Query 022073
Match_columns 303
No_of_seqs 287 out of 2651
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jeo_A Uridine-cytidine kinase 100.0 5.3E-27 1.8E-31 201.6 20.5 213 22-251 14-235 (245)
2 3asz_A Uridine kinase; cytidin 99.9 2.2E-26 7.4E-31 193.1 17.8 205 45-251 3-207 (211)
3 3tqc_A Pantothenate kinase; bi 99.9 4.5E-27 1.5E-31 208.1 13.7 188 45-234 89-311 (321)
4 1uj2_A Uridine-cytidine kinase 99.9 8E-26 2.7E-30 195.0 17.7 206 45-251 19-233 (252)
5 3aez_A Pantothenate kinase; tr 99.9 1.5E-25 5.2E-30 198.5 13.8 188 45-234 87-302 (312)
6 1sq5_A Pantothenate kinase; P- 99.9 1.2E-25 4.1E-30 199.4 9.0 187 46-234 78-299 (308)
7 1a7j_A Phosphoribulokinase; tr 99.9 4.4E-24 1.5E-28 187.4 10.2 185 47-232 4-216 (290)
8 3c8u_A Fructokinase; YP_612366 99.9 1E-22 3.5E-27 170.4 12.6 181 45-230 19-207 (208)
9 1odf_A YGR205W, hypothetical 3 99.9 2E-22 6.7E-27 176.7 9.8 183 45-231 28-276 (290)
10 2ga8_A Hypothetical 39.9 kDa p 99.8 3.2E-21 1.1E-25 171.3 8.5 149 77-229 156-349 (359)
11 1rz3_A Hypothetical protein rb 99.8 4.3E-21 1.5E-25 159.7 6.0 173 45-231 19-200 (201)
12 4i1u_A Dephospho-COA kinase; s 99.7 4E-19 1.4E-23 147.5 3.5 171 45-235 6-189 (210)
13 2grj_A Dephospho-COA kinase; T 99.7 6.7E-19 2.3E-23 145.1 4.4 157 46-235 10-174 (192)
14 2qt1_A Nicotinamide riboside k 99.7 3.2E-18 1.1E-22 142.8 8.3 181 45-249 18-203 (207)
15 2f6r_A COA synthase, bifunctio 99.7 5.3E-17 1.8E-21 141.8 7.3 185 45-246 72-267 (281)
16 1jjv_A Dephospho-COA kinase; P 99.6 6.9E-17 2.4E-21 134.5 4.7 176 48-249 2-194 (206)
17 4e22_A Cytidylate kinase; P-lo 99.6 7.6E-15 2.6E-19 126.1 13.1 99 149-249 145-246 (252)
18 2if2_A Dephospho-COA kinase; a 99.6 6.7E-16 2.3E-20 128.2 6.1 171 49-249 2-189 (204)
19 1vht_A Dephospho-COA kinase; s 99.6 1.9E-15 6.5E-20 126.9 8.1 183 47-249 3-196 (218)
20 3vaa_A Shikimate kinase, SK; s 99.5 1.3E-14 4.3E-19 120.2 8.9 165 45-249 22-197 (199)
21 1uf9_A TT1252 protein; P-loop, 99.5 2.7E-15 9.1E-20 124.3 4.2 177 45-249 5-191 (203)
22 3r20_A Cytidylate kinase; stru 99.5 3.9E-15 1.3E-19 125.7 4.5 186 46-246 7-226 (233)
23 1cke_A CK, MSSA, protein (cyti 99.5 5.2E-15 1.8E-19 124.8 4.9 97 149-248 123-223 (227)
24 3gfo_A Cobalt import ATP-bindi 99.5 3.3E-15 1.1E-19 129.7 2.3 143 22-165 9-178 (275)
25 3fvq_A Fe(3+) IONS import ATP- 99.5 5.4E-15 1.8E-19 132.4 3.4 141 10-165 5-173 (359)
26 3tif_A Uncharacterized ABC tra 99.5 4.9E-15 1.7E-19 125.9 2.1 128 37-164 20-179 (235)
27 2yz2_A Putative ABC transporte 99.5 1.6E-14 5.4E-19 125.0 5.0 128 37-165 22-173 (266)
28 1q3t_A Cytidylate kinase; nucl 99.5 1.9E-14 6.4E-19 122.4 5.0 189 45-246 13-233 (236)
29 1vpl_A ABC transporter, ATP-bi 99.5 5.9E-15 2E-19 126.9 1.8 148 16-165 11-181 (256)
30 3rlf_A Maltose/maltodextrin im 99.5 1.1E-15 3.7E-20 137.8 -3.2 136 15-165 10-168 (381)
31 3nh6_A ATP-binding cassette SU 99.5 7.4E-15 2.5E-19 129.1 2.0 139 19-164 52-224 (306)
32 3t61_A Gluconokinase; PSI-biol 99.5 6.1E-13 2.1E-17 110.1 13.5 156 47-246 17-178 (202)
33 1ji0_A ABC transporter; ATP bi 99.5 1.6E-14 5.5E-19 123.1 3.9 121 44-165 28-174 (240)
34 2pcj_A ABC transporter, lipopr 99.5 5.1E-15 1.7E-19 124.9 0.5 122 42-164 24-174 (224)
35 2ff7_A Alpha-hemolysin translo 99.5 1.1E-14 3.9E-19 124.5 2.6 139 20-164 7-179 (247)
36 3lw7_A Adenylate kinase relate 99.5 2.6E-13 8.8E-18 109.2 10.5 171 49-247 2-176 (179)
37 1sgw_A Putative ABC transporte 99.5 2.4E-14 8.3E-19 119.7 4.5 139 21-164 11-167 (214)
38 3ake_A Cytidylate kinase; CMP 99.5 6.2E-14 2.1E-18 116.4 6.6 173 50-244 4-205 (208)
39 2pze_A Cystic fibrosis transme 99.5 2.6E-14 9.1E-19 120.9 4.3 137 21-164 7-164 (229)
40 4eun_A Thermoresistant glucoki 99.5 6.8E-13 2.3E-17 109.8 12.6 162 45-251 26-193 (200)
41 3tui_C Methionine import ATP-b 99.5 1.4E-14 4.9E-19 129.7 2.4 143 21-164 25-197 (366)
42 4g1u_C Hemin import ATP-bindin 99.5 1.5E-14 5.2E-19 125.0 2.4 126 38-165 27-182 (266)
43 2olj_A Amino acid ABC transpor 99.4 1.3E-14 4.3E-19 125.2 1.5 143 21-165 25-194 (263)
44 3nwj_A ATSK2; P loop, shikimat 99.4 3.5E-14 1.2E-18 121.4 4.1 63 20-86 17-83 (250)
45 2ixe_A Antigen peptide transpo 99.4 8.5E-15 2.9E-19 127.0 0.3 145 20-164 16-190 (271)
46 2cbz_A Multidrug resistance-as 99.4 1.4E-14 4.9E-19 123.2 1.6 140 21-164 4-161 (237)
47 1v43_A Sugar-binding transport 99.4 4.1E-14 1.4E-18 127.6 4.4 143 21-165 12-176 (372)
48 2yyz_A Sugar ABC transporter, 99.4 2.6E-14 8.8E-19 128.3 3.0 136 15-165 10-168 (359)
49 1g6h_A High-affinity branched- 99.4 1.6E-14 5.6E-19 124.3 1.7 127 39-165 24-188 (257)
50 2nq2_C Hypothetical ABC transp 99.4 1.9E-14 6.6E-19 123.5 2.0 129 37-165 20-163 (253)
51 2it1_A 362AA long hypothetical 99.4 3.2E-14 1.1E-18 127.8 3.3 126 40-165 21-168 (362)
52 2onk_A Molybdate/tungstate ABC 99.4 9.3E-15 3.2E-19 124.5 -0.3 132 15-165 8-161 (240)
53 3b5x_A Lipid A export ATP-bind 99.4 4.2E-14 1.4E-18 135.6 3.9 141 19-164 340-514 (582)
54 1z47_A CYSA, putative ABC-tran 99.4 2.6E-14 8.8E-19 128.0 1.8 144 21-165 15-180 (355)
55 3d31_A Sulfate/molybdate ABC t 99.4 3.5E-14 1.2E-18 127.0 2.3 122 41-165 19-162 (348)
56 1ukz_A Uridylate kinase; trans 99.4 1.4E-12 4.6E-17 108.0 11.7 39 45-86 12-50 (203)
57 1knq_A Gluconate kinase; ALFA/ 99.4 4.6E-12 1.6E-16 102.3 14.5 149 45-232 5-158 (175)
58 3gd7_A Fusion complex of cysti 99.4 4.8E-14 1.6E-18 127.9 2.8 146 19-165 18-190 (390)
59 1oxx_K GLCV, glucose, ABC tran 99.4 9.6E-15 3.3E-19 131.0 -1.9 121 45-165 28-175 (353)
60 2bwj_A Adenylate kinase 5; pho 99.4 1.9E-13 6.3E-18 112.7 5.8 122 45-191 9-138 (199)
61 1tev_A UMP-CMP kinase; ploop, 99.4 4.2E-13 1.4E-17 110.1 7.8 37 47-86 2-38 (196)
62 2h92_A Cytidylate kinase; ross 99.4 7.7E-14 2.6E-18 117.0 3.3 183 48-245 3-215 (219)
63 1mv5_A LMRA, multidrug resista 99.4 1E-13 3.5E-18 118.3 4.0 137 22-164 3-173 (243)
64 1b0u_A Histidine permease; ABC 99.4 4.8E-14 1.6E-18 121.7 1.8 126 40-165 24-188 (262)
65 4f4c_A Multidrug resistance pr 99.4 2.5E-14 8.4E-19 148.3 -0.0 180 17-229 1073-1287(1321)
66 1qf9_A UMP/CMP kinase, protein 99.4 6.8E-13 2.3E-17 108.6 8.2 38 46-86 4-41 (194)
67 2ghi_A Transport protein; mult 99.4 5.7E-14 1.9E-18 121.1 1.4 144 20-164 17-189 (260)
68 4a82_A Cystic fibrosis transme 99.4 1.1E-13 3.8E-18 132.5 2.9 140 19-164 338-511 (578)
69 1y63_A LMAJ004144AAA protein; 99.4 1.8E-12 6E-17 105.9 9.6 39 45-86 7-46 (184)
70 3qf4_A ABC transporter, ATP-bi 99.4 4.2E-14 1.4E-18 135.5 -0.6 140 19-164 340-513 (587)
71 4f4c_A Multidrug resistance pr 99.4 5E-14 1.7E-18 146.0 -0.2 139 19-163 414-587 (1321)
72 3b60_A Lipid A export ATP-bind 99.4 2.2E-13 7.6E-18 130.5 3.7 141 19-164 340-514 (582)
73 2ihy_A ABC transporter, ATP-bi 99.4 7.3E-14 2.5E-18 121.5 0.3 143 21-165 22-196 (279)
74 1g29_1 MALK, maltose transport 99.4 1.1E-13 3.7E-18 124.9 1.3 121 45-165 26-174 (372)
75 2c95_A Adenylate kinase 1; tra 99.3 1.1E-12 3.6E-17 107.9 6.7 120 46-190 7-134 (196)
76 4eaq_A DTMP kinase, thymidylat 99.3 1.3E-11 4.3E-16 104.4 13.4 182 45-249 23-226 (229)
77 2pjz_A Hypothetical protein ST 99.3 1.3E-13 4.5E-18 118.8 0.4 114 44-164 27-162 (263)
78 2yl4_A ATP-binding cassette SU 99.3 3.7E-13 1.3E-17 129.3 3.0 143 19-164 339-517 (595)
79 2cdn_A Adenylate kinase; phosp 99.3 1.8E-12 6.1E-17 107.2 6.7 39 45-86 17-55 (201)
80 3tr0_A Guanylate kinase, GMP k 99.3 1.9E-11 6.4E-16 101.1 12.5 176 45-246 4-185 (205)
81 2d2e_A SUFC protein; ABC-ATPas 99.3 3E-13 1E-17 116.0 1.3 126 38-164 19-177 (250)
82 3qf4_B Uncharacterized ABC tra 99.3 3.3E-13 1.1E-17 129.6 1.7 139 19-164 353-525 (598)
83 1zuh_A Shikimate kinase; alpha 99.3 1.1E-12 3.8E-17 105.3 4.3 37 47-86 6-42 (168)
84 3trf_A Shikimate kinase, SK; a 99.3 7.7E-13 2.6E-17 107.9 3.3 36 48-86 5-40 (185)
85 2pbr_A DTMP kinase, thymidylat 99.3 4.4E-12 1.5E-16 103.9 7.9 35 50-84 2-36 (195)
86 3kb2_A SPBC2 prophage-derived 99.3 5E-12 1.7E-16 101.5 7.6 35 49-86 2-36 (173)
87 2rhm_A Putative kinase; P-loop 99.3 2.2E-12 7.5E-17 105.7 5.3 171 46-251 3-188 (193)
88 2qi9_C Vitamin B12 import ATP- 99.3 5.2E-13 1.8E-17 114.2 1.3 122 39-165 17-168 (249)
89 2iyv_A Shikimate kinase, SK; t 99.3 7.4E-13 2.5E-17 107.9 2.0 160 49-251 3-168 (184)
90 2zu0_C Probable ATP-dependent 99.3 4E-13 1.4E-17 116.2 -0.0 141 21-164 21-198 (267)
91 3d3q_A TRNA delta(2)-isopenten 99.3 5.4E-13 1.8E-17 118.3 -0.0 145 48-219 7-163 (340)
92 2pt5_A Shikimate kinase, SK; a 99.2 2.1E-12 7E-17 103.6 2.9 34 50-86 2-35 (168)
93 2vp4_A Deoxynucleoside kinase; 99.2 1.7E-13 5.8E-18 116.1 -4.0 31 41-71 13-43 (230)
94 2z0h_A DTMP kinase, thymidylat 99.2 1.7E-11 5.7E-16 100.7 7.6 33 50-82 2-34 (197)
95 2qor_A Guanylate kinase; phosp 99.2 2.1E-11 7.1E-16 101.1 8.2 182 45-248 9-197 (204)
96 3g5u_A MCG1178, multidrug resi 99.2 1.2E-12 4E-17 135.5 0.1 140 19-164 386-560 (1284)
97 3g5u_A MCG1178, multidrug resi 99.2 1.4E-12 4.6E-17 135.1 0.5 142 19-164 1029-1205(1284)
98 2jaq_A Deoxyguanosine kinase; 99.2 1.7E-12 5.8E-17 107.2 0.9 74 167-245 123-198 (205)
99 1kag_A SKI, shikimate kinase I 99.2 3E-12 1E-16 103.1 1.9 36 48-86 4-39 (173)
100 2bbs_A Cystic fibrosis transme 99.2 4E-12 1.4E-16 111.0 2.6 134 20-165 40-194 (290)
101 2j41_A Guanylate kinase; GMP, 99.2 4.8E-12 1.6E-16 104.8 2.9 134 45-190 3-140 (207)
102 3tlx_A Adenylate kinase 2; str 99.2 4.6E-11 1.6E-15 101.9 8.8 39 45-86 26-64 (243)
103 1e6c_A Shikimate kinase; phosp 99.2 5.1E-12 1.8E-16 101.6 2.7 35 49-86 3-37 (173)
104 2plr_A DTMP kinase, probable t 99.2 1.6E-10 5.3E-15 95.9 11.7 30 47-76 3-32 (213)
105 3cm0_A Adenylate kinase; ATP-b 99.2 2.7E-11 9.1E-16 98.7 6.7 37 47-86 3-39 (186)
106 3fb4_A Adenylate kinase; psych 99.2 1.6E-11 5.4E-16 102.6 5.2 34 50-86 2-35 (216)
107 2wwf_A Thymidilate kinase, put 99.2 1.3E-11 4.5E-16 102.6 4.1 30 45-74 7-36 (212)
108 3a00_A Guanylate kinase, GMP k 99.2 2E-11 6.9E-16 99.7 4.8 26 48-73 1-26 (186)
109 1via_A Shikimate kinase; struc 99.2 1.3E-11 4.4E-16 99.8 3.4 35 49-86 5-39 (175)
110 1qhx_A CPT, protein (chloramph 99.2 7.3E-11 2.5E-15 95.3 8.0 38 48-86 3-40 (178)
111 3lnc_A Guanylate kinase, GMP k 99.1 2.4E-11 8.4E-16 102.6 5.0 29 45-73 24-53 (231)
112 3bk7_A ABC transporter ATP-bin 99.1 2.1E-12 7E-17 123.8 -2.0 136 21-164 358-505 (607)
113 3dl0_A Adenylate kinase; phosp 99.1 2.6E-11 8.8E-16 101.3 4.8 34 50-86 2-35 (216)
114 3ozx_A RNAse L inhibitor; ATP 99.1 1.5E-12 5.2E-17 123.1 -3.4 118 44-164 290-419 (538)
115 3fdi_A Uncharacterized protein 99.1 1.1E-10 3.8E-15 96.6 8.2 31 48-81 6-36 (201)
116 3uie_A Adenylyl-sulfate kinase 99.1 2.8E-10 9.7E-15 93.9 10.3 44 44-87 21-66 (200)
117 1nks_A Adenylate kinase; therm 99.1 2.2E-10 7.5E-15 93.5 9.4 36 49-84 2-39 (194)
118 3iij_A Coilin-interacting nucl 99.1 9.9E-11 3.4E-15 94.9 7.0 39 45-86 8-46 (180)
119 2yvu_A Probable adenylyl-sulfa 99.1 7.5E-10 2.6E-14 90.2 11.9 41 45-85 10-52 (186)
120 1nn5_A Similar to deoxythymidy 99.1 9.9E-11 3.4E-15 97.4 6.7 31 46-76 7-37 (215)
121 3a4m_A L-seryl-tRNA(SEC) kinas 99.1 8.3E-10 2.8E-14 95.0 12.7 161 47-251 3-173 (260)
122 1yqt_A RNAse L inhibitor; ATP- 99.1 2.4E-12 8.3E-17 121.9 -3.7 136 21-164 288-435 (538)
123 3hdt_A Putative kinase; struct 99.1 2E-10 6.8E-15 96.4 8.2 35 47-84 13-47 (223)
124 1zak_A Adenylate kinase; ATP:A 99.1 7.9E-11 2.7E-15 98.8 5.8 38 46-86 3-40 (222)
125 3j16_B RLI1P; ribosome recycli 99.1 3.2E-11 1.1E-15 115.4 2.3 116 45-164 375-501 (608)
126 3tau_A Guanylate kinase, GMP k 99.1 5E-11 1.7E-15 99.2 3.2 177 45-246 5-187 (208)
127 1kht_A Adenylate kinase; phosp 99.1 1.2E-10 4.2E-15 94.9 5.2 39 48-86 3-43 (192)
128 3umf_A Adenylate kinase; rossm 99.0 8.3E-10 2.8E-14 92.1 10.1 44 40-86 21-64 (217)
129 2pez_A Bifunctional 3'-phospho 99.0 1.8E-09 6.2E-14 87.3 11.8 39 46-84 3-43 (179)
130 1aky_A Adenylate kinase; ATP:A 99.0 3.7E-10 1.3E-14 94.5 7.6 38 46-86 2-39 (220)
131 1zd8_A GTP:AMP phosphotransfer 99.0 2.6E-10 9E-15 96.0 5.6 39 45-86 4-42 (227)
132 1z6g_A Guanylate kinase; struc 99.0 1.6E-10 5.6E-15 96.8 4.2 43 21-80 11-53 (218)
133 1ak2_A Adenylate kinase isoenz 99.0 4.5E-10 1.5E-14 95.0 6.7 39 45-86 13-51 (233)
134 2xb4_A Adenylate kinase; ATP-b 99.0 7.7E-10 2.6E-14 92.9 7.4 34 50-86 2-35 (223)
135 1m7g_A Adenylylsulfate kinase; 99.0 2.8E-10 9.5E-15 94.8 4.4 42 45-86 22-66 (211)
136 4edh_A DTMP kinase, thymidylat 99.0 2.8E-09 9.4E-14 88.9 9.8 32 46-77 4-35 (213)
137 2vli_A Antibiotic resistance p 99.0 5.8E-09 2E-13 84.4 11.4 27 47-73 4-30 (183)
138 3be4_A Adenylate kinase; malar 98.9 7.8E-10 2.7E-14 92.5 5.8 37 47-86 4-40 (217)
139 4tmk_A Protein (thymidylate ki 98.9 2.4E-09 8E-14 89.2 8.5 77 168-249 132-208 (213)
140 4hlc_A DTMP kinase, thymidylat 98.9 8.3E-09 2.9E-13 85.4 11.6 80 168-250 124-203 (205)
141 3lv8_A DTMP kinase, thymidylat 98.9 1.6E-09 5.5E-14 91.6 6.8 30 47-76 26-55 (236)
142 2iw3_A Elongation factor 3A; a 98.9 2.9E-10 9.8E-15 113.3 1.9 132 24-164 439-582 (986)
143 3v9p_A DTMP kinase, thymidylat 98.9 6.1E-10 2.1E-14 93.6 2.6 30 45-74 22-51 (227)
144 2v54_A DTMP kinase, thymidylat 98.8 2.8E-08 9.7E-13 81.7 12.1 26 47-72 3-28 (204)
145 3sr0_A Adenylate kinase; phosp 98.8 4.3E-09 1.5E-13 87.2 6.8 36 49-87 1-36 (206)
146 3bk7_A ABC transporter ATP-bin 98.8 1.1E-09 3.6E-14 105.0 3.4 139 24-164 95-262 (607)
147 2iw3_A Elongation factor 3A; a 98.8 1.5E-09 5.1E-14 108.2 4.6 55 21-75 672-726 (986)
148 1zp6_A Hypothetical protein AT 98.8 1E-08 3.4E-13 83.6 8.8 41 44-85 5-45 (191)
149 1e4v_A Adenylate kinase; trans 98.8 2.8E-09 9.7E-14 88.8 5.5 34 50-86 2-35 (214)
150 1yqt_A RNAse L inhibitor; ATP- 98.8 1.3E-09 4.6E-14 103.1 3.8 139 24-164 25-192 (538)
151 1kgd_A CASK, peripheral plasma 98.8 1.9E-09 6.5E-14 87.4 4.1 27 47-73 4-30 (180)
152 3hjn_A DTMP kinase, thymidylat 98.8 8.6E-09 2.9E-13 84.8 7.5 29 49-77 1-29 (197)
153 1ly1_A Polynucleotide kinase; 98.8 1E-08 3.5E-13 82.5 7.6 35 48-85 2-37 (181)
154 3gmt_A Adenylate kinase; ssgci 98.8 2.2E-09 7.6E-14 90.0 3.5 116 47-190 7-132 (230)
155 2ze6_A Isopentenyl transferase 98.8 2.1E-08 7.2E-13 85.8 9.7 35 49-86 2-36 (253)
156 1ex7_A Guanylate kinase; subst 98.8 4.6E-09 1.6E-13 85.5 5.2 24 50-73 3-26 (186)
157 2ocp_A DGK, deoxyguanosine kin 98.8 7.8E-10 2.7E-14 94.0 0.4 78 168-249 149-238 (241)
158 3ch4_B Pmkase, phosphomevalona 98.8 6.2E-08 2.1E-12 79.3 11.5 175 45-250 8-195 (202)
159 2v9p_A Replication protein E1; 98.8 6.4E-10 2.2E-14 97.4 -0.4 123 21-164 102-227 (305)
160 1ltq_A Polynucleotide kinase; 98.8 2.7E-08 9.3E-13 87.1 9.4 128 48-208 2-143 (301)
161 1p5z_B DCK, deoxycytidine kina 98.7 1.6E-08 5.6E-13 86.9 7.4 35 45-81 21-55 (263)
162 3ld9_A DTMP kinase, thymidylat 98.7 2.4E-09 8.1E-14 89.7 1.9 75 167-250 144-218 (223)
163 4gp7_A Metallophosphoesterase; 98.7 2.5E-09 8.5E-14 86.0 1.9 108 45-169 6-122 (171)
164 2gks_A Bifunctional SAT/APS ki 98.7 1.3E-08 4.4E-13 96.4 6.5 39 46-84 370-410 (546)
165 3ozx_A RNAse L inhibitor; ATP 98.7 2E-09 6.7E-14 101.8 0.8 120 45-164 22-172 (538)
166 3j16_B RLI1P; ribosome recycli 98.7 1.9E-09 6.6E-14 103.1 -0.0 139 24-164 81-255 (608)
167 2bdt_A BH3686; alpha-beta prot 98.6 6E-08 2.1E-12 78.9 7.8 37 48-86 2-38 (189)
168 1x6v_B Bifunctional 3'-phospho 98.6 1.9E-07 6.6E-12 89.1 12.3 38 47-84 51-90 (630)
169 1s96_A Guanylate kinase, GMP k 98.6 8.8E-08 3E-12 80.1 8.8 30 45-74 13-42 (219)
170 1lvg_A Guanylate kinase, GMP k 98.6 8.3E-08 2.8E-12 78.9 8.2 27 47-73 3-29 (198)
171 3cr8_A Sulfate adenylyltranfer 98.6 3.4E-08 1.2E-12 93.4 6.6 42 44-85 365-409 (552)
172 3zvl_A Bifunctional polynucleo 98.6 6.2E-07 2.1E-11 82.2 14.6 40 43-85 253-292 (416)
173 2bbw_A Adenylate kinase 4, AK4 98.6 3E-08 1E-12 84.3 5.5 26 47-72 26-51 (246)
174 3ney_A 55 kDa erythrocyte memb 98.6 1.6E-07 5.4E-12 77.0 8.6 29 45-73 16-44 (197)
175 1m8p_A Sulfate adenylyltransfe 98.6 2.4E-07 8.1E-12 88.2 10.2 41 45-85 393-436 (573)
176 3ux8_A Excinuclease ABC, A sub 98.5 1.9E-08 6.4E-13 97.9 2.1 37 128-164 200-238 (670)
177 1dek_A Deoxynucleoside monopho 98.5 7E-08 2.4E-12 81.6 4.9 31 49-82 2-32 (241)
178 2p5t_B PEZT; postsegregational 98.5 3.3E-07 1.1E-11 78.3 9.0 43 45-88 29-71 (253)
179 3b9q_A Chloroplast SRP recepto 98.5 2.4E-07 8.2E-12 81.2 8.3 42 45-86 97-139 (302)
180 1gtv_A TMK, thymidylate kinase 98.5 7.9E-10 2.7E-14 91.8 -7.3 27 50-76 2-28 (214)
181 1htw_A HI0065; nucleotide-bind 98.5 6.2E-08 2.1E-12 76.7 3.4 44 15-73 14-58 (158)
182 3ux8_A Excinuclease ABC, A sub 98.4 5.3E-08 1.8E-12 94.7 2.6 36 129-164 542-580 (670)
183 3a8t_A Adenylate isopentenyltr 98.4 5.9E-07 2E-11 79.3 9.0 37 46-85 38-74 (339)
184 3b85_A Phosphate starvation-in 98.4 2E-08 6.8E-13 83.3 -0.8 95 46-160 20-134 (208)
185 2og2_A Putative signal recogni 98.4 4.5E-07 1.6E-11 81.2 6.7 42 45-86 154-196 (359)
186 3tmk_A Thymidylate kinase; pho 98.3 2.3E-07 7.8E-12 77.2 2.7 29 46-74 3-31 (216)
187 1tq4_A IIGP1, interferon-induc 98.3 4.2E-09 1.4E-13 96.1 -8.8 25 50-74 71-95 (413)
188 2x8a_A Nuclear valosin-contain 98.3 6.3E-07 2.2E-11 77.5 4.8 39 45-86 43-81 (274)
189 2eyu_A Twitching motility prot 98.2 7.2E-07 2.5E-11 76.5 4.6 56 21-84 6-63 (261)
190 1znw_A Guanylate kinase, GMP k 98.2 5.5E-07 1.9E-11 74.4 3.6 31 43-73 15-45 (207)
191 3pih_A Uvrabc system protein A 98.2 2.7E-07 9.1E-12 91.8 1.2 37 128-164 803-842 (916)
192 2kjq_A DNAA-related protein; s 98.2 2.2E-06 7.5E-11 67.0 6.0 38 47-84 35-74 (149)
193 4aby_A DNA repair protein RECN 98.2 1E-07 3.6E-12 87.2 -1.9 28 45-73 58-85 (415)
194 2vf7_A UVRA2, excinuclease ABC 98.2 3.2E-07 1.1E-11 90.5 1.3 35 38-72 513-548 (842)
195 2qag_B Septin-6, protein NEDD5 98.2 5.3E-07 1.8E-11 82.3 2.3 48 10-72 17-66 (427)
196 1p6x_A Thymidine kinase; P-loo 98.2 6.2E-07 2.1E-11 79.3 2.5 32 45-76 4-35 (334)
197 2r6f_A Excinuclease ABC subuni 98.1 2E-06 6.8E-11 85.4 4.9 32 38-69 640-671 (972)
198 2yhs_A FTSY, cell division pro 98.1 4.3E-06 1.5E-10 77.5 6.5 41 45-85 290-332 (503)
199 2ehv_A Hypothetical protein PH 98.1 3.8E-06 1.3E-10 70.9 5.4 41 44-84 26-69 (251)
200 3exa_A TRNA delta(2)-isopenten 98.1 4.1E-06 1.4E-10 73.1 5.6 40 48-90 3-44 (322)
201 3sop_A Neuronal-specific septi 98.0 1.2E-06 4.1E-11 75.5 1.8 26 49-74 3-28 (270)
202 3foz_A TRNA delta(2)-isopenten 98.0 7.6E-06 2.6E-10 71.3 6.6 43 45-90 7-51 (316)
203 2gza_A Type IV secretion syste 98.0 3.2E-07 1.1E-11 82.5 -2.1 60 22-81 137-209 (361)
204 1gvn_B Zeta; postsegregational 98.0 2.6E-06 9.1E-11 74.0 3.7 42 45-87 30-71 (287)
205 3crm_A TRNA delta(2)-isopenten 98.0 6.7E-06 2.3E-10 72.3 5.8 35 48-85 5-39 (323)
206 2qm8_A GTPase/ATPase; G protei 98.0 2.5E-06 8.5E-11 75.9 3.1 39 45-83 52-92 (337)
207 1ye8_A Protein THEP1, hypothet 98.0 3.8E-06 1.3E-10 67.7 3.5 24 50-73 2-25 (178)
208 2obl_A ESCN; ATPase, hydrolase 97.9 3.3E-06 1.1E-10 75.4 3.1 53 21-75 46-98 (347)
209 3eph_A TRNA isopentenyltransfe 97.9 9.7E-06 3.3E-10 73.2 6.1 40 48-90 2-43 (409)
210 1rj9_A FTSY, signal recognitio 97.9 2.2E-05 7.4E-10 68.8 8.0 39 46-84 100-140 (304)
211 3euj_A Chromosome partition pr 97.9 4E-06 1.4E-10 77.7 3.1 30 45-75 27-56 (483)
212 3e70_C DPA, signal recognition 97.9 1.5E-05 5.1E-10 70.5 6.7 41 45-85 126-168 (328)
213 3thx_B DNA mismatch repair pro 97.9 1E-05 3.4E-10 80.7 5.9 31 41-71 666-696 (918)
214 2dpy_A FLII, flagellum-specifi 97.9 6.7E-06 2.3E-10 75.7 4.3 55 19-75 130-184 (438)
215 1cr0_A DNA primase/helicase; R 97.9 6.6E-06 2.3E-10 71.7 4.0 47 22-83 24-73 (296)
216 1zu4_A FTSY; GTPase, signal re 97.8 2.3E-05 7.8E-10 69.1 6.6 41 45-85 102-144 (320)
217 1nlf_A Regulatory protein REPA 97.8 9.6E-06 3.3E-10 70.0 3.9 30 44-73 26-55 (279)
218 2npi_A Protein CLP1; CLP1-PCF1 97.8 3.2E-06 1.1E-10 78.3 0.6 55 21-83 119-176 (460)
219 1lw7_A Transcriptional regulat 97.8 1.1E-05 3.8E-10 72.5 4.1 34 41-74 161-196 (365)
220 3thx_A DNA mismatch repair pro 97.8 1.4E-05 4.7E-10 79.9 5.0 31 39-69 653-683 (934)
221 2pt7_A CAG-ALFA; ATPase, prote 97.8 2.4E-06 8.3E-11 75.8 -0.5 45 38-82 161-206 (330)
222 3kta_A Chromosome segregation 97.8 1.6E-05 5.4E-10 63.9 4.3 28 45-73 24-51 (182)
223 3szr_A Interferon-induced GTP- 97.8 5.7E-06 1.9E-10 79.4 1.8 24 51-74 48-71 (608)
224 4a74_A DNA repair and recombin 97.8 1.1E-05 3.7E-10 67.2 3.3 41 44-84 21-69 (231)
225 3jvv_A Twitching mobility prot 97.8 1.2E-05 4.3E-10 71.8 3.9 30 45-74 120-149 (356)
226 1vma_A Cell division protein F 97.8 2.5E-05 8.5E-10 68.4 5.4 41 45-85 101-143 (306)
227 2i3b_A HCR-ntpase, human cance 97.8 1.2E-05 4E-10 65.5 3.0 25 49-73 2-26 (189)
228 1bd3_D Uprtase, uracil phospho 97.8 8.5E-07 2.9E-11 74.7 -3.9 46 255-300 29-74 (243)
229 1svm_A Large T antigen; AAA+ f 97.7 1.2E-05 4.1E-10 72.4 3.1 29 45-73 166-194 (377)
230 3ec2_A DNA replication protein 97.7 1.3E-05 4.3E-10 64.4 2.8 29 45-73 35-63 (180)
231 2ewv_A Twitching motility prot 97.6 3.2E-05 1.1E-09 69.7 4.2 30 45-74 133-162 (372)
232 1ixz_A ATP-dependent metallopr 97.6 4.2E-05 1.5E-09 64.9 4.7 35 45-82 48-82 (254)
233 2f1r_A Molybdopterin-guanine d 97.6 1.5E-05 5E-10 63.8 1.6 27 49-75 3-29 (171)
234 2px0_A Flagellar biosynthesis 97.6 3.7E-05 1.3E-09 67.0 4.3 41 46-86 103-146 (296)
235 1tf7_A KAIC; homohexamer, hexa 97.6 2.8E-05 9.6E-10 73.3 3.7 41 44-84 35-78 (525)
236 1g8f_A Sulfate adenylyltransfe 97.6 4.8E-05 1.6E-09 71.0 5.2 40 45-84 392-435 (511)
237 1nij_A Hypothetical protein YJ 97.6 4.2E-05 1.4E-09 67.4 4.6 35 47-81 3-37 (318)
238 1p9r_A General secretion pathw 97.6 6E-05 2.1E-09 68.8 5.6 39 46-84 165-204 (418)
239 2cvh_A DNA repair and recombin 97.6 4.7E-05 1.6E-09 62.8 4.5 40 44-84 16-55 (220)
240 1pui_A ENGB, probable GTP-bind 97.6 2E-05 6.9E-10 64.5 2.1 46 21-71 4-49 (210)
241 3czq_A Putative polyphosphate 97.6 0.00031 1.1E-08 60.9 9.5 38 46-83 84-121 (304)
242 1tf7_A KAIC; homohexamer, hexa 97.6 1.7E-05 5.8E-10 74.8 1.7 105 44-163 277-385 (525)
243 2oap_1 GSPE-2, type II secreti 97.6 1E-05 3.5E-10 75.9 0.1 40 43-82 255-295 (511)
244 1iy2_A ATP-dependent metallopr 97.6 5.8E-05 2E-09 65.0 4.7 35 45-82 72-106 (278)
245 1xjc_A MOBB protein homolog; s 97.6 4.4E-05 1.5E-09 60.7 3.6 37 47-83 3-41 (169)
246 3lda_A DNA repair protein RAD5 97.5 6.7E-05 2.3E-09 68.1 4.8 41 44-84 174-222 (400)
247 1in4_A RUVB, holliday junction 97.5 1.1E-05 3.8E-10 71.6 -0.5 35 49-84 52-86 (334)
248 1bif_A 6-phosphofructo-2-kinas 97.5 0.00016 5.3E-09 67.2 7.2 29 45-73 36-64 (469)
249 2w0m_A SSO2452; RECA, SSPF, un 97.5 4.6E-05 1.6E-09 63.3 3.1 40 45-84 20-61 (235)
250 1n0w_A DNA repair protein RAD5 97.5 7.6E-05 2.6E-09 62.5 3.9 40 45-84 21-68 (243)
251 1np6_A Molybdopterin-guanine d 97.5 7.6E-05 2.6E-09 59.7 3.7 28 47-74 5-32 (174)
252 1ls1_A Signal recognition part 97.4 0.00021 7.1E-09 62.2 6.7 59 21-85 77-137 (295)
253 2qmh_A HPR kinase/phosphorylas 97.4 0.00011 3.9E-09 59.7 4.3 35 47-85 33-67 (205)
254 2qag_C Septin-7; cell cycle, c 97.4 9.2E-05 3.1E-09 67.6 3.7 24 50-73 33-56 (418)
255 3ice_A Transcription terminati 97.4 0.00015 5.3E-09 64.9 5.0 53 19-72 132-198 (422)
256 1j8m_F SRP54, signal recogniti 97.3 0.00025 8.5E-09 61.8 5.9 41 45-86 96-138 (297)
257 2p67_A LAO/AO transport system 97.3 0.00021 7.1E-09 63.5 5.1 41 45-85 53-95 (341)
258 2ffh_A Protein (FFH); SRP54, s 97.3 0.00036 1.2E-08 63.7 6.7 40 47-86 97-138 (425)
259 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0024 8.3E-08 53.8 11.6 40 46-86 37-76 (262)
260 1oix_A RAS-related protein RAB 97.3 0.00014 4.8E-09 58.8 3.5 28 45-72 26-53 (191)
261 1wb9_A DNA mismatch repair pro 97.3 0.00013 4.3E-09 72.0 3.7 33 39-72 599-631 (800)
262 1pzn_A RAD51, DNA repair and r 97.3 0.00026 8.8E-09 63.1 5.2 42 44-85 127-176 (349)
263 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00015 5.1E-09 65.1 3.3 28 45-73 21-48 (365)
264 3kl4_A SRP54, signal recogniti 97.2 0.0003 1E-08 64.3 5.4 41 46-86 95-137 (433)
265 1ewq_A DNA mismatch repair pro 97.2 0.00017 5.8E-09 70.7 3.6 25 48-72 576-600 (765)
266 2o5v_A DNA replication and rep 97.2 0.00022 7.4E-09 63.8 4.0 27 45-72 24-50 (359)
267 1qhl_A Protein (cell division 97.2 3.5E-05 1.2E-09 64.4 -1.2 27 49-75 28-54 (227)
268 2o8b_B DNA mismatch repair pro 97.2 0.0002 6.7E-09 72.5 3.9 50 21-72 751-812 (1022)
269 2dr3_A UPF0273 protein PH0284; 97.2 0.00029 1E-08 58.9 4.4 41 44-84 19-61 (247)
270 2ygr_A Uvrabc system protein A 97.2 6.9E-05 2.3E-09 74.8 0.5 30 39-68 659-688 (993)
271 1lv7_A FTSH; alpha/beta domain 97.2 0.00053 1.8E-08 58.1 5.9 36 50-86 47-82 (257)
272 3dm5_A SRP54, signal recogniti 97.1 0.00053 1.8E-08 62.8 6.0 40 47-86 99-140 (443)
273 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00047 1.6E-08 64.3 5.7 40 45-87 63-102 (499)
274 2yv5_A YJEQ protein; hydrolase 97.1 0.00023 7.7E-09 62.2 3.2 26 47-73 164-189 (302)
275 1u0l_A Probable GTPase ENGC; p 97.1 0.00016 5.4E-09 63.2 2.0 28 47-74 168-195 (301)
276 2rcn_A Probable GTPase ENGC; Y 97.1 0.00019 6.5E-09 64.0 2.4 27 47-73 214-240 (358)
277 3tqf_A HPR(Ser) kinase; transf 97.1 0.00052 1.8E-08 54.4 4.5 35 47-85 15-49 (181)
278 2qnr_A Septin-2, protein NEDD5 97.0 0.00019 6.4E-09 62.7 2.0 22 50-71 20-41 (301)
279 4b4t_J 26S protease regulatory 97.0 0.0028 9.7E-08 57.2 9.5 41 45-86 179-219 (405)
280 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00056 1.9E-08 53.1 4.3 25 48-72 23-47 (149)
281 2www_A Methylmalonic aciduria 97.0 0.00048 1.7E-08 61.4 4.4 40 46-85 72-113 (349)
282 3cf0_A Transitional endoplasmi 97.0 0.00049 1.7E-08 59.9 4.2 29 45-73 46-74 (301)
283 2f9l_A RAB11B, member RAS onco 97.0 0.00046 1.6E-08 56.0 3.7 25 48-72 5-29 (199)
284 2axn_A 6-phosphofructo-2-kinas 97.0 0.00057 2E-08 64.2 4.6 41 45-85 32-74 (520)
285 1of1_A Thymidine kinase; trans 96.9 0.00052 1.8E-08 61.4 3.9 35 46-80 47-81 (376)
286 1e2k_A Thymidine kinase; trans 96.9 0.00044 1.5E-08 61.0 3.3 34 47-80 3-36 (331)
287 1t9h_A YLOQ, probable GTPase E 96.9 8.6E-05 2.9E-09 64.9 -1.2 29 45-73 170-198 (307)
288 1e69_A Chromosome segregation 96.9 0.00044 1.5E-08 60.9 2.9 27 45-72 22-48 (322)
289 2xxa_A Signal recognition part 96.9 0.0017 5.9E-08 59.5 6.9 42 45-86 97-141 (433)
290 1c9k_A COBU, adenosylcobinamid 96.9 0.00057 2E-08 54.8 3.2 33 50-84 1-33 (180)
291 3hr8_A Protein RECA; alpha and 96.9 0.0011 3.6E-08 59.2 5.3 43 44-86 57-101 (356)
292 3p32_A Probable GTPase RV1496/ 96.8 0.0014 4.7E-08 58.5 6.0 40 45-84 76-117 (355)
293 1jbk_A CLPB protein; beta barr 96.8 0.00072 2.5E-08 53.8 3.8 27 47-73 42-68 (195)
294 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0012 4.2E-08 58.0 5.5 41 46-86 43-83 (322)
295 3t15_A Ribulose bisphosphate c 96.8 0.001 3.5E-08 57.7 4.8 37 45-82 33-69 (293)
296 2w58_A DNAI, primosome compone 96.8 0.00078 2.7E-08 54.7 3.5 25 49-73 55-79 (202)
297 1w1w_A Structural maintenance 96.8 0.00084 2.9E-08 61.5 3.9 30 45-74 23-52 (430)
298 4fcw_A Chaperone protein CLPB; 96.8 0.0016 5.5E-08 56.5 5.6 39 48-86 47-87 (311)
299 2vf7_A UVRA2, excinuclease ABC 96.8 0.00036 1.2E-08 68.9 1.5 21 45-65 33-53 (842)
300 2gj8_A MNME, tRNA modification 96.7 0.00075 2.6E-08 53.4 3.1 25 47-71 3-27 (172)
301 3bos_A Putative DNA replicatio 96.7 0.00084 2.9E-08 55.7 3.5 39 47-85 51-91 (242)
302 2j37_W Signal recognition part 96.7 0.0015 5.2E-08 60.9 5.5 41 46-86 99-141 (504)
303 2wji_A Ferrous iron transport 96.7 0.00078 2.7E-08 52.8 3.0 22 49-70 4-25 (165)
304 3b9p_A CG5977-PA, isoform A; A 96.7 0.0012 4E-08 57.1 4.3 39 47-86 53-91 (297)
305 2v3c_C SRP54, signal recogniti 96.7 0.00077 2.6E-08 61.8 3.1 41 46-86 97-139 (432)
306 3h4m_A Proteasome-activating n 96.7 0.0014 4.9E-08 56.1 4.6 40 46-86 49-88 (285)
307 1kjw_A Postsynaptic density pr 96.7 0.0026 8.8E-08 55.2 6.2 87 147-246 192-280 (295)
308 1v5w_A DMC1, meiotic recombina 96.7 0.0023 7.8E-08 56.8 6.0 41 44-84 118-166 (343)
309 2wjg_A FEOB, ferrous iron tran 96.7 0.0013 4.5E-08 52.4 4.0 24 47-70 6-29 (188)
310 2p65_A Hypothetical protein PF 96.7 0.00088 3E-08 53.1 3.0 26 48-73 43-68 (187)
311 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00096 3.3E-08 60.2 3.5 26 45-70 17-42 (392)
312 2wsm_A Hydrogenase expression/ 96.7 0.0025 8.4E-08 52.4 5.7 38 47-84 29-67 (221)
313 1m2o_B GTP-binding protein SAR 96.6 0.0009 3.1E-08 53.8 2.9 24 47-70 22-45 (190)
314 3qks_A DNA double-strand break 96.6 0.0015 5.3E-08 53.4 4.3 26 48-73 23-48 (203)
315 1yrb_A ATP(GTP)binding protein 96.6 0.0031 1E-07 53.3 6.3 41 45-85 11-52 (262)
316 2ygr_A Uvrabc system protein A 96.6 0.00048 1.6E-08 68.8 1.2 21 45-65 43-63 (993)
317 3m6a_A ATP-dependent protease 96.6 0.0012 4.1E-08 62.4 3.9 36 47-83 107-142 (543)
318 2r6f_A Excinuclease ABC subuni 96.6 0.00049 1.7E-08 68.5 1.2 21 45-65 41-61 (972)
319 3pih_A Uvrabc system protein A 96.6 0.00045 1.5E-08 68.9 0.9 28 23-65 14-41 (916)
320 2ce7_A Cell division protein F 96.6 0.0019 6.6E-08 59.8 5.1 35 51-86 52-86 (476)
321 1osn_A Thymidine kinase, VZV-T 96.6 0.00082 2.8E-08 59.4 2.4 32 45-76 9-41 (341)
322 1d2n_A N-ethylmaleimide-sensit 96.6 0.0023 7.8E-08 54.6 5.2 30 45-74 61-90 (272)
323 2h17_A ADP-ribosylation factor 96.6 0.00097 3.3E-08 53.0 2.6 33 38-70 11-43 (181)
324 3tvt_A Disks large 1 tumor sup 96.6 0.0011 3.7E-08 57.5 3.1 88 147-246 187-275 (292)
325 2ew1_A RAS-related protein RAB 96.6 0.0013 4.4E-08 53.5 3.4 37 35-71 13-49 (201)
326 3pfi_A Holliday junction ATP-d 96.5 0.018 6.3E-07 50.4 11.0 35 48-83 55-89 (338)
327 1sxj_C Activator 1 40 kDa subu 96.5 0.00053 1.8E-08 60.7 0.9 24 51-74 49-72 (340)
328 2zr9_A Protein RECA, recombina 96.5 0.0019 6.5E-08 57.5 4.5 41 44-84 57-99 (349)
329 2oil_A CATX-8, RAS-related pro 96.5 0.0017 5.7E-08 52.1 3.8 26 45-70 22-47 (193)
330 1njg_A DNA polymerase III subu 96.5 0.0014 4.7E-08 54.1 3.3 26 48-73 45-70 (250)
331 3shw_A Tight junction protein 96.5 0.007 2.4E-07 55.8 8.2 94 146-248 278-373 (468)
332 4b4t_K 26S protease regulatory 96.5 0.0023 7.7E-08 58.5 4.9 41 45-86 203-243 (428)
333 1sxj_E Activator 1 40 kDa subu 96.5 0.0013 4.6E-08 58.2 3.4 22 51-72 39-60 (354)
334 1ky3_A GTP-binding protein YPT 96.5 0.0018 6.3E-08 50.9 3.9 27 45-71 5-31 (182)
335 3n70_A Transport activator; si 96.5 0.0012 4.1E-08 50.8 2.7 25 49-73 25-49 (145)
336 4b4t_M 26S protease regulatory 96.5 0.0023 8E-08 58.5 4.9 41 45-86 212-252 (434)
337 1udx_A The GTP-binding protein 96.5 0.00052 1.8E-08 62.5 0.6 31 41-71 150-180 (416)
338 4b4t_L 26S protease subunit RP 96.5 0.0025 8.7E-08 58.3 4.9 41 45-86 212-252 (437)
339 1fnn_A CDC6P, cell division co 96.5 0.0019 6.6E-08 57.7 4.1 33 50-82 46-81 (389)
340 2fn4_A P23, RAS-related protei 96.4 0.0022 7.6E-08 50.4 4.0 27 45-71 6-32 (181)
341 3qkt_A DNA double-strand break 96.4 0.0022 7.6E-08 56.8 4.3 25 48-72 23-47 (339)
342 2lkc_A Translation initiation 96.4 0.002 6.7E-08 50.7 3.5 26 45-70 5-30 (178)
343 1ega_A Protein (GTP-binding pr 96.4 0.0016 5.4E-08 56.7 3.2 25 47-71 7-31 (301)
344 3k1j_A LON protease, ATP-depen 96.4 0.00053 1.8E-08 65.7 0.1 32 44-75 56-87 (604)
345 3ihw_A Centg3; RAS, centaurin, 96.4 0.0028 9.7E-08 50.6 4.3 26 45-70 17-42 (184)
346 2h57_A ADP-ribosylation factor 96.4 0.0016 5.5E-08 52.1 2.8 27 45-71 18-44 (190)
347 1z2a_A RAS-related protein RAB 96.4 0.0025 8.6E-08 49.4 3.8 24 47-70 4-27 (168)
348 2dyk_A GTP-binding protein; GT 96.4 0.0027 9.2E-08 48.9 3.9 23 49-71 2-24 (161)
349 1ypw_A Transitional endoplasmi 96.4 0.0019 6.6E-08 63.9 3.8 38 44-82 234-271 (806)
350 1upt_A ARL1, ADP-ribosylation 96.4 0.0032 1.1E-07 49.0 4.4 26 45-70 4-29 (171)
351 2zej_A Dardarin, leucine-rich 96.4 0.0013 4.4E-08 52.5 2.1 22 49-70 3-24 (184)
352 2ged_A SR-beta, signal recogni 96.3 0.0024 8.1E-08 51.1 3.7 26 46-71 46-71 (193)
353 2o52_A RAS-related protein RAB 96.3 0.0019 6.7E-08 52.2 3.1 34 37-70 14-47 (200)
354 1f6b_A SAR1; gtpases, N-termin 96.3 0.0014 4.7E-08 53.1 2.2 24 47-70 24-47 (198)
355 1ofh_A ATP-dependent HSL prote 96.3 0.0028 9.4E-08 54.8 4.3 37 48-85 50-86 (310)
356 2z43_A DNA repair and recombin 96.3 0.0025 8.6E-08 56.0 4.0 41 44-84 103-151 (324)
357 3syl_A Protein CBBX; photosynt 96.3 0.0024 8.4E-08 55.3 3.9 41 46-86 65-111 (309)
358 3lxx_A GTPase IMAP family memb 96.3 0.0021 7.3E-08 53.7 3.4 27 45-71 26-52 (239)
359 2a9k_A RAS-related protein RAL 96.3 0.0027 9.3E-08 50.2 3.8 25 46-70 16-40 (187)
360 2a5j_A RAS-related protein RAB 96.3 0.003 1E-07 50.5 4.1 26 45-70 18-43 (191)
361 1kao_A RAP2A; GTP-binding prot 96.3 0.0029 9.8E-08 48.9 3.9 23 48-70 3-25 (167)
362 1ko7_A HPR kinase/phosphatase; 96.3 0.0033 1.1E-07 54.9 4.5 34 47-84 143-176 (314)
363 1z06_A RAS-related protein RAB 96.3 0.0028 9.7E-08 50.5 3.9 26 45-70 17-42 (189)
364 2ce2_X GTPase HRAS; signaling 96.3 0.0026 9E-08 49.0 3.5 23 49-71 4-26 (166)
365 2chg_A Replication factor C sm 96.3 0.0025 8.5E-08 51.8 3.5 22 51-72 41-62 (226)
366 2hf9_A Probable hydrogenase ni 96.3 0.003 1E-07 52.0 4.0 37 47-83 37-74 (226)
367 2r6a_A DNAB helicase, replicat 96.3 0.0038 1.3E-07 57.6 5.0 46 38-83 193-241 (454)
368 1tue_A Replication protein E1; 96.3 0.0021 7.2E-08 52.5 2.9 29 45-73 55-83 (212)
369 2bme_A RAB4A, RAS-related prot 96.3 0.0026 8.9E-08 50.4 3.5 27 45-71 7-33 (186)
370 3hws_A ATP-dependent CLP prote 96.3 0.0021 7.2E-08 57.4 3.2 35 47-82 50-84 (363)
371 2orw_A Thymidine kinase; TMTK, 96.3 0.0025 8.6E-08 51.2 3.4 25 48-72 3-27 (184)
372 1vg8_A RAS-related protein RAB 96.3 0.003 1E-07 51.1 3.9 27 45-71 5-31 (207)
373 4b4t_H 26S protease regulatory 96.3 0.0033 1.1E-07 57.7 4.4 41 45-86 240-280 (467)
374 3eie_A Vacuolar protein sortin 96.3 0.0038 1.3E-07 54.7 4.8 36 46-82 49-84 (322)
375 2qby_A CDC6 homolog 1, cell di 96.3 0.002 6.9E-08 57.4 3.0 28 46-73 43-70 (386)
376 1l8q_A Chromosomal replication 96.2 0.0024 8.3E-08 55.9 3.4 38 47-84 36-75 (324)
377 2zan_A Vacuolar protein sortin 96.2 0.0037 1.3E-07 57.5 4.8 40 47-86 166-205 (444)
378 1u8z_A RAS-related protein RAL 96.2 0.0032 1.1E-07 48.7 3.8 23 48-70 4-26 (168)
379 3clv_A RAB5 protein, putative; 96.2 0.0043 1.5E-07 49.7 4.5 27 45-71 4-30 (208)
380 1sxj_D Activator 1 41 kDa subu 96.2 0.0022 7.6E-08 56.6 3.0 23 51-73 61-83 (353)
381 1nrj_B SR-beta, signal recogni 96.2 0.003 1E-07 51.6 3.6 27 45-71 9-35 (218)
382 3rhf_A Putative polyphosphate 96.2 0.054 1.9E-06 46.3 11.4 37 47-83 74-110 (289)
383 3kkq_A RAS-related protein M-R 96.2 0.004 1.4E-07 49.2 4.2 26 45-70 15-40 (183)
384 2erx_A GTP-binding protein DI- 96.2 0.003 1E-07 49.2 3.4 23 48-70 3-25 (172)
385 2il1_A RAB12; G-protein, GDP, 96.2 0.0029 9.8E-08 50.8 3.3 26 45-70 23-48 (192)
386 3tkl_A RAS-related protein RAB 96.2 0.0034 1.2E-07 50.2 3.7 26 45-70 13-38 (196)
387 1c1y_A RAS-related protein RAP 96.2 0.0037 1.3E-07 48.4 3.8 23 48-70 3-25 (167)
388 1z08_A RAS-related protein RAB 96.2 0.0032 1.1E-07 49.0 3.5 26 46-71 4-29 (170)
389 2r62_A Cell division protease 96.2 0.0014 4.9E-08 55.7 1.5 23 51-73 47-69 (268)
390 3tw8_B RAS-related protein RAB 96.1 0.0031 1.1E-07 49.5 3.3 26 45-70 6-31 (181)
391 1g41_A Heat shock protein HSLU 96.1 0.0027 9.3E-08 58.1 3.2 33 49-82 51-83 (444)
392 1g16_A RAS-related protein SEC 96.1 0.0036 1.2E-07 48.6 3.5 23 48-70 3-25 (170)
393 3lxw_A GTPase IMAP family memb 96.1 0.0031 1.1E-07 53.2 3.3 27 45-71 18-44 (247)
394 1z0f_A RAB14, member RAS oncog 96.1 0.0038 1.3E-07 48.9 3.7 26 45-70 12-37 (179)
395 3k53_A Ferrous iron transport 96.1 0.003 1E-07 53.9 3.2 24 48-71 3-26 (271)
396 3dz8_A RAS-related protein RAB 96.1 0.0025 8.6E-08 51.0 2.6 28 45-72 20-47 (191)
397 2g6b_A RAS-related protein RAB 96.1 0.004 1.4E-07 48.9 3.7 27 45-71 7-33 (180)
398 2p5s_A RAS and EF-hand domain 96.1 0.0042 1.5E-07 50.0 3.9 26 45-70 25-50 (199)
399 2b8t_A Thymidine kinase; deoxy 96.1 0.0048 1.6E-07 51.2 4.2 36 45-80 9-46 (223)
400 1gwn_A RHO-related GTP-binding 96.1 0.0037 1.3E-07 50.9 3.5 28 44-71 24-51 (205)
401 3t34_A Dynamin-related protein 96.1 0.0032 1.1E-07 56.2 3.3 22 50-71 36-57 (360)
402 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0038 1.3E-07 49.5 3.5 25 47-71 3-27 (189)
403 3c5c_A RAS-like protein 12; GD 96.1 0.0043 1.5E-07 49.5 3.9 26 45-70 18-43 (187)
404 1xx6_A Thymidine kinase; NESG, 96.1 0.01 3.5E-07 48.0 6.0 36 45-80 5-42 (191)
405 3end_A Light-independent proto 96.1 0.0066 2.2E-07 52.7 5.3 41 45-85 38-80 (307)
406 2nzj_A GTP-binding protein REM 96.1 0.0045 1.5E-07 48.4 3.8 24 47-70 3-26 (175)
407 3con_A GTPase NRAS; structural 96.1 0.0038 1.3E-07 49.7 3.5 25 47-71 20-44 (190)
408 2hxs_A RAB-26, RAS-related pro 96.1 0.0045 1.5E-07 48.5 3.9 25 46-70 4-28 (178)
409 1u94_A RECA protein, recombina 96.1 0.0054 1.9E-07 54.6 4.7 42 44-85 59-102 (356)
410 1ek0_A Protein (GTP-binding pr 96.1 0.0037 1.3E-07 48.5 3.3 22 49-70 4-25 (170)
411 3d8b_A Fidgetin-like protein 1 96.0 0.0047 1.6E-07 55.0 4.3 40 46-86 115-154 (357)
412 4b4t_I 26S protease regulatory 96.0 0.0053 1.8E-07 55.8 4.6 41 45-86 213-253 (437)
413 1z0j_A RAB-22, RAS-related pro 96.0 0.0037 1.3E-07 48.5 3.2 25 47-71 5-29 (170)
414 3uk6_A RUVB-like 2; hexameric 96.0 0.0038 1.3E-07 55.5 3.7 29 46-74 68-96 (368)
415 1svi_A GTP-binding protein YSX 96.0 0.0038 1.3E-07 49.9 3.3 25 46-70 21-45 (195)
416 2r2a_A Uncharacterized protein 96.0 0.0045 1.5E-07 50.5 3.6 25 47-71 4-28 (199)
417 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0041 1.4E-07 48.8 3.3 24 47-70 6-29 (177)
418 3bc1_A RAS-related protein RAB 96.0 0.0046 1.6E-07 49.1 3.7 26 45-70 8-33 (195)
419 4ad8_A DNA repair protein RECN 96.0 0.0018 6.2E-08 60.8 1.3 28 45-73 58-85 (517)
420 2qp9_X Vacuolar protein sortin 96.0 0.0054 1.9E-07 54.6 4.3 27 47-73 83-109 (355)
421 2gf9_A RAS-related protein RAB 95.9 0.0054 1.8E-07 48.9 3.9 26 45-70 19-44 (189)
422 2v1u_A Cell division control p 95.9 0.0037 1.3E-07 55.6 3.2 27 46-72 42-68 (387)
423 2bjv_A PSP operon transcriptio 95.9 0.0045 1.5E-07 52.5 3.6 37 48-84 29-67 (265)
424 3fwy_A Light-independent proto 95.9 0.0082 2.8E-07 52.5 5.3 41 45-85 45-87 (314)
425 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0049 1.7E-07 48.9 3.5 27 45-71 4-30 (184)
426 2xtp_A GTPase IMAP family memb 95.9 0.0042 1.4E-07 52.5 3.3 26 45-70 19-44 (260)
427 3pqc_A Probable GTP-binding pr 95.9 0.0039 1.3E-07 49.6 2.9 24 47-70 22-45 (195)
428 2fv8_A H6, RHO-related GTP-bin 95.9 0.0039 1.3E-07 50.7 2.9 25 46-70 23-47 (207)
429 1knx_A Probable HPR(Ser) kinas 95.9 0.0041 1.4E-07 54.1 3.2 34 47-84 146-179 (312)
430 3bwd_D RAC-like GTP-binding pr 95.9 0.005 1.7E-07 48.5 3.5 25 46-70 6-30 (182)
431 2gf0_A GTP-binding protein DI- 95.9 0.0063 2.1E-07 48.7 4.1 25 46-70 6-30 (199)
432 2bov_A RAla, RAS-related prote 95.9 0.0064 2.2E-07 49.0 4.1 25 46-70 12-36 (206)
433 1r2q_A RAS-related protein RAB 95.9 0.006 2.1E-07 47.2 3.8 24 47-70 5-28 (170)
434 1sxj_A Activator 1 95 kDa subu 95.9 0.0058 2E-07 57.3 4.2 36 47-83 76-111 (516)
435 1moz_A ARL1, ADP-ribosylation 95.9 0.0036 1.2E-07 49.4 2.5 25 46-70 16-40 (183)
436 2f7s_A C25KG, RAS-related prot 95.9 0.0053 1.8E-07 50.1 3.6 26 45-70 22-47 (217)
437 2z4s_A Chromosomal replication 95.9 0.0046 1.6E-07 56.8 3.4 25 48-72 130-154 (440)
438 1r8s_A ADP-ribosylation factor 95.9 0.0051 1.8E-07 47.5 3.3 22 50-71 2-23 (164)
439 1fzq_A ADP-ribosylation factor 95.9 0.0054 1.8E-07 48.7 3.5 25 46-70 14-38 (181)
440 1cp2_A CP2, nitrogenase iron p 95.8 0.0085 2.9E-07 50.8 4.9 39 48-86 1-41 (269)
441 2atv_A RERG, RAS-like estrogen 95.8 0.0068 2.3E-07 48.6 4.1 25 46-70 26-50 (196)
442 2zts_A Putative uncharacterize 95.8 0.005 1.7E-07 51.3 3.4 40 44-83 26-68 (251)
443 2efe_B Small GTP-binding prote 95.8 0.0056 1.9E-07 48.1 3.5 25 46-70 10-34 (181)
444 1um8_A ATP-dependent CLP prote 95.8 0.0047 1.6E-07 55.4 3.3 35 48-83 72-106 (376)
445 4ag6_A VIRB4 ATPase, type IV s 95.8 0.0043 1.5E-07 55.9 3.1 35 49-83 36-72 (392)
446 2iwr_A Centaurin gamma 1; ANK 95.8 0.006 2E-07 47.9 3.6 25 46-70 5-29 (178)
447 2qby_B CDC6 homolog 3, cell di 95.8 0.0053 1.8E-07 54.8 3.6 27 46-72 43-69 (384)
448 3q85_A GTP-binding protein REM 95.8 0.0064 2.2E-07 47.2 3.6 22 49-70 3-24 (169)
449 3cbq_A GTP-binding protein REM 95.8 0.0048 1.6E-07 49.7 3.0 26 45-70 20-45 (195)
450 1x3s_A RAS-related protein RAB 95.8 0.0046 1.6E-07 49.3 2.8 25 47-71 14-38 (195)
451 3q72_A GTP-binding protein RAD 95.8 0.0045 1.5E-07 47.9 2.7 22 49-70 3-24 (166)
452 2hup_A RAS-related protein RAB 95.8 0.0057 2E-07 49.5 3.4 26 45-70 26-51 (201)
453 1zd9_A ADP-ribosylation factor 95.8 0.0064 2.2E-07 48.5 3.6 26 45-70 19-44 (188)
454 3bh0_A DNAB-like replicative h 95.8 0.0038 1.3E-07 54.6 2.4 47 37-83 57-105 (315)
455 3iev_A GTP-binding protein ERA 95.8 0.0049 1.7E-07 53.8 3.1 27 45-71 7-33 (308)
456 2fg5_A RAB-22B, RAS-related pr 95.8 0.0055 1.9E-07 49.0 3.2 25 46-70 21-45 (192)
457 2bcg_Y Protein YP2, GTP-bindin 95.8 0.006 2.1E-07 49.3 3.4 27 45-71 5-31 (206)
458 1ksh_A ARF-like protein 2; sma 95.7 0.0069 2.4E-07 48.0 3.7 25 46-70 16-40 (186)
459 3oes_A GTPase rhebl1; small GT 95.7 0.0064 2.2E-07 49.0 3.5 26 46-71 22-47 (201)
460 4a1f_A DNAB helicase, replicat 95.7 0.0085 2.9E-07 52.9 4.5 46 38-83 36-83 (338)
461 2y8e_A RAB-protein 6, GH09086P 95.7 0.0066 2.3E-07 47.5 3.5 23 48-70 14-36 (179)
462 3b1v_A Ferrous iron uptake tra 95.7 0.0055 1.9E-07 52.5 3.2 24 48-71 3-26 (272)
463 2j0v_A RAC-like GTP-binding pr 95.7 0.0082 2.8E-07 48.7 4.1 26 45-70 6-31 (212)
464 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0073 2.5E-07 47.6 3.7 23 48-70 5-27 (186)
465 1zj6_A ADP-ribosylation factor 95.7 0.0073 2.5E-07 48.0 3.7 25 46-70 14-38 (187)
466 2afh_E Nitrogenase iron protei 95.7 0.011 3.9E-07 50.7 5.1 39 48-86 2-42 (289)
467 3t1o_A Gliding protein MGLA; G 95.7 0.0073 2.5E-07 48.1 3.6 27 46-72 12-38 (198)
468 3vfd_A Spastin; ATPase, microt 95.7 0.0085 2.9E-07 54.0 4.3 38 48-86 148-185 (389)
469 2fh5_B SR-beta, signal recogni 95.6 0.0064 2.2E-07 49.5 3.2 25 46-70 5-29 (214)
470 2cxx_A Probable GTP-binding pr 95.6 0.0044 1.5E-07 49.2 2.1 21 50-70 3-23 (190)
471 1mky_A Probable GTP-binding pr 95.6 0.0068 2.3E-07 55.6 3.6 26 47-72 179-204 (439)
472 2qgz_A Helicase loader, putati 95.6 0.0072 2.5E-07 52.7 3.6 26 48-73 152-177 (308)
473 3t5g_A GTP-binding protein RHE 95.6 0.0063 2.1E-07 48.0 2.9 24 47-70 5-28 (181)
474 4bas_A ADP-ribosylation factor 95.6 0.0078 2.7E-07 48.1 3.5 26 45-70 14-39 (199)
475 2c9o_A RUVB-like 1; hexameric 95.6 0.0087 3E-07 55.2 4.2 40 46-85 61-101 (456)
476 2qu8_A Putative nucleolar GTP- 95.6 0.0079 2.7E-07 49.7 3.5 25 46-70 27-51 (228)
477 3kjh_A CO dehydrogenase/acetyl 95.6 0.0095 3.2E-07 49.7 4.0 35 50-84 2-38 (254)
478 3auy_A DNA double-strand break 95.6 0.0077 2.6E-07 53.9 3.6 22 49-70 26-47 (371)
479 3cph_A RAS-related protein SEC 95.6 0.0094 3.2E-07 48.3 3.9 26 45-70 17-42 (213)
480 3co5_A Putative two-component 95.5 0.0032 1.1E-07 48.3 0.9 23 50-72 29-51 (143)
481 3reg_A RHO-like small GTPase; 95.5 0.0082 2.8E-07 48.0 3.5 26 46-71 21-46 (194)
482 2fu5_C RAS-related protein RAB 95.5 0.0048 1.7E-07 48.7 2.0 25 46-70 6-30 (183)
483 3pvs_A Replication-associated 95.5 0.0076 2.6E-07 55.4 3.6 25 49-73 51-75 (447)
484 1zbd_A Rabphilin-3A; G protein 95.5 0.0077 2.6E-07 48.5 3.3 25 46-70 6-30 (203)
485 2q6t_A DNAB replication FORK h 95.5 0.013 4.3E-07 53.9 5.0 47 37-83 189-238 (444)
486 2xkx_A Disks large homolog 4; 95.5 0.045 1.5E-06 53.4 9.1 87 147-246 618-706 (721)
487 1xp8_A RECA protein, recombina 95.5 0.011 3.6E-07 53.0 4.3 42 44-85 70-113 (366)
488 2i1q_A DNA repair and recombin 95.5 0.0066 2.3E-07 53.2 3.0 28 44-71 94-121 (322)
489 1hqc_A RUVB; extended AAA-ATPa 95.5 0.0052 1.8E-07 53.5 2.2 37 48-85 38-74 (324)
490 2b6h_A ADP-ribosylation factor 95.5 0.0092 3.1E-07 47.8 3.5 26 45-70 26-51 (192)
491 1jr3_A DNA polymerase III subu 95.5 0.0082 2.8E-07 53.3 3.5 26 48-73 38-63 (373)
492 3llu_A RAS-related GTP-binding 95.4 0.0051 1.8E-07 49.5 1.9 27 45-71 17-43 (196)
493 3io5_A Recombination and repai 95.4 0.014 4.7E-07 51.0 4.6 41 45-86 26-70 (333)
494 3te6_A Regulatory protein SIR3 95.4 0.0074 2.5E-07 52.8 3.0 29 45-73 42-70 (318)
495 2r44_A Uncharacterized protein 95.4 0.0094 3.2E-07 52.3 3.7 26 49-74 47-72 (331)
496 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0099 3.4E-07 52.0 3.7 27 45-71 120-146 (331)
497 4gzl_A RAS-related C3 botulinu 95.4 0.01 3.5E-07 48.1 3.6 25 46-70 28-52 (204)
498 3cf2_A TER ATPase, transitiona 95.4 0.01 3.5E-07 58.3 4.2 37 45-82 235-271 (806)
499 4dhe_A Probable GTP-binding pr 95.4 0.0047 1.6E-07 50.6 1.5 25 46-70 27-51 (223)
500 1zcb_A G alpha I/13; GTP-bindi 95.4 0.01 3.5E-07 53.0 3.8 28 45-72 30-57 (362)
No 1
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.95 E-value=5.3e-27 Score=201.56 Aligned_cols=213 Identities=49% Similarity=0.891 Sum_probs=170.0
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------CCEEEEeCCCCCCCCCHHHH
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-------QRVVLVNQDSFYHNLTEQEL 94 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-------~~~~~l~~D~~~~~~~~~~~ 94 (303)
-++|+|| + +.++.+|||+|++|||||||++.|++.++. ..+.++++|.+++.++..+.
T Consensus 14 ~l~~isl-----~----------i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~ 78 (245)
T 2jeo_A 14 GTENLYF-----Q----------SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQK 78 (245)
T ss_dssp ------------------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHH
T ss_pred eecceec-----c----------CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHh
Confidence 3678888 7 999999999999999999999999998742 24568999988888887665
Q ss_pred Hh--hcccCCCCCCcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeE
Q 022073 95 AR--VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMK 172 (303)
Q Consensus 95 ~~--~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~ 172 (303)
.. .+.+.|+.|..++.+.+.+.|..+..+.....+.+|.++++++.. .....+++++|+||+..+.+..+.+.+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~ 157 (245)
T 2jeo_A 79 AKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLR 157 (245)
T ss_dssp HHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEE
T ss_pred hhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeE
Confidence 43 334567777788888888999888777777888999999988754 455677899999999988788888889999
Q ss_pred EEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 173 IFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 173 I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
|++.++.+.+++|++.|+. .+|++.+.+..+|.....+.+++++.|.++.||+||++..+|...++.+++.|...+..
T Consensus 158 i~v~th~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 158 LFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp EEEECCHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 9999999999999999875 67888999999999888999999999999999999977666777888888888877654
No 2
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.94 E-value=2.2e-26 Score=193.09 Aligned_cols=205 Identities=43% Similarity=0.783 Sum_probs=167.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
.+++.+|||+|++|||||||++.|++.+++ .+.++++|.++...+.........+.|+.|..++.+.+.+.+..+..++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999843 3899999988864331111112233466677888899999999998888
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.+..|.++...+++... ...+....++++|+++.++|+.....+|.+||||++.+.++.|++.|+...+|.+...+.++
T Consensus 82 ~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877766432 23445678999999999998889999999999999999999999998755678888888999
Q ss_pred HhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
+.....|.|..|+.|.++.||+||++++++..+++.+.++|+..+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~ 207 (211)
T 3asz_A 161 YLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLAR 207 (211)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC
T ss_pred HHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHh
Confidence 98888999999999999999999999888889999999999877654
No 3
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=4.5e-27 Score=208.09 Aligned_cols=188 Identities=25% Similarity=0.416 Sum_probs=152.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHhhcc-cCCCCCCcccHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~~~~~~~~~~~~~~~~-~~f~~p~~~d~~~l~~~l~~ 119 (303)
.+.+.+|||+|++||||||+++.|.+.+.. ..+.++++|.|+. ........+. ..++.|+++|.+.+.+.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~--~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~ 166 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY--SNAKLEKQGLMKRKGFPESYDMPSLLRVLNA 166 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC--CHHHHHHTTCGGGTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc--chhhhhhHHHHhhccCcccccHHHHHHHHHh
Confidence 456889999999999999999999999862 3588999999984 3333333222 23666999999999999999
Q ss_pred hhCCC-ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh----------hhhhcCeEEEEecChHHHHHHHHh
Q 022073 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (303)
Q Consensus 120 l~~~~-~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~----------~~~~~d~~I~v~~~~~~~~~R~~~ 188 (303)
++.++ .+..|.|++..+++.......+.+++++|+||++++.++. +.+.+|++|||++|.+++++|+++
T Consensus 167 L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~ 246 (321)
T 3tqc_A 167 IKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYID 246 (321)
T ss_dssp HHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred hhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHH
Confidence 99998 8999999999998864444556788999999999997663 889999999999999999999999
Q ss_pred hCccccCC---------------C----HHHHHHHHhhccccchhhccccccccccEEecCCCCC
Q 022073 189 RDTVEKGR---------------D----IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 189 R~~~~~~~---------------~----~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
|+...++. + ......+|....+|.++++|.|++..||+|++.+.++
T Consensus 247 Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 247 RVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred hcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCC
Confidence 98554331 1 2233456766778999999999999999999977655
No 4
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.94 E-value=8e-26 Score=195.01 Aligned_cols=206 Identities=54% Similarity=0.926 Sum_probs=165.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------CCEEEEeCCCCCCCCCHHHH--HhhcccCCCCCCcccHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD-------QRVVLVNQDSFYHNLTEQEL--ARVHEYNFDHPDAFDTEKLLS 115 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-------~~~~~l~~D~~~~~~~~~~~--~~~~~~~f~~p~~~d~~~l~~ 115 (303)
..++.+|+|+|++||||||+++.|++.++. ..+.++++|+|++.+...+. ...+.+.|++|+++|.+.+.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 556789999999999999999999998853 24568999999987665433 345678899999999999999
Q ss_pred HHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccC
Q 022073 116 SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (303)
Q Consensus 116 ~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~ 195 (303)
.|..+..+..+..|.|++..+.+.. ......+.+++|+||++.+.++.+.+.+|.+|||+++.+++++|+..|+...++
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg 177 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 177 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhC
Confidence 9999998888888999888876642 122234568999999998767888888999999999999999999998644556
Q ss_pred CCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
.+.+.+..+|.....+.|.+++.|....||++|++..++...++.+.+.|.+.+..
T Consensus 178 ~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 178 RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 77888888888877788888898988999999954334455777777777766643
No 5
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.93 E-value=1.5e-25 Score=198.48 Aligned_cols=188 Identities=23% Similarity=0.379 Sum_probs=150.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCCCCCCCCHHHHHhhccc-CCCCCCcccHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEK 119 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~~~~~~~~~~~~~~~~~-~f~~p~~~d~~~l~~~l~~ 119 (303)
.++|.+|||+|+||||||||++.|++.+.+ ..+.++++|.++...+..+ ..... .++.|.+++.+.+.+.|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e--~~~~~~~~g~~~~~d~~~~~~~L~~ 164 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQ--RRNLMHRKGFPESYNRRALMRFVTS 164 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHH--HTTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHH--HHHHHHhcCCChHHHHHHHHHHHHH
Confidence 788999999999999999999999999875 3588999998874433222 22221 1456778999999999999
Q ss_pred hhCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccc---hhhhhhcCeEEEEecChHHHHHHHHhhCcc---
Q 022073 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELMNMKIFVDTDADVRLARRIRRDTV--- 192 (303)
Q Consensus 120 l~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d---~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~--- 192 (303)
+..+.. ...|.||+++.+++..+.+.+.+++++|+|||+.+.+ ..+.+.+|.+|||+++.+.+.+|+++|...
T Consensus 165 l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 165 VKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp HHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 886554 6789999999999877677788999999999999864 678899999999999999999999888321
Q ss_pred --c----------cCCCHHH----HHHHHhhccccchhhccccccccccEEecCCCCC
Q 022073 193 --E----------KGRDIAT----VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 193 --~----------~~~~~~~----~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
. .+.+.+. +..||.....|.+.+|+.|.+..||+||+++.++
T Consensus 245 ~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 245 TAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp TGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred ccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 1 1333333 3467888889999999999999999999877654
No 6
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.92 E-value=1.2e-25 Score=199.38 Aligned_cols=187 Identities=25% Similarity=0.414 Sum_probs=145.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC--C--CCEEEEeCCCCCCCCCHHHHHhhcc-cCCCCCCcccHHHHHHHHHHh
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--D--QRVVLVNQDSFYHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKL 120 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~--~--~~~~~l~~D~~~~~~~~~~~~~~~~-~~f~~p~~~d~~~l~~~l~~l 120 (303)
.++.+|||+|+||||||||++.|++.+. + ..+.++++|.++. ........+- ..++.+..++...+...+..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~--~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH--PNQVLKERGLMKKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC--CHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC--cHHHHHhCCEeecCCCCCCccHHHHHHHHHHH
Confidence 7889999999999999999999999886 3 2378889998874 2322222211 124456678888888888888
Q ss_pred hCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccch----------hhhhhcCeEEEEecChHHHHHHHHhh
Q 022073 121 RHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----------RVRELMNMKIFVDTDADVRLARRIRR 189 (303)
Q Consensus 121 ~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~----------~~~~~~d~~I~v~~~~~~~~~R~~~R 189 (303)
..+.. +.+|.|++..+.+.........+.+++|+||++++.+. .+.+.+|.+|||++|.+++++|+++|
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 88877 89999999998886544445567899999999998762 68889999999999999999999998
Q ss_pred Cccc---------------cCCCHH----HHHHHHhhccccchhhccccccccccEEecCCCCC
Q 022073 190 DTVE---------------KGRDIA----TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (303)
Q Consensus 190 ~~~~---------------~~~~~~----~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~ 234 (303)
+... +|.+.+ .+.+||.....|.+.+|+.|.++.||+||++++++
T Consensus 236 ~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 236 FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCC
Confidence 6211 133333 35577888888999999999999999999987554
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.90 E-value=4.4e-24 Score=187.41 Aligned_cols=185 Identities=17% Similarity=0.205 Sum_probs=137.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCCCC-CCHHHH-----Hhhc--ccCCCCCCcccHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHN-LTEQEL-----ARVH--EYNFDHPDAFDTEKLLSS 116 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~~~-~~~~~~-----~~~~--~~~f~~p~~~d~~~l~~~ 116 (303)
++.+|||+|++||||||+++.|++.++. ..+.++++|+||+. ...... ...+ .+.+-.|++++.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 5679999999999999999999998741 23799999999963 322111 1222 223333888999999988
Q ss_pred HHHhhCCCccccCcccC-----CCCccCCCCc---eec-CCCcEEEEeccccc---cchhhhhhcCeEEEEecChHHHHH
Q 022073 117 MEKLRHGQAVDIPNYDF-----KSYKNNVFPA---RRV-NPSDVILLEGILVF---HDSRVRELMNMKIFVDTDADVRLA 184 (303)
Q Consensus 117 l~~l~~~~~v~~p~~~~-----~~~~~~~~~~---~~~-~~~~vvildg~~~~---~d~~~~~~~d~~I~v~~~~~~~~~ 184 (303)
+..+..++.+..|.|++ ..+.+..... ... .+.+++|+||++.+ .+..+.+.+|++|||++|.+++++
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 98888777788888844 2222221111 123 45789999999997 356788899999999999999999
Q ss_pred HHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccE------EecCCC
Q 022073 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADI------IIPRGG 232 (303)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~------iI~~~~ 232 (303)
|+++|+...+|.+.+.+..++... .|.|.+|+.|.++.||+ +|+|++
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 999999777888888888888877 89999999999999999 677653
No 8
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.89 E-value=1e-22 Score=170.44 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=143.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhcccC-CCCCCcccHHHHHHHHHHhh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYN-FDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~~-f~~p~~~d~~~l~~~l~~l~ 121 (303)
.+++.+|+|+|+||||||||++.|++.+.+. ....++.|.++ +........+.+. ...|..++...+.+.+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH--LDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB--CCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc--CCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 4678999999999999999999999999742 47888999887 3443333332221 34567789888899999999
Q ss_pred CCCccccCcccCCCCccCCCCceecCC-CcEEEEeccccccch----hhhhhcCeEEEEecChHHHHHHHHhhCccccCC
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNP-SDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~-~~vvildg~~~~~d~----~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~ 196 (303)
.++.+..|.|+++.+..... ...+.. .+++++||++.++|. .+.+.+|.+|||+++.+++++|+++|. ..+|.
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~-~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAG-AAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTC
T ss_pred cCCceecccCCccccCCCCC-ceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCC
Confidence 88889999999888765322 223344 489999999986653 457889999999999999999999995 45688
Q ss_pred CHHHHHHHHhhccccchhhccccccccccEEecC
Q 022073 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPR 230 (303)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~ 230 (303)
+.+.+.+.|.....|.+ +|++|.+..||+||+.
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 99999999987778866 8999999999999964
No 9
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.87 E-value=2e-22 Score=176.71 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=135.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC----CEEEE-eCCCCCCCCCHHHHHhh--c------ccCCCCCCcccHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLV-NQDSFYHNLTEQELARV--H------EYNFDHPDAFDTE 111 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~----~~~~l-~~D~~~~~~~~~~~~~~--~------~~~f~~p~~~d~~ 111 (303)
.+++.+|||+|++||||||+++.|++.+.+. ....+ ++|+||.. ......+ + -..++.|+++|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~--~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT--HEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC--HHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC--hHHHHHHhccccccchhhhccCcchhHHH
Confidence 5678999999999999999999999998642 24444 99999954 3333322 1 1124468999999
Q ss_pred HHHHHHHHhhCC------CccccCcccCCC----CccCCCC-ceecCCCcEEEEeccccccchhh---------------
Q 022073 112 KLLSSMEKLRHG------QAVDIPNYDFKS----YKNNVFP-ARRVNPSDVILLEGILVFHDSRV--------------- 165 (303)
Q Consensus 112 ~l~~~l~~l~~~------~~v~~p~~~~~~----~~~~~~~-~~~~~~~~vvildg~~~~~d~~~--------------- 165 (303)
.+.+.+..++.+ ..+.+|.|++.. +++...+ ...+ +++++|+||+++++++..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~ 184 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVD 184 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHH
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHH
Confidence 999999999988 667889998877 8876543 2344 899999999999877642
Q ss_pred ------------hhhcCeE---EEEecChHHHHHH-HHhh--C-cccc--CCCHHHHHHHHhhccccchhhcccccc---
Q 022073 166 ------------RELMNMK---IFVDTDADVRLAR-RIRR--D-TVEK--GRDIATVLDQYSKFVKPAFDDFILPTK--- 221 (303)
Q Consensus 166 ------------~~~~d~~---I~v~~~~~~~~~R-~~~R--~-~~~~--~~~~~~~~~~~~~~~~p~~~~~i~~~~--- 221 (303)
.+.+|+. |||+++.+.++.| ++.| + ...+ |++.+.+ .+|....+|.|+.|+.|..
T Consensus 185 ~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~ 263 (290)
T 1odf_A 185 VNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSE 263 (290)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhc
Confidence 3446777 9999977777666 6666 3 2223 7787775 7888889999998876532
Q ss_pred ---ccccEEecCC
Q 022073 222 ---KYADIIIPRG 231 (303)
Q Consensus 222 ---~~aD~iI~~~ 231 (303)
+.||+|+..+
T Consensus 264 ~~~~~adlvl~~~ 276 (290)
T 1odf_A 264 SLGSIATLTLGID 276 (290)
T ss_dssp CSSSSEEEEEEEC
T ss_pred cCCCCCCEEEEEC
Confidence 3689888644
No 10
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.84 E-value=3.2e-21 Score=171.30 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=119.6
Q ss_pred EEEEeCCCCCCCCCHHHHHhhc-----ccCCCCCCcccHHHHHHHHHHhhCC----------------------------
Q 022073 77 VVLVNQDSFYHNLTEQELARVH-----EYNFDHPDAFDTEKLLSSMEKLRHG---------------------------- 123 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~-----~~~f~~p~~~d~~~l~~~l~~l~~~---------------------------- 123 (303)
+.++++|+|| ++..++..++ ...++.|++||...+.+.++.|+.+
T Consensus 156 v~vi~mDgFh--~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 2ga8_A 156 AQIVPMDGFH--LSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233 (359)
T ss_dssp EEEEEGGGGB--CCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETT
T ss_pred EEEEecCcCC--CCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence 5789999999 4555554332 4567889999999999999888765
Q ss_pred -CccccCcccCCCCccCCCCceecCCCcEEEEeccccccch----hhhhhcC-----eEEEEecChHHHHHHHHhhCccc
Q 022073 124 -QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMN-----MKIFVDTDADVRLARRIRRDTVE 193 (303)
Q Consensus 124 -~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~----~~~~~~d-----~~I~v~~~~~~~~~R~~~R~~~~ 193 (303)
..+..|.|++..+.+..........++++|+||++++++. .+.+.+| ++|||++|.+++++|+++|+. .
T Consensus 234 ~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~ 312 (359)
T 2ga8_A 234 IPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-Q 312 (359)
T ss_dssp CCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-H
T ss_pred CceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-c
Confidence 4678999999999886443333344799999997777663 4567898 999999999999999999974 4
Q ss_pred cCC--CHHHHHHHHhhccccchhhccccccccccEEec
Q 022073 194 KGR--DIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (303)
Q Consensus 194 ~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~ 229 (303)
.|. +.+....++.....|.. ++|.|.+..||+|+.
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 567 88888899998888866 899999999998774
No 11
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.82 E-value=4.3e-21 Score=159.74 Aligned_cols=173 Identities=20% Similarity=0.341 Sum_probs=109.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCCCCCCHHHHHhhccc----CCCCCCcccHHHHHHHH-
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEY----NFDHPDAFDTEKLLSSM- 117 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~~~~~~~~~~~~~~~----~f~~p~~~d~~~l~~~l- 117 (303)
..++.+|+|+|++||||||+++.|++.+.+. .+.+++.|.++.. .......+.. .+ ++++|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~~~~~~--~~~~d~~~l~~~v~ 94 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE--RAKRYHTGNEEWFEYY--YLQWDVEWLTHQLF 94 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC--HHHHSSSSSCHHHHHH--HTSSCHHHHHHHTG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC--HHHHHhcCCCCccCCC--ccccCHHHHHHHHH
Confidence 5678999999999999999999999988532 3677788887743 2111111000 00 2468888887654
Q ss_pred HHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 118 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 118 ~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
..+..+..+.+|.|++....... ......+.+++|+||++.+ +..+.+.+|.+|||++|.+++++|+++|+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~-~~~~~~~~d~~i~v~~~~~~~~~R~~~R~------- 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQ-RKEWRPFFDFVVYLDCPREIRFARENDQV------- 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTT-STTTGGGCSEEEEECCC-------------------
T ss_pred HHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhc-cHHHHhhcCEEEEEeCCHHHHHHHHhcCC-------
Confidence 66777777888888877443211 1223356789999999987 57788889999999999999999999986
Q ss_pred HHHHHHHHhhccccchhhccccc--cccccEEecCC
Q 022073 198 IATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRG 231 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~--~~~aD~iI~~~ 231 (303)
+....++.....|.++.|+.+. ++.||+||+|+
T Consensus 166 -~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 166 -KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred -HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 2233344344456677776664 57899999875
No 12
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.74 E-value=4e-19 Score=147.52 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=112.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC------CCHHHH-HhhcccCCCCCCcccHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN------LTEQEL-ARVHEYNFDHPDAFDTEKLLSSM 117 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~------~~~~~~-~~~~~~~f~~p~~~d~~~l~~~l 117 (303)
...+.-|||+|.+||||||+++.|++ + |+.+++.|...+. ....++ ..++...|...+..|...|.+.+
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~---g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v 81 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-R---GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI 81 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-C---CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence 34567899999999999999999998 5 8999999974422 122233 34555556555667766555433
Q ss_pred H----HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccc-hhhhhhcCeEEEEecChHHHHHHHHhhCcc
Q 022073 118 E----KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELMNMKIFVDTDADVRLARRIRRDTV 192 (303)
Q Consensus 118 ~----~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d-~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~ 192 (303)
- .++.-+.+.+|.......++.. ..+.+++++|.|+.+ + ..+.+.+|.+|+|++|++++++|+++|+
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~-----~~~~~~vv~d~pLL~-E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd-- 153 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREAR-----DAQGPYVIFVVPLLV-ESRNWKARCDRVLVVDCPVDTQIARVMQRN-- 153 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHH-----TCCSSSEEEECTTCT-TCHHHHHHCSEEEEEECCHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHH-----hcCCCEEEEEEeccc-ccCCccccCCeEEEEECCHHHHHHHHHhcC--
Confidence 1 1111123344544322222211 124578999999877 6 8888999999999999999999999997
Q ss_pred ccCCCHHHHHHHHhhccccchhhccccccccccEEecCC-CCCH
Q 022073 193 EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG-GDNH 235 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~-~~~~ 235 (303)
+.+.+.....+.... |.. +..+.||+||+|+ ++-+
T Consensus 154 --g~s~eea~~ri~~Q~-~~e-----ek~~~AD~VIdN~~gsle 189 (210)
T 4i1u_A 154 --GFTREQVEAIIARQA-TRE-----ARLAAADDVIVNDAATPD 189 (210)
T ss_dssp --CCCHHHHHHHHHHSC-CHH-----HHHHTCSEEEECSSCCHH
T ss_pred --CCCHHHHHHHHHHcC-ChH-----HHHHhCCEEEECCCCCHH
Confidence 344455444443322 222 1257899999988 6544
No 13
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.74 E-value=6.7e-19 Score=145.07 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH---H-HHhhcccCCCCCCcccHHHHHHHH----
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ---E-LARVHEYNFDHPDAFDTEKLLSSM---- 117 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~---~-~~~~~~~~f~~p~~~d~~~l~~~l---- 117 (303)
....+|||+|++||||||+++.|++.+ ++.++++|.+++..... + ...++...++ ++.+|.+.+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~ 85 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY---GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESR 85 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc---CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCH
Confidence 456899999999999999999999988 78999999987554332 1 1234555555 6677776655421
Q ss_pred HHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCC
Q 022073 118 EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (303)
Q Consensus 118 ~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~ 197 (303)
..++..+.+..|.+......+.. ...+++++|+|+.. +..+.+.+|.+|||++|.+++++|++
T Consensus 86 ~~~~~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~-e~~~~~~~d~vi~v~a~~e~r~~Rli---------- 148 (192)
T 2grj_A 86 ENLKKLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLK-RMGLDQLCDHVITVVASRETILKRNR---------- 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHCS----------
T ss_pred HHHHHHHhhhCHHHHHHHHHHHH------HcCCEEEEEEecee-ecChHHhCCEEEEEECCHHHHHHHHH----------
Confidence 11111122344544332222210 11468999999876 56778889999999999999998882
Q ss_pred HHHHHHHHhhccccchhhccccccccccEEecCCCCCH
Q 022073 198 IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (303)
Q Consensus 198 ~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~ 235 (303)
..|+.. ++++..+.||++|+|+++.+
T Consensus 149 ----~~q~~~--------~~~~~~~~AD~vI~n~~~~~ 174 (192)
T 2grj_A 149 ----EADRRL--------KFQEDIVPQGIVVANNSTLE 174 (192)
T ss_dssp ----SHHHHH--------TTCTTCCCCSEEEECSSCHH
T ss_pred ----HhcCCc--------hhhhHHhcCCEEEECCCCHH
Confidence 123322 12233688999999885433
No 14
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.74 E-value=3.2e-18 Score=142.77 Aligned_cols=181 Identities=17% Similarity=0.293 Sum_probs=108.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhccc---CCCCCCcccHHHHHHHHHHhh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEY---NFDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~---~f~~p~~~d~~~l~~~l~~l~ 121 (303)
++++.+|+|+|++||||||+++.|++.+. ++.++++|+++... ... ..... .++.+.+++...+.+.+..+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~l 92 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKPE--SEI-ETDKNGFLQYDVLEALNMEKMMSAISCWM 92 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCCG--GGS-CBCTTSCBCCSSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccCH--hHh-hccccCCChhHHHHHhHHHHHHHHHHHHH
Confidence 77889999999999999999999999774 68999999987432 111 11111 122334566666666554433
Q ss_pred CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHH
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~ 201 (303)
.. ...|....+. ....+.+++|+||++......+.+.+|.+||++++.+++++|+..|.. ........
T Consensus 93 ~~--~~~~~~~~~~--------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~-~~e~~~~~- 160 (207)
T 2qt1_A 93 ES--ARHSVVSTDQ--------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVY-QPPDSPGY- 160 (207)
T ss_dssp HH--HTTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCC-SSCCCTTH-
T ss_pred hC--CCCCCcCCCe--------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCC-CccchHHH-
Confidence 21 1122221111 113456799999998775456778899999999999999999988852 22221111
Q ss_pred HHHHhhccccchhhccccccccccEE--ecCCCCCHHHHHHHHHHHHHHh
Q 022073 202 LDQYSKFVKPAFDDFILPTKKYADII--IPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 202 ~~~~~~~~~p~~~~~i~~~~~~aD~i--I~~~~~~~~~~~~~v~~i~~~l 249 (303)
+....++.|..+.....+.+|.+ |+++.+ ++.+.+.|.+.+
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~----~eev~~~I~~~l 203 (207)
T 2qt1_A 161 ---FDGHVWPMYLKYRQEMQDITWEVVYLDGTKS----EEDLFLQVYEDL 203 (207)
T ss_dssp ---HHHTHHHHHHHHHHHGGGCSSCCEEEETTSC----HHHHHHHHHHHH
T ss_pred ---HHHHHhHHHHHHHHHHHhcCCeEEEecCCCC----HHHHHHHHHHHH
Confidence 21122233333333334556755 776643 444444444443
No 15
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.67 E-value=5.3e-17 Score=141.82 Aligned_cols=185 Identities=12% Similarity=0.172 Sum_probs=107.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC-----C-HHHH-HhhcccCCCCCCcccHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL-----T-EQEL-ARVHEYNFDHPDAFDTEKLLSSM 117 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~-----~-~~~~-~~~~~~~f~~p~~~d~~~l~~~l 117 (303)
.+.+.+|+|+|++||||||+++.|+. + ++.+++.|.+++.. . ..+. ...+...+...+.+|...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~v 147 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L---GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRV 147 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H---TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C---CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHH
Confidence 45678999999999999999999994 5 78899998873211 1 1111 12233223222345544332110
Q ss_pred ----HHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccc
Q 022073 118 ----EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE 193 (303)
Q Consensus 118 ----~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~ 193 (303)
..+...+.+..|.+.....+++. .....+.+++|+||++.+ +..+.+.+|.+|||++|.+++++|+.+|+
T Consensus 148 f~~~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~-~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~--- 221 (281)
T 2f6r_A 148 FGNKKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLL-EAGWQSMVHEVWTVVIPETEAVRRIVERD--- 221 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred hCCHHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhh-ccchHHhCCEEEEEcCCHHHHHHHHHHcC---
Confidence 00110111233333222222110 011234578999999866 45667789999999999999999999986
Q ss_pred cCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 194 KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
+.+.+.....+... .+... + ...||++|+|+++-+...+.+.+.+.
T Consensus 222 -g~s~e~~~~ri~~q-~~~~~-~----~~~AD~vIdn~~s~eel~~~I~~~l~ 267 (281)
T 2f6r_A 222 -GLSEAAAQSRLQSQ-MSGQQ-L----VEQSNVVLSTLWESHVTQSQVEKAWN 267 (281)
T ss_dssp -CCCHHHHHHHHHTS-CCHHH-H----HHTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHc-CChHh-h----HhhCCEEEECCCCHHHHHHHHHHHHH
Confidence 44556666666554 22221 1 24689999887543444444444443
No 16
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.64 E-value=6.9e-17 Score=134.51 Aligned_cols=176 Identities=17% Similarity=0.269 Sum_probs=97.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH------HHH-HhhcccCCCCCCcccHHHHH------
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE------QEL-ARVHEYNFDHPDAFDTEKLL------ 114 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~------~~~-~~~~~~~f~~p~~~d~~~l~------ 114 (303)
+.+|+|+|++||||||+++.|++ + +..+++.|.+++.... .+. ..++...+...+..+...+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l---g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L---GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T---TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C---CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 36899999999999999999988 5 7788899887543211 111 12222222211223322221
Q ss_pred ----HHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhC
Q 022073 115 ----SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 115 ----~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
..+.. +..|.+.....+.. .. .....+|+|+++.. +..+.+.+|.+|||++|.+++++|+..|+
T Consensus 78 ~~~~~~l~~------~~~p~v~~~~~~~~----~~-~~~~~vv~~~~~l~-e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 78 DEDKLWLNN------LLHPAIRERMKQKL----AE-QTAPYTLFVVPLLI-ENKLTALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHH----HT-CCSSEEEEECTTTT-TTTCGGGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHHHHh------ccCHHHHHHHHHHH----Hh-cCCCEEEEEechhh-hcCcHhhCCEEEEEECCHHHHHHHHHHcC
Confidence 11111 11232211111110 00 12347899998765 34467789999999999999999999886
Q ss_pred ccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
+.+.+.+...+... .+.. +..+.||++|+|+++.+.+++.+.+.|.+.+
T Consensus 146 ----~~~~e~~~~r~~~q-~~~~-----~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 146 ----NNNFEQIQRIMNSQ-VSQQ-----ERLKWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp ------CHHHHHHHHHHS-CCHH-----HHHHHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHhc-CChH-----HHHHhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 33455555544432 2221 2235799999988755534445555555443
No 17
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.60 E-value=7.6e-15 Score=126.13 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=58.9
Q ss_pred CcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCcc-ccCCCHHHHHHHHhhccccchhhcccccccccc-E
Q 022073 149 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-I 226 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~ 226 (303)
...+|+||...+. .+.+..+++|||+++.+++.+|+.++... ..+.+.+.+..++..+......+.+.|....+| +
T Consensus 145 ~~~~V~~gr~~~~--~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 145 APGLIADGRDMGT--IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp SSCEEEEESSCCC--CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred CCCEEEEeceece--eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 3457888866542 13345789999999999999998763111 124466777777777777777788889888888 8
Q ss_pred EecCCCCC-HHHHHHHHHHHHHHh
Q 022073 227 IIPRGGDN-HVAIDLIVQHIRTKL 249 (303)
Q Consensus 227 iI~~~~~~-~~~~~~~v~~i~~~l 249 (303)
+|+++..+ +..++.+.+.++..+
T Consensus 223 ~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 223 VLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHHC
T ss_pred EEECcCCCHHHHHHHHHHHHHHHh
Confidence 88877644 345566666665443
No 18
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.60 E-value=6.7e-16 Score=128.24 Aligned_cols=171 Identities=22% Similarity=0.320 Sum_probs=97.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC---HH---HHH-hhcccCCCCCCcccHHHHHHH-----
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT---EQ---ELA-RVHEYNFDHPDAFDTEKLLSS----- 116 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~---~~---~~~-~~~~~~f~~p~~~d~~~l~~~----- 116 (303)
++|+|+|++||||||+++.|++ + ++.+++.|.+++... .. ... ..+...|..++..+...+...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~ 77 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDE 77 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCH
Confidence 4799999999999999999999 6 789999988764321 11 111 122222322223443333221
Q ss_pred -----HHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCc
Q 022073 117 -----MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 117 -----l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
+..+ ..|.+.....+. .....+..++|+|+++.. +..+.+.+|.+|||++|.+++++|+..|
T Consensus 78 ~~~~~l~~l------~~~~v~~~~~~~----~~~~~~~~~vive~~~l~-~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-- 144 (204)
T 2if2_A 78 EKLRKLEEI------THRALYKEIEKI----TKNLSEDTLFILEASLLV-EKGTYKNYDKLIVVYAPYEVCKERAIKR-- 144 (204)
T ss_dssp HHHHHHHHH------HHHHHTTTHHHH----HHHSCTTCCEEEECSCST-TTTCGGGSSEEEEECCCHHHHHHHHHHT--
T ss_pred HHHHHHHHh------hCHHHHHHHHHH----HHhccCCCEEEEEccccc-cCCchhhCCEEEEEECCHHHHHHHHHHc--
Confidence 1111 112211111000 000112268999998765 4556677899999999999999999887
Q ss_pred cccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
+.+.+.....+.... +. .++.+.||++|+++.+ ++.+.+.|.+.+
T Consensus 145 ---~~~~~~~~~~~~~~~-~~-----~~~~~~ad~vId~~~~----~~~~~~~i~~~l 189 (204)
T 2if2_A 145 ---GMSEEDFERRWKKQM-PI-----EEKVKYADYVIDNSGS----IEETYKQVKKVY 189 (204)
T ss_dssp ---CCCHHHHHHHHTTSC-CH-----HHHGGGCSEECCCSSC----HHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHhCC-Ch-----hHHHhcCCEEEECCCC----HHHHHHHHHHHH
Confidence 233444444444332 21 1234678999987743 344444444444
No 19
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.59 E-value=1.9e-15 Score=126.89 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=104.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC------HHHH-HhhcccCCCCCCcccHHHHHHHHH-
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT------EQEL-ARVHEYNFDHPDAFDTEKLLSSME- 118 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~------~~~~-~~~~~~~f~~p~~~d~~~l~~~l~- 118 (303)
++.+|+|+|++||||||+++.|++ + +..+++.|.+++... ..++ ...+...+...+.++...+...+-
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l---g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~ 78 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L---GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFA 78 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T---TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c---CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhC
Confidence 468999999999999999999998 5 788999987654321 1111 223333343233455444332210
Q ss_pred ---HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccC
Q 022073 119 ---KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG 195 (303)
Q Consensus 119 ---~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~ 195 (303)
.+...+.+..|.+....... .......++++|+++.. +..+.+.+|.+|||++|++++++|+..|+.
T Consensus 79 ~~~~~~~l~~~~~p~v~~~~~~~-----~~~~~~~~vi~~~~~l~-~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---- 148 (218)
T 1vht_A 79 NPEEKNWLNALLHPLIQQETQHQ-----IQQATSPYVLWVVPLLV-ENSLYKKANRVLVVDVSPETQLKRTMQRDD---- 148 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-----HHHCCSSEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHhHCHHHHHHHHHH-----HHhcCCCEEEEEeeeee-ccCccccCCEEEEEECCHHHHHHHHHHcCC----
Confidence 00000011122221111110 00012357888988765 333667789999999999999999998852
Q ss_pred CCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
.+.+.....+... .+.+. +...||++|+++++-+...+.+.+.+...+
T Consensus 149 ~~~~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 149 VTREHVEQILAAQ-ATREA-----RLAVADDVIDNNGAPDAIASDVARLHAHYL 196 (218)
T ss_dssp CCHHHHHHHHHHS-CCHHH-----HHHHCSEEEECSSCTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3344444444432 22222 235689999988644455556655555443
No 20
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.3e-14 Score=120.19 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=89.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCC-cccHHHHHHHHHHhhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPD-AFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~-~~d~~~l~~~l~~l~~~ 123 (303)
..++.+|+|+|++||||||+++.|++.+ +..+++.|.+........... .|...+ .+........+..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l---~~~~i~~d~~~~~~~g~~i~~----~~~~~~~~~~~~~e~~~l~~l--- 91 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL---NVPFIDLDWYIEERFHKTVGE----LFTERGEAGFRELERNMLHEV--- 91 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEHHHHHHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc---CCCEEcchHHHHHHhCCcHHH----HHHhcChHHHHHHHHHHHHHH---
Confidence 8888899999999999999999999998 677788876541100000000 000000 00000001111111
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh---hhhhcCeEEEEecChHHHHHHHH-hhCccc--cCCC
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRI-RRDTVE--KGRD 197 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~---~~~~~d~~I~v~~~~~~~~~R~~-~R~~~~--~~~~ 197 (303)
.....++|..|........ .....+.+||+++|.+++.+|+. .|.... .+..
T Consensus 92 ----------------------~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~ 149 (199)
T 3vaa_A 92 ----------------------AEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKE 149 (199)
T ss_dssp ----------------------TTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCC
T ss_pred ----------------------hhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCC
Confidence 1223444444433222222 22346899999999999999988 342211 2333
Q ss_pred HH---HHHHHHhhccccchhhccccccccccEEecCCC-CCHHHHHHHHHHHHHHh
Q 022073 198 IA---TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG-DNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 198 ~~---~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~-~~~~~~~~~v~~i~~~l 249 (303)
.+ .....+.....|.| .. ||++|+++. +-+..++.+++.+...|
T Consensus 150 ~~~~~~~i~~~~~~r~~~y-------~~-ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 150 DDELMDFIIQALEKRAPFY-------TQ-AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------TT-SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHH-------hh-CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 32 22232223233333 23 999999876 44567777888777654
No 21
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.54 E-value=2.7e-15 Score=124.25 Aligned_cols=177 Identities=19% Similarity=0.264 Sum_probs=99.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCC-H--HHHHhhcccCCCCCCcccHHHHHHHH----
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLT-E--QELARVHEYNFDHPDAFDTEKLLSSM---- 117 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~-~--~~~~~~~~~~f~~p~~~d~~~l~~~l---- 117 (303)
.+++.+|+|+|++||||||+++.|++. ++.+++.|.+++... . .+........|. .+.++...+...+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~-~g~i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDALAARARENKEEELKRLFPEAVV-GGRLDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEE-TTEECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccHHHHHhcCChHHHHHHHHHHHHh-CCCcCHHHHHHHHhCCH
Confidence 456789999999999999999999995 678999998764322 1 111111011121 2234444333211
Q ss_pred ---HHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCcccc
Q 022073 118 ---EKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (303)
Q Consensus 118 ---~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~ 194 (303)
..+. .+..|.+. .+... .....+..++|+|+++.. +..+.+.+|.+|||++|.+++++|+..|+.
T Consensus 80 ~~~~~l~---~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~-~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~--- 147 (203)
T 1uf9_A 80 ERLKALE---AVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLF-EKGWEGRLHGTLLVAAPLEERVRRVMARSG--- 147 (203)
T ss_dssp HHHHHHH---HHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTT-TTTCGGGSSEEEEECCCHHHHHHHHHTTTC---
T ss_pred HHHHHHH---HHhChHHH---HHHHH--HhhhcCCCEEEEEeccee-ccCchhhCCEEEEEECCHHHHHHHHHHcCC---
Confidence 0000 01112211 00100 001233678999998765 445566789999999999999999998853
Q ss_pred CCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
.+.+.....+... .+.+ ++...||++|++++ .++.+.+.|...+
T Consensus 148 -~~~~~~~~~i~~~-~~~~-----~~~~~ad~vId~~~----~~~~~~~~i~~~~ 191 (203)
T 1uf9_A 148 -LSREEVLARERAQ-MPEE-----EKRKRATWVLENTG----SLEDLERALKAVL 191 (203)
T ss_dssp -CTTHHHHHHHTTS-CCHH-----HHHHHCSEEECCSS----HHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHC-CChh-----HHHHhCCEEEECCC----CHHHHHHHHHHHH
Confidence 2233333333332 2221 12356899998775 3444455554444
No 22
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.53 E-value=3.9e-15 Score=125.75 Aligned_cols=186 Identities=18% Similarity=0.218 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCC--
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-- 123 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~-- 123 (303)
.++.+|+|.|++||||||+++.|++.+ ++.+++.|.+|+.+...... .+.. .-+.+.+.+.+..+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l---g~~~~d~g~~~r~~~~~~~~--~gi~-----~~d~~~~~~~~~~~~~~~~ 76 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL---GARYLDTGAMYRIATLAVLR--AGAD-----LTDPAAIEKAAADAEIGVG 76 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHHHH--HTCC-----TTCHHHHHHHHHTCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCcccCCcHHHHHHHHHHH--cCCC-----chhhHHHHHHHHhCCEEEe
Confidence 456799999999999999999999998 68889998887543211111 1111 12223333333322100
Q ss_pred -----Cccc------------------------cCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEE
Q 022073 124 -----QAVD------------------------IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIF 174 (303)
Q Consensus 124 -----~~v~------------------------~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~ 174 (303)
..+. .|.+....... +.........+|+||-..+. .+.+..+++||
T Consensus 77 ~~~~~~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~---qr~~a~~~~~~V~~GRd~gt--~V~pda~lkif 151 (233)
T 3r20_A 77 SDPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDI---QRKLATEGGRVVVEGRDIGT--VVLPDADVKIF 151 (233)
T ss_dssp CCTTSCCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHH---HHHHHTSSSCEEEEESSCCC--CCCTTCSEEEE
T ss_pred ecCCCcEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHH---HHHHHHhcCcEEEeccccee--EEcCCCCEEEE
Confidence 0000 00000000000 01112222568889975541 23344689999
Q ss_pred EecChHHHHHHHHhhCcc-ccCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCCH-HHHHHHHHHHH
Q 022073 175 VDTDADVRLARRIRRDTV-EKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNH-VAIDLIVQHIR 246 (303)
Q Consensus 175 v~~~~~~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~~-~~~~~~v~~i~ 246 (303)
|+++.++|.+|+.++... ..+.+.+....+...+...+..+++.|.+...| ++|+++..+. ..++.+++.++
T Consensus 152 l~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~ 226 (233)
T 3r20_A 152 LTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVT 226 (233)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred EECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999874211 234577888888888887777888999887777 9998775442 33344444443
No 23
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.52 E-value=5.2e-15 Score=124.80 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=54.0
Q ss_pred CcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCC--CHHHHHHHHhhccccchhhcccccccc-cc
Q 022073 149 SDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKY-AD 225 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~-aD 225 (303)
...+++||+... ....+.+|++||++++.+++.+|+.++- ..++. +.+....++..+..+.|.+...|.... ++
T Consensus 123 ~~~~vldg~~~~--~~~~~~~d~~i~l~~~~e~~~~R~~~~l-~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~ 199 (227)
T 1cke_A 123 LPGLIADGRDMG--TVVFPDAPVKIFLDASSEERAHRRMLQL-QVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADA 199 (227)
T ss_dssp TTCEEEEESSCC--CCCCTTCSEEEEEECCHHHHHHHHHHHH-HHHTCCCCHHHHHHHHC-------------CCCCTTC
T ss_pred CCCEEEECCCcc--ceEecCCCEEEEEeCCHHHHHHHHHHHH-HhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCE
Confidence 467899998543 2344678999999999999999975431 12233 556666677666555666666665544 44
Q ss_pred EEecCC-CCCHHHHHHHHHHHHHH
Q 022073 226 IIIPRG-GDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 226 ~iI~~~-~~~~~~~~~~v~~i~~~ 248 (303)
++|+++ .+-+...+.+.+.+...
T Consensus 200 ~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 200 LVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHh
Confidence 888877 33334445555555443
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.50 E-value=3.3e-15 Score=129.68 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=85.5
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCC-CCCHHHHHhhcc
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH-NLTEQELARVHE 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~-~~~~~~~~~~~~ 99 (303)
+++|++++|++. .+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. |-+.+...+... ..........-.
T Consensus 9 ~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 9 KVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 344455544321 12344444559999999999999999999999999988653 334443322210 000011111122
Q ss_pred cCCCCCC-----------------------cccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 100 YNFDHPD-----------------------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 100 ~~f~~p~-----------------------~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
+.|++|. .-..+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++|+
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2333221 11122344555555443222 3346788888888888888899999999
Q ss_pred eccccccchhh
Q 022073 155 EGILVFHDSRV 165 (303)
Q Consensus 155 dg~~~~~d~~~ 165 (303)
|||++++|+..
T Consensus 168 DEPts~LD~~~ 178 (275)
T 3gfo_A 168 DEPTAGLDPMG 178 (275)
T ss_dssp ECTTTTCCHHH
T ss_pred ECccccCCHHH
Confidence 99999997653
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.50 E-value=5.4e-15 Score=132.38 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=95.1
Q ss_pred hccCC-Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C----------
Q 022073 10 IEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------- 76 (303)
Q Consensus 10 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------- 76 (303)
++.++ ++.|++.. ++|+|| + +.++.+++|.||||||||||+++|++.+.+. |
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl-----~----------i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISL-----S----------LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEE-----E----------ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEE-----E----------EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 34444 56666554 467777 6 9999999999999999999999999988653 1
Q ss_pred ------------EEEEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCC
Q 022073 77 ------------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (303)
Q Consensus 77 ------------~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~ 141 (303)
+.++.++. +++.++..+...++......+.....+...+.++.+...... ....+|.++.+|+..
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 23333332 334455555544432222222222344566677766554322 334688899999888
Q ss_pred CceecCCCcEEEEeccccccchhh
Q 022073 142 PARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 142 ~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+++.+.+++++++|||++.+|+..
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH
Confidence 888889999999999999999854
No 26
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.49 E-value=4.9e-15 Score=125.92 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=80.4
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------------EEEEeCCC-CCCCCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------------VVLVNQDS-FYHNLT 90 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------------~~~l~~D~-~~~~~~ 90 (303)
.+..++..+.++.+++|+|+||||||||++.|++.+.+. | +.++.++. ++..++
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 344444449999999999999999999999999988753 2 33333332 222334
Q ss_pred HHHHHhhcccCC---CCCCcccHHHHHHHHHHhhCCCcc---ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 91 EQELARVHEYNF---DHPDAFDTEKLLSSMEKLRHGQAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 91 ~~~~~~~~~~~f---~~p~~~d~~~l~~~l~~l~~~~~v---~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+...++.... ..+.....+.+.+.+..+...... ....+|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~ 179 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 443332211100 001111123344555555443321 33467888888888888888999999999999999764
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.48 E-value=1.6e-14 Score=125.03 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=88.1
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------EEEEeCCC--CCCCCCHHHHHh
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------VVLVNQDS--FYHNLTEQELAR 96 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-----------------~~~l~~D~--~~~~~~~~~~~~ 96 (303)
.+..++.++.+|.+++|.|+||||||||++.|++.+.+. | +.++.++. ++...+..+...
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 344444459999999999999999999999999988653 1 34555552 334456655544
Q ss_pred hcccCCCCCCcccHHHHHHHHHHhhCC--Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 97 VHEYNFDHPDAFDTEKLLSSMEKLRHG--QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 97 ~~~~~f~~p~~~d~~~l~~~l~~l~~~--~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
+....+ .+.....+.+.+.++.+... ... ....+|.++.+|+..+.+.+.+++++++|||++++|+..
T Consensus 102 ~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~ 173 (266)
T 2yz2_A 102 FAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173 (266)
T ss_dssp HTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHH
Confidence 432111 12223345566777776654 322 334688888898888888889999999999999997653
No 28
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.48 E-value=1.9e-14 Score=122.42 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=103.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhC--
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH-- 122 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~-- 122 (303)
..++.+|+|+|++||||||+++.|++.+ ++.+++.|.+++....... .....+ -+.+.+.+.+..+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l---g~~~~d~d~~~~~~~~~~~--~~g~~~-----~~~~~~~~~~~~~~~~f 82 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF---GFTYLDTGAMYRAATYMAL--KNQLGV-----EEVEALLALLDQHPISF 82 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHHH--HTTCCT-----TCHHHHHHHHHHSCCEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc---CCceecCCCeeEcceeeee--ccCCCc-----ccHHHHHHHHHhccccc
Confidence 5567899999999999999999999988 6889999887642111000 011111 112223333322111
Q ss_pred ------CCcccc-Cc-ccCCCCc------------------cCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEe
Q 022073 123 ------GQAVDI-PN-YDFKSYK------------------NNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD 176 (303)
Q Consensus 123 ------~~~v~~-p~-~~~~~~~------------------~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~ 176 (303)
+..+.. .. +...... .+............+++||.... ..+.+.+|++|||+
T Consensus 83 ~~~~~~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~--~~~l~~~d~vi~L~ 160 (236)
T 1q3t_A 83 GRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIG--TVVLPQAELKIFLV 160 (236)
T ss_dssp EEETTTEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCS--SSSGGGCSEEEEEE
T ss_pred cccCCccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcch--hhhccCCCEEEEEE
Confidence 000000 00 0000000 00000001123456788987643 23445679999999
Q ss_pred cChHHHHHHHHhhCccccC--CCHHHHHHHHhhccccchhhcccccccccc-EEecCCC-CCHHHHHHHHHHHH
Q 022073 177 TDADVRLARRIRRDTVEKG--RDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGG-DNHVAIDLIVQHIR 246 (303)
Q Consensus 177 ~~~~~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~-~~~~~~~~~v~~i~ 246 (303)
+|++++++|++.|. ..++ .+.+.+..++..+..+.+.+++.|....+| ++|++++ +-+...+.+.+.++
T Consensus 161 a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~ 233 (236)
T 1q3t_A 161 ASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAE 233 (236)
T ss_dssp CCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 99999999985432 1222 255666666665555666666667666666 8998774 33344455555443
No 29
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.48 E-value=5.9e-15 Score=126.86 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=92.3
Q ss_pred cccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEE---------------
Q 022073 16 VHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVL--------------- 79 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~--------------- 79 (303)
-+.+-++++|++++|.+ .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.
T Consensus 11 ~~~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp ---CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred ccCCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhh
Confidence 34556677777777742 24566677779999999999999999999999999988653 2233
Q ss_pred ----EeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEE
Q 022073 80 ----VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 80 ----l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
+.++. ++..++..+...+....+..+..-..+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 33332 222233333322211001101000112344556655443322 23467888888888878888999999
Q ss_pred EEeccccccchhh
Q 022073 153 LLEGILVFHDSRV 165 (303)
Q Consensus 153 ildg~~~~~d~~~ 165 (303)
++|||++++|+..
T Consensus 169 lLDEPts~LD~~~ 181 (256)
T 1vpl_A 169 ILDEPTSGLDVLN 181 (256)
T ss_dssp EEESTTTTCCHHH
T ss_pred EEeCCccccCHHH
Confidence 9999999997653
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.47 E-value=1.1e-15 Score=137.80 Aligned_cols=136 Identities=15% Similarity=0.081 Sum_probs=91.4
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------------ 75 (303)
++.|++.. ++|+|| + +.+|.+++|.|+||||||||+++|++.+.+.
T Consensus 10 ~~~yg~~~~L~~vsl-----~----------i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 10 TKAWGEVVVSKDINL-----D----------IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp EEEETTEEEEEEEEE-----E----------ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred EEEECCEEEEeeeEE-----E----------ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHH
Confidence 45555544 366666 5 9999999999999999999999999988653
Q ss_pred -CEEEEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 76 -RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 76 -~~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
++.++.++. +++.++..+...++...+..+.....+...+.++.+...... ....+|.++.+|+..+++.+.++++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 244444542 334455555443332112112222234455666666544322 3346888999998888888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|||++.+|+..
T Consensus 155 LLLDEPts~LD~~~ 168 (381)
T 3rlf_A 155 FLLDEPLSNLDAAL 168 (381)
T ss_dssp EEEESTTTTSCHHH
T ss_pred EEEECCCcCCCHHH
Confidence 99999999998753
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.47 E-value=7.4e-15 Score=129.14 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=95.3
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.+.++|++|+|++. .+.+..++..++++.+++|+|+||||||||+++|.+.+.+. .+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 458899999999643 46788999999999999999999999999999999988753 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc-----------c--ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-----------V--DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~-----------v--~~p~~~~~~~~~~~~~~~ 144 (303)
.++.++.+....+..+...++... ...+.+.+.+........ + ....+|.++.+|+..+++
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEecCCccCcccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 455555444333444443332211 222333333332221111 1 112578888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++|+|+|++.+|+.
T Consensus 205 L~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHH
T ss_pred HHhCCCEEEEECCcccCCHH
Confidence 88999999999999999664
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.47 E-value=6.1e-13 Score=110.14 Aligned_cols=156 Identities=12% Similarity=0.143 Sum_probs=90.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCCCc
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~~~ 125 (303)
.+.+|+|+|++||||||+++.|++.+ +..+++.|.++.. ..... .....| ........+..+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~~~~---~~~~~~~~g~~~------~~~~~~~~~~~l~~--- 81 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDALHPP---ENIRKMSEGIPL------TDDDRWPWLAAIGE--- 81 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGGCCH---HHHHHHHHTCCC------CHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcCcch---hhHHHHhcCCCC------CchhhHHHHHHHHH---
Confidence 46799999999999999999999998 6788999987632 11111 111122 11222222222211
Q ss_pred cccCcccCCCCccCCCCceecCCCcEEEEeccccccc--hhhhhhc---CeEEEEecChHHHHHHHHhhCccccCCCHHH
Q 022073 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (303)
Q Consensus 126 v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d--~~~~~~~---d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~ 200 (303)
.+.....+|+|+...... ..+.... +.+||+++|.+++++|+.+|... ....+.
T Consensus 82 -------------------~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~ 140 (202)
T 3t61_A 82 -------------------RLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMPSSL 140 (202)
T ss_dssp -------------------HHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHH
T ss_pred -------------------HHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHH
Confidence 001223456665543211 1122222 58999999999999999988632 223444
Q ss_pred HHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 201 ~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
+..++..... ++...++++|+++.+.+...+.+.+.|.
T Consensus 141 ~~~~~~~~~~--------~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 141 LQTQLETLED--------PRGEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp HHHHHHHCCC--------CTTSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--------CCCCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 4444544332 2245689999887544455555555554
No 33
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=1.6e-14 Score=123.11 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=79.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------------EEEEeCCC-CCCCCCHHHHHhhccc
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------------VVLVNQDS-FYHNLTEQELARVHEY 100 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------------~~~l~~D~-~~~~~~~~~~~~~~~~ 100 (303)
++.+|.+++|.|+||||||||++.|++.+.+. | +.++.++. ++..++..+...+...
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 39999999999999999999999999988652 1 44444443 2333455555444321
Q ss_pred CCCCCCcccHHHHHHHHHHhh-CC--CccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLR-HG--QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~-~~--~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.. .+.....+.+.+.++.+. .. ..-....+|.++.+|+..+.+.+.+++++++|||++++|+..
T Consensus 108 ~~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 108 NR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp TC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred cC-CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 11 111112234445555442 21 122345688888899888888889999999999999997653
No 34
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.47 E-value=5.1e-15 Score=124.91 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred ccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHH---H-hhcccCCCCCCcc--------
Q 022073 42 ENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQEL---A-RVHEYNFDHPDAF-------- 108 (303)
Q Consensus 42 ~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~---~-~~~~~~f~~p~~~-------- 108 (303)
+..+.+|.+++|.|+||||||||++.|++.+.+. |-+.+...+.. .....+. . ..-.+.++++.-+
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~-~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 102 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVD-YTNEKELSLLRNRKLGFVFQFHYLIPELTALEN 102 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECC-SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC-CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHH
Confidence 3339999999999999999999999999988753 33444432221 1121111 0 1112222222111
Q ss_pred --------------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 109 --------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 109 --------------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 103 VIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 122344455555443322 23467888888888778888999999999999999764
No 35
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.46 E-value=1.1e-14 Score=124.53 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=88.9
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe-----------------
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN----------------- 81 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~----------------- 81 (303)
.++++|++++|++...+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 46677888877432234677777779999999999999999999999999998753 233333
Q ss_pred ---CCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-------------ccCcccCCCCccCCCCcee
Q 022073 82 ---QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARR 145 (303)
Q Consensus 82 ---~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v-------------~~p~~~~~~~~~~~~~~~~ 145 (303)
++......+..+...++ .+ ..+.+.+.+.+..+...... ....+|.++.+|+..+++.
T Consensus 87 ~v~Q~~~l~~~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 87 VVLQDNVLLNRSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp EECSSCCCTTSBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEeCCCccccccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 32221112222222211 01 12233343444333221111 1236788888888888888
Q ss_pred cCCCcEEEEeccccccchh
Q 022073 146 VNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~ 164 (303)
+.+++++++|||++++|+.
T Consensus 161 ~~~p~lllLDEPts~LD~~ 179 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYE 179 (247)
T ss_dssp TTCCSEEEECCCCSCCCHH
T ss_pred hcCCCEEEEeCCcccCCHH
Confidence 8999999999999999664
No 36
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.46 E-value=2.6e-13 Score=109.24 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=89.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v~~ 128 (303)
++|+|+|++||||||+++.| +.+ +..+++.|++++. .....+ +...+...+...+.... +.....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g~~~i~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~ 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---GAKVIVMSDVVRK----RYSIEA------KPGERLMDFAKRLREIY-GDGVVA 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---TCEEEEHHHHHHH----HHHHHC---------CCHHHHHHHHHHHH-CTTHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---CCcEEEHhHHHHH----HHHhcC------CChhHHHHHHHHHHhhC-CHHHHH
Confidence 48999999999999999999 776 6778887654421 111111 00111111111111100 000000
Q ss_pred CcccCCCCccCCCCceecCCCcEEEEeccccccc-hhhhhhc---CeEEEEecChHHHHHHHHhhCccccCCCHHHHHHH
Q 022073 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d-~~~~~~~---d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 204 (303)
.. ... .........+|+||...... ..+.+.+ +.+||+++|.+++++|+..|+....+...+.+...
T Consensus 67 ~~----~~~-----~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r 137 (179)
T 3lw7_A 67 RL----CVE-----ELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR 137 (179)
T ss_dssp HH----HHH-----HHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHH
T ss_pred HH----HHH-----HHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHH
Confidence 00 000 00013456789999622111 1233333 48999999999999999999754445566666655
Q ss_pred HhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHH
Q 022073 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (303)
Q Consensus 205 ~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~ 247 (303)
+....... ..++...||++|+++++-+...+.+.+.+..
T Consensus 138 ~~~~~~~~----~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 138 DREELKLG----IGEVIAMADYIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HHHHHHHT----HHHHHHTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHhhhccC----hHhHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 43211000 1223578999999876434444555555543
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.46 E-value=2.4e-14 Score=119.66 Aligned_cols=139 Identities=11% Similarity=0.191 Sum_probs=93.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C---------------EEEEeCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R---------------VVLVNQDS 84 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~---------------~~~l~~D~ 84 (303)
++++|++++|.. +.+..++..+.++.+++|.|+||||||||++.|++.+.+. | +.++.++.
T Consensus 11 l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 11 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp EEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred EEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 455666666633 4555666669999999999999999999999999988653 1 33455543
Q ss_pred -CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCc-cccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 85 -FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 85 -~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~-v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
++..++..+...+....+.. ..+.+.+.+.++.+..... -....+|.++.+|+..+.+.+.+++++++|||++++|
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred cCCCCCCHHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 23445555554332111111 1224556677777654432 2234678888888877788889999999999999995
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 166 ~~ 167 (214)
T 1sgw_A 166 ED 167 (214)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 38
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.46 E-value=6.2e-14 Score=116.39 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=92.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhC-------
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH------- 122 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~------- 122 (303)
+|+|+|++||||||+++.|++.+ ++.+++.|.+++....... .....++ +.+.+.+.+..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g~~~~d~d~~~~~~~~~~~--~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 73 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---GVPYLSSGLLYRAAAFLAL--RAGVDPG-----DEEGLLALLEGLGVRLLAQAE 73 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHHHHHHH--HHTCCTT-----CHHHHHHHHHHTTCEEECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCceeccchHHHhhhhhhH--hcCCCCC-----CHHHHHHHHHhCceeeeecCC
Confidence 89999999999999999999998 6888999887643211100 0111111 12233333333221
Q ss_pred -------CCccccCcccC---------CCCccC----CCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHH
Q 022073 123 -------GQAVDIPNYDF---------KSYKNN----VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVR 182 (303)
Q Consensus 123 -------~~~v~~p~~~~---------~~~~~~----~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~ 182 (303)
++.+....... ..+..+ ........ ..+|+||+... ..+.+.+|++|||++|.+++
T Consensus 74 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~~ 149 (208)
T 3ake_A 74 GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--TAVFPEAAHKFYLTASPEVR 149 (208)
T ss_dssp CCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--CCCCTTCSEEEEEECCHHHH
T ss_pred CceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--EEEecCCcEEEEEECCHHHH
Confidence 00000000000 000000 00000011 57899999765 24456689999999999999
Q ss_pred HHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccccc-EEecCCCCC-HHHHHHHHHH
Q 022073 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDN-HVAIDLIVQH 244 (303)
Q Consensus 183 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~-~~~~~~~v~~ 244 (303)
++|+..|.. .+.+.....+..+.......+ ...+| ++|++++.+ +...+.+.+.
T Consensus 150 ~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~~~~~ee~~~~I~~~ 205 (208)
T 3ake_A 150 AWRRARERP----QAYEEVLRDLLRRDERDKAQS----APAPDALVLDTGGMTLDEVVAWVLAH 205 (208)
T ss_dssp HHHHHHTSS----SCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETTTSCHHHHHHHHHHH
T ss_pred HHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 999998853 334444444443221111111 45677 999887523 3334444443
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.46 E-value=2.6e-14 Score=120.91 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=90.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQ 92 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~~~~~~~ 92 (303)
++++|++++|.....+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++......+..
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~ 86 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIK 86 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHH
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHH
Confidence 4566777766533345666677779999999999999999999999999998753 24566776544334666
Q ss_pred HHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCc--c--ccCcccCCCCccCCCCceecCCCcEEEEecccc
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~--v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~ 159 (303)
+...++.. +......+.+.... .+.. + ....+|.++.+|+..+++.+.+++++++|+|++
T Consensus 87 enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 87 ENIIFGVS-------YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp HHHHTTSC-------CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred HHhhccCC-------cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 65544311 11111122222111 1000 0 124678888888877788889999999999999
Q ss_pred ccchh
Q 022073 160 FHDSR 164 (303)
Q Consensus 160 ~~d~~ 164 (303)
++|+.
T Consensus 160 ~LD~~ 164 (229)
T 2pze_A 160 YLDVL 164 (229)
T ss_dssp TSCHH
T ss_pred CCCHH
Confidence 99764
No 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.45 E-value=6.8e-13 Score=109.78 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=89.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
..++.+|+|+|++||||||+++.|++.+ +.++++.|.+... .........+.|+. ......+..+..
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~--~~~~~~~~g~~~~~------~~~~~~~~~~~~-- 92 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP--ENIATMQRGIPLTD------EDRWPWLRSLAE-- 92 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH--HHHHHHHTTCCCCH------HHHHHHHHHHHH--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH--HHHHHHhcCCCCCC------cccccHHHHHHH--
Confidence 4567899999999999999999999998 6788998887521 11111122333321 111111111110
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc------CeEEEEecChHHHHHHHHhhCccccCCCH
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM------NMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~------d~~I~v~~~~~~~~~R~~~R~~~~~~~~~ 198 (303)
+. .........+|++.... .+..++.+ ..+||+++|.+++.+|+.+|... ....
T Consensus 93 -~~---------------~~~~~~g~~viid~~~~--~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~--~~~~ 152 (200)
T 4eun_A 93 -WM---------------DARADAGVSTIITCSAL--KRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGH--FMPA 152 (200)
T ss_dssp -HH---------------HHHHHTTCCEEEEECCC--CHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCC--SSCG
T ss_pred -HH---------------HHHHhcCCCEEEEchhh--hHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccC--CCCH
Confidence 00 00011112244454332 23222222 26799999999999999888642 2234
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
+....++.... | ++...+|++|+++. .++++++.|.+.+..
T Consensus 153 ~~l~~~~~~~~-~-------~~~~~~~~~Id~~~----~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 153 SLLQSQLATLE-A-------LEPDESGIVLDLRQ----PPEQLIERALTWLDI 193 (200)
T ss_dssp GGHHHHHHHCC-C-------CCTTSCEEEEETTS----CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC-C-------CCCCCCeEEEECCC----CHHHHHHHHHHHHHh
Confidence 44445554433 1 23456899998764 345555666555543
No 41
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.45 E-value=1.4e-14 Score=129.73 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=91.5
Q ss_pred ccccCcccccCCCC--CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCCCCCCHHHHH--
Q 022073 21 FHMDGLEVRNKETG--QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELA-- 95 (303)
Q Consensus 21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~~~~~~~~~~-- 95 (303)
++++|++++|.... .+.+..++..+.+|.+++|.|+||||||||+++|++.+.+. |-+.++..+.. .++..+..
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~-~~~~~~~~~~ 103 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT-TLSESELTKA 103 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS-SCCHHHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC-cCCHHHHHHH
Confidence 45566666664322 13455666669999999999999999999999999988763 33444433222 12222211
Q ss_pred -hhcccCCCCCC----------------------cccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCc
Q 022073 96 -RVHEYNFDHPD----------------------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 96 -~~~~~~f~~p~----------------------~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
..-.+.|+++. .-..+...+.|+.+...... ....+|.++.+|+.++++.+.+++
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11223333322 11123344556655543322 334688899999888888899999
Q ss_pred EEEEeccccccchh
Q 022073 151 VILLEGILVFHDSR 164 (303)
Q Consensus 151 vvildg~~~~~d~~ 164 (303)
++++|||++++|+.
T Consensus 184 lLLlDEPTs~LD~~ 197 (366)
T 3tui_C 184 VLLCDQATSALDPA 197 (366)
T ss_dssp EEEEESTTTTSCHH
T ss_pred EEEEECCCccCCHH
Confidence 99999999999985
No 42
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.45 E-value=1.5e-14 Score=125.03 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=82.9
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---------------------CCCCCHHHHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF---------------------YHNLTEQELA 95 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~---------------------~~~~~~~~~~ 95 (303)
+..++.++.+|.+++|.|+||||||||++.|++.+.+. |-+.+...+. +..++..+..
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI 106 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHH
Confidence 33444449999999999999999999999999988653 3344433221 1223333333
Q ss_pred hhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecC------CCcEEEEeccccccchhh
Q 022073 96 RVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN------PSDVILLEGILVFHDSRV 165 (303)
Q Consensus 96 ~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~------~~~vvildg~~~~~d~~~ 165 (303)
.++...+ ....+.+.+.+.++.+...... ....+|.++.+|+..+.+.+. +++++++|||++++|+..
T Consensus 107 ~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~ 182 (266)
T 4g1u_C 107 QMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH 182 (266)
T ss_dssp HGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHH
T ss_pred Hhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHH
Confidence 3322211 1122345566677766544322 334688889999877777777 999999999999997653
No 43
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.45 E-value=1.3e-14 Score=125.23 Aligned_cols=143 Identities=10% Similarity=0.061 Sum_probs=88.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC--------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF-------------- 85 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~-------------- 85 (303)
++++|++++|.+ .+.+..++..+.++.+++|.|+||||||||++.|++.+.+. |-+.++..+.
T Consensus 25 l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 25 IDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred EEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 556666666632 23556666669999999999999999999999999988753 3333333221
Q ss_pred ---------CCCCCHHHHHhhcc-cCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEE
Q 022073 86 ---------YHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (303)
Q Consensus 86 ---------~~~~~~~~~~~~~~-~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvi 153 (303)
+..++..+...++. .....+.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.++++++
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 12223333222211 000000001122344555555443222 234678888888887788889999999
Q ss_pred Eeccccccchhh
Q 022073 154 LEGILVFHDSRV 165 (303)
Q Consensus 154 ldg~~~~~d~~~ 165 (303)
+|||++++|+..
T Consensus 183 LDEPts~LD~~~ 194 (263)
T 2olj_A 183 FDEPTSALDPEM 194 (263)
T ss_dssp EESTTTTSCHHH
T ss_pred EeCCcccCCHHH
Confidence 999999997653
No 44
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.44 E-value=3.5e-14 Score=121.45 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred cccccCc-ccccCCCCCCCccccccCCCC---cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 20 GFHMDGL-EVRNKETGQPTISAAENLHRQ---PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 20 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
-+.++++ +++| +...+.+..++..+.+ +.+|+|+|++||||||+++.|++.+ +..+++.|.++
T Consensus 17 ~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l---g~~~~d~d~~~ 83 (250)
T 3nwj_A 17 LLETGSLLHSPF-DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL---GYTFFDCDTLI 83 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred ceEEcceeeEEe-cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc---CCcEEeCcHHH
Confidence 3566777 7766 2233456666667888 8999999999999999999999998 67888887654
No 45
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.44 E-value=8.5e-15 Score=127.00 Aligned_cols=145 Identities=9% Similarity=0.036 Sum_probs=91.6
Q ss_pred cccccCcccccCC-CCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 20 GFHMDGLEVRNKE-TGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
-++++|++++|.+ ...+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. | +
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 3788999998865 2245788889999999999999999999999999999988753 2 2
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCccc----HHHHHHHHHHhh--CCC--ccccCcccCCCCccCCCCceecCCC
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLR--HGQ--AVDIPNYDFKSYKNNVFPARRVNPS 149 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d----~~~l~~~l~~l~--~~~--~v~~p~~~~~~~~~~~~~~~~~~~~ 149 (303)
.++.++......+..+...++........... ...+.+.+..+. ... .-....+|.++.+|+..+++.+.++
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 33344332222333333332211110000000 001122333331 111 1223467888888888888888999
Q ss_pred cEEEEeccccccchh
Q 022073 150 DVILLEGILVFHDSR 164 (303)
Q Consensus 150 ~vvildg~~~~~d~~ 164 (303)
+++++|+|++++|+.
T Consensus 176 ~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 176 RLLILDNATSALDAG 190 (271)
T ss_dssp SEEEEESTTTTCCHH
T ss_pred CEEEEECCccCCCHH
Confidence 999999999999654
No 46
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.44 E-value=1.4e-14 Score=123.19 Aligned_cols=140 Identities=13% Similarity=0.164 Sum_probs=91.9
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQ 92 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~~~~~~~ 92 (303)
++++|++++|.....+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++.++...+..
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~ 83 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLR 83 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHH
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHH
Confidence 4566667666433335666667779999999999999999999999999988642 25567777666556666
Q ss_pred HHHhhcccCCCCCCcccHHHHHHH---HHHhhC---CC----ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc
Q 022073 93 ELARVHEYNFDHPDAFDTEKLLSS---MEKLRH---GQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (303)
Q Consensus 93 ~~~~~~~~~f~~p~~~d~~~l~~~---l~~l~~---~~----~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d 162 (303)
+...+... +. . -......+. +..+.. +. .-....+|.++.+|+..+++.+.+++++++|+|++++|
T Consensus 84 enl~~~~~-~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 84 ENILFGCQ-LE--E-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHHTTSC-CC--T-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHhhCccc-cC--H-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 66554321 11 1 111111111 111111 00 11234678888888877788889999999999999996
Q ss_pred hh
Q 022073 163 SR 164 (303)
Q Consensus 163 ~~ 164 (303)
+.
T Consensus 160 ~~ 161 (237)
T 2cbz_A 160 AH 161 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.44 E-value=4.1e-14 Score=127.56 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=90.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEe
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVN 81 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~ 81 (303)
++++|++++|.+ .+.+..++..+.++.+++|.|+||||||||+++|++.+.+. | +.++.
T Consensus 12 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 12 VKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 444555555422 12344455559999999999999999999999999988653 2 33444
Q ss_pred CCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 82 QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 82 ~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
++. +++.++..+...++......+.....+...+.++.+...... ....+|.++.+|+..+++.+.+++++++|||+
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 432 234455555544332111111111123455666666544322 33468999999988888888999999999999
Q ss_pred cccchhh
Q 022073 159 VFHDSRV 165 (303)
Q Consensus 159 ~~~d~~~ 165 (303)
+.+|+..
T Consensus 170 s~LD~~~ 176 (372)
T 1v43_A 170 SNLDAKL 176 (372)
T ss_dssp TTSCHHH
T ss_pred ccCCHHH
Confidence 9999854
No 48
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.44 E-value=2.6e-14 Score=128.28 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=91.6
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------------------ 75 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~------------------ 75 (303)
++.|++.. ++|+|| + ++++.+++|.|+||||||||++.|++.+.+.
T Consensus 10 ~~~y~~~~vl~~vsl-----~----------i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 10 KKYFGKVKAVDGVSF-----E----------VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp EEEETTEEEEEEEEE-----E----------ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGG
T ss_pred EEEECCEEEEeeeEE-----E----------EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhh
Confidence 45555443 466666 5 9999999999999999999999999988652
Q ss_pred -CEEEEeCCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcE
Q 022073 76 -RVVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 76 -~~~~l~~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~v 151 (303)
++.++.++. +++.++..+...++......+..-..+...+.++.+...... ....+|.++.+|+..+++.+.++++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 244444543 334456655554432111111111123456667766554322 3346888999998888888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|||++.+|+..
T Consensus 155 LLLDEP~s~LD~~~ 168 (359)
T 2yyz_A 155 LLFDEPLSNLDANL 168 (359)
T ss_dssp EEEESTTTTSCHHH
T ss_pred EEEECCcccCCHHH
Confidence 99999999999854
No 49
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.44 E-value=1.6e-14 Score=124.31 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=79.6
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC---------------------CC-CCCCCCHHHHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ---------------------DS-FYHNLTEQELA 95 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~---------------------D~-~~~~~~~~~~~ 95 (303)
..++.++.+|.+++|.|+||||||||++.|++.+.+. |-+.++. +. ++..++..+..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 103 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENL 103 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHH
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHH
Confidence 3333349999999999999999999999999988753 3333332 21 11223333333
Q ss_pred hhcccC--CC-----------CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccc
Q 022073 96 RVHEYN--FD-----------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (303)
Q Consensus 96 ~~~~~~--f~-----------~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~ 160 (303)
.+.... .. .+.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|||+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 183 (257)
T 1g6h_A 104 LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183 (257)
T ss_dssp HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 222111 00 01111123455566666443222 3346888888888887888899999999999999
Q ss_pred cchhh
Q 022073 161 HDSRV 165 (303)
Q Consensus 161 ~d~~~ 165 (303)
+|+..
T Consensus 184 LD~~~ 188 (257)
T 1g6h_A 184 VAPGL 188 (257)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 97653
No 50
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.44 E-value=1.9e-14 Score=123.50 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=89.7
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCC-CCCCCHHHHHhhcccCC-C---
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSF-YHNLTEQELARVHEYNF-D--- 103 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~-~~~~~~~~~~~~~~~~f-~--- 103 (303)
.+..++.++.+|.+++|.|+||||||||++.|++.+.+. .+.++.++.. +...+..+...+....+ .
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 99 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA 99 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTC
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccccc
Confidence 344444449999999999999999999999999998753 3556777653 34567777655543211 1
Q ss_pred CCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 104 HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 104 ~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.+...+.+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++|||++++|+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 100 KPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163 (253)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11222334566677766543322 334688888888888888889999999999999997653
No 51
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.43 E-value=3.2e-14 Score=127.80 Aligned_cols=126 Identities=17% Similarity=0.069 Sum_probs=83.2
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEeCCC-CCCCCCHHHHHhhcc
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVNQDS-FYHNLTEQELARVHE 99 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~~D~-~~~~~~~~~~~~~~~ 99 (303)
.++..+.++.+++|.|+||||||||+++|++.+.+. | +.++.++. +++.++..+...++.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 333339999999999999999999999999988653 2 33444432 233445554433321
Q ss_pred cCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 100 ~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.....+..-..+...+.++.+...... ....+|.++.+|+..+++.+.+++++++|||++.+|+..
T Consensus 101 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (362)
T 2it1_A 101 ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168 (362)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 111111111123455666666554322 334688899999888888889999999999999999854
No 52
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.43 E-value=9.3e-15 Score=124.46 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=84.1
Q ss_pred CcccccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC---------
Q 022073 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS--------- 84 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~--------- 84 (303)
++.|++. ++|+|| + +.+ .+++|.|+||||||||++.|++.+.+. |-+.++..+
T Consensus 8 ~~~y~~~-l~~isl-----~----------i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 8 EKRLGNF-RLNVDF-----E----------MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp EEEETTE-EEEEEE-----E----------ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTS
T ss_pred EEEeCCE-EeeeEE-----E----------ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhC
Confidence 4555543 677777 5 888 899999999999999999999998753 333333211
Q ss_pred ----------CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEE
Q 022073 85 ----------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (303)
Q Consensus 85 ----------~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vv 152 (303)
++..++..+...+....+. ...+.+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1122233333322211000 001123445566665543322 33468888888888888888999999
Q ss_pred EEeccccccchhh
Q 022073 153 LLEGILVFHDSRV 165 (303)
Q Consensus 153 ildg~~~~~d~~~ 165 (303)
++|||++++|+..
T Consensus 149 lLDEPts~LD~~~ 161 (240)
T 2onk_A 149 LLDEPLSAVDLKT 161 (240)
T ss_dssp EEESTTSSCCHHH
T ss_pred EEeCCcccCCHHH
Confidence 9999999997653
No 53
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.43 E-value=4.2e-14 Score=135.55 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=96.7
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++++|++...+.+.+++..+++|.+++|.|+||||||||++.|.+.+.|. | +
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 458899999999754456889999999999999999999999999999999988753 3 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-------------ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v-------------~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+....+..+...++.. + ..+.+.+.+.++.....+.+ ....+|.++.+|+..+++
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred EEEcCCCccccccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 34444433322333333332210 1 13334444444433221111 113578888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++.+|+.
T Consensus 495 l~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTE 514 (582)
T ss_pred HHcCCCEEEEECccccCCHH
Confidence 88999999999999999654
No 54
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.42 E-value=2.6e-14 Score=127.99 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=91.4
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C------------------EEEEe
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R------------------VVLVN 81 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~------------------~~~l~ 81 (303)
++++|++++|++ ..+.+..++.++.++.+++|.|+||||||||+++|++.+.+. | +.++.
T Consensus 15 l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 15 IEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEe
Confidence 344555555521 113445555559999999999999999999999999988653 2 33344
Q ss_pred CCC-CCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 82 QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 82 ~D~-~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
++. +++.++..+...++......+..-..+.+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|||+
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 432 334445555443321111111111123455666666543322 33468889999988888888999999999999
Q ss_pred cccchhh
Q 022073 159 VFHDSRV 165 (303)
Q Consensus 159 ~~~d~~~ 165 (303)
+.+|+..
T Consensus 174 s~LD~~~ 180 (355)
T 1z47_A 174 AAIDTQI 180 (355)
T ss_dssp CCSSHHH
T ss_pred ccCCHHH
Confidence 9999853
No 55
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.42 E-value=3.5e-14 Score=126.99 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=81.6
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------------EEeCCC-CCCCCCHHHHHhhccc
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------------LVNQDS-FYHNLTEQELARVHEY 100 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~------------------~l~~D~-~~~~~~~~~~~~~~~~ 100 (303)
++..+.++.+++|.|+||||||||+++|++.+.+. |-+ ++.++. +++.++..+...++..
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 33339999999999999999999999999988753 223 333332 2233444444332211
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 101 NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 101 ~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
....+. + +.+.+.++.+...... ....+|.++.+|+..+++.+.+++++++|||++.+|+..
T Consensus 99 ~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 99 MKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 111111 1 4556667766554322 334688899999888888889999999999999999854
No 56
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.41 E-value=1.4e-12 Score=108.04 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=34.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..++.+|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~~d~~~ 50 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAGDLL 50 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEeHHHHH
Confidence 4567899999999999999999999988 67888888654
No 57
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.41 E-value=4.6e-12 Score=102.27 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=81.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHh-hcccCCCCCCcccHHHHHHHHHHhhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELAR-VHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~-~~~~~f~~p~~~d~~~l~~~l~~l~~~ 123 (303)
..++.+|+|+|++||||||+++.|++.+ +..+++.|.+.+. ..... .....+. .......+..+..
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~~---~~~~~~~~g~~~~------~~~~~~~~~~~~~- 71 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPR---RNIEKMASGEPLN------DDDRKPWLQALND- 71 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCCH---HHHHHHHTTCCCC------HHHHHHHHHHHHH-
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccch---HHHHHhhcCcCCC------ccccccHHHHHHH-
Confidence 4568899999999999999999999988 6889999886531 11111 1112221 1111111211110
Q ss_pred CccccCcccCCCCccCCCCceecCCCcEEEEeccccccc--hhhhhh-cC-eEEEEecChHHHHHHHHhhCccccCCCHH
Q 022073 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL-MN-MKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (303)
Q Consensus 124 ~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d--~~~~~~-~d-~~I~v~~~~~~~~~R~~~R~~~~~~~~~~ 199 (303)
+ . .........+|++....... ..+.+. .+ .+||+++|.+++++|+..|+... ....
T Consensus 72 --~-------------~--~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~--~~~~ 132 (175)
T 1knq_A 72 --A-------------A--FAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF--FKTQ 132 (175)
T ss_dssp --H-------------H--HHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC--CCHH
T ss_pred --H-------------H--HHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC--CchH
Confidence 0 0 00011122355554322100 112222 25 79999999999999999886322 1233
Q ss_pred HHHHHHhhccccchhhccccccccccEEecCCC
Q 022073 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG 232 (303)
Q Consensus 200 ~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~ 232 (303)
....++.....+. +...+|++|+++.
T Consensus 133 ~~~~~~~~~~~~~-------~~~~~~~~Id~~~ 158 (175)
T 1knq_A 133 MLVTQFETLQEPG-------ADETDVLVVDIDQ 158 (175)
T ss_dssp HHHHHHHHCCCCC-------TTCTTEEEEECSS
T ss_pred HHHHHHHhhhCcc-------cCCCCeEEEeCCC
Confidence 3334443322211 3456899998774
No 58
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.41 E-value=4.8e-14 Score=127.89 Aligned_cols=146 Identities=11% Similarity=0.172 Sum_probs=101.3
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhc
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH 98 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~ 98 (303)
+.++++|++++|+....+.+..++..+.++.+++|.|+||||||||+++|++.+...|-+.++..+.. .+...+....-
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~-~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWD-SITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTT-SSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECC-cCChHHHhCCE
Confidence 45889999999975556788999999999999999999999999999999998764344555554432 23333333333
Q ss_pred ccCCCCCCc--------------ccHHHHHHHHHHhhCCCcc-ccCc------------ccCCCCccCCCCceecCCCcE
Q 022073 99 EYNFDHPDA--------------FDTEKLLSSMEKLRHGQAV-DIPN------------YDFKSYKNNVFPARRVNPSDV 151 (303)
Q Consensus 99 ~~~f~~p~~--------------~d~~~l~~~l~~l~~~~~v-~~p~------------~~~~~~~~~~~~~~~~~~~~v 151 (303)
.+.|+++.- ...+...+.++.+...... ..|. +|.++.+|+..+++.+.++++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 344443321 2234444555544332211 1222 788888998888888899999
Q ss_pred EEEeccccccchhh
Q 022073 152 ILLEGILVFHDSRV 165 (303)
Q Consensus 152 vildg~~~~~d~~~ 165 (303)
+++|+|++.+|+..
T Consensus 177 LLLDEPts~LD~~~ 190 (390)
T 3gd7_A 177 LLLDEPSAHLDPVT 190 (390)
T ss_dssp EEEESHHHHSCHHH
T ss_pred EEEeCCccCCCHHH
Confidence 99999999998754
No 59
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.41 E-value=9.6e-15 Score=131.00 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=82.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-----------------------EEEEeCCC-CCCCCCHHHHHhhcc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-----------------------VVLVNQDS-FYHNLTEQELARVHE 99 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-----------------------~~~l~~D~-~~~~~~~~~~~~~~~ 99 (303)
+.++.+++|.|+||||||||+++|++.+.+. | +.++.++. +++.++..+...++.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 9999999999999999999999999987652 1 23344432 334456666554432
Q ss_pred cCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 100 YNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 100 ~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
.....+.....+...+.++.+...... ....+|.++.+|+..+++.+.+++++++|||++.+|+..
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 175 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGG
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 211111111234455667666544322 334688899999888888889999999999999998753
No 60
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=112.70 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH--H-HHhhcccCCCCCCcccHHHHHHHHHHhh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ--E-LARVHEYNFDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~--~-~~~~~~~~f~~p~~~d~~~l~~~l~~l~ 121 (303)
.+++.+|+|+|++||||||+++.|++.+ +..+++.|++++..... . ......+ +........+.+...+...-
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~i 84 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY---GFTHLSTGELLREELASESERSKLIRDI-MERGDLVPSGIVLELLKEAM 84 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHTCHHHHHHHHH-HHTTCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHHHHHhCCHHHHHHHHH-HHcCCcCCHHHHHHHHHHHH
Confidence 4456799999999999999999999998 67888888765321100 0 0000000 00000111111212111100
Q ss_pred CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccch--hhhh---hcCeEEEEecChHHHHHHHHhhCc
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RVRE---LMNMKIFVDTDADVRLARRIRRDT 191 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~--~~~~---~~d~~I~v~~~~~~~~~R~~~R~~ 191 (303)
.........+|+||....... .+.+ .+|++|||++|.+++.+|+..|+.
T Consensus 85 ---------------------~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 85 ---------------------VASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp ---------------------HHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred ---------------------hcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 001123467889975432111 1222 578999999999999999998863
No 61
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.40 E-value=4.2e-13 Score=110.07 Aligned_cols=37 Identities=27% Similarity=0.541 Sum_probs=32.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
++.+|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~ 38 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GYTHLSAGELL 38 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHH
Confidence 36799999999999999999999988 67888887654
No 62
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.40 E-value=7.7e-14 Score=117.01 Aligned_cols=183 Identities=16% Similarity=0.257 Sum_probs=94.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCH-----------HHHHhhcccCC-----------CCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE-----------QELARVHEYNF-----------DHP 105 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~-----------~~~~~~~~~~f-----------~~p 105 (303)
+.+|+|+|++||||||+++.|++.+ ++.+++.|.+++..+. .+........| ...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~---g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL---SMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCC
Confidence 4689999999999999999999988 6889999887642210 00000000001 000
Q ss_pred ----CcccHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHH
Q 022073 106 ----DAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV 181 (303)
Q Consensus 106 ----~~~d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~ 181 (303)
..+....+.+.+..+. .+|......... ...+.....++++|+... ..+.+.+|++|||++|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-----~~p~v~~~~~~~----~~~~~~~~~~vi~g~~~~--~~~~~~~~~vi~l~a~~e~ 148 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVA-----SKEPVRSFAVKK----QKELAAEKGIVMDGRDIG--TVVLPDADLKVYMIASVEE 148 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHH-----TSHHHHHHHHHH----HHHHHTTCCEEEEESSCC--CCCCTTCSEEEEEECCHHH
T ss_pred ccchhhcCcHHHHHHHHHhc-----cCHHHHHHHHHH----HHHhccCCcEEEEcCCcc--ceecCCCCEEEEEECCHHH
Confidence 0011111111111110 001100000000 001112345788887432 2344567899999999999
Q ss_pred HHHHHHhhCccccCC--CHHHHHHHHhhccccchhhcccccccccc-EEecCCCCC-HHHHHHHHHHH
Q 022073 182 RLARRIRRDTVEKGR--DIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDN-HVAIDLIVQHI 245 (303)
Q Consensus 182 ~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~p~~~~~i~~~~~~aD-~iI~~~~~~-~~~~~~~v~~i 245 (303)
+.+|+.+|. ..++. +.+.+...+..+..+...+.+.|....+| ++|++++.+ +...+.+.+.+
T Consensus 149 ~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l 215 (219)
T 2h92_A 149 RAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMV 215 (219)
T ss_dssp HHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 999986531 11232 45555555654433444444455555577 999877433 23334444433
No 63
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.40 E-value=1e-13 Score=118.32 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=85.8
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC------------------
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ------------------ 82 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~------------------ 82 (303)
+++|++++|++ ..+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. |-+.++.
T Consensus 3 ~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 3 SARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 34566665531 123555666669999999999999999999999999988653 3343332
Q ss_pred --CCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-------------ccCcccCCCCccCCCCceecC
Q 022073 83 --DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 83 --D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v-------------~~p~~~~~~~~~~~~~~~~~~ 147 (303)
+......+..+...++ . .+ ..+.+.+.+.+..+...... ....+|.++.+|+..+++.+.
T Consensus 82 ~q~~~l~~~tv~enl~~~---~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYG---L-EG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CCSSCCCCEEHHHHTTSC---T-TS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHHHHHhhh---c-cC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 2211111222222111 0 11 13344455556555433222 113578888888877778889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++++|+|++++|+.
T Consensus 157 ~p~lllLDEPts~LD~~ 173 (243)
T 1mv5_A 157 NPKILMLDEATASLDSE 173 (243)
T ss_dssp CCSEEEEECCSCSSCSS
T ss_pred CCCEEEEECCcccCCHH
Confidence 99999999999999654
No 64
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.40 E-value=4.8e-14 Score=121.68 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=77.3
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC---------------------------------
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF--------------------------------- 85 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~--------------------------------- 85 (303)
.++..+.+|.+++|.|+||||||||++.|++.+.+. |-+.+...+.
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 103 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN 103 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcc
Confidence 333349999999999999999999999999988753 3344433222
Q ss_pred -CCCCCHHHHHhhcc-cCCCCCCcccHHHHHHHHHHhhCCCc-c--ccCcccCCCCccCCCCceecCCCcEEEEeccccc
Q 022073 86 -YHNLTEQELARVHE-YNFDHPDAFDTEKLLSSMEKLRHGQA-V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (303)
Q Consensus 86 -~~~~~~~~~~~~~~-~~f~~p~~~d~~~l~~~l~~l~~~~~-v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~ 160 (303)
+..++..+...+.. .....+.....+...+.++.+..... . ....+|.++.+|+..+.+.+.+++++++|||+++
T Consensus 104 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 104 LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred cCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11222222221110 00000000112234445555544332 2 2335788888888888888899999999999999
Q ss_pred cchhh
Q 022073 161 HDSRV 165 (303)
Q Consensus 161 ~d~~~ 165 (303)
+|+..
T Consensus 184 LD~~~ 188 (262)
T 1b0u_A 184 LDPEL 188 (262)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 97653
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.40 E-value=2.5e-14 Score=148.35 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=125.8
Q ss_pred ccccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q 022073 17 HFSGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-------------------- 75 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-------------------- 75 (303)
..+.++|+|++|+|++. +.|.+.+++.++++|..|||+|++|||||||+++|.+.+.+.
T Consensus 1073 ~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 34679999999999864 457999999999999999999999999999999999988752
Q ss_pred -CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCcccc----CcccCCCCccCCC
Q 022073 76 -RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVF 141 (303)
Q Consensus 76 -~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~v~~----p~~~~~~~~~~~~ 141 (303)
.+.++++|.+...-+..++..++. +|...+.+.+.+.++... .|-+..+ ..+|.++.||+..
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred hheEEECCCCEeeCccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 466777777776656665544331 233455666665554332 2222221 2467777888777
Q ss_pred CceecCCCcEEEEeccccccchhhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccc
Q 022073 142 PARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTK 221 (303)
Q Consensus 142 ~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~ 221 (303)
+++.+.+++++|+||+++.+| ...+..+.+.+++ ...+++.-.+.|+.. +.
T Consensus 1229 ARAllr~~~ILiLDEaTSaLD--------------~~tE~~Iq~~l~~--~~~~~TvI~IAHRLs-------------Ti 1279 (1321)
T 4f4c_A 1229 ARALVRNPKILLLDEATSALD--------------TESEKVVQEALDR--AREGRTCIVIAHRLN-------------TV 1279 (1321)
T ss_dssp HHHHHSCCSEEEEESCCCSTT--------------SHHHHHHHHHHTT--TSSSSEEEEECSSSS-------------TT
T ss_pred HHHHHhCCCEEEEeCccccCC--------------HHHHHHHHHHHHH--HcCCCEEEEeccCHH-------------HH
Confidence 888889999999999999984 4445555565654 234555554444332 24
Q ss_pred ccccEEec
Q 022073 222 KYADIIIP 229 (303)
Q Consensus 222 ~~aD~iI~ 229 (303)
..||.|+.
T Consensus 1280 ~~aD~I~V 1287 (1321)
T 4f4c_A 1280 MNADCIAV 1287 (1321)
T ss_dssp TTCSEEEE
T ss_pred HhCCEEEE
Confidence 67886664
No 66
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.39 E-value=6.8e-13 Score=108.62 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..+.+|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~ 41 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF---GWVHLSAGDLL 41 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh---CCeEeeHHHHH
Confidence 356899999999999999999999988 67888887654
No 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.38 E-value=5.7e-14 Score=121.09 Aligned_cols=144 Identities=6% Similarity=0.076 Sum_probs=89.5
Q ss_pred cccccCcccccCCCC-CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhc
Q 022073 20 GFHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH 98 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~ 98 (303)
.++++|++++|.+.. .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+.|-+.++..+.. ..........-
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~-~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN-KYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGG-GBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhh-hcCHHHHhccE
Confidence 367788888886432 3577788888999999999999999999999999998865444444332211 01111111111
Q ss_pred ccCCCCCC---------------cccHHHHHHHHHHhhCCCc-------------cccCcccCCCCccCCCCceecCCCc
Q 022073 99 EYNFDHPD---------------AFDTEKLLSSMEKLRHGQA-------------VDIPNYDFKSYKNNVFPARRVNPSD 150 (303)
Q Consensus 99 ~~~f~~p~---------------~~d~~~l~~~l~~l~~~~~-------------v~~p~~~~~~~~~~~~~~~~~~~~~ 150 (303)
.+.++.|. ....+.+.+.++.+..... -....+|.++.+|+..+++.+.+++
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 12222111 1122333333332211100 0123678888888877788889999
Q ss_pred EEEEeccccccchh
Q 022073 151 VILLEGILVFHDSR 164 (303)
Q Consensus 151 vvildg~~~~~d~~ 164 (303)
++++|+|++++|+.
T Consensus 176 lllLDEPts~LD~~ 189 (260)
T 2ghi_A 176 IVIFDEATSSLDSK 189 (260)
T ss_dssp EEEEECCCCTTCHH
T ss_pred EEEEECccccCCHH
Confidence 99999999999664
No 68
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.37 E-value=1.1e-13 Score=132.46 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=100.5
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++++|++...+.+.+++..+++|.+++|+|+||||||||++.|.+.+.+. .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 458899999999877678899999999999999999999999999999999988763 35
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCcc----ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAV----DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~v----~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+....+..+...++. |. .+.+.+.+.++... .|-.. .-..+|.++.+|+..+++
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCccCcccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 5666665554445555544332 21 22233333333221 11111 112578888888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
...+++++++|||++.+|+.
T Consensus 492 l~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHH
T ss_pred HHcCCCEEEEECccccCCHH
Confidence 88999999999999999654
No 69
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.37 E-value=1.8e-12 Score=105.87 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH-hCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ-LHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~-l~~~~~~~l~~D~~~ 86 (303)
..++.+|+|+|++||||||+++.|++. + ++.+++.|.+.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~---g~~~id~d~~~ 46 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELD---GFQHLEVGKLV 46 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST---TEEEEEHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCEEeeHHHHH
Confidence 667889999999999999999999998 5 78999988654
No 70
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.37 E-value=4.2e-14 Score=135.50 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=96.8
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--------------------E
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------V 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--------------------~ 77 (303)
+.++++|++++|++...+.+.+++..+++|.+++|+|+||||||||++.|.+.+.+. | +
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 458899999999877778999999999999999999999999999999999998763 2 3
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHH---------hhCCCc--c--ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQA--V--DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~---------l~~~~~--v--~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+....+..+...++ .+. .+.+...+.++. +..+-. + ....+|.++.+|+..+++
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~-----~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWG-----RED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTT-----CSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred EEECCCCcCcCccHHHHHhcc-----CCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 344444443333333333222 121 222333333222 211211 1 113578888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++.+|+.
T Consensus 494 l~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHH
T ss_pred HHcCCCEEEEECCcccCCHH
Confidence 88999999999999999664
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.36 E-value=5e-14 Score=146.02 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=107.2
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~ 76 (303)
+.++++|++|+|+.. +.|.+.+++..+++|..++|+|++|||||||+++|.+.+.+. .
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 458899999999864 568999999999999999999999999999999999988763 3
Q ss_pred EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHH---------HHHHhhCCCcccc----CcccCCCCccCCCCc
Q 022073 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAVDI----PNYDFKSYKNNVFPA 143 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~---------~l~~l~~~~~v~~----p~~~~~~~~~~~~~~ 143 (303)
+.+++++.+...-+..++..++. |+ .+.+.+.+ .+..+..|-...+ -.+|.++.+|...++
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~-----~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGK-----EG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHH
T ss_pred ccccCCcceeeCCchhHHHhhhc-----cc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHH
Confidence 67788888887777777766543 32 33444443 3444444443322 247888888888888
Q ss_pred eecCCCcEEEEeccccccch
Q 022073 144 RRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~ 163 (303)
+...+++++|+|++++.+|+
T Consensus 568 Al~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCT
T ss_pred HHccCCCEEEEecccccCCH
Confidence 88899999999999999843
No 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.35 E-value=2.2e-13 Score=130.50 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=98.4
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++++|++...+.+.+++..+++|.+++|+|+||||||||++.|.+.+.|. .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 358899999999754356889999999999999999999999999999999988753 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCCcc-------------ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~~v-------------~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+....+..+...++.. + ..+.+.+.+.++.....+.+ ....+|.++.+|+..+++
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred eEEccCCcCCCCCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 45555544433444444433220 1 13344444444433221111 113578888888877788
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++.+|+.
T Consensus 495 l~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTE 514 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHH
T ss_pred HHhCCCEEEEECccccCCHH
Confidence 88999999999999999654
No 73
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.35 E-value=7.3e-14 Score=121.50 Aligned_cols=143 Identities=8% Similarity=-0.012 Sum_probs=86.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC-------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY------------- 86 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~------------- 86 (303)
++++|++++|.+ .+.+..++.++.+|.+++|.|+||||||||++.|++.+.+. |.+.+...+..
T Consensus 22 l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 22 IQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred EEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 445555555532 13455555559999999999999999999999999998753 34444432221
Q ss_pred ------------CCCCHHHHHhhcccC----CCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCC
Q 022073 87 ------------HNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (303)
Q Consensus 87 ------------~~~~~~~~~~~~~~~----f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~ 148 (303)
..++..+...++... +..+.....+.+.+.++.+...... ....+|.++.+|+..+.+.+.+
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 011222222211100 0001111123345556655443222 3346788888888888888899
Q ss_pred CcEEEEeccccccchhh
Q 022073 149 SDVILLEGILVFHDSRV 165 (303)
Q Consensus 149 ~~vvildg~~~~~d~~~ 165 (303)
++++++|||++++|+..
T Consensus 180 p~lLlLDEPts~LD~~~ 196 (279)
T 2ihy_A 180 PQVLILDEPAAGLDFIA 196 (279)
T ss_dssp CSEEEEESTTTTCCHHH
T ss_pred CCEEEEeCCccccCHHH
Confidence 99999999999997653
No 74
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.35 E-value=1.1e-13 Score=124.94 Aligned_cols=121 Identities=16% Similarity=0.095 Sum_probs=79.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE------------------------EEeCCC-CCCCCCHHHHHhhc
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV------------------------LVNQDS-FYHNLTEQELARVH 98 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~------------------------~l~~D~-~~~~~~~~~~~~~~ 98 (303)
+.++.+++|.|+||||||||+++|++.+.+. |-+ ++.++. +++.++..+...++
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 105 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 9999999999999999999999999988653 222 233332 23334554443332
Q ss_pred ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchhh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~ 165 (303)
......+.....+...+.++.+...... ....+|.++.+|+..+++.+.+++++++|||++.+|+..
T Consensus 106 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 106 LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 1111111111123455666666543322 334688899999888888889999999999999999854
No 75
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.34 E-value=1.1e-12 Score=107.86 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=67.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHH--HH-HhhcccCCCCCCcccHHHHHHHHHHhhC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ--EL-ARVHEYNFDHPDAFDTEKLLSSMEKLRH 122 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~--~~-~~~~~~~f~~p~~~d~~~l~~~l~~l~~ 122 (303)
.++.+|+|+|++||||||+++.|++.+ +..+++.|.+++..... .. ..+..+ +........+.+...+...-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~i- 81 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY---GYTHLSTGDLLRSEVSSGSARGKKLSEI-MEKGQLVPLETVLDMLRDAM- 81 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHTTCHHHHHHHHH-HHTTCCCCHHHHHHHHHHHH-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHHHHHcCChHHHHHHHH-HHcCCcCCHHHHHHHHHHHH-
Confidence 456799999999999999999999988 67888887755321000 00 000000 00000011111111111100
Q ss_pred CCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh-----hhhhcCeEEEEecChHHHHHHHHhhC
Q 022073 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-----VRELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 123 ~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~-----~~~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
.........+|+||.....+.. ....+|++||+++|.+++.+|+..|+
T Consensus 82 --------------------~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 82 --------------------VAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp --------------------HHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred --------------------HhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 0011234568888832221111 12457899999999999999998885
No 76
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.34 E-value=1.3e-11 Score=104.40 Aligned_cols=182 Identities=14% Similarity=0.078 Sum_probs=88.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHH--HHHHHHhhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL--LSSMEKLRH 122 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l--~~~l~~l~~ 122 (303)
..++.+|+|.|++||||||+++.|++.+.. +..++....-. -+.. ...+..+. ..+..++.... .-.......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~--~~~~-g~~i~~~~-~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG--GVPT-GEEIRKIV-LEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT--TCHH-HHHHHHHT-TC---CCHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC--CCch-HHHHHHHH-hCCCCCCHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999975 44333332111 1111 11111111 11111221111 111111110
Q ss_pred CCccccCcccCCCCccCCCCceecCCCcEEEEe----------ccccccchhh----------hhhcCeEEEEecChHHH
Q 022073 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLE----------GILVFHDSRV----------RELMNMKIFVDTDADVR 182 (303)
Q Consensus 123 ~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvild----------g~~~~~d~~~----------~~~~d~~I~v~~~~~~~ 182 (303)
-. . .....+....++|+| |.....+... ...+|++||+++|++++
T Consensus 98 ~~-------------~--~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~ 162 (229)
T 4eaq_A 98 LV-------------L--KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVG 162 (229)
T ss_dssp CC-------------C--CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHH
T ss_pred HH-------------H--HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence 00 0 001112344677777 5322222221 12468999999999999
Q ss_pred HHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHh
Q 022073 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (303)
Q Consensus 183 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l 249 (303)
++|+.+|... .++. +.....+.......|..+...+ ....++|+++.+-+...+.+.+.|...+
T Consensus 163 ~~R~~~R~~~-~dr~-e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 163 RERIIKNSRD-QNRL-DQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHHC------CC-CHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-ccch-hhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999988532 1221 1111223333333343332222 2234677776554555566666666544
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.33 E-value=1.3e-13 Score=118.84 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEe------------------CCCCCCCCCHHHHHhhcccCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVN------------------QDSFYHNLTEQELARVHEYNFDH 104 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~------------------~D~~~~~~~~~~~~~~~~~~f~~ 104 (303)
++. +.+++|.|+||||||||++.|++.+ |. |-+.+. ++... ..+..+...+....+
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~~~~-- 101 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYEELK-- 101 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHHHHT--
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhhhhc--
Confidence 388 9999999999999999999999988 53 333332 22222 233333322211001
Q ss_pred CCcccHHHHHHHHHHhhCC-Ccc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 105 PDAFDTEKLLSSMEKLRHG-QAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 105 p~~~d~~~l~~~l~~l~~~-~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
..+.+.+.+.++.+... ... ....+|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 102 --~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 162 (263)
T 2pjz_A 102 --GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162 (263)
T ss_dssp --CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHH
T ss_pred --chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHH
Confidence 12345566777777654 322 33467888888887778888999999999999999654
No 78
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.32 E-value=3.7e-13 Score=129.27 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=100.1
Q ss_pred cc-ccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------
Q 022073 19 SG-FHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------- 75 (303)
Q Consensus 19 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------------------- 75 (303)
+. ++++|++++|++. ..+.+.+++.++++|.+++|.|+||||||||++.|.+.+.|.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 45 8899999999754 346889999999999999999999999999999999988753
Q ss_pred CEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhC---------CCcccc----CcccCCCCccCCCC
Q 022073 76 RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFP 142 (303)
Q Consensus 76 ~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~---------~~~v~~----p~~~~~~~~~~~~~ 142 (303)
.+.+++++.+....+..+...++.... ...+.+.+.+.++.... +-...+ ..+|.++.+|+..+
T Consensus 419 ~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 419 KIGTVSQEPILFSCSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp SEEEECSSCCCCSSBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred ceEEEccCCcccCCCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 244555555443345555444332110 11344555555544321 111111 35788888888777
Q ss_pred ceecCCCcEEEEeccccccchh
Q 022073 143 ARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 143 ~~~~~~~~vvildg~~~~~d~~ 164 (303)
++.+.+++++++|||++.+|+.
T Consensus 496 ral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHH
T ss_pred HHHHcCCCEEEEECcccCCCHH
Confidence 8888999999999999999654
No 79
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.32 E-value=1.8e-12 Score=107.23 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
...+++|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i~~d~~~ 55 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL---GIPQISTGELF 55 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCcEEehhHHH
Confidence 5567899999999999999999999988 56678877654
No 80
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.31 E-value=1.9e-11 Score=101.13 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
..+|.+++|+|||||||||+++.|++.++ . +.+......+...... .....+.|.++ ..+...... +.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~---~~ 71 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA--E-IKISISHTTRPKRPGD-QEGVDYFFIDE-----TRFQAMVKE---GA 71 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS--S-EEECCCEECSCCCTTC-CBTTTBEECCH-----HHHHHHHHH---TC
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC--C-eEEeceeccCCCchhH-hcCceEEeccH-----HHHHHHHhc---Cc
Confidence 55788999999999999999999999874 2 3333322221110000 01112223221 222211110 10
Q ss_pred ccccCccc---CCCCccCCCCceecCCCcEEEEeccccccchhhhhhcC--eEEEEec-ChHHHHHHHHhhCccccCCCH
Q 022073 125 AVDIPNYD---FKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMN--MKIFVDT-DADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 125 ~v~~p~~~---~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d--~~I~v~~-~~~~~~~R~~~R~~~~~~~~~ 198 (303)
......+. ++.... .....+.....+++|+...+. ..+...++ ..||+.+ +.+++.+|+..|+.... ...
T Consensus 72 ~~~~~~~~~~~~~~~~~--~i~~~l~~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~-~~i 147 (205)
T 3tr0_A 72 FLEHATIYERHYGTEKD--WVLRQLKAGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRRQDDT-AII 147 (205)
T ss_dssp EEEEEEETTEEEEEEHH--HHHHHHHTTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCS-STH
T ss_pred EEeeeeeecccccchHH--HHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCH-HHH
Confidence 00000000 000000 001123345678888654443 23333333 5677776 58888889888864332 333
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
...+....... ...+.+|+||.|+ +.+.+.+.+.+.|.
T Consensus 148 ~~rl~~~~~~~---------~~~~~~d~vi~n~-~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 148 EQRLALAREEM---------AHYKEFDYLVVND-NFDQAVQNLIHIIS 185 (205)
T ss_dssp HHHHHHHHHHH---------TTGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------hcccCCCEEEECC-CHHHHHHHHHHHHH
Confidence 33333322211 1136789999877 54455555555554
No 81
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.31 E-value=3e-13 Score=115.97 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHH--hCC-CCEEEEeCCCCCCCCCHHHHHhh-cccCCCCCCccc----
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ--LHD-QRVVLVNQDSFYHNLTEQELARV-HEYNFDHPDAFD---- 109 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~--l~~-~~~~~l~~D~~~~~~~~~~~~~~-~~~~f~~p~~~d---- 109 (303)
+..++.++.+|.+++|.|+||||||||++.|++. +.+ .|-+.++..+.. .......... ..+.++.|..+.
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL-ELSPDERARKGLFLAFQYPVEVPGVTI 97 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT-TSCHHHHHHTTBCCCCCCCC-CCSCBH
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC-CCCHHHHHhCcEEEeccCCccccCCCH
Confidence 3334444999999999999999999999999997 433 244445443221 1122221111 122333322111
Q ss_pred ---------------------HHHHHHHHHHhhCC-Ccc--ccCc-ccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 110 ---------------------TEKLLSSMEKLRHG-QAV--DIPN-YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 110 ---------------------~~~l~~~l~~l~~~-~~v--~~p~-~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+.+.++.+... ... .... +|.++.+|+..+.+.+.+++++++|||++++|+.
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~ 177 (250)
T 2d2e_A 98 ANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177 (250)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHH
T ss_pred HHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 12233444444442 212 2234 8888888888778888999999999999999664
No 82
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.31 E-value=3.3e-13 Score=129.65 Aligned_cols=139 Identities=13% Similarity=0.196 Sum_probs=96.0
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------CE
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RV 77 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~~ 77 (303)
+.++++|++++|++. .+.+.+++..+++|.+++|.|+||||||||++.|.+.+.+. .+
T Consensus 353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 458899999999643 46888999999999999999999999999999999998763 24
Q ss_pred EEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHH---------HhhCCCcc----ccCcccCCCCccCCCCce
Q 022073 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (303)
Q Consensus 78 ~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~---------~l~~~~~v----~~p~~~~~~~~~~~~~~~ 144 (303)
.+++++.+....+..+...++. +. .+.+.+.+.++ .+..+-.. .-..+|.++.+|+..+++
T Consensus 432 ~~v~Q~~~lf~~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 432 GIVLQDTILFSTTVKENLKYGN-----PG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp EEECTTCCCCSSBHHHHHHSSS-----TT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCccccccHHHHHhcCC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 5555665554445555444332 11 11122222222 11111111 012578888888888888
Q ss_pred ecCCCcEEEEeccccccchh
Q 022073 145 RVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 145 ~~~~~~vvildg~~~~~d~~ 164 (303)
.+.+++++++|||++.+|+.
T Consensus 506 l~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTK 525 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHH
T ss_pred HhcCCCEEEEECCccCCCHH
Confidence 88999999999999999664
No 83
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.30 E-value=1.1e-12 Score=105.29 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+.+|+|+|++||||||+++.|++.+ ++.+++.|.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~id~D~~~ 42 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEVLDTDMII 42 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCEEEChHHH
Confidence 45699999999999999999999998 67888887654
No 84
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.30 E-value=7.7e-13 Score=107.86 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..|.|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~~~i~~d~~~ 40 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KRILYDSDKEI 40 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEChHHH
Confidence 5689999999999999999999998 67888888764
No 85
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.30 E-value=4.4e-12 Score=103.90 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
+|+|+|++||||||+++.|++.++..++.+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 79999999999999999999988544566666664
No 86
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.29 E-value=5e-12 Score=101.53 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KYPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CCCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCeeecCcccc
Confidence 489999999999999999999998 67788888765
No 87
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.28 E-value=2.2e-12 Score=105.67 Aligned_cols=171 Identities=19% Similarity=0.258 Sum_probs=88.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHH-HHHHHhhCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL-SSMEKLRHGQ 124 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~-~~l~~l~~~~ 124 (303)
+++.+|.|+|++||||||+++.|++.+ +..+++.|.+.. ... ....+. +..+. ..+. .....+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~D~~~~-----~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~-- 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL---RLPLLSKDAFKE-----VMF--DGLGWS-DREWS-RRVGATAIMMLYH-- 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH---TCCEEEHHHHHH-----HHH--HHHCCC-SHHHH-HHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CCeEecHHHHHH-----HHH--HhcCcc-chHHH-HHhhHHHHHHHHH--
Confidence 467899999999999999999999988 566777765421 111 111111 10000 0010 00011000
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc--hh---hhh---hcCeEEEEecChHHHHHHHHhhCcc-ccC
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SR---VRE---LMNMKIFVDTDADVRLARRIRRDTV-EKG 195 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d--~~---~~~---~~d~~I~v~~~~~~~~~R~~~R~~~-~~~ 195 (303)
.....+.....+|+|+...... .. +.. ..+++||+++|.+++++|+..|... .+.
T Consensus 69 ----------------~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~ 132 (193)
T 2rhm_A 69 ----------------TAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARH 132 (193)
T ss_dssp ----------------HHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC-
T ss_pred ----------------HHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccC
Confidence 0000112234568887662110 01 121 2358999999999999999888531 111
Q ss_pred --CCHHHHHH--HHhhccccchhhccccc-cccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 196 --RDIATVLD--QYSKFVKPAFDDFILPT-KKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 196 --~~~~~~~~--~~~~~~~p~~~~~i~~~-~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
........ ++... +.. +.|. ...++++|+++...+..++.+++.|...+..
T Consensus 133 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 133 PGHCDDRSPADLELVRS----RGD-IPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp -------CHHHHHHHHH----SCC-CCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred cccccCccCcchhhHHH----Hhc-CCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence 10011111 12111 112 1222 2368899988765555677888888766643
No 88
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.28 E-value=5.2e-13 Score=114.20 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=79.1
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE--------------------eCCC-CCCCCCHHHHHhh
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV--------------------NQDS-FYHNLTEQELARV 97 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l--------------------~~D~-~~~~~~~~~~~~~ 97 (303)
..++.++.+|.+++|.|+||||||||++.|++.+.+.|-+.+ .++. ++..++..+...+
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL 96 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHH
Confidence 333334999999999999999999999999998865433333 3322 1222333333332
Q ss_pred cccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCc-------EEEEeccccccchhh
Q 022073 98 HEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD-------VILLEGILVFHDSRV 165 (303)
Q Consensus 98 ~~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~-------vvildg~~~~~d~~~ 165 (303)
... +. ...+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++ ++++|||++++|+..
T Consensus 97 ~~~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~ 168 (249)
T 2qi9_C 97 HQH----DK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 168 (249)
T ss_dssp TCS----ST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHH
T ss_pred hhc----cC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHH
Confidence 211 00 1244556666666543322 234678888888877777778888 999999999997653
No 89
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.28 E-value=7.4e-13 Score=107.91 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHH-HHHHHHhhCCCccc
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL-LSSMEKLRHGQAVD 127 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l-~~~l~~l~~~~~v~ 127 (303)
.+|+|+|++||||||+++.|++.+ ++.+++.|.+.+......... .|...+...+... ...+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~D~~~~~~~g~~~~~----~~~~~g~~~~~~~~~~~~~~~~------ 69 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---GVGLLDTDVAIEQRTGRSIAD----IFATDGEQEFRRIEEDVVRAAL------ 69 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHHHSSCHHH----HHHHHCHHHHHHHHHHHHHHHH------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEeCchHHHHHcCCCHHH----HHHHhChHHHHHHHHHHHHHHH------
Confidence 469999999999999999999998 678889887642110000000 0000000000000 01111110
Q ss_pred cCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhh--cCeEEEEecChHHHHHHHHhhCccc--cCCCHHHHHH
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVLD 203 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~--~d~~I~v~~~~~~~~~R~~~R~~~~--~~~~~~~~~~ 203 (303)
.....++.+|....+++..++. .+.+|||++|.+++.+|+..|.... ..........
T Consensus 70 -------------------~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~ 130 (184)
T 2iyv_A 70 -------------------ADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYR 130 (184)
T ss_dssp -------------------HHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHH
T ss_pred -------------------hcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHH
Confidence 1112334444333334333322 6799999999999999998775311 1122333333
Q ss_pred -HHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 204 -QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 204 -~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
++..+ .|.| ...+|++|+++.. .++.+.+.|...+..
T Consensus 131 ~~~~~r-~~~~-------~~~~~~~Idt~~~---s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 131 ALMAKR-APLY-------RRVATMRVDTNRR---NPGAVVRHILSRLQV 168 (184)
T ss_dssp HHHHHH-HHHH-------HHHCSEEEECSSS---CHHHHHHHHHTTSCC
T ss_pred HHHHHH-HHHH-------hccCCEEEECCCC---CHHHHHHHHHHHHhh
Confidence 33322 2222 3568999987732 245566666655543
No 90
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.27 E-value=4e-13 Score=116.19 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=84.1
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CC-CCEEEE-----------------
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLV----------------- 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~-~~~~~l----------------- 80 (303)
++++|++++|.+ .+.+..++..+.+|.+++|.|+||||||||++.|++.+ .+ .|-+.+
T Consensus 21 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 21 LSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred EEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 455566665532 23455556669999999999999999999999999974 22 233333
Q ss_pred ----eCCC-CCCCCCHHHHHhhcc--c--CCCCCCccc----HHHHHHHHHHhhCCC-cc-ccC--cccCCCCccCCCCc
Q 022073 81 ----NQDS-FYHNLTEQELARVHE--Y--NFDHPDAFD----TEKLLSSMEKLRHGQ-AV-DIP--NYDFKSYKNNVFPA 143 (303)
Q Consensus 81 ----~~D~-~~~~~~~~~~~~~~~--~--~f~~p~~~d----~~~l~~~l~~l~~~~-~v-~~p--~~~~~~~~~~~~~~ 143 (303)
.++. ++..++..+...... . .+..+ .+. .+.+.+.++.+.... .. ..+ .+|.++.+|+..+.
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE-TLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCC-CCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccc-cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 3322 122222222211100 0 00000 011 123445566555432 12 223 38888999988888
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+.+++++++|||++++|+.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~ 198 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDID 198 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHH
T ss_pred HHHhCCCEEEEeCCCCCCCHH
Confidence 888999999999999999654
No 91
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.25 E-value=5.4e-13 Score=118.27 Aligned_cols=145 Identities=18% Similarity=0.260 Sum_probs=86.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC--CCCCCHH-------HHHhhcccCCCCCCcccHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLTEQ-------ELARVHEYNFDHPDAFDTEKLLSSME 118 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~--~~~~~~~-------~~~~~~~~~f~~p~~~d~~~l~~~l~ 118 (303)
+.+|+|+|++|||||||++.|++.+ +..++++|++ |+.+... +.........+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l---~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d--------------- 68 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF---NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID--------------- 68 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT---TEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS---------------
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc---CCceeccccccccccccccccCCCHHHHHHHHHHHHH---------------
Confidence 3699999999999999999999998 5899999998 7655321 11111000000
Q ss_pred HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhcCeEEEEe-cChH--HHHHHHHhhCccccC
Q 022073 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVD-TDAD--VRLARRIRRDTVEKG 195 (303)
Q Consensus 119 ~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~d~~I~v~-~~~~--~~~~R~~~R~~~~~~ 195 (303)
+..+.. .++.+++....+.........+..+|+++|...+ ...+...++ +|++ ++++ ++++|++.| ...+|
T Consensus 69 -i~~~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly-~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G 142 (340)
T 3d3q_A 69 -ILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLY-IQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLN 142 (340)
T ss_dssp -CBCTTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH-HHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSC
T ss_pred -HhCCcc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhh-HHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcC
Confidence 000111 2222222222221111111245567777777754 456666555 7788 8888 677888887 66666
Q ss_pred CCHHHHHHHHhhccccchhhcccc
Q 022073 196 RDIATVLDQYSKFVKPAFDDFILP 219 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~p~~~~~i~~ 219 (303)
. ..+.++.....|.+..++.|
T Consensus 143 ~---~~l~~~L~~vdP~~a~~I~p 163 (340)
T 3d3q_A 143 N---NKLHEYLASFDKESAKDIHP 163 (340)
T ss_dssp H---HHHHHHHHHHCHHHHHHSCT
T ss_pred H---HHHHHHHHhhCcHHHhhcCc
Confidence 4 36777777788888777655
No 92
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.24 E-value=2.1e-12 Score=103.55 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEECcHHH
Confidence 69999999999999999999988 56788887654
No 93
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.24 E-value=1.7e-13 Score=116.05 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=27.2
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.....++|.+|+|.|++||||||+++.|++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3344678999999999999999999999987
No 94
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.22 E-value=1.7e-11 Score=100.68 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
+|+|+|++||||||+++.|++.+...+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 799999999999999999999985444444444
No 95
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.22 E-value=2.1e-11 Score=101.11 Aligned_cols=182 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
..++.+|+|+|++||||||+++.|++.++. .+.. +.....+.....+. .-..+.| .+.+.+...+ ..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~-~~~~-~~~~ttR~~~~~e~-~g~~~~~-----~~~~~~~~~~---~~~~ 77 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS-RFRF-SISCTTRNKREKET-NGVDYYF-----VDKDDFERKL---KEGQ 77 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT-TEEE-CCEEECSCCCTTCC-BTTTEEE-----CCHHHHHHHH---HTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc-ceee-eeeecCCCCCCCCC-CCcceee-----CCHHHHHHHH---HcCC
Confidence 456789999999999999999999998842 1221 11100100000000 0001111 2333333322 2232
Q ss_pred ccccCcccCCCCccCC-CCceecCCCcEEEEeccccccchhhhhhc---C-eEEEEe-cChHHHHHHHHhhCccccCCCH
Q 022073 125 AVDIPNYDFKSYKNNV-FPARRVNPSDVILLEGILVFHDSRVRELM---N-MKIFVD-TDADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~-~~~~~~~~~~vvildg~~~~~d~~~~~~~---d-~~I~v~-~~~~~~~~R~~~R~~~~~~~~~ 198 (303)
.+....+......... .....+.....+|+|....+. ..+.+.+ + ++|||+ ++.+++.+|+..|.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~----~~~ 152 (204)
T 2qor_A 78 FLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT----EKP 152 (204)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT----SCH
T ss_pred CEEeHHhCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC----CCH
Confidence 2222222111111000 001123456788888655443 2344433 3 789999 899999999877742 122
Q ss_pred HHHHHHHhhccccchhhcccc-ccccccEEecCCCCCHHHHHHHHHHHHHH
Q 022073 199 ATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~-~~~~aD~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
+.+...+.....+. .+ +...+|++|+|+ +.+.+++.+.+.|...
T Consensus 153 ~~i~~rl~~~~~~~-----~~~~~~~~d~vi~n~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 153 EEINKRMQELTREM-----DEADKVGFNYFIVND-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHTCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHhhhccCcEEEECc-CHHHHHHHHHHHHHHH
Confidence 33332222211111 01 246789988876 5556666666666543
No 96
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.21 E-value=1.2e-12 Score=135.51 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=100.7
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~ 76 (303)
+.++++|++|+|++. ..+.+.+++..+++|.+++|+|+||||||||++.|.+.+.+. .
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 458899999999864 457899999999999999999999999999999999988763 2
Q ss_pred EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHH---------HHhhCCCccc----cCcccCCCCccCCCCc
Q 022073 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSM---------EKLRHGQAVD----IPNYDFKSYKNNVFPA 143 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l---------~~l~~~~~v~----~p~~~~~~~~~~~~~~ 143 (303)
+.+++++.+....+..+...++... .+.+.+.+.+ ..+..+-... -..+|.++.+|+..++
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGRED------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSS------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred eEEEcCCCccCCccHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHH
Confidence 4566677666555666655544321 2233333332 2332221111 1257788888887778
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+...+++++|+|+|++.+|+.
T Consensus 540 al~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 540 ALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp HHHHCCSEEEEESTTCSSCHH
T ss_pred HHhcCCCEEEEECCCCCCCHH
Confidence 888999999999999999654
No 97
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.21 E-value=1.4e-12 Score=135.05 Aligned_cols=142 Identities=11% Similarity=0.150 Sum_probs=98.0
Q ss_pred ccccccCcccccCCC-CCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------------------C
Q 022073 19 SGFHMDGLEVRNKET-GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------R 76 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------------------~ 76 (303)
+.++++|++++|++. ..+.+.+++..+++|.++||+|+||||||||++.|.+.+.+. .
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 458899999999754 346889999999999999999999999999999999988652 3
Q ss_pred EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhC---------CCccc----cCcccCCCCccCCCCc
Q 022073 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVD----IPNYDFKSYKNNVFPA 143 (303)
Q Consensus 77 ~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~---------~~~v~----~p~~~~~~~~~~~~~~ 143 (303)
+.++++|.+....+..+...++... ...+.+.+.+.++.... +-... -..+|.++.+|+..++
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 4556666555444544443332211 11333444443333211 11111 1247778888887778
Q ss_pred eecCCCcEEEEeccccccchh
Q 022073 144 RRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 144 ~~~~~~~vvildg~~~~~d~~ 164 (303)
+.+.+++++|+|||++.+|+.
T Consensus 1185 al~~~p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1185 ALVRQPHILLLDEATSALDTE 1205 (1284)
T ss_dssp HHHHCCSSEEEESCSSSCCHH
T ss_pred HHHcCCCEEEEeCCcccCCHH
Confidence 888999999999999998543
No 98
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.21 E-value=1.7e-12 Score=107.24 Aligned_cols=74 Identities=14% Similarity=0.348 Sum_probs=42.2
Q ss_pred hhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHH-HHHhhccccchhhcccccc-ccccEEecCCCCCHHHHHHHHHH
Q 022073 167 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVL-DQYSKFVKPAFDDFILPTK-KYADIIIPRGGDNHVAIDLIVQH 244 (303)
Q Consensus 167 ~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~-~~~~~~~~p~~~~~i~~~~-~~aD~iI~~~~~~~~~~~~~v~~ 244 (303)
..+|++|||++|.+++++|+..|. +..+... .++.......|..+..++. ..+|++|+++.+-+...+.+.+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~-----r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~ 197 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG-----RSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNK 197 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT-----CHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC-----ChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHH
Confidence 457899999999999999998774 2221100 1222223333333333444 67899998775323333444444
Q ss_pred H
Q 022073 245 I 245 (303)
Q Consensus 245 i 245 (303)
+
T Consensus 198 l 198 (205)
T 2jaq_A 198 L 198 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.20 E-value=3e-12 Score=103.06 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+.+|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l---~~~~id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT---TCEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CCCEEeccHHH
Confidence 4689999999999999999999998 56778877543
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.20 E-value=4e-12 Score=111.04 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=82.8
Q ss_pred cccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCCCCCCH
Q 022073 20 GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTE 91 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~~~~~~ 91 (303)
.++++|+++.+ .+.+..++..+.+|.+++|.|+||||||||++.|++.+.+. .+.++.++......+.
T Consensus 40 ~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 40 SLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTI 115 (290)
T ss_dssp ----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBH
T ss_pred eEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccH
Confidence 46778888732 35677888889999999999999999999999999988642 3556777654433466
Q ss_pred HHHHhhcccCCCCCCcccHHHHHHHHHHhh---------CCCc--c--ccCcccCCCCccCCCCceecCCCcEEEEeccc
Q 022073 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGIL 158 (303)
Q Consensus 92 ~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~---------~~~~--v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~ 158 (303)
.+... + ..+ ......+.+.... .+.. + ....+|.++.+|+..+.+.+.+++++++|+|+
T Consensus 116 ~enl~-~-~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 116 KENII-G-VSY------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHH-T-TCC------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHhh-C-ccc------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 55543 2 111 1111122222111 1000 0 12367888888888778888999999999999
Q ss_pred cccchhh
Q 022073 159 VFHDSRV 165 (303)
Q Consensus 159 ~~~d~~~ 165 (303)
+++|+..
T Consensus 188 s~LD~~~ 194 (290)
T 2bbs_A 188 GYLDVLT 194 (290)
T ss_dssp TTCCHHH
T ss_pred ccCCHHH
Confidence 9998753
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.19 E-value=4.8e-12 Score=104.79 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
+.+|.+|+|+|++||||||+++.|++.+.+ ... +......+...... .....+.|.+ .+.+... ...+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~-~~i~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~---~~~~~ 71 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYK-YSISMTTRQMREGE-VDGVDYFFKT-----RDAFEAL---IKDDQ 71 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEE-CCCCEECSCCCTTC-CBTTTBEECC-----HHHHHHH---HHTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeE-EecccccCCCCCCc-cCCCceEEcC-----HHHHHHH---HHcCC
Confidence 567889999999999999999999998743 221 11111111000000 0001222221 1222221 12233
Q ss_pred ccccCcccCCCCccC-CCCceecCCCcEEEEeccccccchhhhhhc-Ce-EEEEe-cChHHHHHHHHhhC
Q 022073 125 AVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRELM-NM-KIFVD-TDADVRLARRIRRD 190 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~-~~~~~~~~~~~vvildg~~~~~d~~~~~~~-d~-~I~v~-~~~~~~~~R~~~R~ 190 (303)
.+..+.+........ ......+.....+|+|+++.+. ..+.+.+ |. .+|+. ++.+++.+|+..|+
T Consensus 72 ~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~ 140 (207)
T 2j41_A 72 FIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140 (207)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC------------
T ss_pred eEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcC
Confidence 333332221100000 0001112345789999987763 4555555 74 45554 45778888988875
No 102
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.19 E-value=4.6e-11 Score=101.88 Aligned_cols=39 Identities=13% Similarity=0.023 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+++++|+|+|++||||||+++.|++.+ ++.+++.|+..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~---g~~~is~~~~~ 64 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH---CYCHLSTGDLL 64 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh---CCeEEecHHHH
Confidence 4578999999999999999999999988 68888887654
No 103
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.19 E-value=5.1e-12 Score=101.65 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GYEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCcEEcccHHH
Confidence 579999999999999999999998 67888888654
No 104
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.18 E-value=1.6e-10 Score=95.90 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
++.+|+|+|++||||||+++.|++.++..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 467999999999999999999999987543
No 105
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.18 E-value=2.7e-11 Score=98.67 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|.+|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l---~~~~i~~d~~~ 39 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL---GFKKLSTGDIL 39 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH---TCEEECHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCeEecHHHHH
Confidence 57899999999999999999999988 67888877554
No 106
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.18 E-value=1.6e-11 Score=102.58 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~ 35 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEeeHHHHH
Confidence 68999999999999999999988 67788887655
No 107
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.16 E-value=1.3e-11 Score=102.58 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..++.+|+|+|++||||||+++.|++.++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999998753
No 108
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.16 E-value=2e-11 Score=99.71 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.+++|+|||||||||++++|.+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35799999999999999999999885
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.15 E-value=1.3e-11 Score=99.76 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+|+|+|++||||||+++.|++.+ ++.+++.|.++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l---~~~~~d~d~~~ 39 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL---DLVFLDSDFLI 39 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCCEEcccHHH
Confidence 369999999999999999999998 67888888764
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.15 E-value=7.3e-11 Score=95.32 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+.+|.|+|++||||||+++.|++.++. ..+.++.|.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHh
Confidence 468999999999999999999999852 35556677553
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.15 E-value=2.4e-11 Score=102.63 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=20.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHH-HHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMII-QQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~-~~l~ 73 (303)
+.+|.+++|+|||||||||+++.|+ +.++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 8899999999999999999999999 8874
No 112
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.14 E-value=2.1e-12 Score=123.77 Aligned_cols=136 Identities=16% Similarity=0.070 Sum_probs=90.3
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCC-CCCCH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFY-HNLTE 91 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~-~~~~~ 91 (303)
+++++++++|.+ ......+..+.+|.+++|.|+||||||||++.|++.+.+. .+.+++++... ...+.
T Consensus 358 l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv 434 (607)
T 3bk7_A 358 VEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 434 (607)
T ss_dssp EEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBH
T ss_pred EEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcH
Confidence 445667665532 1233334447889999999999999999999999988652 35677776432 34455
Q ss_pred HHHHhhc-ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 92 QELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 92 ~~~~~~~-~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+..... ...+ -+.+...+.+..+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|..
T Consensus 435 ~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 435 YELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp HHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred HHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 4433221 0001 1223445566666554322 33468888888888888888999999999999999764
No 113
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.14 E-value=2.6e-11 Score=101.31 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.|+|+|++||||||+++.|++.+ +..+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~ 35 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHISTGDMF 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHH
Confidence 58999999999999999999988 67888887655
No 114
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.13 E-value=1.5e-12 Score=123.05 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=76.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC---------CEEEEeCCCCC-CCCCHHHHHhhcccCCCCCCcccHHHH
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKL 113 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~---------~~~~l~~D~~~-~~~~~~~~~~~~~~~f~~p~~~d~~~l 113 (303)
.+.++.++||+|+||||||||++.|++.+.+. .+.+++++.+. ...+..+........+... .....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~ 366 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALST---SSWFF 366 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCT---TSHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccch---hHHHH
Confidence 37889999999999999999999999988653 34455555432 2334444333221111101 11223
Q ss_pred HHHHHHhhCCCc--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 114 LSSMEKLRHGQA--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 114 ~~~l~~l~~~~~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+.++.+..... -....+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 333443332222 233467888889988888888999999999999999764
No 115
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.13 E-value=1.1e-10 Score=96.56 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~ 81 (303)
..+|+|.|+.||||||+++.|++.| ++.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCEEC
Confidence 4599999999999999999999999 677777
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.12 E-value=2.8e-10 Score=93.91 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEE--EEeCCCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVV--LVNQDSFYH 87 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~--~l~~D~~~~ 87 (303)
...++.+|+|+|++||||||+++.|++.+...+.. +++.|++..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 37789999999999999999999999998533433 777776543
No 117
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.12 E-value=2.2e-10 Score=93.49 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~ 84 (303)
++|.|+|++||||||+++.|++.++..+ +.+++.|+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 6899999999999999999999985332 66666544
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.11 E-value=9.9e-11 Score=94.86 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..++.+|.|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~---~~~~~~~d~~~ 46 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS---GLKYINVGDLA 46 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh---CCeEEEHHHHH
Confidence 3456789999999999999999999998 67788877643
No 119
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.10 E-value=7.5e-10 Score=90.16 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~~ 85 (303)
..++.+|+|+|++||||||+++.|++.+...+ +.+++.|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 55789999999999999999999999886433 566766543
No 120
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.10 E-value=9.9e-11 Score=97.39 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
+++.+|+|+|++||||||+++.|++.++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999875333
No 121
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.10 E-value=8.3e-10 Score=94.98 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=85.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE--EeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL--VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~--l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
++.+|.|+|++||||||+++.|++.|...+..+ ++.|.+...+. . |.. .....+........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--------~--~~~---~~e~~~~~~~~~~i--- 66 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--------V--WKE---KYEEFIKKSTYRLI--- 66 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--------S--CCG---GGHHHHHHHHHHHH---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--------h--hhH---HHHHHHHHHHHHHH---
Confidence 478999999999999999999999854334433 46665432211 1 210 01111111111000
Q ss_pred ccccCcccCCCCccCCCCceecCCCcEEEEeccccccc--hhhhhh------cCeEEEEecChHHHHHHHHhhCccccCC
Q 022073 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVEKGR 196 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d--~~~~~~------~d~~I~v~~~~~~~~~R~~~R~~~~~~~ 196 (303)
...+.. ..+|+|+...... ..+... .+.+||+++|.+++++|..+|.. ..
T Consensus 67 ------------------~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~---~~ 124 (260)
T 3a4m_A 67 ------------------DSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE---KI 124 (260)
T ss_dssp ------------------HHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC---SS
T ss_pred ------------------HHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC---CC
Confidence 011123 5788887443211 112221 36899999999999999988751 12
Q ss_pred CHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHHHhcc
Q 022073 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQ 251 (303)
Q Consensus 197 ~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~~l~~ 251 (303)
..+.+...+.....|... | ....++++|+++.. ...+.+++.|.+.+..
T Consensus 125 ~~~~l~~~~~~~e~~~~~-~---~~~~~~~~Id~~~~--~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 125 PNEVIKKMYEKFDEPGKK-Y---KWDEPFLIIDTTKD--IDFNEIAKKLIEKSKE 173 (260)
T ss_dssp CHHHHHHHHHHCCCTTSS-C---GGGCCSEEEETTSC--CCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcCcccc-C---CCCCCEEEEeCCCC--CCHHHHHHHHHhcccC
Confidence 222222333332222100 0 01458899987642 1255666666655543
No 122
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.10 E-value=2.4e-12 Score=121.87 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=86.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCC-CCCCH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFY-HNLTE 91 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~-~~~~~ 91 (303)
+++++++++|.+ ......+..+.+|.+++|.|+||||||||++.|++.+.+. .+.+++++... ...+.
T Consensus 288 l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 288 VTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred EEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH
Confidence 445666665532 1223333446789999999999999999999999988652 35677776533 33444
Q ss_pred HHHHhhc-ccCCCCCCcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 92 QELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 92 ~~~~~~~-~~~f~~p~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.+..... ...+ -+.+...+.+..+...... ....+|.++.+|+..+.+.+.+++++|+|+|++++|..
T Consensus 365 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 365 YELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp HHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred HHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 4332211 0001 1123334444444332222 23467888888887778888999999999999999764
No 123
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.09 E-value=2e-10 Score=96.41 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
+..+|+|.|++||||||+++.|++.| ++.+++.|.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l---g~~~~d~~~ 47 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL---GIHFYDDDI 47 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH---TCEEECHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc---CCcEEcHHH
Confidence 45799999999999999999999999 678888654
No 124
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.09 E-value=7.9e-11 Score=98.84 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.++.+|.|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l---~~~~i~~d~~~ 40 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKY---QLAHISAGDLL 40 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHH---CCEECCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCceecHHHHH
Confidence 356789999999999999999999998 56777777654
No 125
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.2e-11 Score=115.43 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--------CEEEEeCCCCC-CCCCHHHHHhhcccCCCCCCcccHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLS 115 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--------~~~~l~~D~~~-~~~~~~~~~~~~~~~f~~p~~~d~~~l~~ 115 (303)
...+.+++|.|+||||||||++.|++.+.+. ++.++.++... ...+..+..... . .. ...+.....+
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~-~-~~--~~~~~~~~~~ 450 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKK-I-RG--QFLNPQFQTD 450 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHH-C-SS--TTTSHHHHHH
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHH-h-hc--ccccHHHHHH
Confidence 3344789999999999999999999988653 35666665322 223444432211 0 00 1123344455
Q ss_pred HHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 116 SMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 116 ~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
.++.+...... ....+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 451 ~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 66666554332 34467888889988888888999999999999999764
No 126
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=5e-11 Score=99.17 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=79.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~ 124 (303)
.++|.+|+|+|||||||||+++.|++.+++.-...++. ..+..... ......|. ..+.+.+.+.+. .+.
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~--~tr~~~~~---e~~g~~y~---~~~~~~f~~~~~---~~~ 73 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM--TTRLPREG---EQDGVDYY---FRSREVFEQAIK---DGK 73 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE--ESSCCCTT---CCBTTTBE---ECCHHHHHHHHH---TTC
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec--ccccCcCc---ccCCceeE---EecHHHHHHHHh---cCc
Confidence 35688999999999999999999999875311111110 00000000 00011110 123333333332 222
Q ss_pred ccccCcccC---CCCccCCCCceecCCCcEEEEeccccccchhhhh-hcC-eEEEEecC-hHHHHHHHHhhCccccCCCH
Q 022073 125 AVDIPNYDF---KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE-LMN-MKIFVDTD-ADVRLARRIRRDTVEKGRDI 198 (303)
Q Consensus 125 ~v~~p~~~~---~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~-~~d-~~I~v~~~-~~~~~~R~~~R~~~~~~~~~ 198 (303)
.+....+.. ++... .....+.....+|+|....+. ..+.+ ..+ ..||+.++ .+++.+|+.+|+. .....+
T Consensus 74 ~le~~~~~~~~yg~~~~--~i~~~l~~g~~vild~~~~g~-~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~-~~~e~i 149 (208)
T 3tau_A 74 MLEYAEYVGNYYGTPLE--YVEEKLAAGVDIFLEIEVQGA-MQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT-ESMEVV 149 (208)
T ss_dssp EEEEEEETTEEEEEEHH--HHHHHHHTTCCEEEECCHHHH-HHHHHHCTTSEEEEEECTTTTTSSCC--------CCHHH
T ss_pred EEEEEEEccccCCCcHH--HHHHHHHcCCeEEEEeeHHHH-HHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC-CCHHHH
Confidence 221111111 11100 001223445667887755443 23333 333 57888866 7777778777752 112222
Q ss_pred HHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 199 ~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
...+....... +....+|++|.|+ +.+.+++.+.+.|.
T Consensus 150 ~~Rl~~~~~e~---------~~~~~~d~vivN~-~~~~~~~~l~~~i~ 187 (208)
T 3tau_A 150 EERMETAKKEI---------EMMASYDYAVVND-VVANAVQKIKGIVE 187 (208)
T ss_dssp HHHHHHHHHHH---------HHGGGSSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------HhhccCCEEEECc-CHHHHHHHHHHHHH
Confidence 22222222111 1235789999877 44455555555554
No 127
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.05 E-value=1.2e-10 Score=94.91 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~~~ 86 (303)
+.+|.|+|++||||||+++.|++.++..+ ..+++.|+++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 46899999999999999999999885433 6777766543
No 128
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.05 E-value=8.3e-10 Score=92.13 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=36.5
Q ss_pred ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 40 AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 40 ~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.++...+++.+|.|.||+||||||.|+.|++.+ ++..++..+.+
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~---g~~hIstGdll 64 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF---HFNHLSSGDLL 64 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHH---CCEEECHHHHH
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHH---CCceEcHHHHH
Confidence 345557889999999999999999999999999 78888886655
No 129
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.05 E-value=1.8e-09 Score=87.28 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~ 84 (303)
.++.+|+|+|++||||||+++.|++.+.+.+ ++.++.|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4678999999999999999999999885444 34445443
No 130
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.04 E-value=3.7e-10 Score=94.54 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
++++.|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~~~ 39 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF---HAAHLATGDML 39 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CceEEehhHHH
Confidence 356789999999999999999999998 57888887765
No 131
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.01 E-value=2.6e-10 Score=95.97 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..++.+|+|+|++||||||+++.|++.+ +..+++.|+++
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~~~ 42 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF---ELKHLSSGDLL 42 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS---SSEEEEHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc---CCeEEechHHH
Confidence 3456799999999999999999999988 67888887665
No 132
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.01 E-value=1.6e-10 Score=96.77 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=28.0
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV 80 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l 80 (303)
-+++|+|| + +.+|.+++|+||||||||||+++|++.+ + |.+.+
T Consensus 11 ~~l~~isl-----~----------i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~ 53 (218)
T 1z6g_A 11 SSGLVPRG-----S----------MNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF 53 (218)
T ss_dssp --------------------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE
T ss_pred ccccCCce-----e----------cCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE
Confidence 45788888 7 9999999999999999999999999988 3 44444
No 133
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.00 E-value=4.5e-10 Score=94.99 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
...+..|.|.|++||||||+++.|++.+ ++.+++.|++.
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li 51 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF---CVCHLATGDML 51 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---CCceecHHHHH
Confidence 4456789999999999999999999998 67888887654
No 134
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.98 E-value=7.7e-10 Score=92.94 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=30.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+|+|.|++||||||+++.|++.+ +..+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SLAHIESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEchHHHH
Confidence 68999999999999999999998 57888887654
No 135
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.98 E-value=2.8e-10 Score=94.77 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC-CCC--EEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH-DQR--VVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~-~~~--~~~l~~D~~~ 86 (303)
..++.+|+|+|++||||||+++.|++.++ ..+ ..+++.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 66789999999999999999999999885 223 7777766544
No 136
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.96 E-value=2.8e-09 Score=88.87 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~ 77 (303)
.++.+|.|.|++||||||+++.|++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999976554
No 137
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.96 E-value=5.8e-09 Score=84.36 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
++++|+|+|++||||||+++.|++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999999884
No 138
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.94 E-value=7.8e-10 Score=92.46 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=32.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+++.|.|.|++||||||+++.|++.+ +..+++.|++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li 40 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY---GLAHLSTGDML 40 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CceEEehhHHH
Confidence 45689999999999999999999998 67888887655
No 139
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.93 E-value=2.4e-09 Score=89.24 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=43.8
Q ss_pred hcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHH
Q 022073 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (303)
Q Consensus 168 ~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~ 247 (303)
.+|++||+++|+++.++|+.+|....+-.. ....|.......|..+... ...-++|+.+.+-+...+.+.+.|..
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~---~~~~f~~rv~~~y~~la~~--~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDRIEQ---ESFDFFNRTRARYLELAAQ--DKSIHTIDATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCTTTT---SCHHHHHHHHHHHHHHHHT--CTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhh---hHHHHHHHHHHHHHHHHHH--CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999853221111 0111223333334433321 12346677665444555666666665
Q ss_pred Hh
Q 022073 248 KL 249 (303)
Q Consensus 248 ~l 249 (303)
.|
T Consensus 207 ~l 208 (213)
T 4tmk_A 207 WV 208 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 140
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.93 E-value=8.3e-09 Score=85.43 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=42.1
Q ss_pred hcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHHH
Q 022073 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (303)
Q Consensus 168 ~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~~ 247 (303)
.+|++||+++|+++.++|+.+|+... .+ .+.....|...+...|..+...... .=.+|+.+.+-+...+.+.+.|.+
T Consensus 124 ~PDl~i~Ld~~~e~~~~Ri~~r~~~~-dr-~e~~~~~f~~~v~~~Y~~l~~~~~~-~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 124 YPDLTIYLNVSAEVGRERIIKNSRDQ-NR-LDQEDLKFHEKVIEGYQEIIHNESQ-RFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHSCCT-TEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEeeeCCCHHHHHHHHHhcCCcc-cc-hhccCHHHHHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHHH
Confidence 46999999999999999998875322 11 1111122333344444444322111 124566554444455666777766
Q ss_pred Hhc
Q 022073 248 KLG 250 (303)
Q Consensus 248 ~l~ 250 (303)
.|.
T Consensus 201 ~L~ 203 (205)
T 4hlc_A 201 YLE 203 (205)
T ss_dssp HHC
T ss_pred HHh
Confidence 554
No 141
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.91 E-value=1.6e-09 Score=91.60 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
++.+|.|.|++||||||+++.|++.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 568999999999999999999999886443
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.90 E-value=2.9e-10 Score=113.26 Aligned_cols=132 Identities=13% Similarity=0.135 Sum_probs=88.3
Q ss_pred cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHH-HhCC------CCEEEEeCC--CCCCCCCHHHH
Q 022073 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ-QLHD------QRVVLVNQD--SFYHNLTEQEL 94 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~-~l~~------~~~~~l~~D--~~~~~~~~~~~ 94 (303)
.+++++|.+ .+.+..++..+.+|.+++|+|+||||||||++.|++ .+.. ....++.++ .++..++..+.
T Consensus 439 ~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~ 516 (986)
T 2iw3_A 439 CEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDF 516 (986)
T ss_dssp EEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHH
T ss_pred eeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHH
Confidence 455665532 235566666799999999999999999999999985 1110 123455443 23444555554
Q ss_pred HhhcccCCCCCCcccHHHHHHHHHHhhCCC-c--cccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 95 ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 95 ~~~~~~~f~~p~~~d~~~l~~~l~~l~~~~-~--v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... . .+ + . .+.+.+.+..+.... . .....+|.++.+|+..+.+.+.+++++++|+|++++|+.
T Consensus 517 l~~-~-~~---~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 517 VFE-S-GV---G-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp HHT-T-CS---S-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred HHH-h-hc---C-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 332 1 11 1 1 455667777766531 1 233468888888888878888999999999999999985
No 143
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.87 E-value=6.1e-10 Score=93.62 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..++.+|.|.|++||||||+++.|++.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456889999999999999999999998853
No 144
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.85 E-value=2.8e-08 Score=81.69 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
++.+|+|+|++||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999988
No 145
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.84 E-value=4.3e-09 Score=87.21 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=31.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
++|.|.||+||||+|.|+.|++.+ ++.+++..+.++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~---g~~~istGdllR 36 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK---GFVHISTGDILR 36 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCeEEcHHHHHH
Confidence 478899999999999999999999 789999877653
No 146
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.84 E-value=1.1e-09 Score=105.02 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=83.3
Q ss_pred cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC---CCCCCCHHHH----H
Q 022073 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS---FYHNLTEQEL----A 95 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~---~~~~~~~~~~----~ 95 (303)
+|++++|.+.. ..+...+ .+.+|.+++|.|+||||||||++.|++.+.+. |-.....+. .+........ .
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 78888885431 3455666 68999999999999999999999999988653 210000000 0111111110 0
Q ss_pred h--hc-ccCCCC----CCcc------------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 96 R--VH-EYNFDH----PDAF------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 96 ~--~~-~~~f~~----p~~~------------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
. .. .+.++. +..+ ..+.+.+.++.+...... ....+|.++.+|+..+.+.+.+++++++
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 00 000110 1000 012234555655544322 2345788888888888888899999999
Q ss_pred eccccccchh
Q 022073 155 EGILVFHDSR 164 (303)
Q Consensus 155 dg~~~~~d~~ 164 (303)
|||++++|+.
T Consensus 253 DEPTs~LD~~ 262 (607)
T 3bk7_A 253 DEPSSYLDIR 262 (607)
T ss_dssp ECTTTTCCHH
T ss_pred ECCcccCCHH
Confidence 9999999985
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.84 E-value=1.5e-09 Score=108.17 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=48.2
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
++++|++++|++...+.+..++..+..|.+++|.|+||||||||++.|++.+.+.
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 6689999999654446788899999999999999999999999999999988753
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.84 E-value=1e-08 Score=83.56 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.+.++.+|+|+|+|||||||+++.|++.+ ..+.+.++.|++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccch
Confidence 37788999999999999999999999974 345677887765
No 149
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.83 E-value=2.8e-09 Score=88.77 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=29.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.|+|+|++||||||+++.|++.+ +..+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~d~~~ 35 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQISTGDML 35 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHH
Confidence 58999999999999999999988 56778876654
No 150
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.83 E-value=1.3e-09 Score=103.07 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC---CCCCCCHHHH----H
Q 022073 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS---FYHNLTEQEL----A 95 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~---~~~~~~~~~~----~ 95 (303)
+|++++|.+.. +....++ .+.+|.+++|+|+||||||||++.|++.+.+. |......+. .+........ .
T Consensus 25 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~ 102 (538)
T 1yqt_A 25 EDCVHRYGVNA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102 (538)
T ss_dssp CCEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred cCcEEEECCcc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence 46777664321 2445555 68899999999999999999999999988653 110000000 0111111110 0
Q ss_pred -h-hc-ccCCCC----CC----cc--------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEE
Q 022073 96 -R-VH-EYNFDH----PD----AF--------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (303)
Q Consensus 96 -~-~~-~~~f~~----p~----~~--------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvil 154 (303)
. .. .+.++. |. .. ..+...+.+..+...... ....+|.++.+|+..+.+.+.+++++|+
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlL 182 (538)
T 1yqt_A 103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFF 182 (538)
T ss_dssp TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 00 001110 10 00 011234455555443322 2345788888888887888899999999
Q ss_pred eccccccchh
Q 022073 155 EGILVFHDSR 164 (303)
Q Consensus 155 dg~~~~~d~~ 164 (303)
|||++.+|+.
T Consensus 183 DEPTs~LD~~ 192 (538)
T 1yqt_A 183 DEPSSYLDIR 192 (538)
T ss_dssp ESTTTTCCHH
T ss_pred ECCcccCCHH
Confidence 9999999985
No 151
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.82 E-value=1.9e-09 Score=87.40 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
++.+++|+||||||||||++.|.+.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999999874
No 152
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.81 E-value=8.6e-09 Score=84.83 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCE
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~ 77 (303)
+.|.|.|+-||||||.++.|++.|...+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999865544
No 153
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.80 E-value=1e-08 Score=82.54 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH-HhCCCCEEEEeCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ-QLHDQRVVLVNQDSF 85 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~-~l~~~~~~~l~~D~~ 85 (303)
+.+|.|+|++||||||+++.|++ .+ +..+++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~---~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP---GFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST---TEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC---CcEEecHHHH
Confidence 57899999999999999999998 44 6888888654
No 154
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.79 E-value=2.2e-09 Score=89.96 Aligned_cols=116 Identities=12% Similarity=0.220 Sum_probs=65.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCC----CHHHHHhhcccCCCCCCcccHHHHHHHHHH-hh
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL----TEQELARVHEYNFDHPDAFDTEKLLSSMEK-LR 121 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~----~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~-l~ 121 (303)
..+..||.|++||||||+++.|++.+ ++.+++.+++++.. +... .....+ +........+.+.+.+.. +.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~---g~~~is~gdllR~~~~~~t~lG-~~i~~~-~~~G~lvpdei~~~ll~~~l~ 81 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF---GIPQISTGDMLRAAVKAGTPLG-VEAKTY-MDEGKLVPDSLIIGLVKERLK 81 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH---TCCEECHHHHHHHHHHTTCHHH-HHHHHH-HTTTCCCCHHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh---CCCeeechHHHHHhccCCChHH-HHHHHH-HhhccccccHHHHHHHHHHHh
Confidence 45689999999999999999999998 78888887655321 0000 000000 111111112222222221 11
Q ss_pred CCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccc-hh-hh---hhcCeEEEEecChHHHHHHHHhhC
Q 022073 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SR-VR---ELMNMKIFVDTDADVRLARRIRRD 190 (303)
Q Consensus 122 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d-~~-~~---~~~d~~I~v~~~~~~~~~R~~~R~ 190 (303)
. .....-+|+||.--..+ .. +. ..+|.+|++++|.+++++|+..|.
T Consensus 82 ~-----------------------~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 82 E-----------------------ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp S-----------------------GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred C-----------------------cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 1 00122468888422211 11 22 246899999999999999999985
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.79 E-value=2.1e-08 Score=85.79 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---GWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---CCeEEeccHHh
Confidence 589999999999999999999998 57788998853
No 156
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.79 E-value=4.6e-09 Score=85.46 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.|.|+||||||||||++.|.+.++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999998764
No 157
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=7.8e-10 Score=93.97 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=47.8
Q ss_pred hcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccc---------ccccccEEecCCCC---CH
Q 022073 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP---------TKKYADIIIPRGGD---NH 235 (303)
Q Consensus 168 ~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~---------~~~~aD~iI~~~~~---~~ 235 (303)
.+|++||+++|++++++|+.+|+.... .. ....|.......|..|+.+ +.....++|+.+.+ ..
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e-~~---~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEE-KG---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTT-TT---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCccc-cc---CCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCH
Confidence 579999999999999999988753221 11 0122334445556665543 22334567765543 33
Q ss_pred HHHHHHHHHHHHHh
Q 022073 236 VAIDLIVQHIRTKL 249 (303)
Q Consensus 236 ~~~~~~v~~i~~~l 249 (303)
..++.+++.|.+.+
T Consensus 225 ~~i~~i~~~i~~~l 238 (241)
T 2ocp_A 225 TKQEDLMREVNTFV 238 (241)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777654
No 158
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.77 E-value=6.2e-08 Score=79.30 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCC---Cccc---HHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHP---DAFD---TEKLLSSME 118 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p---~~~d---~~~l~~~l~ 118 (303)
-.++.+|+|+|.+||||+|+++.|.+.++..++.+++..+..+ ++.....+..++.- ..+. ...+..+-.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK----~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~ 83 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK----EQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGE 83 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH----HHHHHTTTCCCC-------CCSSHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH----HHHHHHcCCCchhhcchhhhHHHHHHHHHHHHH
Confidence 4577899999999999999999999977544566776644221 11111111111100 0000 011111111
Q ss_pred HhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchhhh-hhc-C--eEEEEecChHHHHHHHHhhCcccc
Q 022073 119 KLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR-ELM-N--MKIFVDTDADVRLARRIRRDTVEK 194 (303)
Q Consensus 119 ~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~-~~~-d--~~I~v~~~~~~~~~R~~~R~~~~~ 194 (303)
.+... +....-+... .....+++|++|.-...+-+.. +.+ . .+|.|.+++++|++|...+. .
T Consensus 84 ~~R~~--------d~~~~~~~~~---~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~---~ 149 (202)
T 3ch4_B 84 EKRQA--------DPGFFCRKIV---EGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---P 149 (202)
T ss_dssp HHHHH--------CTTTTHHHHS---BTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCC---T
T ss_pred HHHhc--------CchHHHHHHH---HhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcc---c
Confidence 11110 0000001000 0113458999998766554433 333 2 36899999999988842221 1
Q ss_pred CCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCH---HHHHHHHHHHHHHhc
Q 022073 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH---VAIDLIVQHIRTKLG 250 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~---~~~~~~v~~i~~~l~ 250 (303)
+.+-.. . +.-+.+. ..+|++|.|+++.+ ..++.++..++..|+
T Consensus 150 ~~Dd~e--s----------E~gL~~~-~~~D~vI~Ndgt~eel~~~v~~ll~~~~~~~~ 195 (202)
T 3ch4_B 150 GVDDAE--S----------ECGLDNF-GDFDWVIENHGVEQRLEEQLENLIEFIRSRLK 195 (202)
T ss_dssp TTTTSH--H----------HHTTTTC-CCCSEEEEECSCHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccc--c----------ccCCCCC-CcCCEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 122111 1 1112222 57999999886543 233444555544443
No 159
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.77 E-value=6.4e-10 Score=97.45 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=77.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEE--EeCCCCCCCCCHHHHHhhc
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVL--VNQDSFYHNLTEQELARVH 98 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~--l~~D~~~~~~~~~~~~~~~ 98 (303)
+++++++++|. .+.+..++..++++.+++|.|+||||||||++.|.+.+ .|-++ +.++.+...-+..+ .
T Consensus 102 i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~----~ 172 (305)
T 2v9p_A 102 FNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLAD----T 172 (305)
T ss_dssp HHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTT----C
T ss_pred EEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHH----H
Confidence 67889998885 35677788889999999999999999999999999998 35443 23333221111100 0
Q ss_pred ccCCCCCCcccHHHHHHHHHH-hhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 99 EYNFDHPDAFDTEKLLSSMEK-LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 99 ~~~f~~p~~~d~~~l~~~l~~-l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
...|. ++ .. +.+.+.+.. +..+- ....+|.++.+| +++.+.+++++| ++.+|+.
T Consensus 173 ni~~~-~~-~~-~~~~~~i~~~L~~gl--dg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 173 RAALV-DD-AT-HACWRYFDTYLRNAL--DGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp SCEEE-EE-EC-HHHHHHHHHTTTGGG--GTCCEECCCSSC---CCCEECCCCEEE----EESSCST
T ss_pred hhccC-cc-cc-HHHHHHHHHHhHccC--CccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHH
Confidence 11111 11 11 234455555 33221 234577787777 577788899888 6666654
No 160
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.75 E-value=2.7e-08 Score=87.07 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHH---HHHHHHHHhhCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTE---KLLSSMEKLRHGQ 124 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~---~l~~~l~~l~~~~ 124 (303)
+.+|.|+|++||||||+++.|++.+. ++.+++.|.+.. ..... .... ...++.+ ...+.+.....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~r~-----~~~~~-~~g~--~~~~~~~~~~~~~~~~~~~~~-- 69 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYRQ-----SIMAH-EERD--EYKYTKKKEGIVTGMQFDTAK-- 69 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHHHH-----HHTTS-CCCC-----CCHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccHHHH-----HhccC-Cccc--ccccchhhhhHHHHHHHHHHH--
Confidence 46899999999999999999998652 688898884321 11000 0000 0012211 11111111000
Q ss_pred ccccCcccCCCCccCCCCceec---CCCcEEEEeccccccc--hhhhhh------cCeEEEEecChHHHHHHHHhhCccc
Q 022073 125 AVDIPNYDFKSYKNNVFPARRV---NPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVE 193 (303)
Q Consensus 125 ~v~~p~~~~~~~~~~~~~~~~~---~~~~vvildg~~~~~d--~~~~~~------~d~~I~v~~~~~~~~~R~~~R~~~~ 193 (303)
..+ .....+|+|+...... ..+.+. ....||+++|.+++++|+..|..
T Consensus 70 -------------------~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-- 128 (301)
T 1ltq_A 70 -------------------SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT-- 128 (301)
T ss_dssp -------------------HHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--
T ss_pred -------------------HHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--
Confidence 001 2345788888654311 122211 13789999999999999998863
Q ss_pred cCCCHHHHHHHHhhc
Q 022073 194 KGRDIATVLDQYSKF 208 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (303)
+....+.+..++...
T Consensus 129 ~~~~~e~i~~~~~~~ 143 (301)
T 1ltq_A 129 KAVPIDVLRSMYKSM 143 (301)
T ss_dssp GCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 333445555555443
No 161
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.74 E-value=1.6e-08 Score=86.89 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~ 81 (303)
.+++.+|+|.|+.||||||+++.|++.+. +..++.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~--~~~~i~ 55 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE--DWEVVP 55 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT--TEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC--CCEEEe
Confidence 56789999999999999999999999884 355554
No 162
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.73 E-value=2.4e-09 Score=89.69 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=34.6
Q ss_pred hhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccccEEecCCCCCHHHHHHHHHHHH
Q 022073 167 ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 167 ~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD~iI~~~~~~~~~~~~~v~~i~ 246 (303)
..+|++||+++|+++.++|+ +|+..+. .. ..|.......|..+...+ ....++|+++.+-+.. +.+.+.|.
T Consensus 144 ~~PDl~I~Ldv~~e~~~~Ri-~rdr~E~-~~-----~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~ 214 (223)
T 3ld9_A 144 VYPDITFIIDVDINESLSRS-CKNGYEF-AD-----MEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHL 214 (223)
T ss_dssp SCCSEEEEEECC------------------C-----HHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHh-ccCcccc-ch-----HHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHH
Confidence 36899999999999999998 5553222 11 122222333333332221 2356788877655555 77777777
Q ss_pred HHhc
Q 022073 247 TKLG 250 (303)
Q Consensus 247 ~~l~ 250 (303)
+.++
T Consensus 215 ~~lg 218 (223)
T 3ld9_A 215 EVIK 218 (223)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6664
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.73 E-value=2.5e-09 Score=86.00 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHhhcccCCCCCCcc--c---HHHHHHHH-H
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAF--D---TEKLLSSM-E 118 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~--d---~~~l~~~l-~ 118 (303)
+.+|.+++|+|+||||||||++.+.. +...++.|.+ ..+.+++++.. . .+.+.... .
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~~~d~~------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVISSDFC------------RGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSC-----GGGEEEHHHH------------HHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEEccHHH------------HHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 88999999999999999999997432 2222222210 01112222111 1 11111111 1
Q ss_pred HhhCCCcccc---CcccCCCCccCCCCceecCCCcEEEEeccccccchhhhhhc
Q 022073 119 KLRHGQAVDI---PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM 169 (303)
Q Consensus 119 ~l~~~~~v~~---p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~~~~~~ 169 (303)
.+..+..... ...+.+..+++..+.+...+++++++|+|++.+|+......
T Consensus 69 ~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 69 RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 2223322111 11233344454555556678999999999999877655433
No 164
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.71 E-value=1.3e-08 Score=96.41 Aligned_cols=39 Identities=26% Similarity=0.541 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~ 84 (303)
+.+.+|.++|++||||||+++.|++.+... .+.+++.|.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 457899999999999999999999987532 357777664
No 165
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.71 E-value=2e-09 Score=101.79 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC--CC---CCCCCCHHHH-Hh-h---------cccCCCCC--
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ--DS---FYHNLTEQEL-AR-V---------HEYNFDHP-- 105 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~--D~---~~~~~~~~~~-~~-~---------~~~~f~~p-- 105 (303)
..+|.++||+|+||||||||++.|++.+.|. |-+.... +. .+........ .. . ..+....+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 7889999999999999999999999988653 1110000 00 0000000000 00 0 00000000
Q ss_pred --Ccc--------cHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecCCCcEEEEeccccccchh
Q 022073 106 --DAF--------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (303)
Q Consensus 106 --~~~--------d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~~ 164 (303)
... +.+...+.++.+...... ....+|.++.+++.++.+.+.+++++++|+|++.+|+.
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~ 172 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 000 001233444444433222 33457888888888878888999999999999999975
No 166
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.9e-09 Score=103.12 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=80.0
Q ss_pred cCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC------CCCCCCHHHHH-h
Q 022073 24 DGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS------FYHNLTEQELA-R 96 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~------~~~~~~~~~~~-~ 96 (303)
++++.+|.... ..+...+ ...+|.++||.|+||||||||++.|++.+.|..-.+..... ++......... .
T Consensus 81 ~~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 35666664332 1112222 37789999999999999999999999988653111000000 01111111100 0
Q ss_pred h--c--------ccCCC------CC-----------CcccHHHHHHHHHHhhCCCcc--ccCcccCCCCccCCCCceecC
Q 022073 97 V--H--------EYNFD------HP-----------DAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVN 147 (303)
Q Consensus 97 ~--~--------~~~f~------~p-----------~~~d~~~l~~~l~~l~~~~~v--~~p~~~~~~~~~~~~~~~~~~ 147 (303)
. . .+... .+ ...+.+.+.+.++.+...... ....+|.++.+++..+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 0 0 00000 00 011234556667766654433 334678888888877778889
Q ss_pred CCcEEEEeccccccchh
Q 022073 148 PSDVILLEGILVFHDSR 164 (303)
Q Consensus 148 ~~~vvildg~~~~~d~~ 164 (303)
+++++++|||++++|+.
T Consensus 239 ~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVK 255 (608)
T ss_dssp CCSEEEEECTTTTCCHH
T ss_pred CCCEEEEECcccCCCHH
Confidence 99999999999999975
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.65 E-value=6e-08 Score=78.90 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+.+++|+|+|||||||+++.|++.+. +.++++.|.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchh
Confidence 56899999999999999999998653 55778877654
No 168
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.64 E-value=1.9e-07 Score=89.13 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~ 84 (303)
++.+|.|+|.+||||||+++.|++.|... .++.++.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 68899999999999999999999998422 345555443
No 169
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.64 E-value=8.8e-08 Score=80.07 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
.++|.+++|+||||||||||++.|.+.+++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 567889999999999999999999998864
No 170
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.63 E-value=8.3e-08 Score=78.92 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
++.+++|+||||||||||++.|.+.++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999999874
No 171
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.63 E-value=3.4e-08 Score=93.43 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC---EEEEeCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR---VVLVNQDSF 85 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~---~~~l~~D~~ 85 (303)
...++.+|+|+|+||||||||++.|++.+.+.+ +.+++.|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 356889999999999999999999999997543 556777654
No 172
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.62 E-value=6.2e-07 Score=82.22 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=34.6
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.....+.+|.|+|++||||||+++.|++.+ ++.+++.|.+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~---~~~~i~~D~~ 292 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA---GYVHVNRDTL 292 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG---TCEECCGGGS
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc---CcEEEccchH
Confidence 335567899999999999999999999987 6888888875
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.62 E-value=3e-08 Score=84.34 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
++.+|+|+|++||||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999887
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.59 E-value=1.6e-07 Score=76.97 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.-++.+|+|+||||||||||++.|.+.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44678999999999999999999999874
No 175
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.55 E-value=2.4e-07 Score=88.19 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~~~~l~~D~~ 85 (303)
.+++.+|.|+|.+||||||+++.|++.|.. ..+.+++.|.+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 456789999999999999999999999863 33677777653
No 176
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.54 E-value=1.9e-08 Score=97.93 Aligned_cols=37 Identities=5% Similarity=-0.094 Sum_probs=30.7
Q ss_pred cCcccCCCCccCCCCceecCCCc--EEEEeccccccchh
Q 022073 128 IPNYDFKSYKNNVFPARRVNPSD--VILLEGILVFHDSR 164 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~~~--vvildg~~~~~d~~ 164 (303)
...+|.++.+|+..+.+.+.+++ ++++|||++++|+.
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 34678888888877777777777 99999999999985
No 177
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.52 E-value=7e-08 Score=81.65 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
++|||+|++||||||+++.|.+.+ ++.++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~---g~~~~~~ 32 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY---SAVKYQL 32 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---CEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeEEec
Confidence 689999999999999999999976 5666444
No 178
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.51 E-value=3.3e-07 Score=78.26 Aligned_cols=43 Identities=28% Similarity=0.549 Sum_probs=36.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~~ 88 (303)
...|.+|.|+|++||||||+++.|++.++ .+..+++.|.+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFRSQ 71 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGGTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHHHh
Confidence 66789999999999999999999999985 24678888877543
No 179
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.51 E-value=2.4e-07 Score=81.22 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=32.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~ 86 (303)
..+|.+++|+|+|||||||+++.|++.+.+. +-+.+...+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 8889999999999999999999999998643 33444443333
No 180
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.51 E-value=7.9e-10 Score=91.84 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
+|+|.|++||||||+++.|++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g 28 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 799999999999999999999986433
No 181
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.48 E-value=6.2e-08 Score=76.73 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.1
Q ss_pred Cccccccc-ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
++.|++.. ++++|| + +.++.+++|.|++|||||||++.|++.++
T Consensus 14 ~~~~g~~~~l~~vsl-----~----------i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 14 MLRFGKKFAEILLKL-----H----------TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HHHHHHHHHHHHHHH-----C----------CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccc-----c----------cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45565433 477888 7 99999999999999999999999999983
No 182
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.44 E-value=5.3e-08 Score=94.70 Aligned_cols=36 Identities=8% Similarity=-0.080 Sum_probs=28.6
Q ss_pred CcccCCCCccCCCCceecCCC---cEEEEeccccccchh
Q 022073 129 PNYDFKSYKNNVFPARRVNPS---DVILLEGILVFHDSR 164 (303)
Q Consensus 129 p~~~~~~~~~~~~~~~~~~~~---~vvildg~~~~~d~~ 164 (303)
..+|.++.+|+..+.+.+.++ +++++|||++++|+.
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~ 580 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD 580 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHH
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHH
Confidence 467888888887777666544 699999999999765
No 183
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.44 E-value=5.9e-07 Score=79.32 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.++.+|.|+||+|||||||+..|++.+ +..+|+.|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 456799999999999999999999998 6789999976
No 184
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.43 E-value=2e-08 Score=83.34 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=54.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEE---EEeCCCCCCCCCHHHHHhhcccCCCCCC-cc------------
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVV---LVNQDSFYHNLTEQELARVHEYNFDHPD-AF------------ 108 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~---~l~~D~~~~~~~~~~~~~~~~~~f~~p~-~~------------ 108 (303)
.++.+++|.|+||||||||++.|++. .+. |-+ .+.... . . ....-.+.++.+. .+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~-~-~-----~~~~ig~v~q~~~enl~~~~~~~~~~~~ 91 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA-V-E-----AGEKLGFLPGTLNEKIDPYLRPLHDALR 91 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS-C-C-----TTCCCCSSCC------CTTTHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc-h-h-----hhcceEEecCCHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998 542 111 111110 0 0 0001122222220 00
Q ss_pred ---cHHHHHHHHHHhhCCCccccCcccCCCCccCCCCceecCCCcEEEEeccccc
Q 022073 109 ---DTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (303)
Q Consensus 109 ---d~~~l~~~l~~l~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~ 160 (303)
+.+.+.+.+.. ..++.+|+..+.+.+.+++++++|+|+++
T Consensus 92 ~~~~~~~~~~~l~~------------glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 92 DMVEPEVIPKLMEA------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp TTSCTTHHHHHHHT------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HhccHHHHHHHHHh------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 00111111111 23778888888888899999999999998
No 185
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.38 E-value=4.5e-07 Score=81.16 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~~ 86 (303)
..+|.+|+|+|+|||||||+++.|++.+.+. +-+.+..-+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 8889999999999999999999999998643 33444443333
No 186
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.30 E-value=2.3e-07 Score=77.25 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
.+|.+|.+.|++||||||+++.|++.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999999975
No 187
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.29 E-value=4.2e-09 Score=96.09 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=23.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
+++|+|+||||||||++.|.+.+.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 9999999999999999999997654
No 188
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.26 E-value=6.3e-07 Score=77.46 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+++ ++|.||+|||||||++.|++.+++ +.+.++..++.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~ 81 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELL 81 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTC
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHH
Confidence 6666 999999999999999999999865 46667766554
No 189
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.24 E-value=7.2e-07 Score=76.54 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=40.5
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~ 84 (303)
.+++++++ . +.+..++ ..++.+++|+|+|||||||+++.|.+.+++ .+-+.+..++
T Consensus 6 ~~l~~l~~-----~-~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 6 PEFKKLGL-----P-DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp CCGGGSSC-----C-THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CChHHCCC-----H-HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34556665 2 3444444 678899999999999999999999998864 3555555544
No 190
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.23 E-value=5.5e-07 Score=74.40 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.9
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.++.++.+++|.|+||||||||+++|++.++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588899999999999999999999999884
No 191
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.20 E-value=2.7e-07 Score=91.85 Aligned_cols=37 Identities=5% Similarity=-0.098 Sum_probs=28.1
Q ss_pred cCcccCCCCccCCCCceecCC---CcEEEEeccccccchh
Q 022073 128 IPNYDFKSYKNNVFPARRVNP---SDVILLEGILVFHDSR 164 (303)
Q Consensus 128 ~p~~~~~~~~~~~~~~~~~~~---~~vvildg~~~~~d~~ 164 (303)
...+|.++.+|+..+.+.... ++++|+|+|++++|+.
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~ 842 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFE 842 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHH
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHH
Confidence 346888888887666655543 5799999999999654
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.19 E-value=2.2e-06 Score=67.02 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~ 84 (303)
++..++|.|++|||||||++.+++.+.+.+ ..+++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 677999999999999999999999886544 55555544
No 193
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.18 E-value=1e-07 Score=87.19 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.++ +++|+|+||||||||+++|...+.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 9999 999999999999999999987775
No 194
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.18 E-value=3.2e-07 Score=90.48 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=28.4
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHH-HHHHh
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDM-IIQQL 72 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~-L~~~l 72 (303)
+..++..+..+.+++|+|+||||||||++. |.+.+
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 444555599999999999999999999996 66543
No 195
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.17 E-value=5.3e-07 Score=82.27 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=37.0
Q ss_pred hccCCCcccccccccCcccccCCCCCCCccccccCCCCcEE--EEEeCCCCCcHHHHHHHHHHHh
Q 022073 10 IEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFV--IGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--I~I~G~~GSGKSTla~~L~~~l 72 (303)
++.+..+.|++..++++|+ + +++|.+ ++|+|+||||||||++.|.+..
T Consensus 17 l~~~~~~~y~~~~L~~vsl-----~----------i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 17 VPLAGHVGFDSLPDQLVNK-----S----------VSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCCCCC-CC--CHHHHHH-----S----------CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEeeEEEECCeecCCCce-----E----------ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455577777655788888 7 999999 9999999999999999999863
No 196
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.16 E-value=6.2e-07 Score=79.32 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~ 76 (303)
..+++.|.|.|+.||||||+++.|++.|...+
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~~~~ 35 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAASGGS 35 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 34578999999999999999999999986533
No 197
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.09 E-value=2e-06 Score=85.41 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.4
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMII 69 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~ 69 (303)
+..++..+..|.+++|+|+||||||||++.|.
T Consensus 640 Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34444449999999999999999999999853
No 198
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.08 E-value=4.3e-06 Score=77.46 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEE-eCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLV-NQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l-~~D~~ 85 (303)
+.+|.+|+|+|+|||||||+++.|++.+.+. +-+.+ ..|.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 8899999999999999999999999988643 33444 45543
No 199
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.06 E-value=3.8e-06 Score=70.93 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHH--HH-hCCCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMII--QQ-LHDQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~--~~-l~~~~~~~l~~D~ 84 (303)
.+.++.+++|.|+||||||||++.|+ .. ....+..++..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 47788999999999999999999999 55 3345666666653
No 200
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.06 E-value=4.1e-06 Score=73.09 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC--CCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF--YHNLT 90 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~--~~~~~ 90 (303)
+.+|+|+||+|||||||+..|++.+ +..+++.|.+ |+.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~QvYr~~~ 44 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSMQVYRGMD 44 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGGGGBTTCC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC---ccceeecCcccceeeee
Confidence 5689999999999999999999988 6789999976 66544
No 201
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.03 E-value=1.2e-06 Score=75.49 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..++|+|+||||||||++.|.+...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47999999999999999999998764
No 202
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.03 E-value=7.6e-06 Score=71.32 Aligned_cols=43 Identities=33% Similarity=0.403 Sum_probs=35.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC--CCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLT 90 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~--~~~~~~ 90 (303)
.+.+.+|.|+||+|||||||+..|++.+ +..+++.|. +|+.++
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~qvY~~~~ 51 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKIL---PVELISVDSALIYKGMD 51 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTTTBTTCC
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhC---CCcEEeccccccccccc
Confidence 3456899999999999999999999998 678899987 455443
No 203
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.02 E-value=3.2e-07 Score=82.51 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=44.4
Q ss_pred cccCcccc---cCCCCCCCc---------cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 022073 22 HMDGLEVR---NKETGQPTI---------SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (303)
Q Consensus 22 ~~~~~~~~---~~~~~~~~~---------~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~ 81 (303)
.|++++|+ |++.+.+.+ ...+..++++.+++|+|++||||||+++.|.+.+++ .+.+.+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 67788876 532111122 556666889999999999999999999999999875 3556665
No 204
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.02 E-value=2.6e-06 Score=74.04 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
...|.+|.|+|++||||||+++.|++.++ .+.++++.|.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhHH
Confidence 45688999999999999999999999874 2578888887653
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.99 E-value=6.7e-06 Score=72.31 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=32.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
+.+|.|+|++||||||+++.|++.+ +..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL---PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS---CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCcEEeccch
Confidence 4689999999999999999999998 6889999976
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.99 E-value=2.5e-06 Score=75.93 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQD 83 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D 83 (303)
..++.+++|+|++|||||||++.|.+.+.+ ..+.++..|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 899999999999999999999999998753 234555544
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.97 E-value=3.8e-06 Score=67.75 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.++|+|+||||||||++.|++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 208
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.95 E-value=3.3e-06 Score=75.37 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=38.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
++.++++..|.. ....++.. ..+.+|.+++|.|+||||||||++.|++...+.
T Consensus 46 i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 46 LLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 444555554431 11234444 559999999999999999999999999998764
No 209
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.95 E-value=9.7e-06 Score=73.20 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC--CCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS--FYHNLT 90 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~--~~~~~~ 90 (303)
..+|+|+||+|||||||+..|++.+ +..+++.|. +|+.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~---~~~iis~Ds~QvYr~l~ 43 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF---NGEVINSDSMQVYKDIP 43 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH---TEEEEECCTTTTBSSCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC---CCeEeecCccceecccc
Confidence 4689999999999999999999999 567899998 677664
No 210
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.94 E-value=2.2e-05 Score=68.75 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-EEEEeCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-VVLVNQDS 84 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-~~~l~~D~ 84 (303)
.+|.+|+|+|+|||||||+++.|++.+.+. + +.+...|-
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 367899999999999999999999998754 2 44444443
No 211
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.92 E-value=4e-06 Score=77.73 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
+.+ .+++|+|+||||||||+++|++.+.+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 777 899999999999999999999998753
No 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=1.5e-05 Score=70.50 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=33.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~ 85 (303)
.++|.+|+|+|+|||||||+++.|++.+.+. .+.+...|-+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 4679999999999999999999999988643 3455555544
No 213
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.90 E-value=1e-05 Score=80.70 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=26.4
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
++....++.+++|+|||||||||+++.++..
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3333888999999999999999999998753
No 214
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.90 E-value=6.7e-06 Score=75.66 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=43.9
Q ss_pred ccccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
+.+.++++++.|.. ..+.++.. ..+.+|.+++|.|+||||||||++.|++...+.
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34667788877742 12456667 779999999999999999999999999998754
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.90 E-value=6.6e-06 Score=71.67 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=38.7
Q ss_pred cccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C--EEEEeCC
Q 022073 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--VVLVNQD 83 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~--~~~l~~D 83 (303)
.|+++++ . +.++.+++|+|++|||||||++.|++.+.+. + +.+++.+
T Consensus 24 ~Ld~i~~-----~----------l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 24 GINDKTL-----G----------ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp THHHHHC-----S----------BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHhc-----C----------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 4677777 6 8899999999999999999999999987643 3 6666665
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=2.3e-05 Score=69.11 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
..++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 788999999999999999999999998853 35777888754
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.83 E-value=9.6e-06 Score=70.05 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=26.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+.++.+++|.|++|||||||+..|+..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 366788999999999999999999998654
No 218
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.82 E-value=3.2e-06 Score=78.31 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=39.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-C-E-EEEeCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-V-VLVNQD 83 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~-~-~~l~~D 83 (303)
++++|++++|. .++..+.+|.+++|.|+||||||||++.|++.+.+. + - ++++.+
T Consensus 119 i~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred hhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 34555555442 344458899999999999999999999999987532 4 3 556553
No 219
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.81 E-value=1.1e-05 Score=72.47 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=29.5
Q ss_pred cccCCCC--cEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 41 AENLHRQ--PFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 41 ~~~~~~~--~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
++..+.+ +..++|+|+||||||||++.|++.+++
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444777 899999999999999999999999864
No 220
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.80 E-value=1.4e-05 Score=79.90 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=26.3
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMII 69 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~ 69 (303)
.+++.....+.+++|+|||||||||+++.++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444458889999999999999999999994
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.80 E-value=2.4e-06 Score=75.78 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=36.0
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeC
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ 82 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~ 82 (303)
+...+..+.++.+++|+|++||||||+++.|.+.+++. +.+.++.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 34455557888999999999999999999999998753 5566654
No 222
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.79 E-value=1.6e-05 Score=63.89 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..++ +.+|+|+|||||||++++|...+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6666 899999999999999999999875
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=5.7e-06 Score=79.41 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
|+|+|+||||||||++.|++.+.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 999999999999999999998744
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.78 E-value=1.1e-05 Score=67.19 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=32.6
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--------~~~~~l~~D~ 84 (303)
.+.++.+++|+|+||||||||++.|++.+.+ .+..+++.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3778899999999999999999999996543 1256666654
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.78 E-value=1.2e-05 Score=71.84 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..++.+++|+|++||||||+++.|.+.+++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 345669999999999999999999998865
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.76 E-value=2.5e-05 Score=68.42 Aligned_cols=41 Identities=41% Similarity=0.669 Sum_probs=34.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
..++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 567899999999999999999999998854 34677777754
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=1.2e-05 Score=65.50 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+++|+|+|||||||+++.|++.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4799999999999999999999885
No 228
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=97.76 E-value=8.5e-07 Score=74.66 Aligned_cols=46 Identities=48% Similarity=0.810 Sum_probs=43.2
Q ss_pred cccCCCeeEecccceeeeeeeeecCCCCCCcCeeeehhHHHHHHhh
Q 022073 255 CKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVGT 300 (303)
Q Consensus 255 ~~~~~n~~~L~~~~~i~g~~~i~~~~~t~~~~f~f~~~~~~~~~~~ 300 (303)
++.++|++++.++++++++.|++||++|++.+|.||.+||++||+|
T Consensus 29 ~~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~y 74 (243)
T 1bd3_D 29 ITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIE 74 (243)
T ss_dssp HHHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999997
No 229
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.74 E-value=1.2e-05 Score=72.41 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
++++.+++|.|++||||||+++.|++.+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 88899999999999999999999999874
No 230
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.73 E-value=1.3e-05 Score=64.45 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..++..++|.|++||||||+++.+++.+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44578999999999999999999999874
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.63 E-value=3.2e-05 Score=69.67 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=27.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..++.+++|+|++||||||+++.|.+.+++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 677899999999999999999999998865
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.62 E-value=4.2e-05 Score=64.86 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
..++ ++|.|++||||||+++.|++.+. .+.+.++.
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~ 82 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 82 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeH
Confidence 5666 89999999999999999999885 34555554
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.62 E-value=1.5e-05 Score=63.78 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
.+++|+|+||||||||++.|.+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999998764
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.62 E-value=3.7e-05 Score=67.02 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=34.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---CCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~---~~~~~l~~D~~~ 86 (303)
.++.+|+|+|++||||||++..|+..+.+ ..+.+++.|.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 45789999999999999999999998853 357888888753
No 235
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.61 E-value=2.8e-05 Score=73.32 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=33.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHH--HHHHhC-CCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDM--IIQQLH-DQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~--L~~~l~-~~~~~~l~~D~ 84 (303)
.+.++.+++|+|+||||||||++. +++.++ ..+.++++..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 467788999999999999999999 678776 45677777654
No 236
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.61 E-value=4.8e-05 Score=71.04 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC----CCEEEEeCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDS 84 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~----~~~~~l~~D~ 84 (303)
.+.+.+|.++|.+||||||+++.|++.|+. ..+.+++.|.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 346789999999999999999999999974 2357788776
No 237
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.61 E-value=4.2e-05 Score=67.37 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~ 81 (303)
+..+++|+|++||||||+++.|.+......+.++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~ 37 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE 37 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE
Confidence 45799999999999999999999876443444443
No 238
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.60 E-value=6e-05 Score=68.84 Aligned_cols=39 Identities=33% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~ 84 (303)
.++.+++|+|++||||||+++.|.+.+++. +-+++..|.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 567899999999999999999999998754 334444443
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=4.7e-05 Score=62.77 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
.+.++.+++|.|++||||||++..|+. ....++.+++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 377888999999999999999999998 4344677888765
No 240
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.59 E-value=2e-05 Score=64.54 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=29.6
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+.++|++++|+. +.... ....++..|+|+|++|||||||++.|.+.
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566665531 22222 45888999999999999999999999764
No 241
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.58 E-value=0.00031 Score=60.85 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
+.+.+|.+-|.-||||||.++.|.+.|++.++.++...
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~ 121 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT 121 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC
Confidence 45899999999999999999999999999888776653
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.58 E-value=1.7e-05 Score=74.82 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCC--EEEEeCCCCCCCCCHHHHHhhcccCCCCCCcccHHHHHHHHHHhh
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR 121 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~--~~~l~~D~~~~~~~~~~~~~~~~~~f~~p~~~d~~~l~~~l~~l~ 121 (303)
.+.++.+++|.|++|||||||++.+++.+.+.+ +.++..++ +..++..... .++ ++.+. +....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee-----~~~~l~~~~~-~~g----~~~~~----~~~~g 342 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-----SRAQLLRNAY-SWG----MDFEE----MERQN 342 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-----CHHHHHHHHH-TTS----CCHHH----HHHTT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC-----CHHHHHHHHH-HcC----CCHHH----HHhCC
Confidence 477889999999999999999999999876443 34444332 1222211110 111 22221 11110
Q ss_pred CCC--ccccCcccCCCCccCCCCceecCCCcEEEEeccccccch
Q 022073 122 HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (303)
Q Consensus 122 ~~~--~v~~p~~~~~~~~~~~~~~~~~~~~~vvildg~~~~~d~ 163 (303)
... ......++.++.++...+.+...+++++|+| |+.++|.
T Consensus 343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~ 385 (525)
T 1tf7_A 343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR 385 (525)
T ss_dssp SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence 000 0111234556566655555556889999999 9988754
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.58 E-value=1e-05 Score=75.91 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeC
Q 022073 43 NLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (303)
Q Consensus 43 ~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~ 82 (303)
..+..+..++|+|++||||||+++.|.+.+++ .+.+.+..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 33567888999999999999999999999875 35555543
No 244
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.56 E-value=5.8e-05 Score=65.01 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=28.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
..++ ++|.|++||||||+++.|++.+. .+.+.++.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~ 106 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 106 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecH
Confidence 5556 89999999999999999999885 34555554
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.56 E-value=4.4e-05 Score=60.74 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D 83 (303)
++.+++|+|++||||||++..|.+.|... .+.++..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 35689999999999999999999987533 35566654
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.53 E-value=6.7e-05 Score=68.12 Aligned_cols=41 Identities=10% Similarity=0.297 Sum_probs=30.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH--hC------CCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ--LH------DQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~--l~------~~~~~~l~~D~ 84 (303)
.+.++.++.|.|++|||||||++.|+-. ++ ..++++++.+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3667889999999999999999977532 21 12377888765
No 247
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=1.1e-05 Score=71.62 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
..++|.||+|+||||+++.|++.++. .+...+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~ 86 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPV 86 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechH
Confidence 57899999999999999999999853 233444433
No 248
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.51 E-value=0.00016 Score=67.23 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
...+.+|.++|.+||||||+++.|++.+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999874
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.49 E-value=4.6e-05 Score=63.30 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~ 84 (303)
+.++.+++|.|++|||||||++.|+..+. ...+.+++.+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 66788999999999999999999997653 23466666653
No 250
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=7.6e-05 Score=62.51 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH--hC------CCCEEEEeCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ--LH------DQRVVLVNQDS 84 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~--l~------~~~~~~l~~D~ 84 (303)
+.++.+++|.|++|||||||++.|+.. ++ ..++.+++.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 667889999999999999999999984 32 24577777765
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.45 E-value=7.6e-05 Score=59.75 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
...+++|+|++||||||+++.|.+.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3568999999999999999999988753
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.45 E-value=0.00021 Score=62.24 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=41.8
Q ss_pred ccccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
+..+++++.|.+.. ...+.. ++.+|+|+|++||||||++..|+..+.+ ..+.+++.|..
T Consensus 77 ~~~~~l~~~~~~~~----~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSSC----CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCCC----ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 44566766664321 223333 7899999999999999999999998853 35677777754
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.42 E-value=0.00011 Score=59.70 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.+..|.|+|++||||||++..|++.. + .+++.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g---~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG---H-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT---C-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC---C-eEEecchh
Confidence 46789999999999999999999876 2 67777753
No 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.38 E-value=9.2e-05 Score=67.58 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
-|+|+|+||||||||++.|.+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 469999999999999999998653
No 255
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.37 E-value=0.00015 Score=64.90 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=43.3
Q ss_pred ccccccCcccccCCCCCCCcc--------------ccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 19 SGFHMDGLEVRNKETGQPTIS--------------AAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.+.|+|+++.|+.+... +. +....+.+|..++|.|++|+|||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~er~~-Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 457789999988765432 22 567778899999999999999999999998865
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.34 E-value=0.00025 Score=61.79 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
.+ +.+|+++|++|+||||++..|+..+.. ..+.+++.|.+.
T Consensus 96 ~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 96 KI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44 899999999999999999999988753 357788888654
No 257
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.30 E-value=0.00021 Score=63.53 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~ 85 (303)
..++.+|+|+|++|+||||+++.|++.+. ...+.+++.|..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 78899999999999999999999998774 234677777654
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.00036 Score=63.70 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~ 86 (303)
++.+|+++|++||||||++..|+..+... .+.+++.|.+-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 78899999999999999999999988643 46777877543
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.30 E-value=0.0024 Score=53.85 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..+.-+.|.|++|+||||+++.+++.++. .++.++...+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV-PFLAMAGAEFV 76 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC-CEEEEETTTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-CEEEechHHHH
Confidence 44556889999999999999999998853 35666666554
No 260
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.29 E-value=0.00014 Score=58.77 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
......|+|.|++|||||||++.|.+..
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3345789999999999999999999854
No 261
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.28 E-value=0.00013 Score=71.99 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=26.9
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
.+++.. .++.+++|+|||||||||+++.+++..
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 334444 667899999999999999999999863
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.26 E-value=0.00026 Score=63.14 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--------CCEEEEeCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------QRVVLVNQDSF 85 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--------~~~~~l~~D~~ 85 (303)
.+.++.+++|.|++|||||||++.|+..+.. ..+++++....
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4888999999999999999999999998731 12477777653
No 263
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.23 E-value=0.00015 Score=65.14 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
...+ +.+|+|+|||||||+..+|.-.+.
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 6666 788999999999999999986653
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.0003 Score=64.33 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=34.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
.++.+|+++|++||||||++..|+..+.. ..+.+++.|.+.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 35899999999999999999999988753 357788888654
No 265
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.20 E-value=0.00017 Score=70.70 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.+++|+|||||||||+++.+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999999999864
No 266
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00022 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
..++ +.+|.|+|||||||++.+|....
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 7777 99999999999999999998755
No 267
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.18 E-value=3.5e-05 Score=64.43 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
.+++|+|||||||||++++|++.+.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC
Confidence 478999999999999999999998653
No 268
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.18 E-value=0.0002 Score=72.48 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=32.7
Q ss_pred ccccC-----cccccCCCCCCCccccccCCCC-------cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 21 FHMDG-----LEVRNKETGQPTISAAENLHRQ-------PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 21 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-------~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.+++ ++.+|.+ ..+...+++..... +.+++|+|||||||||+++.+ +.+
T Consensus 751 l~i~~~rHP~l~~~~~~-~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFFG-DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp EEEEEECCCC------C-CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred EEEEeccccEEEEEecC-CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 45555 5555522 12455556665665 799999999999999999999 765
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00029 Score=58.95 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHh--CCCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQL--HDQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l--~~~~~~~l~~D~ 84 (303)
.+.++.+++|.|++||||||++..++..+ ...++.+++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 36778899999999999999988776543 234677777764
No 270
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.17 E-value=6.9e-05 Score=74.79 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=25.5
Q ss_pred cccccCCCCcEEEEEeCCCCCcHHHHHHHH
Q 022073 39 SAAENLHRQPFVIGVAGGAASGKTTVCDMI 68 (303)
Q Consensus 39 ~~~~~~~~~~~iI~I~G~~GSGKSTla~~L 68 (303)
..++..+..|.+++|+|+||||||||++.|
T Consensus 659 k~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 659 RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 344444999999999999999999999985
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.00053 Score=58.09 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
-+.|.|++|+||||+++.|++.++. .++.++..++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~~~ 82 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV 82 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCSST
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHHHH
Confidence 4889999999999999999998853 35666665544
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.00053 Score=62.79 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=34.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
+|.+|+++|++||||||++..|+..+.. ..+.+++.|.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5899999999999999999999987753 357888888765
No 273
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.13 E-value=0.00047 Score=64.31 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~~ 87 (303)
.+++ +.|.|++|+|||||++.|++.++ .+.+.++..++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVE 102 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTS
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHH
Confidence 4555 89999999999999999999885 3567777665543
No 274
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00023 Score=62.20 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+.+++|.|+||||||||++.|. .+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 46799999999999999999999 664
No 275
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00016 Score=63.18 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
.+.+++|.|+||||||||++.|.+...+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 4679999999999999999999987754
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.08 E-value=0.00019 Score=64.02 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+.+++|+|+||||||||++.|.+.+.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 567999999999999999999998664
No 277
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.06 E-value=0.00052 Score=54.44 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=28.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
.+.-|.|+|+||+||||++..|.+. +..+++.|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r----G~~lvaDD~v 49 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR----GHQLVCDDVI 49 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT----TCEEEESSEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc----CCeEecCCEE
Confidence 4678999999999999999999884 5666666643
No 278
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.05 E-value=0.00019 Score=62.69 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~ 71 (303)
-|+|+|++|||||||++.|.+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998764
No 279
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0028 Score=57.18 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..+.=|.+.||+|+|||++|+++++.++. .+..++...+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s~l~ 219 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC-KFIRVSGAELV 219 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGGGGS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhHHhh
Confidence 555667899999999999999999999853 34555554444
No 280
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00056 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.+.+|.|+|||||||++.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998665
No 281
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.01 E-value=0.00048 Score=61.37 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
..+.+|+|+|++|||||||.+.|.+.+.+ ..+.++..|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 44789999999999999999999987643 24666666643
No 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.00 E-value=0.00049 Score=59.93 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=25.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
...+..+.|.|++|+||||+++.|++.++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 45667899999999999999999999884
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.98 E-value=0.00046 Score=55.96 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
...|+|.|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999999853
No 284
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.96 E-value=0.00057 Score=64.21 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
...+.+|.++|.+||||||+++.|++.++. ....+++.|++
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 456789999999999999999999998742 24566777763
No 285
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.94 E-value=0.00052 Score=61.38 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV 80 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l 80 (303)
.++..|.|.|+.||||||+++.|++.|...++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~t 81 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 81 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEE
Confidence 45789999999999999999999998865554433
No 286
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.93 E-value=0.00044 Score=60.97 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEE
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLV 80 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l 80 (303)
.++.|.|.|+.||||||+++.|++.|...++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~t 36 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYV 36 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CCEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEE
Confidence 4679999999999999999999998865554433
No 287
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.92 E-value=8.6e-05 Score=64.91 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..++.+++|+|+||||||||++.|.+.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 44678999999999999999999987653
No 288
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.88 E-value=0.00044 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
..++ +.+|+|+||||||||+.+|.-.+
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 5666 99999999999999999998665
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.87 E-value=0.0017 Score=59.46 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=35.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~~~~~~l~~D~~~ 86 (303)
..++.+|+++|++|+||||++..|+..+. ...+.+++.|.+.
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35678999999999999999999998774 4568999999765
No 290
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.86 E-value=0.00057 Score=54.77 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=26.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
+|.|+|++||||||+|..|+.. + ..+.++....
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCC
Confidence 3789999999999999999876 3 3466777643
No 291
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0011 Score=59.20 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
.+.++.++.|.|++|||||||+..++..+.. ..+.+++.+.-.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3667899999999999999999999987642 346788876543
No 292
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.85 E-value=0.0014 Score=58.51 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~ 84 (303)
.++..+|+|+|.+|+||||++..|+..+. ...+.+++.|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 45678999999999999999999998763 34577788774
No 293
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.00072 Score=53.76 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+..+.|.|++|+||||+++.+++.+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999873
No 294
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=58.00 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..+.-|.|.||+|+|||++++.+++.+....+..++...+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 34567889999999999999999999844456666665544
No 295
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.83 E-value=0.001 Score=57.71 Aligned_cols=37 Identities=19% Similarity=0.632 Sum_probs=29.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
.+.+..+.|.||+|+|||++++.|++.++. .++.++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~-~~i~v~~ 69 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI-NPIMMSA 69 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTC-CCEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeH
Confidence 556678889999999999999999999853 3455554
No 296
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.77 E-value=0.00078 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..+.|.|++|+||||+++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999998774
No 297
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.76 E-value=0.00084 Score=61.52 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
...+.+++|.|+|||||||++++|...+.+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 455779999999999999999999998864
No 298
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.76 E-value=0.0016 Score=56.49 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=30.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~~~ 86 (303)
...+.|.|++|+||||+++.|++.+... .+..+++..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 4589999999999999999999988543 25666665443
No 299
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.76 E-value=0.00036 Score=68.92 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=20.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVC 65 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla 65 (303)
++.+.+++|+|.||||||||+
T Consensus 33 iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHH
Confidence 888999999999999999998
No 300
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.75 E-value=0.00075 Score=53.39 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
++..|+|+|.+|+|||||.+.|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999863
No 301
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.74 E-value=0.00084 Score=55.70 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~ 85 (303)
.+..+.|.|++|+||||+++.+++.+.. ..+.+++...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568899999999999999999987753 23556655443
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.73 E-value=0.0015 Score=60.88 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~~ 86 (303)
.++.+|+|+|++||||||++..|+..+. ...+.+++.|.+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 5678999999999999999999997764 3467888888754
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.73 E-value=0.00078 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..|+|.|++|+|||||.+.|.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999986
No 304
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.71 E-value=0.0012 Score=57.13 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+.-+.|.|++|+||||+++.+++.++. ....++...+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l~ 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-TFLNISAASLT 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-EEEEEESTTTS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEeeHHHHh
Confidence 3567899999999999999999998842 24555554443
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.68 E-value=0.00077 Score=61.76 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
.++.+|+|+|++||||||++..|+..+.. ..+.+++.|.+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 34679999999999999999999987742 358889998765
No 306
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.0014 Score=56.15 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..+.-+.|.|++|+||||+++.+++.++. .+..++...+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~~~~ 88 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGSELV 88 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGGGGC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehHHHH
Confidence 44556899999999999999999999853 34555554444
No 307
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.67 E-value=0.0026 Score=55.25 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=45.8
Q ss_pred CCCcEEEEeccccccchhh--hhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccc
Q 022073 147 NPSDVILLEGILVFHDSRV--RELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 224 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~--~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~a 224 (303)
.....+|+|.-..+.. .+ ....-+.|||.+|....++++..|. .. +.+...+....+. .. .+....
T Consensus 192 ~~G~~vildid~~g~~-~l~~~~~~pi~IfI~pps~~~L~~L~~R~-----t~-~~i~~rl~~a~~~-e~----~~~~~f 259 (295)
T 1kjw_A 192 EQGKHCILDVSANAVR-RLQAAHLHPIAIFIRPRSLENVLEINKRI-----TE-EQARKAFDRATKL-EQ----EFTECF 259 (295)
T ss_dssp HTTCEEEECCCTTHHH-HHHHTTCCCEEEEECCSSHHHHHHHCTTS-----CH-HHHHHHHHHHHHH-HH----HHGGGC
T ss_pred hcCCeEEEEeCHHHHH-HHHhcccCCeEEEEECCCHHHHHHHHhcC-----CH-HHHHHHHHHHHHH-HH----hccccC
Confidence 4456788886544432 22 2234589999998777777744442 11 2222222221100 00 012457
Q ss_pred cEEecCCCCCHHHHHHHHHHHH
Q 022073 225 DIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 225 D~iI~~~~~~~~~~~~~v~~i~ 246 (303)
|++|.|+ +-+.+++.+.+.|.
T Consensus 260 d~vivNd-~le~a~~~l~~ii~ 280 (295)
T 1kjw_A 260 SAIVEGD-SFEEIYHKVKRVIE 280 (295)
T ss_dssp SEEECCS-SHHHHHHHHHHHHH
T ss_pred eEEEECc-CHHHHHHHHHHHHH
Confidence 8888877 54556666655554
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.67 E-value=0.0023 Score=56.83 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--------CCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--------DQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--------~~~~~~l~~D~ 84 (303)
.+..+.++.|.|++|||||||+..++.... ..++.+++.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 477899999999999999999999988631 23577888765
No 309
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.0013 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
+...|+|.|++|+|||||++.|.+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999986
No 310
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.00088 Score=53.12 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+..+.|.|++|+||||+++.+++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999874
No 311
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.66 E-value=0.00096 Score=60.25 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..++..+||.|++|||||||.+.|.+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 66778999999999999999999998
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.65 E-value=0.0025 Score=52.35 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D~ 84 (303)
+...|+|+|.+||||||++..|...+.. ..+.++..|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 4579999999999999999999987532 2456666553
No 313
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.65 E-value=0.0009 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
+...|+|.|.+|+|||||.+.+.+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999987
No 314
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.63 E-value=0.0015 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.+.+|.|+|||||||++.+|.-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999987764
No 315
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.63 E-value=0.0031 Score=53.29 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC-CCCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH-DQRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~-~~~~~~l~~D~~ 85 (303)
..+..++.+.|..|+||||++..|+..+. ...+.+++.|.-
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45678999999999999999999997765 225778888753
No 316
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.61 E-value=0.00048 Score=68.82 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=20.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVC 65 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla 65 (303)
+++..+|+|+|.|||||||||
T Consensus 43 iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 43 LPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EESSSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEECCCCCcHHHHH
Confidence 888899999999999999998
No 317
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.60 E-value=0.0012 Score=62.39 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
++..++|.||+|+||||+++.|++.+++ ....++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEec
Confidence 5779999999999999999999999854 23444443
No 318
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.60 E-value=0.00049 Score=68.51 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVC 65 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla 65 (303)
+++..+++|+|.|||||||||
T Consensus 41 iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 888899999999999999997
No 319
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.60 E-value=0.00045 Score=68.89 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=25.5
Q ss_pred ccCcccccCCCCCCCccccccCCCCcEEEEEeCCCCCcHHHHH
Q 022073 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVC 65 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla 65 (303)
|+||++ + +++..+++|+|.|||||||||
T Consensus 14 Lkni~~-----~----------ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITV-----R----------IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCC-----E----------EETTSEEEEEESTTSSSHHHH
T ss_pred cCccee-----c----------cCCCcEEEEECCCCCcHHHHH
Confidence 677777 7 888899999999999999998
No 320
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.59 E-value=0.0019 Score=59.79 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
|.|.|++|+||||+++.+++.++. .++.++..++.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~-~f~~is~~~~~ 86 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV-PFFHISGSDFV 86 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHHHH
Confidence 889999999999999999998853 35556665554
No 321
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.58 E-value=0.00082 Score=59.41 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHH-HHHHHHhCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVC-DMIIQQLHDQR 76 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla-~~L~~~l~~~~ 76 (303)
..++++|.|.|+.||||||++ +.|++.+...+
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 455789999999999999999 99999986544
No 322
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.58 E-value=0.0023 Score=54.60 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
...+.-+.|.|++|+||||+|+.++..++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 445678999999999999999999998753
No 323
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.57 E-value=0.00097 Score=53.00 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=21.7
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.........+...|+|+|.+|+|||||.+.|.+
T Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 11 SSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ----------CEEEEEEEETTSSHHHHHHHHHT
T ss_pred cCCccCCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 333444455678999999999999999999986
No 324
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.57 E-value=0.0011 Score=57.46 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=46.1
Q ss_pred CCCcEEEEeccccccch-hhhhhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccccc
Q 022073 147 NPSDVILLEGILVFHDS-RVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 225 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~-~~~~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~aD 225 (303)
.....+|+|--..+... ......-+.|||.+|....++++++|... ...+.+..+..... .. +....|
T Consensus 187 ~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~---e~~~~~~~r~~k~e-~e-------~~~~fD 255 (292)
T 3tvt_A 187 EKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE---EQAKKTYERAIKME-QE-------FGEYFT 255 (292)
T ss_dssp HHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT---THHHHHHHHHHHHH-HH-------HTTTCS
T ss_pred HcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc---hhHHHHHHHHHHHH-Hh-------hhhhCC
Confidence 44567788764433211 11222348899999888777776655321 12223332222111 01 135689
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 022073 226 IIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 226 ~iI~~~~~~~~~~~~~v~~i~ 246 (303)
+||.|+ +.+.+++.+.+.|.
T Consensus 256 ~vIvNd-dle~a~~~l~~iI~ 275 (292)
T 3tvt_A 256 GVVQGD-TIEEIYSKVKSMIW 275 (292)
T ss_dssp EEECCS-SHHHHHHHHHHHHH
T ss_pred EEEECc-CHHHHHHHHHHHHH
Confidence 999877 44455555555544
No 325
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0013 Score=53.55 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 35 QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 35 ~~~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+|.....+.......-|+|+|.+|+|||||++.|.+.
T Consensus 13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp ---------CCSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhC
Confidence 3334444444556678999999999999999999873
No 326
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.54 E-value=0.018 Score=50.43 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
...+.|.|++|+||||+++.++..++. .++.++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~~ 89 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA-NIKTTAAP 89 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecch
Confidence 345899999999999999999998853 34555543
No 327
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.00053 Score=60.72 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=22.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
+.+.||+|+||||+++.+++.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998753
No 328
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.0019 Score=57.48 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~ 84 (303)
.+.++.++.|.|++|||||||+..++.... ...+.+++.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 355788999999999999999999986543 23578888875
No 329
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.0017 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 45567899999999999999999987
No 330
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.51 E-value=0.0014 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+..+.|.|++|+||||+++.+++.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34889999999999999999999875
No 331
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.51 E-value=0.007 Score=55.76 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=52.1
Q ss_pred cCCCcEEEEeccccccchhhh--hhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhcccccccc
Q 022073 146 VNPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKY 223 (303)
Q Consensus 146 ~~~~~vvildg~~~~~d~~~~--~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~ 223 (303)
+.....+|+|--..+. ..++ ...-+.|||..|.-..++++.+|.................+.+ -. +...
T Consensus 278 l~~Gk~~iLdId~qg~-~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e-~~-------~~~~ 348 (468)
T 3shw_A 278 IDQDKHALLDVTPNAV-DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLR-KN-------NHHL 348 (468)
T ss_dssp HTTTCEEEECCCHHHH-HHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHH-HH-------HGGG
T ss_pred HHCCCeEEEEeCHHHH-HHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHH-Hh-------hhcc
Confidence 3456778888744332 1222 2334899999999988887655543222233343333321111 01 1356
Q ss_pred ccEEecCCCCCHHHHHHHHHHHHHH
Q 022073 224 ADIIIPRGGDNHVAIDLIVQHIRTK 248 (303)
Q Consensus 224 aD~iI~~~~~~~~~~~~~v~~i~~~ 248 (303)
.|++|.|+...+.+++.+.+.|...
T Consensus 349 fD~vIvNddl~d~a~~~L~~ii~~~ 373 (468)
T 3shw_A 349 FTTTINLNSMNDGWYGALKEAIQQQ 373 (468)
T ss_dssp CSEEEECBTTBCHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHHHh
Confidence 7898887733235777766666543
No 332
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0023 Score=58.46 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..+.=|.+.||+|+|||++|+++++.++. .++.++...+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~~l~ 243 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGSEFV 243 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGGGTC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecchhh
Confidence 556677999999999999999999999853 34556655544
No 333
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0013 Score=58.17 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 022073 51 IGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l 72 (303)
+.|.|++|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999954
No 334
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.51 E-value=0.0018 Score=50.94 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 445678999999999999999999863
No 335
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.50 E-value=0.0012 Score=50.79 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.-|.|.|++|+|||++|+.|.....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999998653
No 336
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0023 Score=58.45 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
++.+.=|.+.||+|+|||++|+++++.++. .+..++...+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~l~ 252 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQLV 252 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGGC
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhhhh
Confidence 566778999999999999999999999853 34556665554
No 337
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.49 E-value=0.00052 Score=62.53 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=26.6
Q ss_pred cccCCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 41 AENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 41 ~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
++..++.+..|+|+|++|||||||++.|++.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3334778889999999999999999999875
No 338
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0025 Score=58.26 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..+.=|.+.||+|+|||++|+++++.++. .++.++...+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s~l~ 252 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPASGIV 252 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGTC
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehhhhc
Confidence 566778999999999999999999999853 34556665554
No 339
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0019 Score=57.69 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCC---CEEEEeC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQ 82 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~~---~~~~l~~ 82 (303)
.+.|.|++|+||||+++.+++.+... .+..+++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 89999999999999999999988654 2344553
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.44 E-value=0.0022 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..+...|+|+|.+|+|||||++.|.+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999873
No 341
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.44 E-value=0.0022 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.+.+|+|+|||||||++.+|.-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999986544
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.42 E-value=0.002 Score=50.71 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.++...|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999999999976
No 343
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.41 E-value=0.0016 Score=56.73 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+...|+|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999874
No 344
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.40 E-value=0.00053 Score=65.71 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~ 75 (303)
....+..++|.|++|+||||+++.|++.+++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 35667799999999999999999999998654
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.38 E-value=0.0028 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..+..-|+|.|.+|+|||||++.+..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 44557899999999999999988876
No 346
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.38 E-value=0.0016 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=21.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..+...|+|+|.+|+|||||++.|.+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 456688999999999999999998753
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.36 E-value=0.0025 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
...-|+|+|.+|||||||++.|.+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999986
No 348
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.36 E-value=0.0027 Score=48.93 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..|+|.|.+|+|||||++.|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 349
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.35 E-value=0.0019 Score=63.86 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
....+.-|+|.|++||||||+++.|++.++. ..+.++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLING 271 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEc
Confidence 3567788999999999999999999998853 2344544
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.35 E-value=0.0032 Score=49.05 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.++...|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45567899999999999999999976
No 351
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.35 E-value=0.0013 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..|+|.|++|+|||||++.|.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 352
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0024 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.....|+|+|++|||||||++.|.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999874
No 353
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.34 E-value=0.0019 Score=52.23 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=23.1
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.............-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 14 LVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp --------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 3444444455678899999999999999999974
No 354
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.34 E-value=0.0014 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
+...|+|.|++|+|||||++.|.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999864
No 355
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.34 E-value=0.0028 Score=54.82 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
+.-+.|.|++|+||||+++.+++.++. .++.++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~-~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC-CEEEEcchhc
Confidence 446779999999999999999999853 4566666544
No 356
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.0025 Score=56.05 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--------CCCEEEEeCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--------DQRVVLVNQDS 84 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--------~~~~~~l~~D~ 84 (303)
.+..+.++.|.|++||||||++..++.... ...+.+++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 356788999999999999999999987642 23567888765
No 357
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.32 E-value=0.0024 Score=55.32 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=30.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC------CCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~------~~~~~l~~D~~~ 86 (303)
..+.-+.|.|++|+||||+++.+++.+.. ..++.++...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 34457899999999999999999988742 134555555443
No 358
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.32 E-value=0.0021 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......|+|+|.+|+|||||++.|.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 345578999999999999999999874
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.32 E-value=0.0027 Score=50.18 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3457899999999999999999986
No 360
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.31 E-value=0.003 Score=50.51 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 45567899999999999999999986
No 361
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.31 E-value=0.0029 Score=48.92 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|.|++|+|||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999986
No 362
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.31 E-value=0.0033 Score=54.86 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
.+.-+.|+|+||+||||++..|.+. +..++..|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~----g~~lv~dD~ 176 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR----GHRLVADDN 176 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT----TCEEEESSE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc----CCceecCCe
Confidence 5678999999999999999999884 455555543
No 363
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.30 E-value=0.0028 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..+..-|+|+|.+|+|||||++.|.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 44567899999999999999999976
No 364
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.29 E-value=0.0026 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..|++.|.+|||||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999863
No 365
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0025 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 022073 51 IGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l 72 (303)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.28 E-value=0.003 Score=51.99 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC-CCEEEEeCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~-~~~~~l~~D 83 (303)
+...|+|+|.+|||||||+..|...+.. ..+..+..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 4578999999999999999999887532 245556554
No 367
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.27 E-value=0.0038 Score=57.59 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=36.1
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CCCEEEEeCC
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQD 83 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~~~~~~l~~D 83 (303)
++.+...+.++.++.|+|++|+|||||+..++..+. ...+.+++.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 444445588899999999999999999999988653 2357777765
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.27 E-value=0.0021 Score=52.49 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.++...+.|.||+|+||||+|..|++.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344689999999999999999999874
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.27 E-value=0.0026 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.....-|+|+|.+|||||||++.|.+.
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 455678999999999999999999863
No 370
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.27 E-value=0.0021 Score=57.37 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
.+.-+.+.||+|+|||++|+.|++.++. .++.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~-~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV-PFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-CEEEech
Confidence 3456889999999999999999999842 2444444
No 371
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.0025 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.++.++|+.||||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999986665544
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.26 E-value=0.003 Score=51.07 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......|+|.|.+|+|||||++.|.+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 445678999999999999999999874
No 373
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0033 Score=57.70 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..+.=|.+.||+|+|||++|+++++.++. .+..++...+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~L~ 280 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSELV 280 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGGGC
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHHhh
Confidence 567778999999999999999999999853 34555555444
No 374
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.25 E-value=0.0038 Score=54.72 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
..+.-+.|.|++|+|||++|+.+++.++. .++.++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~ 84 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANS-TFFSVSS 84 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCC-CEEEEch
Confidence 34567899999999999999999998853 2344444
No 375
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.002 Score=57.36 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..+..+.|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4466899999999999999999999773
No 376
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.25 E-value=0.0024 Score=55.94 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~ 84 (303)
.+..+.|.|++|+||||+++.+++.+.. ..+.+++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3457889999999999999999998732 2455565543
No 377
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.25 E-value=0.0037 Score=57.52 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
.+.-|.|.||+|+|||++++.++..+....++.++..++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 4467889999999999999999999843345556655443
No 378
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.24 E-value=0.0032 Score=48.66 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|.|.+|||||||++.|.+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999986
No 379
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.21 E-value=0.0043 Score=49.68 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.+...-|+|+|.+|+|||||++.|.+.
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999874
No 380
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0022 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.|.|++|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999864
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.003 Score=51.65 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......|+|+|++|+|||||++.|.+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344568999999999999999999874
No 382
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.20 E-value=0.054 Score=46.27 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
.+.+|.+-|.-||||++..+.|.+.++|.++.++...
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~ 110 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFK 110 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECC
Confidence 5899999999999999999999999999988887653
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.20 E-value=0.004 Score=49.22 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..+...|+|+|.+|+|||||++.|.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 44567899999999999999999986
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.003 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|+|.+|+|||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999976
No 385
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=50.81 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhc
Confidence 44456799999999999999999864
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.18 E-value=0.0034 Score=50.19 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHc
Confidence 34457899999999999999999986
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.17 E-value=0.0037 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|+|.+|+|||||.+.|.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999986
No 388
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.17 E-value=0.0032 Score=48.95 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
....-|+|.|.+|+|||||++.|.+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999863
No 389
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.16 E-value=0.0014 Score=55.67 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhC
Q 022073 51 IGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 51 I~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.|.|++|+||||+++.|++.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 77999999999999999999875
No 390
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.15 E-value=0.0031 Score=49.54 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|.|.+|+|||||++.|.+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 44567899999999999999999864
No 391
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.13 E-value=0.0027 Score=58.14 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
.-|.+.|++|+||||+++.|++.++. ....++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~ 83 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA-PFIKVEA 83 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEG
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecc
Confidence 44889999999999999999999853 3444554
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.12 E-value=0.0036 Score=48.60 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|+|.+|+|||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999986
No 393
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.11 E-value=0.0031 Score=53.15 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......|+|+|.+|+|||||++.|.+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 455688999999999999999999863
No 394
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.11 E-value=0.0038 Score=48.91 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc
Confidence 44567899999999999999999987
No 395
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.11 E-value=0.003 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
...|+|+|++|||||||.+.|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999874
No 396
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0025 Score=51.00 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
.....-|+|+|.+|+|||||++.|.+.-
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4456789999999999999999998753
No 397
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.004 Score=48.93 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.+...-|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 345578999999999999999999873
No 398
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.0042 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..+..-|+|+|.+|+|||||++.|.+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 45568999999999999999999986
No 399
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0048 Score=51.23 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=27.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEE
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLV 80 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l 80 (303)
..++.++.++|++||||||++-.++..+.. ..+.++
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 456789999999999999999888877642 345554
No 400
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.08 E-value=0.0037 Score=50.94 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=22.7
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
......-|+|+|.+|+|||||++.|.+.
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3455678999999999999999999873
No 401
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.08 E-value=0.0032 Score=56.21 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.|+|+|.+|||||||++.|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999983
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.07 E-value=0.0038 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+..-|+|.|.+|+|||||++.|.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999863
No 403
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.07 E-value=0.0043 Score=49.53 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh
Confidence 34557899999999999999999986
No 404
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.01 Score=47.98 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEE
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLV 80 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l 80 (303)
..++.++.++|+.||||||.+-.++..+. ...+.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 45578999999999999999988888773 3345444
No 405
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.06 E-value=0.0066 Score=52.72 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~ 85 (303)
..++++|+|+|..|+||||++-.|+..|. ...+.+++.|.-
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45678999999999999999999988774 346899999963
No 406
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.06 E-value=0.0045 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
...-|+|.|.+|+|||||++.|.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 346799999999999999999875
No 407
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.06 E-value=0.0038 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+...|+|+|.+|+|||||++.|.+.
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999873
No 408
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.06 E-value=0.0045 Score=48.54 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999986
No 409
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.06 E-value=0.0054 Score=54.65 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~ 85 (303)
.+.++.++.|.|++||||||||..++..+. ...+.+++.+.-
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 356788999999999999999999987542 345788888643
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.05 E-value=0.0037 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.-|+|.|.+|||||||++.|.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999986
No 411
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.04 E-value=0.0047 Score=55.02 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
..+.-+.|.|++|+||||+++.++..++. .++.++...+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~-~~~~i~~~~l~ 154 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGA-TFFSISASSLT 154 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTC-EEEEEEGGGGC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC-eEEEEehHHhh
Confidence 34567899999999999999999998842 34556655444
No 412
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0053 Score=55.80 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+..+.=|.+.||+|+|||++|+++++.++. .++.++..++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~l~ 253 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSELI 253 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGGGC
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHHhh
Confidence 556677999999999999999999999853 34555555544
No 413
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.03 E-value=0.0037 Score=48.55 Aligned_cols=25 Identities=12% Similarity=0.330 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+..-|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999873
No 414
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.03 E-value=0.0038 Score=55.51 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
..+..+.|.|++|+||||+++.+++.+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34568999999999999999999999863
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.02 E-value=0.0038 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....|+|+|.+|||||||++.|.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999999975
No 416
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.00 E-value=0.0045 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.++++.|+|++|||||+++..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999886543
No 417
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.00 E-value=0.0041 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
...-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999986
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.99 E-value=0.0046 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhc
Confidence 34467899999999999999999987
No 419
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.98 E-value=0.0018 Score=60.79 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..++ +.+|+|+||||||||+.+|.-.+.
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 7777 999999999999999999988764
No 420
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.95 E-value=0.0054 Score=54.61 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
.+.-|.|.|++|+|||++|+.++..++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 344578899999999999999999985
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.94 E-value=0.0054 Score=48.88 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+...-|+|+|.+|+|||||++.|.+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHc
Confidence 34457899999999999999999986
No 422
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.94 E-value=0.0037 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
..+..+.|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999999877
No 423
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.94 E-value=0.0045 Score=52.48 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDS 84 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D~ 84 (303)
+.-+.|.|++|+|||++++.|+..+... .++.+++..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 3457799999999999999999987532 355565544
No 424
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.94 E-value=0.0082 Score=52.53 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~ 85 (303)
++..++|+|+|.-|.||||++--|+..|. ...+.+++.|..
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 66778999999999999999999988774 356899999953
No 425
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.93 E-value=0.0049 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.....-|+|.|.+|+|||||++.|.+.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 345578999999999999999999873
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.92 E-value=0.0042 Score=52.52 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
......|+|+|.+|||||||.+.|.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999986
No 427
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.92 E-value=0.0039 Score=49.65 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....|+|.|.+|||||||++.|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999976
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0039 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....-|+|+|.+|+|||||++.|.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3456899999999999999999987
No 429
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.91 E-value=0.0041 Score=54.15 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS 84 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~ 84 (303)
.+.-|.|+|+||+||||+|-.|..+ |..++..|.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~----G~~lv~DD~ 179 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK----NHLFVGDDA 179 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT----TCEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc----CCEEEeCCE
Confidence 4677999999999999999998763 555666554
No 430
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.90 E-value=0.005 Score=48.48 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|+|||||.+.+..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999986
No 431
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0063 Score=48.71 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....-|+|.|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4557899999999999999999987
No 432
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.89 E-value=0.0064 Score=48.97 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|||||||++.|.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999986
No 433
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.87 E-value=0.006 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
+..-|+|.|.+|+|||||++.|.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999986
No 434
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.0058 Score=57.30 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=27.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
.+..+.|.|++|+||||+++.+++.++ ..++.++..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~-~~~i~in~s 111 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQNAS 111 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeCC
Confidence 346889999999999999999999983 123444443
No 435
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0036 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
++...|+|.|++|||||||.+.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999988863
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.86 E-value=0.0053 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc
Confidence 34457899999999999999999975
No 437
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.0046 Score=56.82 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
+.-+.|.|++|+|||||++.+++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999876
No 438
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.86 E-value=0.0051 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~ 71 (303)
-|+|.|.+|+|||||++.|.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999763
No 439
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.85 E-value=0.0054 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....|+|.|.+|+|||||.+.|.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999999875
No 440
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.84 E-value=0.0085 Score=50.78 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~~~ 86 (303)
+++|+|.|..|+||||++-.|+..|.. ..+.+++.|.-.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 368888999999999999999998853 468899998543
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0068 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999987
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.84 E-value=0.005 Score=51.35 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH--hC-CCCEEEEeCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ--LH-DQRVVLVNQD 83 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~--l~-~~~~~~l~~D 83 (303)
.+.++.++.|+|++|+||||+|..++.. .. ...+.+++.+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3667889999999999999999877532 22 3356677765
No 443
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.83 E-value=0.0056 Score=48.13 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....-|+|+|.+|+|||||++.|.+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3456899999999999999999986
No 444
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.82 E-value=0.0047 Score=55.35 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D 83 (303)
+.-+.+.|++|+||||+|+.|++.++. .++.++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~~~ 106 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI-PIAISDAT 106 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC-CEEEecch
Confidence 446889999999999999999999843 34555543
No 445
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.82 E-value=0.0043 Score=55.93 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCC--CEEEEeCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQD 83 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~~--~~~~l~~D 83 (303)
.-++|+|++||||||+++.|...+... .+.+++.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357899999999999999998765432 34555543
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.81 E-value=0.006 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|.|.+|+|||||++.+.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999987
No 447
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0053 Score=54.80 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
..+..+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.79 E-value=0.0064 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.-|+|.|.+|+|||||++.|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 449
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.79 E-value=0.0048 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
......|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34557899999999999999999854
No 450
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0046 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
+...|+|+|.+|+|||||++.|.+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999873
No 451
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.78 E-value=0.0045 Score=47.94 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.-|+|.|.+|+|||||++.|.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999998854
No 452
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.77 E-value=0.0057 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhh
Confidence 44567899999999999999999976
No 453
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.77 E-value=0.0064 Score=48.47 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.++..-|+|+|.+|+|||||++.|.+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHc
Confidence 34567899999999999999999986
No 454
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.77 E-value=0.0038 Score=54.65 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.4
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQD 83 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D 83 (303)
.++.+...+.++.++.|+|++|+|||||+..++.... ...+.+++.+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3444445588899999999999999999999986542 2346777765
No 455
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.76 E-value=0.0049 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..++-.|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 455679999999999999999999863
No 456
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0055 Score=49.04 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+..-|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 4457899999999999999999986
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.75 E-value=0.006 Score=49.32 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.....-|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC
Confidence 344578999999999999999999873
No 458
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.74 E-value=0.0069 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
++...|+|.|.+|+|||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4668899999999999999999875
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.74 E-value=0.0064 Score=49.03 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.+..-|+|+|.+|+|||||++.|.+.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45678999999999999999999873
No 460
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.73 E-value=0.0085 Score=52.92 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=34.8
Q ss_pred ccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCC
Q 022073 38 ISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQD 83 (303)
Q Consensus 38 ~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D 83 (303)
++.....+.++.++.|+|++|+|||||+..++.... ...+.+++.+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 333344588889999999999999999999987642 3346677765
No 461
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.73 E-value=0.0066 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999986
No 462
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.71 E-value=0.0055 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
...|+|+|.+|+|||||.+.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999873
No 463
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.71 E-value=0.0082 Score=48.74 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.7
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|.|.+|+|||||++.|..
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhc
Confidence 34557899999999999999999986
No 464
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.71 E-value=0.0073 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..-|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999986
No 465
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0073 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
++...|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999999985
No 466
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.67 E-value=0.011 Score=50.68 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=32.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~~ 86 (303)
+++|+|.|.-|+||||++-.|+..|. ...+.+++.|.-.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 46888899999999999999998874 3468999999643
No 467
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.67 E-value=0.0073 Score=48.09 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
....-|+|.|.+|+|||||++.|.+.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999888765
No 468
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.66 E-value=0.0085 Score=53.96 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~~ 86 (303)
+.-+.|.|++|+|||++++.++..++. .++.++...+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~-~~~~v~~~~l~ 185 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA-TFFNISAASLT 185 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC-EEEEECSCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC-cEEEeeHHHhh
Confidence 467899999999999999999998852 34555555443
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.65 E-value=0.0064 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+...|+|.|.+|+|||||++.|.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999987
No 470
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.63 E-value=0.0044 Score=49.18 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q 022073 50 VIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~ 70 (303)
-|+|+|.+|+|||||++.|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 471
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.62 E-value=0.0068 Score=55.59 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
....|+|+|++|+|||||.+.|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999999998753
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.62 E-value=0.0072 Score=52.72 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+.-+.|.|++|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999998764
No 473
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.60 E-value=0.0063 Score=47.96 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 47 QPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 47 ~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
+...|+|.|.+|+|||||++.|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 356899999999999999999985
No 474
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.60 E-value=0.0078 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
......|+|+|.+|+|||||++.|.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45567899999999999999999865
No 475
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.58 E-value=0.0087 Score=55.16 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCC-CEEEEeCCCC
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~l~~~-~~~~l~~D~~ 85 (303)
..+.-+.+.||+|+|||++|+.+++.++.. .+..++...+
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 344568899999999999999999998621 3444554433
No 476
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.57 E-value=0.0079 Score=49.68 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+...|+|+|.+|+|||||++.|.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999999976
No 477
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.55 E-value=0.0095 Score=49.66 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=30.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC--CCEEEEeCCC
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l~~--~~~~~l~~D~ 84 (303)
.|+|.|..|+||||++-.|+..+.. ..+.+++.|.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3777999999999999999998864 4688999986
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.55 E-value=0.0077 Score=53.93 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+.+|+|+|||||||+..+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 479
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0094 Score=48.27 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....-|+|+|.+|+|||||++.|.+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999986
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.54 E-value=0.0032 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 022073 50 VIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 50 iI~I~G~~GSGKSTla~~L~~~l 72 (303)
-|.|.|++|+|||++|+.+....
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 47799999999999999998765
No 481
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.54 E-value=0.0082 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
....-|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999873
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.54 E-value=0.0048 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=11.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp SEEEEEEEECCCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999999875
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.54 E-value=0.0076 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
..+.|.|++|+||||+++.|++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999885
No 484
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.53 E-value=0.0077 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
....-|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999975
No 485
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.51 E-value=0.013 Score=53.88 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=36.2
Q ss_pred CccccccCCCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CCCEEEEeCC
Q 022073 37 TISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVLVNQD 83 (303)
Q Consensus 37 ~~~~~~~~~~~~~iI~I~G~~GSGKSTla~~L~~~l~---~~~~~~l~~D 83 (303)
.++.....+.++.++.|+|++|+|||||+..++.... ...+.+++.+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3344445588899999999999999999999987543 2357777775
No 486
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.51 E-value=0.045 Score=53.44 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=45.0
Q ss_pred CCCcEEEEeccccccchhhh--hhcCeEEEEecChHHHHHHHHhhCccccCCCHHHHHHHHhhccccchhhccccccccc
Q 022073 147 NPSDVILLEGILVFHDSRVR--ELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 224 (303)
Q Consensus 147 ~~~~vvildg~~~~~d~~~~--~~~d~~I~v~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~a 224 (303)
.....+|+|.-..+. ..+. ..+-+.|||..+....++++..|.. + ..+...+.+..+.+. .+....
T Consensus 618 ~~g~~~ildi~~~~~-~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t-~--~~~~~rl~~a~~~e~--------~~~~~f 685 (721)
T 2xkx_A 618 EQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKRIT-E--EQARKAFDRATKLEQ--------EFTECF 685 (721)
T ss_pred HCCCcEEEeCCHHHH-HHHHhcccCCEEEEEeCCcHHHHHHHhccCC-H--HHHHHHHHHHHHHHH--------hccccC
Confidence 456678888644332 1122 3445899999988777777544431 1 111222222211010 113467
Q ss_pred cEEecCCCCCHHHHHHHHHHHH
Q 022073 225 DIIIPRGGDNHVAIDLIVQHIR 246 (303)
Q Consensus 225 D~iI~~~~~~~~~~~~~v~~i~ 246 (303)
|++|.|+ +-+.+++.+.+.|.
T Consensus 686 d~vi~Nd-~l~~a~~~l~~~i~ 706 (721)
T 2xkx_A 686 SAIVEGD-SFEEIYHKVKRVIE 706 (721)
T ss_pred cEEEECc-CHHHHHHHHHHHHH
Confidence 8888877 44455555555443
No 487
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.50 E-value=0.011 Score=52.96 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CCCEEEEeCCCC
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSF 85 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~l~--~~~~~~l~~D~~ 85 (303)
.+.++.++.|.|++|||||||+..++.... ...+.+++.+.-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 356788999999999999999998877542 346888888753
No 488
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.0066 Score=53.15 Aligned_cols=28 Identities=25% Similarity=0.118 Sum_probs=25.2
Q ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 44 ~~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.+.++.++.|.|++||||||++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3667899999999999999999999875
No 489
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.48 E-value=0.0052 Score=53.54 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeCCCC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSF 85 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~D~~ 85 (303)
+..+.|.|++|+||||+++.++..++. .+..++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV-NLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC-CEEEEecccc
Confidence 456889999999999999999998853 3455555443
No 490
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.46 E-value=0.0092 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
..+..-|+|+|.+|+|||||++.|..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999854
No 491
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.46 E-value=0.0082 Score=53.31 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 48 ~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
+..+.|.|++|+||||+++.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34788999999999999999999885
No 492
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.45 E-value=0.0051 Score=49.45 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
.++..-|.|.|.+|+|||||++.+.+.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 455678999999999999999977653
No 493
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.44 E-value=0.014 Score=50.98 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC----CCCEEEEeCCCCC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFY 86 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~----~~~~~~l~~D~~~ 86 (303)
+.++ ++.|.|++|||||||+-.++.... ...+.+++...-.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 5667 899999999999999887765442 2346788876433
No 494
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0074 Score=52.84 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~ 73 (303)
...+..+.|.|++|+|||++++.+++.+.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999884
No 495
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.42 E-value=0.0094 Score=52.25 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 022073 49 FVIGVAGGAASGKTTVCDMIIQQLHD 74 (303)
Q Consensus 49 ~iI~I~G~~GSGKSTla~~L~~~l~~ 74 (303)
.-+.+.|++|+|||++++.|++.++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35889999999999999999998854
No 496
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.42 E-value=0.0099 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~ 71 (303)
..++.++.|.|++|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 445678899999999999999999876
No 497
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.40 E-value=0.01 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.+...|+|+|.+|+|||||++.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999986
No 498
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.40 E-value=0.01 Score=58.34 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHhCCCCEEEEeC
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l~~~~~~~l~~ 82 (303)
...+.=|.+.||+|+|||+|++.+++.++. .++.++.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~-~~~~v~~ 271 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA-FFFLING 271 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTC-EEEEEEH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCC-eEEEEEh
Confidence 556778999999999999999999998842 2344444
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.40 E-value=0.0047 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Q 022073 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (303)
Q Consensus 46 ~~~~iI~I~G~~GSGKSTla~~L~~ 70 (303)
.....|+|+|.+|||||||++.|.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3456899999999999999999876
No 500
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.39 E-value=0.01 Score=52.96 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 022073 45 HRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (303)
Q Consensus 45 ~~~~~iI~I~G~~GSGKSTla~~L~~~l 72 (303)
.++...|.|.|.+||||||+++.+.-..
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 3557889999999999999999995444
Done!