 285 (863)
T PRK12269 267 TSCLTIEEVCERIAREAHR 285 (863)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 55433 2444555555443
No 387
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.13 E-value=7.5e-12 Score=108.78 Aligned_cols=118 Identities=15% Similarity=0.267 Sum_probs=78.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------CEEEEeCCCCCCCCCHHHHHhh----cccCCCCCCc-cc----
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVNQDSFYHNLTEQELARV----HEYNFDHPDA-FD---- 109 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------~~~~l~~D~~~~~~~~~~~~~~----~~~~f~~p~~-~d---- 109 (303)
++++.++||+|.|||||||+++.|.+.++.. |-..+...+.. .++..+..++ -.+.|++|-. +|
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~-~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~ 106 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL-SLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc-cCCHHHHHhhcCceEEEEEcCchhhcCChhh
Confidence 9999999999999999999999999999732 22334444433 3444443221 2345665421 11
Q ss_pred ---------------------HHHHHHHHHHhhCCCc----cccC-cccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 110 ---------------------TEKLLSSMEKLRHGQA----VDIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 110 ---------------------~~~l~~~l~~l~~~~~----v~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
.+...+.|+.+..... -.+| .+|.++.||+.++.+.+.+++++|.|+|+..+|.
T Consensus 107 Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDv 186 (316)
T COG0444 107 IGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186 (316)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhH
Confidence 1123334444443332 1344 5899999999888888899999999999999864
No 388
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.13 E-value=1.6e-11 Score=97.21 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=61.4
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~ 119 (303)
.+....++.+++|.|+||||||||++.|++.+++. |-+.++.. ....
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~-------------------- 66 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIG-------------------- 66 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEE--------------------
Confidence 33349999999999999999999999999987643 22333221 0000
Q ss_pred hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 120 l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+|.++.+++..+.+.+.+++++++|+|+.++|+.
T Consensus 67 -------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 67 -------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred -------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11226677777776667778899999999999998654
No 389
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=5.5e-11 Score=103.89 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=79.7
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCCC-CCCHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFYH-NLTEQE 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~~-~~~~~~ 93 (303)
+++++++++|.+ .+.....+..+.++.+++|.|+||||||||++.|++.+.+ .|-+.++..+... ......
T Consensus 11 l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 11 LRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 345555555532 1344555555999999999999999999999999997641 3445544422210 001111
Q ss_pred HHhhcccCCCCCCccc--------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecC
Q 022073 94 LARVHEYNFDHPDAFD--------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 94 ~~~~~~~~f~~p~~~d--------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~ 147 (303)
......+.++++..+. .+.....+..+.... ......+|.++.+++..+.+.+.
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1111112222211110 011112222221110 11223477778888777777889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++|+|+|++++|+.
T Consensus 169 ~p~lllLDEPt~~LD~~ 185 (264)
T PRK14243 169 QPEVILMDEPCSALDPI 185 (264)
T ss_pred CCCEEEEeCCCccCCHH
Confidence 99999999999999654
No 390
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.12 E-value=5.1e-11 Score=114.72 Aligned_cols=140 Identities=14% Similarity=0.033 Sum_probs=94.7
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCC--CCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDS--FYHN 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~--~~~~ 88 (303)
+++++++++|.+. +....++..+.+|.+++|+|+||||||||++.|++.+.+. | +.+++++. ++..
T Consensus 325 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 325 IEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 402 (556)
T ss_pred EEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCC
Confidence 6678888877432 4677788889999999999999999999999999987642 1 34555542 4445
Q ss_pred CCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++..+.......... .. .........+..+.... ......+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 403 ~tv~e~l~~~~~~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 479 (556)
T PRK11819 403 KTVWEEISGGLDIIK-VG-NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479 (556)
T ss_pred CCHHHHHHhhccccc-cc-ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 565554433211111 00 11222344566554421 2234568888888887777888999999999999999764
No 391
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.5e-11 Score=113.56 Aligned_cols=120 Identities=7% Similarity=0.065 Sum_probs=74.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------------------CC-CCCCCCHHHHHhhcccC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------------------DS-FYHNLTEQELARVHEYN 101 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------------------D~-~~~~~~~~~~~~~~~~~ 101 (303)
+.+|.+++|+|+||||||||++.|++.+.+. |.+.++. +. ++...+..+......+.
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 100 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP 100 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc
Confidence 9999999999999999999999999987642 3333333 21 11222332222211110
Q ss_pred CCC---CCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDH---PDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~---p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+.. ......+.+.+.++.+...... ....+|.++.+++..+.+.+.+++++|+|+|++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 101 TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 000 0000112344455555443222 23467888888888778888999999999999999985
No 392
>PRK03839 putative kinase; Provisional
Probab=99.12 E-value=1.1e-09 Score=90.10 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=63.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
.|.|+|++||||||+++.|++.+ ++.+++.|+++.... ... .+.......+..+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~---~~~~id~d~~~~~~~------~~~-~~~~~~~~~~~~l~~~~~~~--------- 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL---GYEYVDLTEFALKKG------IGE-EKDDEMEIDFDKLAYFIEEE--------- 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEehhhhhhhcC------Ccc-cCChhhhcCHHHHHHHHHHh---------
Confidence 68999999999999999999998 688999988763211 111 11111111222222222110
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhC
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
.. ...+|+||....+ ...|++||++++.++..+|+..|.
T Consensus 63 ----------------~~-~~~vIidG~~~~l-----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 ----------------FK-EKNVVLDGHLSHL-----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ----------------cc-CCCEEEEeccccc-----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 01 1226778754322 246899999999999999998774
No 393
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=6.2e-11 Score=113.64 Aligned_cols=137 Identities=14% Similarity=0.178 Sum_probs=95.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCC---CCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDS---FYH 87 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~---~~~ 87 (303)
++++|++++|.+ .+....++.++.+|.+++|.|+||||||||++.|++.+.+. | +.+++++. +..
T Consensus 320 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 320 LEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred EEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCC
Confidence 667888887753 24677788889999999999999999999999999987642 2 34455543 333
Q ss_pred CCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 88 NLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 88 ~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+..+.... +..+ ..+.+.+.+.+..+... . ......+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 398 ~~t~~~~~~~----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 398 DLTLFDWMSQ----WRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred CCcHHHHHHH----hccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 3454443221 1111 12334556667766542 1 2234567888888888778888999999999999999765
No 394
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.12 E-value=2.4e-11 Score=113.11 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=83.8
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---HhhcccCCCCCCc------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---ARVHEYNFDHPDA------ 107 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~~~~~~~f~~p~~------ 107 (303)
+.++++.+.+|.++||.|.|||||||+++.|++.+.|. |...++..++ .++..+. .......|++|.+
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~--~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL--DLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc--ccccchhhhhhhheEEEEeCcccccCccc
Confidence 44455559999999999999999999999999999774 4455555442 1222211 1223445555432
Q ss_pred ---------------ccH----HHHHHHHHHhhCCCcc--cc-CcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ---------------FDT----EKLLSSMEKLRHGQAV--DI-PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ---------------~d~----~~l~~~l~~l~~~~~v--~~-p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... +++.+.++....+... .+ ..+|.++.+|..++.+...+++++|+|+|+..+|+-
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 001 1233444544444322 23 368999999988888889999999999999998764
No 395
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.12 E-value=5.3e-10 Score=91.12 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..|.|+|.+||||||+++.|++.+ ++.+++.|.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL---GYRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CCCEEEccHHH
Confidence 358889999999999999999998 67888988755
No 396
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.11 E-value=6.4e-11 Score=125.92 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=98.4
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE------------------
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV------------------ 80 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l------------------ 80 (303)
.++++|++.+|++...+.+...+..+.+|.+++|.|+|||||||+++.|++.+.|. |-+.+
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 57789999988643345788888899999999999999999999999999998652 22333
Q ss_pred -eCC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEec
Q 022073 81 -NQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (303)
Q Consensus 81 -~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg 156 (303)
.++ .++..++..+...+.....+.+..-..+...+.++.+..... .....+|.++.+|+..+.+.+.+++++++||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 332 223334444433322111111111112334455665544332 2345688899999888888889999999999
Q ss_pred cccccchhh
Q 022073 157 ILVFHDSRV 165 (303)
Q Consensus 157 ~~~~~d~~~ 165 (303)
|++++|+..
T Consensus 1088 PTSGLDp~s 1096 (2272)
T TIGR01257 1088 PTSGVDPYS 1096 (2272)
T ss_pred CCcCCCHHH
Confidence 999999853
No 397
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1e-10 Score=102.17 Aligned_cols=146 Identities=10% Similarity=0.094 Sum_probs=85.5
Q ss_pred ccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC---C
Q 022073 17 HFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY---H 87 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~---~ 87 (303)
+-+.+.+++++++|+.. +.....+..+.++.+++|+|+||||||||++.|++.+.+ .|-+.++..... .
T Consensus 13 ~~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CCceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 34446677777777532 466677777999999999999999999999999998753 234444432210 0
Q ss_pred CCCHHHHHhhcccCCCCCCccc----------------------HHHHHHHHHHhhCCC------ccccCcccCCCCccC
Q 022073 88 NLTEQELARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQ------AVDIPNYDFKSYKNN 139 (303)
Q Consensus 88 ~~~~~~~~~~~~~~f~~p~~~d----------------------~~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~ 139 (303)
............+.++.+..+. .+.....+..+.... ......+|.++.+++
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 0111111111112222221111 112222232222110 112235677777777
Q ss_pred CCCceecCCCcEEEEeccccccchh
Q 022073 140 VFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 140 ~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+.+.+++++++|+|++++|+.
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~ 195 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPI 195 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHH
Confidence 7777778999999999999999654
No 398
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.11 E-value=4e-11 Score=114.14 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCC----------------------CCCCCHHHHHhhcccC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF----------------------YHNLTEQELARVHEYN 101 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~----------------------~~~~~~~~~~~~~~~~ 101 (303)
+.+|.+++|+|+||||||||++.|++.+++ .|.+.+...+. +..++..+........
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (501)
T PRK11288 27 CRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLP 106 (501)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccc
Confidence 999999999999999999999999998764 23333332211 1122222222211100
Q ss_pred CCCCCccc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.. ....+ .+.+.+.+..+...... ....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 107 ~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 107 HK-GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred cc-cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 00 00011 12344556655443222 23467888888887778888999999999999999985
No 399
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.11 E-value=3.6e-11 Score=114.23 Aligned_cols=142 Identities=8% Similarity=0.045 Sum_probs=88.4
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCCC---------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNL--------- 89 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~~~~--------- 89 (303)
++++|++++|++ .+.+..++..+.+|.+++|.|+||||||||++.|++.+++ .|-+.+.........
T Consensus 261 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 261 IVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 667888887743 2366778888999999999999999999999999997653 354544432211000
Q ss_pred ---------------CHHHHHhhccc----CCCCCCcccHHHHHHHHHHhhCCC-cc--ccCcccCCCCccCCCCceecC
Q 022073 90 ---------------TEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 90 ---------------~~~~~~~~~~~----~f~~p~~~d~~~l~~~l~~l~~~~-~v--~~p~~~~~~~~~~~~~~~~~~ 147 (303)
+..+....... .+........+...+.++.+.... .. ....+|.++.+|+..+.+.+.
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 00110000000 000000001123445555554433 22 234678888888877788889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++++|+|++++|+.
T Consensus 419 ~p~lllLDEPt~gLD~~ 435 (490)
T PRK10938 419 HPTLLILDEPLQGLDPL 435 (490)
T ss_pred CCCEEEEcCccccCCHH
Confidence 99999999999999654
No 400
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.11 E-value=5.7e-11 Score=116.06 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=94.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCC--CCCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQD--SFYHN 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D--~~~~~ 88 (303)
+.++|++++|.+ .+....++..+.+|.++||+|+||||||||++.|++.+.+. | +.+++++ .++..
T Consensus 320 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 320 FEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPE 397 (635)
T ss_pred EEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCC
Confidence 567888887743 24677788889999999999999999999999999987642 2 3344443 23444
Q ss_pred CCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC-Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~-~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.+..+........+. ... ....+...+..+... ... ....+|.++.+|+..+.+.+.+++++|+|+|++++|...
T Consensus 398 ~tv~e~l~~~~~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 398 KTVMDNLAEGKQEVM-VNG-RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCHHHHHHhhccccc-ccc-hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 455444332211110 000 123445556655442 112 334688888888877777889999999999999999753
No 401
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=6.9e-11 Score=103.91 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=85.1
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------EEEEeCCCCCCCCCHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVLVNQDSFYHNLTEQ 92 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------~~~l~~D~~~~~~~~~ 92 (303)
++++++++. ..+.+..++..+.+|.+++|+|+||||||||++.|++.+++. | +.+++++.+....+..
T Consensus 40 l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~ 115 (282)
T cd03291 40 LFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIK 115 (282)
T ss_pred EEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHH
Confidence 667777773 234677777889999999999999999999999999988653 2 4566666544333433
Q ss_pred HHHhhcccCCCCCCcccHHH------HHHHHHHhhCCCc--c--ccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 93 ELARVHEYNFDHPDAFDTEK------LLSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~------l~~~l~~l~~~~~--v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+....... +. ...... +.+.+..+..+.. + ....+|.++.+++..+.+.+.+++++|+|+|++++|
T Consensus 116 enl~~~~~-~~---~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 116 ENIIFGVS-YD---EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred HHhhcccc-cC---HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 33222110 00 000010 1111111111110 1 123577788888777777788999999999999997
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 192 ~~ 193 (282)
T cd03291 192 VF 193 (282)
T ss_pred HH
Confidence 64
No 402
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.10 E-value=1.8e-10 Score=98.16 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------EEEEeCCCCC---CCCCHHHHHhhccc----C
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------VVLVNQDSFY---HNLTEQELARVHEY----N 101 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------~~~l~~D~~~---~~~~~~~~~~~~~~----~ 101 (303)
+.+|.+++|.|+||||||||++.|++.+.+. | +.++.++..+ ...+..+....... .
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 6788999999999999999999999987642 2 3333333211 11233332222110 0
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+..+...+.+.+.+.++.+..... .....+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111111222345555665544332 233467888888887778888999999999999999654
No 403
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.10 E-value=1.7e-10 Score=92.18 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=29.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
|.|+|++||||||+++.|++.+ ++.+++.|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLPFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEEchHHH
Confidence 7899999999999999999998 67788888765
No 404
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=4.5e-11 Score=96.09 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~ 123 (303)
+.++.+++|+|+||||||||++.|++.+++. +-+.++....-. ...........
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~------------------------ 76 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-LPLEELRRRIG------------------------ 76 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-CCHHHHHhceE------------------------
Confidence 8999999999999999999999999987642 334443322110 00001111111
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+|.++.+++..+.+.+.+++++++|+|+.++|..
T Consensus 77 ---~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 77 ---YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred ---EEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 11226777777766666777889999999999998543
No 405
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.8e-11 Score=113.35 Aligned_cols=120 Identities=12% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE---------EEEeCCC-CCCCCCHHHHHhhcc-----------cCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------VLVNQDS-FYHNLTEQELARVHE-----------YNF 102 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~---------~~l~~D~-~~~~~~~~~~~~~~~-----------~~f 102 (303)
+.+|.+++|+|+||||||||++.|++.+++. |- .++.++. ++...+..+...... ..+
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 103 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY 103 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988642 22 2333332 223344433322110 000
Q ss_pred CCCC--------------------ccc-HHHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 103 DHPD--------------------AFD-TEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 103 ~~p~--------------------~~d-~~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
..+. .++ ...+.+.+..+..... .....+|.++.+|+..+.+.+.+++++++|+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt 183 (530)
T PRK15064 104 ALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPT 183 (530)
T ss_pred cccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0000 011 1234455555544321 123468888888888777888999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+++|+.
T Consensus 184 ~~LD~~ 189 (530)
T PRK15064 184 NNLDIN 189 (530)
T ss_pred cccCHH
Confidence 999985
No 406
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.08 E-value=7e-11 Score=112.49 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=89.3
Q ss_pred ccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC-------------
Q 022073 21 FHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS------------- 84 (303)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~------------- 84 (303)
++++|++++|... ..+....++..+.+|.+++|+|+||||||||++.|++.+.+ .|-+.+...+
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 5567777766321 22456677777999999999999999999999999999863 3444443321
Q ss_pred ------------CCCCCCHHHHHhhccc-CCCCCCccc----HHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCce
Q 022073 85 ------------FYHNLTEQELARVHEY-NFDHPDAFD----TEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 85 ------------~~~~~~~~~~~~~~~~-~f~~p~~~d----~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~ 144 (303)
++..++..+...+... .+......+ .+.+.+.++.+.... ......+|.++.+|+..+.+
T Consensus 338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence 1111222222111100 000000011 223455666665432 22334688888888887778
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++++|+.
T Consensus 418 l~~~p~lllLDEPt~~LD~~ 437 (500)
T TIGR02633 418 LLTNPRVLILDEPTRGVDVG 437 (500)
T ss_pred HhhCCCEEEEcCCCCCcCHh
Confidence 88899999999999998654
No 407
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.08 E-value=9.4e-10 Score=88.52 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=90.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
+|.++.|+||||+|||||+++|.+..+ --+.+|... +.. ++-+. -..|+| .+.+.+.+. +..++-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~TT--R~p--R~gEv~G~dY~F-----vs~~EF~~~---i~~~~f 68 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATT--RKP--RPGEVDGVDYFF-----VTEEEFEEL---IERDEF 68 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEecc--CCC--CCCCcCCceeEe-----CCHHHHHHH---HhcCCc
Confidence 689999999999999999999998762 224444321 000 00111 112333 223333333 333443
Q ss_pred cccCcccCCCCccC-CCCceecCCCcEEEEeccccccchhhhhhc-C-eEEEEecChHHHHHHHHhhCccccCCCHHHHH
Q 022073 126 VDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (303)
Q Consensus 126 v~~p~~~~~~~~~~-~~~~~~~~~~~vvildg~~~~~d~~~~~~~-d-~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~ 202 (303)
+.+..|..+-..-. .........+.-+|+|--..+. ..+++.+ + ..||+.+|....++|++.+.+.+....+...+
T Consensus 69 LE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa-~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl 147 (191)
T COG0194 69 LEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGA-LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRL 147 (191)
T ss_pred EEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHH-HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence 43333322211111 0111223344556666655553 3344433 4 67999999999999988775433222222222
Q ss_pred HHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 203 ~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
........ .....|++|.|+ +-+.+++.+...|.
T Consensus 148 ~~a~~Ei~---------~~~~fdyvivNd-d~e~a~~~l~~ii~ 181 (191)
T COG0194 148 ENAKKEIS---------HADEFDYVIVND-DLEKALEELKSIIL 181 (191)
T ss_pred HHHHHHHH---------HHHhCCEEEECc-cHHHHHHHHHHHHH
Confidence 22222111 134589999887 55556655555443
No 408
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.08 E-value=2.9e-09 Score=84.80 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=71.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccccC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p 129 (303)
+|.|+|++||||||+++.|++.+ +..+++.|.+........ ......+... +.+.....+.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~~~~i~~D~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~------- 65 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---GAPFIDGDDLHPPANIAK--MAAGIPLNDE---DRWPWLQALTDALL------- 65 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---CCEEEeCcccccHHHHHH--HHcCCCCCcc---chhhHHHHHHHHHH-------
Confidence 57899999999999999999987 678899998875322111 1111111111 01111111110000
Q ss_pred cccCCCCccCCCCceecCCCcEEEEecccccc--chhhhhhc----CeEEEEecChHHHHHHHHhhCccccCCCHHHHHH
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFH--DSRVRELM----NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~--d~~~~~~~----d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 203 (303)
.........+|++..+... ...+...+ -..||+++|.+++.+|...|... ......+..
T Consensus 66 -------------~~l~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~ 130 (150)
T cd02021 66 -------------AKLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGH--FMPADLLDS 130 (150)
T ss_pred -------------HHHHhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccC--CCCHHHHHH
Confidence 0000122235556544321 11122221 25899999999999999988633 233556666
Q ss_pred HHhhccccc
Q 022073 204 QYSKFVKPA 212 (303)
Q Consensus 204 ~~~~~~~p~ 212 (303)
++.....|.
T Consensus 131 ~~~~~~~p~ 139 (150)
T cd02021 131 QFETLEPPG 139 (150)
T ss_pred HHHHhcCCC
Confidence 666555443
No 409
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.5e-10 Score=89.71 Aligned_cols=140 Identities=17% Similarity=0.229 Sum_probs=90.9
Q ss_pred hhccCC-Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC-CC
Q 022073 9 MIEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-DS 84 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~-D~ 84 (303)
++.++. ++.|++.. ++++|| + +-++.+.||.|.||||||||+++|+.++.|. +.+...+ +.
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF-----~----------l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~ 70 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSF-----D----------LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDG 70 (258)
T ss_pred ceeehhhhhhhCCCcCccccce-----e----------ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCC
Confidence 344555 77777744 699999 8 8999999999999999999999999999764 4444444 22
Q ss_pred CCC---CCCHHHHHhh--cccCC--CCCCc---------------------cc----HHHHHHHHHHhhCCCc-c-ccC-
Q 022073 85 FYH---NLTEQELARV--HEYNF--DHPDA---------------------FD----TEKLLSSMEKLRHGQA-V-DIP- 129 (303)
Q Consensus 85 ~~~---~~~~~~~~~~--~~~~f--~~p~~---------------------~d----~~~l~~~l~~l~~~~~-v-~~p- 129 (303)
-.. .++..+...+ ..+.| ++|.. -. .+...++|++...... + +.|
T Consensus 71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Pr 150 (258)
T COG4107 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPR 150 (258)
T ss_pred CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccc
Confidence 111 1333333322 22222 22210 00 1233445555443321 2 334
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
.|+.++.+|+.++...+..+.++++|+|+.++|.
T Consensus 151 tFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDV 184 (258)
T COG4107 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184 (258)
T ss_pred ccchHHHHHHHHHHHhccCCceEEecCCCCCcch
Confidence 5889999998887888899999999999999853
No 410
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.08 E-value=1.4e-09 Score=89.59 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=30.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|.|.|++||||||+|+.|++.+ ++.+++.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~~~~is~~d~l 34 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---GFTHLSAGDLL 34 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---CCeEEECChHH
Confidence 58999999999999999999998 68899987766
No 411
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.08 E-value=7.6e-11 Score=125.37 Aligned_cols=146 Identities=16% Similarity=0.052 Sum_probs=94.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------------------EEEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------------------VVLV 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-------------------~~~l 80 (303)
+.++|++.+|.+...+.+..++..+.+|.++||.|+|||||||+++.|++.+.+. | +.++
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEE
Confidence 5567777777543334667777779999999999999999999999999987542 2 2233
Q ss_pred eCC-CCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC--ccccCcccCCCCccCCCCceecCCCcEEEEecc
Q 022073 81 NQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (303)
Q Consensus 81 ~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~ 157 (303)
.++ .++..++..+...+.....+.+.....+...+.++.+.... +.....+|.++.+|+..+.+.+.+++++++|||
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 332 33344555544332111111111111122334455444322 223457899999998888888899999999999
Q ss_pred ccccchhhh
Q 022073 158 LVFHDSRVR 166 (303)
Q Consensus 158 ~~~~d~~~~ 166 (303)
++++|+..+
T Consensus 2098 TsGLDp~sr 2106 (2272)
T TIGR01257 2098 TTGMDPQAR 2106 (2272)
T ss_pred CCCCCHHHH
Confidence 999998643
No 412
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.08 E-value=4.5e-11 Score=113.81 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=77.9
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe---------------------CCC----CCCCCCH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN---------------------QDS----FYHNLTE 91 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~---------------------~D~----~~~~~~~ 91 (303)
+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++ ++. ++..++.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv 347 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSV 347 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcH
Confidence 44445559999999999999999999999999987642 333332 221 1222333
Q ss_pred HHHHhhcccC-CCC-----CCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 92 QELARVHEYN-FDH-----PDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 92 ~~~~~~~~~~-f~~-----p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
.+...+.... +.. ......+...+.+..+... . ......+|.++.+|+..+.+.+.+++++++|||++++|
T Consensus 348 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD 427 (501)
T PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427 (501)
T ss_pred HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 3322211100 000 0000122344556665442 2 22334688888888888788889999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 428 ~~ 429 (501)
T PRK10762 428 VG 429 (501)
T ss_pred Hh
Confidence 54
No 413
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.06 E-value=7.6e-10 Score=98.71 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=34.3
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.....++..|+|+|.+||||||+++.|++.+ ++.+++.|..
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D~~ 167 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELNRE 167 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHHHH
Confidence 3446778899999999999999999999998 6777777643
No 414
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.8e-10 Score=99.85 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=68.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CCCEEEEeCCCCCCC-CCHHHHHhhcccCCCCCCc----------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLVNQDSFYHN-LTEQELARVHEYNFDHPDA---------- 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~------~~~~~~l~~D~~~~~-~~~~~~~~~~~~~f~~p~~---------- 107 (303)
+.++.+++|.|+||||||||++.|++.+. ..|-+.++..+.... ...........+.++.+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~ 105 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVA 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHH
Confidence 99999999999999999999999998753 124344433221100 0011111111111111111
Q ss_pred --------ccH----HHHHHHHHHhhCCC------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 --------FDT----EKLLSSMEKLRHGQ------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 --------~d~----~~l~~~l~~l~~~~------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+. ..+.+.++.+.... ......+|.++.+++..+.+.+.+++++++|+|++++|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~ 180 (250)
T PRK14266 106 YGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180 (250)
T ss_pred hHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHH
Confidence 111 11222233322110 1123457778888877777788999999999999999654
No 415
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.06 E-value=1.4e-10 Score=122.87 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=102.6
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCH
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTE 91 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~~~~~~ 91 (303)
.++++|++++|++...+.+..++..+++|.+++|+|++|||||||++.|.+.+++. .+.+++++.+....+.
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti 715 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSL 715 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcH
Confidence 58889999999765567889999999999999999999999999999999988652 3567888887766677
Q ss_pred HHHHhhcccCCCCCCcccHHHHHH---------HHHHhhCCCc--c--ccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 92 QELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d~~~l~~---------~l~~l~~~~~--v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
.+...++.. ++.+...+ .+..+..|.. + ....+|.++.+|+..+++...+++++++|+|+
T Consensus 716 ~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 716 RENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred HHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 666554321 22222222 2233322321 1 12357888888888888888999999999999
Q ss_pred cccchh
Q 022073 159 VFHDSR 164 (303)
Q Consensus 159 ~~~d~~ 164 (303)
+.+|+.
T Consensus 789 saLD~~ 794 (1522)
T TIGR00957 789 SAVDAH 794 (1522)
T ss_pred cccCHH
Confidence 999875
No 416
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.06 E-value=2.9e-09 Score=88.61 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~ 77 (303)
++|+|.|+.||||||+++.|++.+...+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~ 29 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGY 29 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999965443
No 417
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.06 E-value=3.5e-10 Score=89.77 Aligned_cols=108 Identities=23% Similarity=0.400 Sum_probs=61.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
+|.+|.|+|.+||||||+|+.|.+.|.. ..+.+++.|.+.+.+.. .. .|+.+.-.+.+..+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~-------dl------~fs~~dR~e~~rr~~~-- 65 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA-------DL------GFSKEDREENIRRIAE-- 65 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT-------T--------SSHHHHHHHHHHHHH--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC-------CC------CCCHHHHHHHHHHHHH--
Confidence 4789999999999999999999999863 35788998876543211 11 2333333333333321
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEecccccc--chhhhhhcC----eEEEEecChHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH--DSRVRELMN----MKIFVDTDADVRLAR 185 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~--d~~~~~~~d----~~I~v~~~~~~~~~R 185 (303)
.+........++|+.-...+. ....++.+. +.|||+||.+++.+|
T Consensus 66 ----------------~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 66 ----------------VAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ----------------HHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred ----------------HHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 011122334455555433331 122344333 789999999999666
No 418
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.06 E-value=2.1e-10 Score=109.36 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=76.9
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-------------------------CCCCCCH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-------------------------FYHNLTE 91 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~-------------------------~~~~~~~ 91 (303)
...++..+.+|.+++|.|+||||||||++.|++.+++. |-+.++..+ ++...+.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~ 358 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL 358 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence 34445559999999999999999999999999987642 333333321 1111222
Q ss_pred HHHHhhc---ccCCCCCCcccHHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 92 QELARVH---EYNFDHPDAFDTEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 92 ~~~~~~~---~~~f~~p~~~d~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+..... ...+.....-..+.+.+.+..+... . ......+|.++.+|+..+.+.+.+++++|+|||++++|+.
T Consensus 359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 1111100 0000000000112344556655443 2 2234568889999988878888999999999999999654
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.06 E-value=6.2e-11 Score=96.87 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~ 123 (303)
++++.+++|.|+||||||||++.|++.+.+. |-+.++... ..+.++.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~------------------- 69 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQY------------------- 69 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEccc-------------------
Confidence 8899999999999999999999999988653 333333211 0111110
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+.+|.++.+++..+.+.+.+++++++|+|++.+|+..
T Consensus 70 -----~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 70 -----IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred -----CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 1167777777777777788999999999999997653
No 420
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.05 E-value=2.5e-08 Score=81.60 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=85.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+.+++|+|+|||||||+++.|++.+. ...++.|.+...... .....+..+.....+.+ ...+......
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~~~~--r~~~~g~~~~~~~~~~~---~~~~~~~~~~---- 70 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPAKNI--DKMSQGIPLTDEDRLPW---LERLNDASYS---- 70 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCHhHH--HHHhcCCCCCcccchHH---HHHHHHHHHH----
Confidence 56899999999999999999999984 468888887532111 11122333332211111 1111111000
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccc-cchhhhhhcC--eEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVF-HDSRVRELMN--MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~-~d~~~~~~~d--~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.. ......+|+...+.- +....++... ..||++++.++..+|+.+|.. ..-..+....|
T Consensus 71 --~~--------------~~~~~g~iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~--~~~~~~vl~~Q 132 (176)
T PRK09825 71 --LY--------------KKNETGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAG--HFMPPDLLQSQ 132 (176)
T ss_pred --HH--------------hcCCCEEEEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccC--CCCCHHHHHHH
Confidence 00 000122233332211 1122222222 678999999999999999964 22355556666
Q ss_pred Hhhccccchhhcccccccccc-EEecCCCCCHHHHHHHHHHHHHH
Q 022073 205 YSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
......|. ....+ ++|+.+.+-...++.+++.+..+
T Consensus 133 ~~~~e~~~--------~~e~~~~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 133 FDALERPC--------ADEHDIARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred HHHcCCCC--------CCcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 65544321 12234 45555544334566666666554
No 421
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.05 E-value=1.5e-10 Score=111.49 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=78.2
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCC-CCCCCCHHHHHhhccc------
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDS-FYHNLTEQELARVHEY------ 100 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~-~~~~~~~~~~~~~~~~------ 100 (303)
...++..+.+|.+++|+|+||||||||++.|++.+.+. | +.++.++. ++..++..+....+..
T Consensus 21 l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~ 100 (552)
T TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDAL 100 (552)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHH
Confidence 33344449999999999999999999999999987542 2 34555553 2334455544322100
Q ss_pred --------CCCCCCc---------------------cc-HHHHHHHHHHhhCCC-ccccCcccCCCCccCCCCceecCCC
Q 022073 101 --------NFDHPDA---------------------FD-TEKLLSSMEKLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPS 149 (303)
Q Consensus 101 --------~f~~p~~---------------------~d-~~~l~~~l~~l~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~ 149 (303)
.+..+.. ++ ...+.+.+..+.... ......+|.++.+|+..+.+.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p 180 (552)
T TIGR03719 101 DRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180 (552)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCC
Confidence 0111100 00 012223333332211 2233467888888887777888999
Q ss_pred cEEEEeccccccchh
Q 022073 150 DVILLEGILVFHDSR 164 (303)
Q Consensus 150 ~vvildg~~~~~d~~ 164 (303)
+++++|+|++.+|+.
T Consensus 181 ~lLLLDEPt~~LD~~ 195 (552)
T TIGR03719 181 DMLLLDEPTNHLDAE 195 (552)
T ss_pred CEEEEcCCCCCCChH
Confidence 999999999999985
No 422
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=2.8e-10 Score=91.02 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=75.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc-----------------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDA----------------- 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~----------------- 107 (303)
..++..++|.|.||||||||+++|++...|..--++-.|.....-.-.-+.+..+..|++|+.
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~ 115 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR 115 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhh
Confidence 999999999999999999999999999987543333333222111111223344445555542
Q ss_pred ----ccH----HHHHHHHHHhhC---CCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 ----FDT----EKLLSSMEKLRH---GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ----~d~----~~l~~~l~~l~~---~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
++. .+..++|+.+.. ..+......+.++++|+..+++.+-.++++|.|+.++.+|..
T Consensus 116 l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~s 183 (267)
T COG4167 116 LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS 183 (267)
T ss_pred hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHH
Confidence 111 223334443322 112233346778888887777788899999999999988643
No 423
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.5e-10 Score=110.24 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=79.2
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC-------------------------CCCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS-------------------------FYHNLT 90 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~-------------------------~~~~~~ 90 (303)
....++.++.+|.+++|+|+||||||||++.|++.+++. |.+.++..+ ++...+
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 445555559999999999999999999999999987643 334443221 122222
Q ss_pred HHHHHhhcccCCCC------CCcccHHHHHHHHHHhhCC-Cc--cccCcccCCCCccCCCCceecCCCcEEEEecccccc
Q 022073 91 EQELARVHEYNFDH------PDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH 161 (303)
Q Consensus 91 ~~~~~~~~~~~f~~------p~~~d~~~l~~~l~~l~~~-~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~ 161 (303)
..+....+...... +...+.+...+.+..+... .. .....+|.++.+|+..+.+.+.+++++|+|||++++
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 22221111000000 0001123345566666542 22 233467888888888878888999999999999999
Q ss_pred chh
Q 022073 162 DSR 164 (303)
Q Consensus 162 d~~ 164 (303)
|..
T Consensus 428 D~~ 430 (501)
T PRK11288 428 DVG 430 (501)
T ss_pred CHh
Confidence 654
No 424
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.04 E-value=6.4e-11 Score=110.32 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=93.0
Q ss_pred hhccCC-Ccccccc-----cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-----CE
Q 022073 9 MIEASS-GVHFSGF-----HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----RV 77 (303)
Q Consensus 9 ~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-----~~ 77 (303)
+++.++ ++.|... -++|+|| + +.+|.++||.|.|||||||++..|.+.++.. |-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf-----~----------v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~ 69 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSF-----E----------VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE 69 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceE-----E----------ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceE
Confidence 455566 6666543 2578888 7 9999999999999999999999999998754 33
Q ss_pred EEEeCCCCCCCCCHHHHHhh----cccCCCCCC-------------------------cccHHHHHHHHHHhhCCCcc--
Q 022073 78 VLVNQDSFYHNLTEQELARV----HEYNFDHPD-------------------------AFDTEKLLSSMEKLRHGQAV-- 126 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~----~~~~f~~p~-------------------------~~d~~~l~~~l~~l~~~~~v-- 126 (303)
+.++..+.. .++..+.... ..+.|++|- ....++..+.|+.+......
T Consensus 70 I~~~g~dl~-~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 70 VILDGRDLL-GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred EEECCcchh-cCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh
Confidence 444443322 2344333211 123344431 11223344455555443322
Q ss_pred -ccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 127 -DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 127 -~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+| .+|.++.||+.++.+...+++++|+|+|+..+|..
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt 188 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence 144 68999999998888888999999999999999764
No 425
>PLN03073 ABC transporter F family; Provisional
Probab=99.04 E-value=2.3e-10 Score=112.53 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=92.5
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCCCCCCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDSFYHNLT 90 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~~~~~~~ 90 (303)
+++++++++|++. .+....++..+.++.+++|+|+||||||||++.|++.+++. | +.+++++.+ ..++
T Consensus 509 L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~~l~ 586 (718)
T PLN03073 509 ISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-DGLD 586 (718)
T ss_pred EEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-ccCC
Confidence 6678999988432 24677788889999999999999999999999999988653 2 334444431 1111
Q ss_pred HHH--HHhhcccCCCCCCcccHHHHHHHHHHhhCCC-c--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQE--LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~--~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... ...... .+ +. ...+.+...|..+.... . .....+|.++.+|+..+.+.+.+++++|+|+|++++|+.
T Consensus 587 ~~~~~~~~~~~-~~--~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~ 661 (718)
T PLN03073 587 LSSNPLLYMMR-CF--PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD 661 (718)
T ss_pred cchhHHHHHHH-hc--CC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 111 111111 01 11 23345566777665532 1 233467888888887777888999999999999999764
No 426
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.04 E-value=7e-11 Score=94.14 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=90.0
Q ss_pred hccCC-Ccccccccc-cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC----
Q 022073 10 IEASS-GVHFSGFHM-DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---- 82 (303)
Q Consensus 10 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---- 82 (303)
+++++ .+.||+-.. +++|+ + ...|-+|.|+|.|||||||+++++.=.-.|. +...+..
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL-----~----------A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~ 71 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSL-----Q----------ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71 (256)
T ss_pred eehhHHHhhcccchhhcceee-----e----------cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEE
Confidence 34556 888888664 99999 6 7788899999999999999999996544432 3333333
Q ss_pred -----CCCCCCCCHHHHHhh---cccCCCCCCcc-----------------------cHHHHHHHHHHhhCCCc-cccC-
Q 022073 83 -----DSFYHNLTEQELARV---HEYNFDHPDAF-----------------------DTEKLLSSMEKLRHGQA-VDIP- 129 (303)
Q Consensus 83 -----D~~~~~~~~~~~~~~---~~~~f~~p~~~-----------------------d~~~l~~~l~~l~~~~~-v~~p- 129 (303)
|.-.......+...+ -...|++-+-| ..+.....|......+. -.+|
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~ 151 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA 151 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc
Confidence 222222333333222 12233321111 12333444544433222 2455
Q ss_pred cccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
.++.++.+|..++++..-.+.+.++|+|+..+||++-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElV 188 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHH
Confidence 4688889998888888889999999999999998753
No 427
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.04 E-value=1.4e-10 Score=100.52 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=78.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHH--hCC-CCEEEEeCCCC------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ--LHD-QRVVLVNQDSF------------ 85 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~--l~~-~~~~~l~~D~~------------ 85 (303)
+++++++++|.+ .+....++.++.+|.+++|+|+||||||||++.|++. +++ .|-+.++..+.
T Consensus 8 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 8 LEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred EEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 344445444432 1244444455999999999999999999999999996 232 23333332111
Q ss_pred ----------CCCCCHHHHHhhcccC---CCCCCccc----HHHHHHHHHHhhCCC-cc--ccC-cccCCCCccCCCCce
Q 022073 86 ----------YHNLTEQELARVHEYN---FDHPDAFD----TEKLLSSMEKLRHGQ-AV--DIP-NYDFKSYKNNVFPAR 144 (303)
Q Consensus 86 ----------~~~~~~~~~~~~~~~~---f~~p~~~d----~~~l~~~l~~l~~~~-~v--~~p-~~~~~~~~~~~~~~~ 144 (303)
+...+..+........ +......+ .+.+.+.+..+.... .. ... .+|.++.+++..+.+
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 165 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM 165 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence 1111111211110000 00000011 122334454444321 11 222 378888888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|+|++++|+.
T Consensus 166 l~~~p~llllDEPt~~LD~~ 185 (252)
T CHL00131 166 ALLDSELAILDETDSGLDID 185 (252)
T ss_pred HHcCCCEEEEcCCcccCCHH
Confidence 88999999999999999654
No 428
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.04 E-value=1.1e-10 Score=119.08 Aligned_cols=167 Identities=14% Similarity=0.249 Sum_probs=109.5
Q ss_pred ccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-------------------
Q 022073 17 HFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------- 76 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------- 76 (303)
+=|.++++|++++|++..++++.+++..++++..|||+|..|||||||+.+|-+...+. |
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 44669999999999999989999999999999999999999999999999999988642 3
Q ss_pred -EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc-----------cccCcccCCCCcc--CCCC
Q 022073 77 -VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-----------VDIPNYDFKSYKN--NVFP 142 (303)
Q Consensus 77 -~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~-----------v~~p~~~~~~~~~--~~~~ 142 (303)
+.+|++|.....-|.+ ++.+--+.+..+.+.+.|+.-..... +.-.--+++.++| +..+
T Consensus 1215 rlsIIPQdPvLFsGTvR-------~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVR-------FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred cCeeeCCCCceecCccc-------cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 3444455444222211 12221234555555555543322111 1111124444444 3556
Q ss_pred ceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHh
Q 022073 143 ARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (303)
++.+.+.+++++||.++.. |...|..+++.++.. -.+.++..+.|+..
T Consensus 1288 RALLr~skILvLDEATAsV--------------D~~TD~lIQ~tIR~~--F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASV--------------DPETDALIQKTIREE--FKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHhccCCEEEEecccccC--------------ChHHHHHHHHHHHHH--hcCCeEEEEeeccc
Confidence 7778999999999999987 555666666666542 33445555555543
No 429
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.04 E-value=1.7e-10 Score=94.14 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=68.5
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC-CCCCCCCHHHHHhhcccC
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD-SFYHNLTEQELARVHEYN 101 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D-~~~~~~~~~~~~~~~~~~ 101 (303)
++|+|| + +.++.+++|.|+||||||||++.+.. ..+-+.+... ..+. .. ...
T Consensus 11 l~~isl-----~----------i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~------~~---~~~ 63 (176)
T cd03238 11 LQNLDV-----S----------IPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFS------RN---KLI 63 (176)
T ss_pred ecceEE-----E----------EcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccc------cc---cEE
Confidence 577888 7 99999999999999999999999853 2233333221 1110 00 011
Q ss_pred CCCCCcccHHHHHHHHHHhhCCC---ccccCcccCCCCccCCCCceecCC--CcEEEEeccccccchh
Q 022073 102 FDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNP--SDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d~~~l~~~l~~l~~~~---~v~~p~~~~~~~~~~~~~~~~~~~--~~vvildg~~~~~d~~ 164 (303)
| . .+ .+.+..+.... ......++.++.+++..+.+.+.+ ++++++|+|+..+|+.
T Consensus 64 ~-----~-~q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 64 F-----I-DQ--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred E-----E-hH--HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 1 0 01 34555554332 112345677777777666677788 9999999999998654
No 430
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.03 E-value=2.1e-10 Score=99.55 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE------------EeCCCCCCCCCHHHHH-hh-cccCCCCCCcc--
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL------------VNQDSFYHNLTEQELA-RV-HEYNFDHPDAF-- 108 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~------------l~~D~~~~~~~~~~~~-~~-~~~~f~~p~~~-- 108 (303)
+.++.+++|.|+||||||||++.|++.+.+..-.+ +...+.. ........ .. ..+.++.+..+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ-NYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh-hhhHHhhhcccceeeecchhccCch
Confidence 88999999999999999999999999987643222 1111110 00000000 00 00111111111
Q ss_pred --------------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 109 --------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 109 --------------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
......+.++.+...... ....+|.++.+++..+.+.+.+++++++|+|++.+|+..
T Consensus 102 ~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~ 174 (255)
T cd03236 102 AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174 (255)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 112333444444333222 223467777777777777778999999999999997653
No 431
>PRK14530 adenylate kinase; Provisional
Probab=99.03 E-value=1.5e-09 Score=91.84 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
..|+|.|++||||||+++.|++.+ ++.+++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~---~~~~i~~g~~lr 39 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF---GVEHVTTGDALR 39 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEEeccHHHH
Confidence 479999999999999999999998 678888877663
No 432
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.02 E-value=1.3e-10 Score=103.31 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=80.2
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHH---hhcccCCCCCC----------
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELA---RVHEYNFDHPD---------- 106 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~---~~~~~~f~~p~---------- 106 (303)
+++....++..+||.|.|||||||+..+|.+.+++.|-..+...++. .++..+.. ..-...|++|-
T Consensus 305 ~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~-~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~ 383 (534)
T COG4172 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID-GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG 383 (534)
T ss_pred cceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc-ccChhhhhhhhhhceEEEeCCCCCCCcccCHH
Confidence 33444999999999999999999999999999987655554443332 12222211 11222343331
Q ss_pred -------------cccHHH---HHHHHHHhhCCCcc--ccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 107 -------------AFDTEK---LLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 107 -------------~~d~~~---l~~~l~~l~~~~~v--~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
--..++ ..+.|.+....... .+| .||.++.+|..++.+.+-.+.++++|+|+..+|..
T Consensus 384 qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 384 QIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred HHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 112223 33444444433322 344 68999999988888888999999999999988643
No 433
>PRK14531 adenylate kinase; Provisional
Probab=99.02 E-value=2.5e-09 Score=88.23 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..|.|+|++||||||+++.|++.+ ++.+++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~---g~~~is~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH---GLRHLSTGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCeEecccHH
Confidence 468999999999999999999998 78888887765
No 434
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.7e-10 Score=112.73 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=91.1
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CE---------EEEeCCCC---CC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV---------VLVNQDSF---YH 87 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~---------~~l~~D~~---~~ 87 (303)
+.++|++++|.+ .+....++..+.+|.++||+|+||||||||++.|++.+.+. |- .+++++.. ..
T Consensus 313 l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~ 390 (638)
T PRK10636 313 LKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA 390 (638)
T ss_pred EEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCc
Confidence 567888887743 24677788889999999999999999999999999988652 22 23333321 01
Q ss_pred CCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC-cc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 88 NLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 88 ~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+..+ .+.. + .+ ......+...|..+.... .. ....+|.++.+|+..+...+.+++++|+|+|++++|..
T Consensus 391 ~~~~~~--~~~~--~-~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~ 464 (638)
T PRK10636 391 DESPLQ--HLAR--L-AP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464 (638)
T ss_pred cchHHH--HHHH--h-Cc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 111111 1111 0 01 122344556676665532 22 34567888888887777888999999999999999985
Q ss_pred h
Q 022073 165 V 165 (303)
Q Consensus 165 ~ 165 (303)
.
T Consensus 465 ~ 465 (638)
T PRK10636 465 M 465 (638)
T ss_pred H
Confidence 3
No 435
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=2.1e-10 Score=111.93 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred Ccccccc-cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeC---------C
Q 022073 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ---------D 83 (303)
Q Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~---------D 83 (303)
++.|++. -|+|+|| + +.+|.++||+|+||||||||+++|++.+.+ .|.+.++. +
T Consensus 8 s~~~g~~~~l~~vs~-----~----------i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~ 72 (638)
T PRK10636 8 QIRRGVRVLLDNATA-----T----------INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQE 72 (638)
T ss_pred EEEeCCceeecCcEE-----E----------ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecC
Confidence 4556553 3477777 6 999999999999999999999999998765 23333332 2
Q ss_pred CCCCCCCHHHHHh--------hc-------------cc-----CCCCCCccc-HHHHHHHHHHhhCCC---ccccCcccC
Q 022073 84 SFYHNLTEQELAR--------VH-------------EY-----NFDHPDAFD-TEKLLSSMEKLRHGQ---AVDIPNYDF 133 (303)
Q Consensus 84 ~~~~~~~~~~~~~--------~~-------------~~-----~f~~p~~~d-~~~l~~~l~~l~~~~---~v~~p~~~~ 133 (303)
......+...... +. .+ .+...+.++ ...+...+..+.... ......+|.
T Consensus 73 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg 152 (638)
T PRK10636 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG 152 (638)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH
Confidence 1111112111100 00 00 000000111 234455566655431 223456888
Q ss_pred CCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 134 ~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
++.+|+..+.+.+.+++++++|+|++++|...
T Consensus 153 GerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~ 184 (638)
T PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDA 184 (638)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCcCCHHH
Confidence 88888888788889999999999999999853
No 436
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.01 E-value=1.5e-09 Score=89.11 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.+|+|.|++||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 46899999999999999999999764
No 437
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.01 E-value=3e-09 Score=90.30 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=49.4
Q ss_pred hcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccc-ccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 168 ~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~-~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
.+|++||+++|++.+++|+.+|+... ...+...|.......|.+++.+ +...+++++.+. ++...++.++..|.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~----e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~ 216 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPH----EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIE 216 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCch----hhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHH
Confidence 46999999999999999998886321 1123345666666667766654 344567665543 55667777777665
No 438
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.01 E-value=5.3e-11 Score=116.26 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=81.2
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC---------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD--------- 83 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D--------- 83 (303)
++.|++.. |+|+|| + +.+|.+++|+|+||||||||+++|++.+.+. |.+.+..+
T Consensus 10 s~~~~~~~il~~is~-----~----------i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~ 74 (635)
T PRK11147 10 WLSFSDAPLLDNAEL-----H----------IEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQD 74 (635)
T ss_pred EEEeCCceeEeCcEE-----E----------ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccC
Confidence 55555432 467777 6 9999999999999999999999999987653 33433322
Q ss_pred CCCCC-CCHHHHHh---------------hccc-C-----------------CCCCCccc-HHHHHHHHHHhhCCCcccc
Q 022073 84 SFYHN-LTEQELAR---------------VHEY-N-----------------FDHPDAFD-TEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 84 ~~~~~-~~~~~~~~---------------~~~~-~-----------------f~~p~~~d-~~~l~~~l~~l~~~~~v~~ 128 (303)
..... .+..+... +... . +.....+. ...+.+.+..+........
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 154 (635)
T PRK11147 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAAL 154 (635)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCch
Confidence 11100 11111100 0000 0 00000011 1233444555443322334
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+|.++.+|+..+.+.+.+++++|+|+|++.+|+.
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~ 190 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHH
Confidence 567888888888878888999999999999999985
No 439
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=5.2e-10 Score=105.71 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=91.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------EEEEeCCCCC--CC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------VVLVNQDSFY--HN 88 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------~~~l~~D~~~--~~ 88 (303)
+.++|++++|.+. .+.....+..+.++..|||+|+||+|||||++.|++.+.+. | +.+++++.-. ..
T Consensus 322 l~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~ 400 (530)
T COG0488 322 LEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPD 400 (530)
T ss_pred EEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCcc
Confidence 4568888877554 45677788889999999999999999999999998877543 2 3445554311 11
Q ss_pred CCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC-ccc--cCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 89 LTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AVD--IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-~v~--~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+..+. +... + |+ .....+...|..+.... .+. +..+|.++..|+..+.....++.++|+|+|++.+|..
T Consensus 401 ~t~~d~--l~~~-~--~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~ 473 (530)
T COG0488 401 KTVLEE--LSEG-F--PD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 (530)
T ss_pred CcHHHH--HHhh-C--cc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHH
Confidence 122111 1111 1 11 22556677777766543 333 3457888888876666777899999999999998654
No 440
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=1.7e-09 Score=85.70 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=85.0
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhc----ccCCCC-------
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVH----EYNFDH------- 104 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~----~~~f~~------- 104 (303)
.+.+++..++.+..++|.|+||||||||+-.|++.=.+. +-+.+-..+.. .+....+..+. .+.|+.
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~-~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLH-KLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchh-hcCHHHHHHhhccceeEEEEeeeccccc
Confidence 344444449999999999999999999999999865432 22333332222 23333332221 112211
Q ss_pred --------C-------CcccHHHHHHHHHHhhCCCcc-ccC-cccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 105 --------P-------DAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 105 --------p-------~~~d~~~l~~~l~~l~~~~~v-~~p-~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
| .+-.+....+.|..+..++.. .+| .+|.+..+|+.++++....+++++.|+|+..+|..
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 1 112234567788888888765 445 57899999988888888999999999999988865
No 441
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1e-09 Score=90.90 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=92.2
Q ss_pred Cccccc--ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCCCCCC
Q 022073 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSFYHNL 89 (303)
Q Consensus 15 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~~~~l~~D~~~~~~ 89 (303)
++..++ --++++|+ + ++.+.+.+|.||||||||||+..|.+.-.. .|-+.++..+.. .+
T Consensus 10 hv~v~~~keILkgvnL-----~----------v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~-~l 73 (251)
T COG0396 10 HVEVEGKKEILKGVNL-----T----------VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-EL 73 (251)
T ss_pred EEEecCchhhhcCcce-----e----------EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc-cC
Confidence 444443 34688888 7 999999999999999999999999985321 244566665544 46
Q ss_pred CHHHHHhhccc-CCCCCCccc-------------------------HHHHHHHHHHhhCCCcc-cc---CcccCCCCccC
Q 022073 90 TEQELARVHEY-NFDHPDAFD-------------------------TEKLLSSMEKLRHGQAV-DI---PNYDFKSYKNN 139 (303)
Q Consensus 90 ~~~~~~~~~~~-~f~~p~~~d-------------------------~~~l~~~l~~l~~~~~v-~~---p~~~~~~~~~~ 139 (303)
+..++++.+-+ .|+.|..+. .+.+.+.++.+...... .. --||.+..+|.
T Consensus 74 ~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 74 SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred CHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 77777765532 466554321 11222223333222211 11 13677777876
Q ss_pred CCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhh
Q 022073 140 VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRR 189 (303)
Q Consensus 140 ~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R 189 (303)
...+..+-.++++|+|+|-+++ |.+.-....+.+++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGL--------------DIdalk~V~~~i~~ 189 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGL--------------DIDALKIVAEGINA 189 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCc--------------cHHHHHHHHHHHHH
Confidence 6656667899999999999998 55555555555544
No 442
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.00 E-value=3.6e-10 Score=110.64 Aligned_cols=128 Identities=14% Similarity=0.084 Sum_probs=76.2
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHH----hhcccCCCCCCc----
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELA----RVHEYNFDHPDA---- 107 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~----~~~~~~f~~p~~---- 107 (303)
.....+..+.++.+++|+|+||||||||++.|++.+++. |-+.++..+.. .....+.. ....+.++.+..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~-~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA-TLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcC-cCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 344444459999999999999999999999999998652 33333332211 11111110 011111211111
Q ss_pred ------------------ccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 108 ------------------FDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 108 ------------------~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.......+.++.+...... ....+|.++.+++..+++.+.+++++++|+|+.++|+..
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 1112233444444333222 223577788888777777888999999999999998753
No 443
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.00 E-value=7e-09 Score=86.31 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=26.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
+++|+|.|+.||||||+++.|++.+...|
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999987543
No 444
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.00 E-value=7.4e-09 Score=86.49 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=36.9
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCC
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~ 86 (303)
.....+|.+|+|+|.+||||||+++.|++.+.+. +..+++.|.+.
T Consensus 18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3446788999999999999999999999988543 46888887754
No 445
>PRK14532 adenylate kinase; Provisional
Probab=98.99 E-value=3.3e-09 Score=87.86 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
-|.|.|++||||||+++.|++.+ ++.+++.|+..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~---g~~~is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER---GMVQLSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEEeCcHHHH
Confidence 37889999999999999999998 788999987664
No 446
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1e-09 Score=93.39 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=96.7
Q ss_pred CcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC---CCCC
Q 022073 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY---HNLT 90 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~---~~~~ 90 (303)
..++|+|.+ +++| . ....-+.+|-|+|||||||+.+++++...|. +.+.++..-+. +.+.
T Consensus 7 ~~~lG~~~l-~a~~-----~----------~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~ 70 (352)
T COG4148 7 RQRLGNFAL-DANF-----T----------LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIF 70 (352)
T ss_pred hhhcCceEE-EEec-----c----------CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcc
Confidence 455666666 5666 5 6666799999999999999999999998764 33333332111 1111
Q ss_pred HHHHHhhcccCCCCCC----------------cccHHHHHHHHHHhhCCCcc-ccC-cccCCCCccCCCCceecCCCcEE
Q 022073 91 EQELARVHEYNFDHPD----------------AFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 91 ~~~~~~~~~~~f~~p~----------------~~d~~~l~~~l~~l~~~~~v-~~p-~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
...-...-.|.|++-. ..+.+.+.+.+.-+..+.-. .+| .+|.+..+|+.+..+.+..++++
T Consensus 71 lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LL 150 (352)
T COG4148 71 LPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cChhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCee
Confidence 1111122233333210 11334455555555444322 334 57999999998888999999999
Q ss_pred EEeccccccchh-----------hhhhcCe-EEEEecChHHHHHHHHhh
Q 022073 153 LLEGILVFHDSR-----------VRELMNM-KIFVDTDADVRLARRIRR 189 (303)
Q Consensus 153 ildg~~~~~d~~-----------~~~~~d~-~I~v~~~~~~~~~R~~~R 189 (303)
++|+|++.+|.. +++..++ ++||.=+.+. ..|+..|
T Consensus 151 LmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E-v~RLAd~ 198 (352)
T COG4148 151 LMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE-VLRLADR 198 (352)
T ss_pred eecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH-HHhhhhe
Confidence 999999988742 3344453 6677665554 3454433
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.98 E-value=1.7e-09 Score=74.28 Aligned_cols=27 Identities=37% Similarity=0.823 Sum_probs=23.5
Q ss_pred EEEEeccccccch---hhhhhcCeEEEEec
Q 022073 151 VILLEGILVFHDS---RVRELMNMKIFVDT 177 (303)
Q Consensus 151 vvildg~~~~~d~---~~~~~~d~~I~v~~ 177 (303)
++|+||.....+. .....+|++||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 8999999988666 67889999999997
No 448
>PRK14527 adenylate kinase; Provisional
Probab=98.98 E-value=1.6e-09 Score=89.93 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..++.+|.|.|++||||||+++.|++.+ ++..++.++..
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~---~~~~is~gd~~ 41 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQEL---GLKKLSTGDIL 41 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHh---CCCCCCccHHH
Confidence 4567899999999999999999999988 56777776655
No 449
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.97 E-value=2e-10 Score=109.15 Aligned_cols=140 Identities=10% Similarity=0.109 Sum_probs=84.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------------- 86 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~------------- 86 (303)
++++|+++++ .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++..+..
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 5667777742 23566677779999999999999999999999999987643 34444432211
Q ss_pred ------------CCCCHHHHHhhccc--CCCCCCccc----HHHHHHHHHHhhCC-C--ccccCcccCCCCccCCCCcee
Q 022073 87 ------------HNLTEQELARVHEY--NFDHPDAFD----TEKLLSSMEKLRHG-Q--AVDIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 87 ------------~~~~~~~~~~~~~~--~f~~p~~~d----~~~l~~~l~~l~~~-~--~v~~p~~~~~~~~~~~~~~~~ 145 (303)
...+..+....... .......++ .+...+.+..+... . ......+|.++.+++..+.+.
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 11111100000000 000000011 12234455554432 1 234456788888888887888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|+|++++|+.
T Consensus 407 ~~~p~illLDEPt~gLD~~ 425 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVG 425 (491)
T ss_pred hcCCCEEEEcCCCcccChh
Confidence 8999999999999999654
No 450
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.97 E-value=3.2e-09 Score=87.64 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~~~ 86 (303)
...+|.+|+|+|++||||||+++.|.+.+...+ +.+++.|.+.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 467889999999999999999999999985433 6777877654
No 451
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.97 E-value=4.9e-10 Score=86.81 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=74.3
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------------------CEEEEeCCCCC-CCCCHHHHHhh
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------------------RVVLVNQDSFY-HNLTEQELARV 97 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------------------~~~~l~~D~~~-~~~~~~~~~~~ 97 (303)
.+.++.++.|+.|.||||||||||...+.+.|.+. .+-++-+|++. +.++..+
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~---- 96 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQ---- 96 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccccc----
Confidence 44449999999999999999999999999988642 23344444433 1121111
Q ss_pred cccCCCCCCccc----HHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhh
Q 022073 98 HEYNFDHPDAFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (303)
Q Consensus 98 ~~~~f~~p~~~d----~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~ 167 (303)
+..|.-|.... .......|.+....+.. ....++.++..|+...+..+..++.+++|+|+.-+|..+++
T Consensus 97 -Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 97 -NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred -ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 11222222221 12233344444333322 22346777777776666777899999999999987665543
No 452
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.96 E-value=1.3e-09 Score=102.90 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=103.1
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----------CCEEEEeCCCCCCC
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------QRVVLVNQDSFYHN 88 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----------~~~~~l~~D~~~~~ 88 (303)
..++++|+++.-++.. +.+...+..++.|.-+.|.|+||||||||.+.|++..+- .+..++++-.|.+.
T Consensus 391 ~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 391 HGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469 (604)
T ss_pred ceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence 4688899999444433 567778888999999999999999999999999998862 13577777777765
Q ss_pred CCHHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCCCcc--------ccCcccCCCCccCCCCceecCCCcEEEEecccc
Q 022073 89 LTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHGQAV--------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (303)
Q Consensus 89 ~~~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~~~v--------~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~ 159 (303)
-+..+... |.++. .+..+.+.+.|.+...+.-+ --.+.+.++.+|+..++..+..++++++||.+.
T Consensus 470 GtLre~l~-----YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALC-----YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHh-----CCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 55444332 22222 37788888888877654321 123568888888877777889999999999999
Q ss_pred ccch
Q 022073 160 FHDS 163 (303)
Q Consensus 160 ~~d~ 163 (303)
.+|+
T Consensus 545 ALDe 548 (604)
T COG4178 545 ALDE 548 (604)
T ss_pred ccCh
Confidence 9854
No 453
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.4e-09 Score=81.59 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=77.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHH--HHHHhhCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS--SMEKLRHG 123 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~--~l~~l~~~ 123 (303)
+-+.+|.|.|.+||||||++++|++.| +..+++.|+|++.-..+.... +...++.+.|.|-.-.. ....+..+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l---~~~F~dgDd~Hp~~NveKM~~--GipLnD~DR~pWL~~i~~~~~~~l~~~ 84 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEEL---GLKFIDGDDLHPPANVEKMTQ--GIPLNDDDRWPWLKKIAVELRKALASG 84 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHh---CCcccccccCCCHHHHHHHhc--CCCCCcccccHHHHHHHHHHHHHhhcC
Confidence 345699999999999999999999999 789999999985433322221 22233334444321111 11111111
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccc-c-----------chhhhhhcC-eEEEEecChHHHHHHHHhhC
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF-H-----------DSRVRELMN-MKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~-~-----------d~~~~~~~d-~~I~v~~~~~~~~~R~~~R~ 190 (303)
..+|+....+-- + .+.-.+.+. ..||+.++.++...|+.+|.
T Consensus 85 -------------------------q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 85 -------------------------QGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK 139 (191)
T ss_pred -------------------------CeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc
Confidence 122222211100 0 011111111 45788999999999999997
Q ss_pred ccccCCCHHHHHHHHhhccccc
Q 022073 191 TVEKGRDIATVLDQYSKFVKPA 212 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~p~ 212 (303)
+.. -.......|+...+.|.
T Consensus 140 gHF--Mp~~lleSQf~~LE~p~ 159 (191)
T KOG3354|consen 140 GHF--MPADLLESQFATLEAPD 159 (191)
T ss_pred ccc--CCHHHHHHHHHhccCCC
Confidence 533 33456667888877654
No 454
>PLN02199 shikimate kinase
Probab=98.95 E-value=6.6e-09 Score=90.31 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=89.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC----CHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL----TEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRH 122 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~----~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~ 122 (303)
+..|.|+|.+||||||+++.|++.+ ++.+++.|...... +..++.. .+...| .+.-.+.|..+..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~F-------R~~E~e~L~~L~~ 171 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCDTLIEQAMNGTSVAEIFVHHGENFF-------RGKETDALKKLSS 171 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEEehHHHHHHHhcCCCHHHHHHHhCHHHH-------HHHHHHHHHHHHh
Confidence 6689999999999999999999998 78999999765332 1122111 111111 1111223333211
Q ss_pred CCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhh--cCeEEEEecChHHHHHHHHhhCcccc----CC
Q 022073 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVEK----GR 196 (303)
Q Consensus 123 ~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~--~d~~I~v~~~~~~~~~R~~~R~~~~~----~~ 196 (303)
...+||--|-.+...+..... -..+||+++|.+...+|+.......+ +.
T Consensus 172 -------------------------~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~ 226 (303)
T PLN02199 172 -------------------------RYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDE 226 (303)
T ss_pred -------------------------cCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCC
Confidence 112333333333334433222 25899999999999999874111111 11
Q ss_pred CH------HHHHHHHhhccccchhhccccccccccEEec------------CCCCCH-HHHHHHHHHHHHHhc
Q 022073 197 DI------ATVLDQYSKFVKPAFDDFILPTKKYADIIIP------------RGGDNH-VAIDLIVQHIRTKLG 250 (303)
Q Consensus 197 ~~------~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~------------~~~~~~-~~~~~~v~~i~~~l~ 250 (303)
.. ...+.+......|.|. + ||++|+ .+...+ ..+.++++.+...+.
T Consensus 227 ~~d~~~~~~~~L~~L~~~R~plY~-------~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 227 SGDAYSVAFKRLSAIWDERGEAYT-------N-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHH-------h-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 11 1233444444556663 4 999997 333333 455677777766654
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.95 E-value=2.6e-10 Score=88.05 Aligned_cols=110 Identities=23% Similarity=0.401 Sum_probs=60.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe---CCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVN---QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~---~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
|+|.|.+||||||+++.|++.+. ..+.+ .+..... . ...........++.+.....+..+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 67 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DIIRDIAPEEDIVDS-----I--DDNPDWKENKRLDMEFQDELLDSIIQAI--- 67 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHHHHHHHHTTSHSS-----H--CCHHCCCCCCCSCHHHHHHHHHHHHHHH---
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHHHHHHHhcCCccc-----c--cccchhhhhhhhhhhhHHHHHHHHHHhh---
Confidence 78999999999999999999861 00000 0000000 0 0000111122344554444444433210
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeE-EEEecChHHHHHHHHhhCc
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMK-IFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~-I~v~~~~~~~~~R~~~R~~ 191 (303)
........+|+|++....... ...... |||+||++++.+|+..|..
T Consensus 68 ----------------~~~~~~~~~iid~~~~~~~~~--~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 68 ----------------RRMNKGRNIIIDGILSNLELE--RLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp ----------------HHHTTTSCEEEEESSEEECET--TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred ----------------cccccCCcEEEecccchhccc--ccceeeEEEEECCHHHHHHHHHhCCC
Confidence 023456678999988764322 222233 9999999999999998863
No 456
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.8e-10 Score=98.30 Aligned_cols=174 Identities=14% Similarity=0.240 Sum_probs=110.8
Q ss_pred cccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH
Q 022073 16 VHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL 94 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~ 94 (303)
..-+.+.|++++|.|-+.. |.+.+++...+.+..++|.|++|+||||+++.|-+.+++. |.+.++ +.+.+..+....
T Consensus 258 ~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id-~qdir~vtq~sl 335 (497)
T COG5265 258 VRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID-GQDIRDVTQQSL 335 (497)
T ss_pred cccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEc-chhHHHhHHHHH
Confidence 3344578899999885554 7888899999999999999999999999999999999764 333333 333443433322
Q ss_pred Hhh----------------cccCCCCCCcccHH--------HHHHHHHHhhCCCcccc----CcccCCCCccCCCCceec
Q 022073 95 ARV----------------HEYNFDHPDAFDTE--------KLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRV 146 (303)
Q Consensus 95 ~~~----------------~~~~f~~p~~~d~~--------~l~~~l~~l~~~~~v~~----p~~~~~~~~~~~~~~~~~ 146 (303)
... ....|..|.+-+.+ .....+..+..|-+... =..+++.++|+.+++..+
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il 415 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL 415 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh
Confidence 111 11123444433222 22223333333322211 135888899988888888
Q ss_pred CCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhh
Q 022073 147 NPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSK 207 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 207 (303)
++++++++|+.+..+ |...+..+++-+++ ...+++..-+.|....
T Consensus 416 k~p~il~~deatsal--------------dt~te~~iq~~l~~--~~~~rttlviahrlst 460 (497)
T COG5265 416 KNPPILILDEATSAL--------------DTHTEQAIQAALRE--VSAGRTTLVIAHRLST 460 (497)
T ss_pred cCCCEEEEehhhhHh--------------hhhHHHHHHHHHHH--HhCCCeEEEEeehhhh
Confidence 999999999999987 45555555665554 2345555555555543
No 457
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=2.8e-09 Score=87.27 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~~ 85 (303)
+++.+|+|+|.+||||||+++.|++.+...+ +.+++.|.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4678999999999999999999999986433 677888865
No 458
>PRK13973 thymidylate kinase; Provisional
Probab=98.93 E-value=3.8e-09 Score=89.29 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=29.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
|.+|+|.|..||||||+++.|++.|...+..++..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 68999999999999999999999996555544433
No 459
>PRK13409 putative ATPase RIL; Provisional
Probab=98.93 E-value=3.6e-10 Score=109.04 Aligned_cols=135 Identities=19% Similarity=0.239 Sum_probs=78.8
Q ss_pred CCccccc--ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCC--CC---
Q 022073 14 SGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQD--SF--- 85 (303)
Q Consensus 14 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D--~~--- 85 (303)
.+..|++ |.|.+++. +.+|.++||.|+|||||||+++.|++.+.|. |-+..... ..
T Consensus 79 ~~~~yg~~~~~L~~l~~----------------i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~ 142 (590)
T PRK13409 79 PVHRYGVNGFKLYGLPI----------------PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKR 142 (590)
T ss_pred ceEEecCCceeEecCCc----------------CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHH
Confidence 3566654 45666654 8889999999999999999999999988653 22210000 00
Q ss_pred CCCCCHHHH----Hh--h-----cccCCCCCCcc------------cHHHHHHHHHHhhCCCc--cccCcccCCCCccCC
Q 022073 86 YHNLTEQEL----AR--V-----HEYNFDHPDAF------------DTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNV 140 (303)
Q Consensus 86 ~~~~~~~~~----~~--~-----~~~~f~~p~~~------------d~~~l~~~l~~l~~~~~--v~~p~~~~~~~~~~~ 140 (303)
+........ .. . .++.+..|..+ ..+.+.+.++.+..... .....+|.++.+++.
T Consensus 143 ~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 143 FRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVA 222 (590)
T ss_pred hCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 100000000 00 0 01111111110 11233444555444322 233467888888887
Q ss_pred CCceecCCCcEEEEeccccccchh
Q 022073 141 FPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 141 ~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+.+++++++|+|++++|+.
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~ 246 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIR 246 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHH
Confidence 777788999999999999999765
No 460
>PRK13808 adenylate kinase; Provisional
Probab=98.93 E-value=6.4e-09 Score=92.46 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
.|.|.|++||||||+++.|++.+ ++.+++.++.++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y---gl~~is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY---GIVQLSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceecccHHHH
Confidence 47889999999999999999998 788999887663
No 461
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.92 E-value=7.4e-10 Score=104.68 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=83.4
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----------CEEEEeCC
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------RVVLVNQD 83 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----------~~~~l~~D 83 (303)
+..|++-. |+++|+ . +.++..|||+|.||+|||||++.|++.+.+. .+.+++++
T Consensus 10 s~~~g~~~l~~~~~l-----~----------~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~ 74 (530)
T COG0488 10 SLAYGDRPLLENVSL-----T----------LNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQE 74 (530)
T ss_pred EEeeCCceeecCCcc-----e----------eCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCC
Confidence 55564443 366666 5 9999999999999999999999999988542 35667776
Q ss_pred CCCCC-CCHHHH---------------Hhhcc----c----------CCCCCCcccH-HHHHHHHHHhhCCC-ccccCcc
Q 022073 84 SFYHN-LTEQEL---------------ARVHE----Y----------NFDHPDAFDT-EKLLSSMEKLRHGQ-AVDIPNY 131 (303)
Q Consensus 84 ~~~~~-~~~~~~---------------~~~~~----~----------~f~~p~~~d~-~~l~~~l~~l~~~~-~v~~p~~ 131 (303)
..... .+..+. ..... . .+...+.|+. .+....|..+.... ...+..+
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~L 154 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSL 154 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhc
Confidence 55432 122111 00000 0 0000111221 22333444443333 2344556
Q ss_pred cCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
|.+...|+..+.+...+++++++|+|++.+|..
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~ 187 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHH
Confidence 777777777777888999999999999999864
No 462
>PLN03140 ABC transporter G family member; Provisional
Probab=98.92 E-value=1.7e-09 Score=113.52 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=85.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----C-----------------EEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----R-----------------VVL 79 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----~-----------------~~~ 79 (303)
.-|+|+|+ . +++|.+++|.|+||||||||++.|++.+.+. | +.+
T Consensus 179 ~IL~~vs~-----~----------i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~y 243 (1470)
T PLN03140 179 TILKDASG-----I----------IKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAY 243 (1470)
T ss_pred eeccCCeE-----E----------EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEE
Confidence 34577777 7 9999999999999999999999999987542 2 234
Q ss_pred EeCC-CCCCCCCHHHHHhhcccCC------CCCCcc-------------cHH---------------HHHHHHHHhhCCC
Q 022073 80 VNQD-SFYHNLTEQELARVHEYNF------DHPDAF-------------DTE---------------KLLSSMEKLRHGQ 124 (303)
Q Consensus 80 l~~D-~~~~~~~~~~~~~~~~~~f------~~p~~~-------------d~~---------------~l~~~l~~l~~~~ 124 (303)
+.++ .++..++..+...+..... +.+... +.+ .....++.+....
T Consensus 244 v~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~ 323 (1470)
T PLN03140 244 ISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI 323 (1470)
T ss_pred ecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc
Confidence 4444 3445567666543321100 000000 000 1123445444332
Q ss_pred -------ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 125 -------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 125 -------~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+-....+|.++.+|+..+...+.+++++++|+|+.++|..
T Consensus 324 ~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~ 370 (1470)
T PLN03140 324 CKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 370 (1470)
T ss_pred ccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHH
Confidence 1123568999999998888889999999999999999974
No 463
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.92 E-value=1.2e-09 Score=114.76 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=94.0
Q ss_pred ccccCcccccC--CCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CC-CE----------------E
Q 022073 21 FHMDGLEVRNK--ETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQ-RV----------------V 78 (303)
Q Consensus 21 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~~-~~----------------~ 78 (303)
++++|++++|+ +...+.+..++..+++|.+++|.|+||||||||++.|++.+. +. |- .
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 46788888775 223457888889999999999999999999999999999875 21 22 2
Q ss_pred EEeCC-CCCCCCCHHHHHhhcccCCCCCCccc----HHHHHHHHHHhhCCCc--cccC----cccCCCCccCCCCceecC
Q 022073 79 LVNQD-SFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQA--VDIP----NYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 79 ~l~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d----~~~l~~~l~~l~~~~~--v~~p----~~~~~~~~~~~~~~~~~~ 147 (303)
++.++ .++..++..+........ ..|.... .+...+.++.+..... ..+. .+|.++.+|+.++.+.+.
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l-~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~ 918 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYL-RQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA 918 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence 33433 234445555544332111 1121122 2234455555543221 1111 588888898888778888
Q ss_pred CCc-EEEEeccccccchh
Q 022073 148 PSD-VILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~-vvildg~~~~~d~~ 164 (303)
+++ ++++|||++++|..
T Consensus 919 ~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 919 KPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred CCCeEEEEcCCCCCCCHH
Confidence 996 99999999999975
No 464
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.90 E-value=1.9e-09 Score=105.01 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=80.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----C-----------------EEEEeCCC-CCCCCCHHHHHhhcccC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----R-----------------VVLVNQDS-FYHNLTEQELARVHEYN 101 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----~-----------------~~~l~~D~-~~~~~~~~~~~~~~~~~ 101 (303)
.+++|.+++|.|++|||||||++.|++...+. | +.++.+++ ++..++..+.......
T Consensus 47 ~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~- 125 (617)
T TIGR00955 47 VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH- 125 (617)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHh-
Confidence 39999999999999999999999999987541 2 13344443 3345566665443321
Q ss_pred CCCCCccc----HHHHHHHHHHhhCCC--cccc------CcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 102 FDHPDAFD----TEKLLSSMEKLRHGQ--AVDI------PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 102 f~~p~~~d----~~~l~~~l~~l~~~~--~v~~------p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+..|.... .....+.++.+.... +..+ ..+|.++.+|+..+.+.+.+++++++|+|+.++|..
T Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~ 200 (617)
T TIGR00955 126 LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200 (617)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHH
Confidence 11122222 223455666654322 2222 248889999988888888999999999999999975
No 465
>PRK14528 adenylate kinase; Provisional
Probab=98.90 E-value=6e-09 Score=86.15 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..|.|.|++||||||+++.|++.+ ++.+++.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~is~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQISTGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCeeeCCHHH
Confidence 468999999999999999999998 67788887765
No 466
>PRK13975 thymidylate kinase; Provisional
Probab=98.90 E-value=2.1e-08 Score=83.45 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+++|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999999995
No 467
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.89 E-value=3.6e-10 Score=101.55 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCC-CEE------------------EEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHH
Q 022073 53 VAGGAASGKTTVCDMIIQQLHDQ-RVV------------------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEK 112 (303)
Q Consensus 53 I~G~~GSGKSTla~~L~~~l~~~-~~~------------------~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~ 112 (303)
|.|+||||||||++.|++.+.+. |-+ ++.++. ++..++..+...+.......+..-..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999988652 223 333332 2223333333222211010000001123
Q ss_pred HHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 113 LLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 113 l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|+..
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~ 135 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL 135 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 34455554443222 234578888888877788889999999999999999753
No 468
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=4.1e-09 Score=83.43 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCC--HHHHHhh----ccc-------
Q 022073 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLT--EQELARV----HEY------- 100 (303)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~--~~~~~~~----~~~------- 100 (303)
|+...++.+.+.|..+.+.|+|||||||+++.|-+.+.+. .+.+-+++.+..-.. ..+.... -.|
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 4445555559999999999999999999999999887653 245555565553221 1111100 000
Q ss_pred C---------------CCCCCcccHHHHHHHHHHhhCCCcc---ccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 101 N---------------FDHPDAFDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 101 ~---------------f~~p~~~d~~~l~~~l~~l~~~~~v---~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
. .+.|..-........|..+...+.. ...-||.+..+|+.++...+.+.+++++|+|++.+|
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLD 184 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccccc
Confidence 0 0001111123444566666655433 334689999999988888889999999999999886
Q ss_pred h
Q 022073 163 S 163 (303)
Q Consensus 163 ~ 163 (303)
.
T Consensus 185 a 185 (235)
T COG4778 185 A 185 (235)
T ss_pred c
Confidence 4
No 469
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=8.4e-10 Score=106.83 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=89.3
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CEEEEeCCCC-CCCCCHHHH
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSF-YHNLTEQEL 94 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~~~l~~D~~-~~~~~~~~~ 94 (303)
.+.+++...+++.+.+|.|++|||||||++.|+++.... -..++.+|+. +..+|.+|.
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~Et 124 (613)
T KOG0061|consen 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRET 124 (613)
T ss_pred eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHH
Confidence 455555568999999999999999999999999987531 2356666554 677888876
Q ss_pred HhhcccCCCCCCcccH----HHHHHHHHHhhCC--Ccccc-----CcccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 95 ARVHEYNFDHPDAFDT----EKLLSSMEKLRHG--QAVDI-----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 95 ~~~~~~~f~~p~~~d~----~~l~~~l~~l~~~--~~v~~-----p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
-..... +.-|..... ++..+.+.++... .+..+ ...+.++.+|+.++...+.++.++++|||+.++|.
T Consensus 125 L~f~A~-lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 125 LRFSAL-LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 544322 222443333 3444555555443 11122 35788999998888888899999999999999987
Q ss_pred h
Q 022073 164 R 164 (303)
Q Consensus 164 ~ 164 (303)
.
T Consensus 204 ~ 204 (613)
T KOG0061|consen 204 F 204 (613)
T ss_pred h
Confidence 4
No 470
>PLN03073 ABC transporter F family; Provisional
Probab=98.89 E-value=6.2e-10 Score=109.48 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=86.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh----CCC-CEEEEeCCCCCCCCCHHHH-
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL----HDQ-RVVLVNQDSFYHNLTEQEL- 94 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l----~~~-~~~~l~~D~~~~~~~~~~~- 94 (303)
++++|++++|.+. +....++.++..|..+||+|+||||||||+++|++.. +.. .+.+++++......+..+.
T Consensus 178 I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 178 IHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred EEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 7788888888532 4778888889999999999999999999999999743 211 2345555432222221100
Q ss_pred -----------HhhcccCC--------------------CCCCcccHHH-------------------HHHHHHHhhCCC
Q 022073 95 -----------ARVHEYNF--------------------DHPDAFDTEK-------------------LLSSMEKLRHGQ 124 (303)
Q Consensus 95 -----------~~~~~~~f--------------------~~p~~~d~~~-------------------l~~~l~~l~~~~ 124 (303)
.....+.+ ..+..-...+ +...|..+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 00000000 0010000011 122222222211
Q ss_pred ---ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 125 ---AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 125 ---~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
......+|.++.+|+..+.+.+.+++++++|+|++.+|+.
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~ 378 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 1123467888888887777888999999999999999975
No 471
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.88 E-value=7.3e-08 Score=80.50 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~ 77 (303)
++++|+|.|.-||||||+++.|.+.|...+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~ 32 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI 32 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999987654
No 472
>PRK02496 adk adenylate kinase; Provisional
Probab=98.88 E-value=8.2e-09 Score=85.17 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+.|.|.|++||||||+++.|++.+ ++..++.++..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~---~~~~i~~~~~~ 36 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL---HIPHISTGDIL 36 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCcEEEhHHHH
Confidence 568999999999999999999988 67777776554
No 473
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.88 E-value=1.6e-08 Score=86.10 Aligned_cols=122 Identities=8% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH--HH-HhhcccCCCCCCcccHHHHHHHHHHhh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ--EL-ARVHEYNFDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~--~~-~~~~~~~f~~p~~~d~~~l~~~l~~l~ 121 (303)
...++.|.|.|++||||||+|+.|++.+ ++.+++.++.++..... +. .....+. ........+.+.+.+..-.
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~---g~~~is~gdllr~~~~~~t~lg~~i~~~~-~~G~lvpd~iv~~lv~~~l 78 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKE---NLKHINMGNILREEIKAKTTIGKEIQKVV-TSGNLVPDNLVIAIVKDEI 78 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCcEEECChHHHHHhhcCChHHHHHHHHH-HcCCcCCHHHHHHHHHHHH
Confidence 4556679999999999999999999998 78999999877421000 00 0000000 0000011111111111100
Q ss_pred CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh-h---hhhcCeEEEEecChHHHHHHHHhhC
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-V---RELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~-~---~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
. .........+|+||.--..... . ...++++|+++++.++.++|+..|.
T Consensus 79 ~--------------------~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 79 A--------------------KVTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred H--------------------hhccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 0 0001223568999953222221 1 1357899999999999999999885
No 474
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.87 E-value=4.1e-09 Score=84.81 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=79.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH---HHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCCccccCccc
Q 022073 57 AASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE---QELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYD 132 (303)
Q Consensus 57 ~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~---~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~ 132 (303)
+||||||+++.|++.| +..+++.|.++..... .++.. .+...| ...-.+.+..+.
T Consensus 1 ~GsGKStvg~~lA~~L---~~~fiD~D~~i~~~~g~si~~i~~~~G~~~f-------r~~E~~~l~~l~----------- 59 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL---GRPFIDLDDEIEERTGMSISEIFAEEGEEAF-------RELESEALRELL----------- 59 (158)
T ss_dssp TTSSHHHHHHHHHHHH---TSEEEEHHHHHHHHHTSHHHHHHHHHHHHHH-------HHHHHHHHHHHH-----------
T ss_pred CCCcHHHHHHHHHHHh---CCCccccCHHHHHHhCCcHHHHHHcCChHHH-------HHHHHHHHHHHh-----------
Confidence 6999999999999999 7999999986522111 11110 110001 011112222221
Q ss_pred CCCCccCCCCceecCCCcEEEEeccccccchhhhh---hcCeEEEEecChHHHHHHHHhhCccccCCCHH---HHHHHHh
Q 022073 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVEKGRDIA---TVLDQYS 206 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~---~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~---~~~~~~~ 206 (303)
.....||.-|-.....++..+ ....+|||+++.+...+|+..++....-.... .....+.
T Consensus 60 --------------~~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~ 125 (158)
T PF01202_consen 60 --------------KENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF 125 (158)
T ss_dssp --------------CSSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH
T ss_pred --------------ccCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH
Confidence 111455655544444555433 34589999999999999998776421111221 2223333
Q ss_pred hccccchhhccccccccccEEecCCCCC-HHHHHHHHHHH
Q 022073 207 KFVKPAFDDFILPTKKYADIIIPRGGDN-HVAIDLIVQHI 245 (303)
Q Consensus 207 ~~~~p~~~~~i~~~~~~aD~iI~~~~~~-~~~~~~~v~~i 245 (303)
...|.| .+.+|++++.+... +..++.+++.|
T Consensus 126 -~R~~~Y-------~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 126 -EREPLY-------EQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp -HHHHHH-------HHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred -HHHHHH-------HhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 344555 46799999877655 34555555554
No 475
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=6.9e-08 Score=74.63 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=75.4
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcc-cCCCCCCcccHHHHHHHHHHhhCCCccccCccc
Q 022073 54 AGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYD 132 (303)
Q Consensus 54 ~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~-~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~ 132 (303)
.|.+||||||++..|+..| ++.+++.|++++. ..+.++.+ ....+.+.+ -+|..+... .+
T Consensus 1 MGVsG~GKStvg~~lA~~l---g~~fidGDdlHp~---aNi~KM~~GiPL~DdDR~------pWL~~l~~~------~~- 61 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL---GAKFIDGDDLHPP---ANIEKMSAGIPLNDDDRW------PWLEALGDA------AA- 61 (161)
T ss_pred CCCCccCHHHHHHHHHHHc---CCceecccccCCH---HHHHHHhCCCCCCcchhh------HHHHHHHHH------HH-
Confidence 4899999999999999999 7999999999853 33443332 112211222 233322210 00
Q ss_pred CCCCccCCCCceecCCCcEEEEecccc-ccchhhhhhc-C-eEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhcc
Q 022073 133 FKSYKNNVFPARRVNPSDVILLEGILV-FHDSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~vvildg~~~-~~d~~~~~~~-d-~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (303)
...-.+...||....+- .+...++..+ + ..||++.+.++.++|+..|.+... ....+..|+...+
T Consensus 62 ----------~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM--~~~ll~SQfa~LE 129 (161)
T COG3265 62 ----------SLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFM--PASLLDSQFATLE 129 (161)
T ss_pred ----------HhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCC--CHHHHHHHHHHhc
Confidence 00011122444443331 2223333333 2 458999999999999999965433 3556678888877
Q ss_pred ccch
Q 022073 210 KPAF 213 (303)
Q Consensus 210 ~p~~ 213 (303)
.|.-
T Consensus 130 ~P~~ 133 (161)
T COG3265 130 EPGA 133 (161)
T ss_pred CCCC
Confidence 6543
No 476
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.86 E-value=1.2e-08 Score=86.00 Aligned_cols=115 Identities=14% Similarity=0.196 Sum_probs=64.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHH--HH-hhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE--LA-RVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~--~~-~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
|.|.|++||||||+|+.|++.+ ++.+++.++..+...... .. ....+ .........+.+.+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~---g~~~is~gdllr~~~~~~~~~~~~~~~~-~~~g~~vp~~~~~~l~~~~i~----- 72 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY---GLPHISTGDLLRAEIKAGTPLGKKAKEY-MEKGELVPDEIVNQLVKERLT----- 72 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeehhHHHHHhhccccHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh-----
Confidence 7899999999999999999988 788899877663211000 00 00000 000001111111111111000
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccch--hh---hh-hcCeEEEEecChHHHHHHHHhhC
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RV---RE-LMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~--~~---~~-~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
.......-+|+||.....+. .+ .. .++.+|++++|.+++++|+..|.
T Consensus 73 ----------------~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 73 ----------------QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred ----------------cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 00011346899995433221 11 12 47899999999999999999884
No 477
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.86 E-value=3.4e-08 Score=81.47 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=82.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v 126 (303)
+.+|.|+||+||||+|+++.|.+.++.. ..++.......+.- +. .-..|.|- ..+.+ ...++.+.-+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~---e~-~g~dy~fv-----s~~ef---~~~i~~g~fv 69 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPG---EV-NGVDYHFV-----SREEF---EDDIKSGLFL 69 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCC---Cc-CCceEEEC-----CHHHH---HHHHHcCCeE
Confidence 5689999999999999999999986321 11221111111000 00 00112221 12222 2233344444
Q ss_pred ccCcccC---CCCccCCCCceecCCCcEEEEeccccccchhhhh-hcC-eEEEEecChHH-HHHHHHhhCccccCCCHHH
Q 022073 127 DIPNYDF---KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE-LMN-MKIFVDTDADV-RLARRIRRDTVEKGRDIAT 200 (303)
Q Consensus 127 ~~p~~~~---~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~-~~d-~~I~v~~~~~~-~~~R~~~R~~~~~~~~~~~ 200 (303)
.+..+.. ++.... ....+.....+|+|.-..+. ..+.+ ..+ ++||+.++... ..+|+..|.. .+.+.
T Consensus 70 e~~~~~g~~YGt~~~~--i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~----~~~~~ 142 (184)
T smart00072 70 EWGEYSGNYYGTSKET--IRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRGRGT----ETAER 142 (184)
T ss_pred EEEEEcCcCcccCHHH--HHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC----CCHHH
Confidence 3333322 111110 11223456788888866554 23332 334 88999966555 5555555531 12222
Q ss_pred HHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
+..+.....+ ... .....|.+|.|+ +-..+.+.+.+.|.
T Consensus 143 i~~rl~~a~~-~~~-----~~~~fd~~I~n~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 143 IQKRLAAAQK-EAQ-----EYHLFDYVIVND-DLEDAYEELKEILE 181 (184)
T ss_pred HHHHHHHHHH-HHh-----hhccCCEEEECc-CHHHHHHHHHHHHH
Confidence 2222222110 000 124589999887 44445555555443
No 478
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.85 E-value=7e-10 Score=92.52 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC----CCCCCCCC--HHHHHhhcccCCCCCCcc----cHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ----DSFYHNLT--EQELARVHEYNFDHPDAF----DTEKLL 114 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~----D~~~~~~~--~~~~~~~~~~~f~~p~~~----d~~~l~ 114 (303)
+.++ +++|.|+||||||||+++|...+++.....+.. +-++.... .......-.+.|++|..+ ..+.+.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~ 98 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVS 98 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHH
Confidence 7778 999999999999999999998875321100000 01110000 000112223456655433 223444
Q ss_pred HHHHHhhCCCccccCcccCCCCccCCCCceec----CCCcEEEEeccccccchh
Q 022073 115 SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRV----NPSDVILLEGILVFHDSR 164 (303)
Q Consensus 115 ~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~----~~~~vvildg~~~~~d~~ 164 (303)
+.++. ..........++.++.+++..+...+ .+++++++|+|++++|+.
T Consensus 99 ~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~ 151 (197)
T cd03278 99 EIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA 151 (197)
T ss_pred HHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence 45544 11112233456777777765444332 466899999999998654
No 479
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.85 E-value=4.7e-09 Score=82.36 Aligned_cols=144 Identities=8% Similarity=0.107 Sum_probs=89.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCCCC--CCCCHHHHHhh
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY--HNLTEQELARV 97 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~~~--~~~~~~~~~~~ 97 (303)
++++++|+.|.... .+.++......|..+.+.||||+|||||.+.|.=.--+ .|-..+-...|- ...+......+
T Consensus 3 irv~~in~~yg~~q--~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 3 IQLNGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred eEEcccccccccch--heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 45667777665443 55566666899999999999999999999998543222 344445444433 22222222111
Q ss_pred ---cccCCCC-----------------------CCcccHHHHHHHHHHhhCCCcc-ccC-cccCCCCccCCCCceecCCC
Q 022073 98 ---HEYNFDH-----------------------PDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPS 149 (303)
Q Consensus 98 ---~~~~f~~-----------------------p~~~d~~~l~~~l~~l~~~~~v-~~p-~~~~~~~~~~~~~~~~~~~~ 149 (303)
-+..|+. ++.-...+..+.|+.++..... ..| .++.++.+|+.++++.+-.+
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 1122221 1111223344555555543322 334 46888999988888888999
Q ss_pred cEEEEeccccccchhhh
Q 022073 150 DVILLEGILVFHDSRVR 166 (303)
Q Consensus 150 ~vvildg~~~~~d~~~~ 166 (303)
+++++|+|++.+||++.
T Consensus 161 qvllfdeptaaldpeit 177 (242)
T COG4161 161 QVLLFDEPTAALDPEIT 177 (242)
T ss_pred cEEeecCcccccCHHHH
Confidence 99999999999998754
No 480
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.84 E-value=1.9e-08 Score=84.41 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+++.+|+|+|++|||||||++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35778999999999999999999999874
No 481
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.83 E-value=1.2e-09 Score=114.76 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CCC-------------------EEEEeCC-CCCCCCCHHHHHhhcc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH-----DQR-------------------VVLVNQD-SFYHNLTEQELARVHE 99 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~-----~~~-------------------~~~l~~D-~~~~~~~~~~~~~~~~ 99 (303)
+++|.+++|.|+||||||||++.|++.+. ..| +.++.++ .++..++..+...+..
T Consensus 84 i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~ 163 (1394)
T TIGR00956 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999752 112 2344443 3445566666544321
Q ss_pred cCC---CCCCcccHH----H-HHHHHHHhhCCCcc-------ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 100 YNF---DHPDAFDTE----K-LLSSMEKLRHGQAV-------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 100 ~~f---~~p~~~d~~----~-l~~~l~~l~~~~~v-------~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... ..+.....+ . ....++.+...... ....+|.++.+|+..+...+.+++++++|+|+.++|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~ 243 (1394)
T TIGR00956 164 RCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243 (1394)
T ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 110 000111111 1 12345554443211 13458999999998888888999999999999999974
No 482
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.83 E-value=1.1e-08 Score=83.72 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~ 88 (303)
.|.|.|++||||||+|+.|++.+ +++.++.+++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---~i~hlstgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---GLPHLDTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCcEEcHhHHhHh
Confidence 58899999999999999999997 7899999887743
No 483
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.83 E-value=7.7e-09 Score=82.78 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
...+.||.|.|++||||-|.+..|++.+ ++..+++++..+. +... +++-....+. ..++.|.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky---~ftHlSaGdLLR~----E~~~--------~gse~g~~I~---~~i~~G~ 66 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKY---GFTHLSAGDLLRA----EIAS--------AGSERGALIK---EIIKNGD 66 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHc---CceeecHHHHHHH----HHcc--------ccChHHHHHH---HHHHcCC
Confidence 6678899999999999999999999998 6888998876632 1111 0111111111 2222333
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccch------hhhhhcCeEEEEecChHHHHHHHHhhCcc
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS------RVRELMNMKIFVDTDADVRLARRIRRDTV 192 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~------~~~~~~d~~I~v~~~~~~~~~R~~~R~~~ 192 (303)
-+...... +.+..+.....+....++||----.+. .+....++++|+||+.+++++|++.|+..
T Consensus 67 iVP~ei~~----~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 67 LVPVEITL----SLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred cCcHHHHH----HHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 22111100 000000111122233788884332222 22225689999999999999999999865
No 484
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.81 E-value=4.2e-08 Score=83.02 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=31.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
.|.|.|++||||||+++.|++.+ ++.+++.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~---~~~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY---GIPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEECCccHH
Confidence 58999999999999999999998 688999877653
No 485
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.80 E-value=1.1e-07 Score=75.74 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=66.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCC-----CcccHHHHHHHHHHhhCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHP-----DAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p-----~~~d~~~l~~~l~~l~~~ 123 (303)
+.|+|+|.+|.||||+++.|+ .+ +..+++..+|. .-....+..+ .-+|.+.+.+.+..+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~el~---------~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-- 65 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELNELA---------KENGLYTEYDELRKSVIVDVDKLRKRLEELL-- 65 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHHHHH---------HhcCCeeccCCccceEEeeHHHHHHHHHHHh--
Confidence 479999999999999999999 66 45555543332 2222222211 1256666666655431
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhC
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
...-.|+|+-++.+ .+.+|++|.+.+++++..+|+..|+
T Consensus 66 ------------------------~~~~~Ivd~H~~hl----~~~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 66 ------------------------REGSGIVDSHLSHL----LPDCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred ------------------------ccCCeEeechhhhc----CCCCCEEEEEcCCHHHHHHHHHHcC
Confidence 11235788866543 3378999999999999999998885
No 486
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=2.6e-09 Score=87.67 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=78.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc----------------
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEYNFDHPDA---------------- 107 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~---------------- 107 (303)
+..+..|.|.|.|||||||+++.|++.+.+. |-+.+++.+.-+ .+...++..-.-.|++|.+
T Consensus 29 I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk-~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~ 107 (263)
T COG1101 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK-KSVAKRANLLARVFQDPLAGTAPELTIEENLALAE 107 (263)
T ss_pred ecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceeccc-CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHH
Confidence 9999999999999999999999999988753 456666655443 3333333332233444421
Q ss_pred -------c----cH---HHHHHHHHHhhCCC----ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh
Q 022073 108 -------F----DT---EKLLSSMEKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (303)
Q Consensus 108 -------~----d~---~~l~~~l~~l~~~~----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~ 166 (303)
+ +. +.+.+.+..+..|- .-.+..+|.++.+.++...+...+++++++|+-++.+||...
T Consensus 108 ~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta 184 (263)
T COG1101 108 SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA 184 (263)
T ss_pred hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchH
Confidence 1 11 22233333333331 123345677777766666677799999999999999988743
No 487
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.79 E-value=1.4e-08 Score=93.51 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=92.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC---CCCCCCHHH---
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS---FYHNLTEQE--- 93 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~---~~~~~~~~~--- 93 (303)
+-+.|++|+|.+.. ..-...++.+.....|+++||||+||||+++.+.+.+.|. |.+.-..-. .|.+....+
T Consensus 390 i~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred EEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCc
Confidence 34588888886654 4555667778889999999999999999999999988763 212111111 111111111
Q ss_pred ----HHhhcccCCCCCCcccHHHHHHHHHHhhCCCc---cccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 94 ----LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA---VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 94 ----~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~---v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
.+.... .| ++....+.++..|..+...+. +.+..+|.++..|+..++..+..+.++++|+|++++|
T Consensus 469 ~~s~le~~~~-~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 469 DKSSLEFMMP-KF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred chhHHHHHHH-hc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence 111000 12 224667788888888876543 3455678888888777777789999999999999984
No 488
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.79 E-value=2.9e-09 Score=112.70 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=86.6
Q ss_pred CCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCc
Q 022073 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDA 107 (303)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~ 107 (303)
+.+..++..+++|.+++|+|++|||||||++.|.+.+++. .+.+++++.+....+..+...++.. ++ +..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~-~~-~~~ 517 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLS-YD-EYR 517 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccc-cc-hHH
Confidence 3455556669999999999999999999999999988653 2567778877655566666554421 21 100
Q ss_pred cc----HHHHHHHHHHhhCCCcc----ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 108 FD----TEKLLSSMEKLRHGQAV----DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 108 ~d----~~~l~~~l~~l~~~~~v----~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
+. ...+.+.+..+..+... ..-.+|.++.+|+..+++...+++++++|+|++.+|+.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 10 11123334444333321 12357888888888888888999999999999999975
No 489
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.78 E-value=6.1e-08 Score=83.95 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=79.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+|.++|.+||||||+|+.|++.+.. ..+.+++.|.+...+. .+.. .. ...+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~----------~~~~--~~-e~~~~~~~~~~------- 60 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP----------VWKE--KY-EEFIRDSTLYL------- 60 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH----------HhhH--Hh-HHHHHHHHHHH-------
Confidence 4889999999999999999998853 2456666654321100 0000 00 00011110000
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEecccccc--chhhhh---hc---CeEEEEecChHHHHHHHHhhCccccCCCHH
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFH--DSRVRE---LM---NMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~--d~~~~~---~~---d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~ 199 (303)
....+.....+|+|+..... ...+.. .. ...||+++|.+.+++|...|.. ....+
T Consensus 61 --------------i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~~~~ 123 (249)
T TIGR03574 61 --------------IKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KIPNE 123 (249)
T ss_pred --------------HHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CCCHH
Confidence 00112233458888854321 112221 11 2678999999999999887752 11222
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHH
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
.+...+.....|....+ ...++++|+.+.+ ...+++.+.|.+.
T Consensus 124 ~i~~l~~r~e~p~~~~~----wd~~~~~vd~~~~--~~~~ei~~~i~~~ 166 (249)
T TIGR03574 124 VIKDMYEKFDEPGTKYS----WDLPDLTIDTTKK--IDYNEILEEILEI 166 (249)
T ss_pred HHHHHHHhhCCCCCCCC----ccCceEEecCCCC--CCHHHHHHHHHHH
Confidence 23333444444432211 2458899976432 2334444544433
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.78 E-value=7.2e-09 Score=81.67 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=30.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|.++|++||||||+++.|++.+ +..+++.|.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~---~~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL---GAVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS---TEEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCEEEeHHHHH
Confidence 68899999999999999999988 58889988754
No 491
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.77 E-value=4.2e-08 Score=93.93 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC---CCHHHH-HhhcccCCCCCCcccHHHHHHHHHHhhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN---LTEQEL-ARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~---~~~~~~-~~~~~~~f~~p~~~d~~~l~~~l~~l~~ 122 (303)
+...|.++|..||||||+++.|++.| +..+++.|..... .+..++ ...+...| .+.-.+.|..+..
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L---~~~fiD~D~~ie~~~g~si~eif~~~Ge~~F-------R~~E~~~l~~~~~ 74 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMM---RLPFADADVEIEREIGMSIPSYFEEYGEPAF-------REVEADVVADMLE 74 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHh---CCCEEEchHHHHHHHCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 45679999999999999999999999 7899999976522 122221 11121111 0111122222211
Q ss_pred CCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhh-------hcCeEEEEecChHHHHHHHHhhCccc--
Q 022073 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE-------LMNMKIFVDTDADVRLARRIRRDTVE-- 193 (303)
Q Consensus 123 ~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~-------~~d~~I~v~~~~~~~~~R~~~R~~~~-- 193 (303)
..+.||--|-....+++.+. ....+|||+++.++..+|+..+....
T Consensus 75 -------------------------~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll 129 (542)
T PRK14021 75 -------------------------DFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPML 129 (542)
T ss_pred -------------------------cCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCC
Confidence 11234433333333443332 22479999999999999975432111
Q ss_pred cCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCH-HHHHHHHHHHHH
Q 022073 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~-~~~~~~v~~i~~ 247 (303)
.+...+. ..++.....|.| .+.||++|++++.+. ..++.+++.+..
T Consensus 130 ~~~~~~~-~~~l~~~R~~~Y-------~~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 130 NGDANKR-WKKLFKQRDPVF-------RQVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred CCCcHHH-HHHHHHHHHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 1111223 333333344555 477999998775543 455666666653
No 492
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.77 E-value=1.2e-08 Score=82.87 Aligned_cols=155 Identities=11% Similarity=0.108 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCccc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~ 127 (303)
+.||.+.|+|.|||||+++.|+..+. .....++.|.|...+..........+.+.....-....+...+..+...
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA---- 75 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH----
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH----
Confidence 46999999999999999999999986 3468888898875333222111111111100000012222222222210
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccc---hhhhhhc---C-eEEEEecChHHHHHHHHhhCccccCCCHHH
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELM---N-MKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d---~~~~~~~---d-~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~ 200 (303)
. .......--||+|..+..-. ..+++.+ + +.|-|.||.++..+|-..|.....| .
T Consensus 76 -------------i-aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G----~ 137 (174)
T PF07931_consen 76 -------------I-AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG----L 137 (174)
T ss_dssp -------------H-HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT----H
T ss_pred -------------H-HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH----H
Confidence 0 11122333456665544311 1122322 2 5678899999888887877532222 3
Q ss_pred HHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
...|+...- .....|+.|++...++
T Consensus 138 a~~q~~~Vh----------~~~~YDleVDTs~~sp 162 (174)
T PF07931_consen 138 AAWQAEHVH----------EGGRYDLEVDTSATSP 162 (174)
T ss_dssp HHHHTTGGG----------TT---SEEEETTSS-H
T ss_pred HHHHHhhcc----------cCCCCCEEEECCCCCH
Confidence 334543211 1245789999876554
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.77 E-value=7e-08 Score=81.11 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
...+.+|.|+||+|||||||++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 457789999999999999999999864
No 494
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.76 E-value=8.8e-08 Score=91.88 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CC--EEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--VVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~--~~~l~~D~~~ 86 (303)
.+++.+|.|+|.+||||||+++.|++.|.. .+ +.+++.|...
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 667889999999999999999999999963 22 5888888653
No 495
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.76 E-value=3.9e-07 Score=73.65 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=26.6
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 54 AGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 54 ~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|+|||||||+++.|++.+ +..+++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCC
Confidence 5999999999999999998 57888888765
No 496
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=8.1e-09 Score=105.82 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=104.1
Q ss_pred ccccCcccccCCCCC-CCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCCCCCCCH
Q 022073 21 FHMDGLEVRNKETGQ-PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSFYHNLTE 91 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--------~~~~~l~~D~~~~~~~~ 91 (303)
+++++.+|+..++++ |++.+++..+++|..++|+|+.|||||+|+.+|.+.++. ..+.++++..|..+-+.
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 667888887776433 488888999999999999999999999999999998864 13577888888877777
Q ss_pred HHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCccccC----cccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 92 QELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDIP----NYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v~~p----~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
+++.-++. .+|.++..++++ .+..|....+. ..|.++++|...+++.-+++++.++|-|+
T Consensus 599 reNILFG~-------~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 599 RENILFGS-------PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred HHhhhcCc-------cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 76654432 366666555554 34444443332 36788888877777777899999999999
Q ss_pred cccchhhh
Q 022073 159 VFHDSRVR 166 (303)
Q Consensus 159 ~~~d~~~~ 166 (303)
...|....
T Consensus 672 SAVDahvg 679 (1381)
T KOG0054|consen 672 SAVDAHVG 679 (1381)
T ss_pred hhhhHhhh
Confidence 99877543
No 497
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.75 E-value=2.9e-08 Score=81.81 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC-EEEEeCCCCCCCCCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR-VVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~-~~~l~~D~~~~~~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
+++|.|+||+|||||||++.|.+.++..- .++..+..-- ...+. -..|.| .+.+.+.+. ...+.-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~-----r~~E~~g~~y~f-----vs~~~f~~~---~~~~~f 68 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPP-----RPGEVDGVDYHF-----VSKEEFERM---IKAGEF 68 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-G-----GTTS-TTTSEEE-------HHHHHHH---HHTTHE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCC-----cccccCCcceEE-----Eeechhhhh---hccccE
Confidence 56899999999999999999999875321 1222221100 00000 111222 222333222 233433
Q ss_pred cccCccc---CCCCccCCCCceecCCCcEEEEeccccccchhhhh-hc-CeEEEEecChHHHHHHHHhhC
Q 022073 126 VDIPNYD---FKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE-LM-NMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 126 v~~p~~~---~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~-~~-d~~I~v~~~~~~~~~R~~~R~ 190 (303)
+.+..|. +++.... ....+.....++++--..+. ..+.+ .+ -+.|||.++....+++++++.
T Consensus 69 ie~~~~~g~~YGt~~~~--i~~~~~~gk~~il~~~~~g~-~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r 135 (183)
T PF00625_consen 69 IEYGEYDGNYYGTSKSA--IDKVLEEGKHCILDVDPEGV-KQLKKAGFNPIVIFIKPPSPEVLKRRLRRR 135 (183)
T ss_dssp EEEEEETTEEEEEEHHH--HHHHHHTTTEEEEEETHHHH-HHHHHCTTTEEEEEEEESSHHHHHHHHHTT
T ss_pred EEEeeecchhhhhccch--hhHhhhcCCcEEEEccHHHH-HHHHhcccCceEEEEEccchHHHHHHHhcc
Confidence 4333332 2221110 01223455667776544443 23332 22 268999988877777776553
No 498
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.75 E-value=7.3e-08 Score=80.02 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
|.|+|++||||||+++.|++.+ ++.+++.|+..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~~~~i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---GLPHISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCeEEECcHHHH
Confidence 7899999999999999999998 788999987663
No 499
>PLN03140 ABC transporter G family member; Provisional
Probab=98.75 E-value=6.2e-09 Score=109.46 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred ccccCcccccCCC-----------CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CC----------
Q 022073 21 FHMDGLEVRNKET-----------GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QR---------- 76 (303)
Q Consensus 21 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~---------- 76 (303)
++++|+++..... ....+..++..+++|.+++|.|+||||||||++.|+++..+ .|
T Consensus 868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~ 947 (1470)
T PLN03140 868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 947 (1470)
T ss_pred EEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence 5678888765421 12467778888999999999999999999999999997642 12
Q ss_pred -------EEEEeCC-CCCCCCCHHHHHhhcccCCCCCCcccH----HHHHHHHHHhhCCC----ccc---cCcccCCCCc
Q 022073 77 -------VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQ----AVD---IPNYDFKSYK 137 (303)
Q Consensus 77 -------~~~l~~D-~~~~~~~~~~~~~~~~~~f~~p~~~d~----~~l~~~l~~l~~~~----~v~---~p~~~~~~~~ 137 (303)
+.++.++ .++..++..+...+.... ..|...+. +...+.++.+.... .+- ...+|.++.+
T Consensus 948 ~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~l-r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 948 QETFARISGYCEQNDIHSPQVTVRESLIYSAFL-RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred hHHhhhheEEEccccccCCCCcHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 2233333 233445555543322110 11211221 22344555544322 111 1357888899
Q ss_pred cCCCCceecCCCcEEEEeccccccchhh
Q 022073 138 NNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 138 ~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
|+.++...+.+++++++|||++++|...
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 9888888889999999999999999753
No 500
>PLN02674 adenylate kinase
Probab=98.75 E-value=7.2e-08 Score=82.46 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
+....|.|.|++||||||+++.|++.+ ++.+++.++..+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~---~~~his~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY---CLCHLATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc---CCcEEchhHHHH
Confidence 334678899999999999999999998 789999987763
Done!