BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022074
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 187
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 242 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 267
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 268 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 274 GD 275
D
Sbjct: 325 ND 326
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 39 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 93
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 123
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 124 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 38 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 95 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 147 GKDQAIKLWDIR 158
D+++++WD++
Sbjct: 150 SFDESVRIWDVK 161
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 185
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 240 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 265
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 266 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 274 GD 275
D
Sbjct: 323 ND 324
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 37 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 91
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 121
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 122 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 36 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 92
Query: 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 93 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 147 GKDQAIKLWDIR 158
D+++++WD++
Sbjct: 148 SFDESVRIWDVK 159
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 169
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 224 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 249
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 250 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 274 GD 275
D
Sbjct: 307 ND 308
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 168
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 223 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 248
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 249 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 274 GD 275
D
Sbjct: 306 ND 307
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 20 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 74
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 104
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 105 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 169
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 224 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 249
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 250 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 274 GD 275
D
Sbjct: 307 ND 308
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 163
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 218 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 243
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 244 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 274 GD 275
D
Sbjct: 301 ND 302
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 15 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 14 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 71 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 147 GKDQAIKLWDIR 158
D+++++WD++
Sbjct: 126 SFDESVRIWDVK 137
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 159
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 214 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 239
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 240 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 274 GD 275
D
Sbjct: 297 ND 298
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 11 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 65
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 95
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 96 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 10 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 67 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 147 GKDQAIKLWDIR 158
D+++++WD++
Sbjct: 122 SFDESVRIWDVK 133
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 163
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 218 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 243
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 244 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 274 GD 275
D
Sbjct: 301 ND 302
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 15 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 69
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 99
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 100 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 162
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 217 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 242
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 243 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 274 GD 275
D
Sbjct: 300 ND 301
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 14 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 68
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 98
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 99 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 169
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 224 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 249
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 250 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 274 GD 275
D
Sbjct: 307 ND 308
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 21 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 75
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 105
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 106 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 164
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 219 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 244
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 245 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 274 GD 275
D
Sbjct: 302 ND 303
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 16 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 70
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 100
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 101 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 180
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 235 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 260
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 261 FS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 274 GD 275
D
Sbjct: 318 ND 319
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 32 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 86
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 116
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 117 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86
L F+ A G++ + S+KFS +G L + S+D I ++ K I H ++
Sbjct: 31 ALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
V + +S +L+ S SDD K+WD GK L GH + + ++S
Sbjct: 88 VAWSSDS-NLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 147 GKDQAIKLWDIR 158
D+++++WD++
Sbjct: 143 SFDESVRIWDVK 154
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 166
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 221 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 246
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 247 FSV---TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 274 GD 275
D
Sbjct: 304 ND 305
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + + S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGA----YDGKFEKTISGHKLGIS 72
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 166
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 221 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 246
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 247 FSV---TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 274 GD 275
D
Sbjct: 304 ND 305
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 72
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ K + AH+ V+ V F + G L
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSL 166
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 221 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 246
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 247 FSV---TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 274 GD 275
D
Sbjct: 304 ND 305
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGA----YDGKFEKTISGHKLGIS 72
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G+ + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 17/248 (6%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+ GI + +S+D LV+ S D + ++D+ + K + H++ V F +S +L
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
I SGS D ++WD + G L H + ++ + DG ++S+ D ++WD
Sbjct: 125 IVSGSFDESVRIWDVK----TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 157 ------IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK---HPCDQSVATYKGHSVLR 207
++ + + + + F + + +++ DLK + + + TY GH +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Query: 208 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267
I +FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++
Sbjct: 241 YCIFANFS---VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 268 VSSSWDGD 275
S++ + D
Sbjct: 298 ASAALEND 305
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 47/242 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S +F F+ +V+GS D+ + ++D++ + AH+ V+ V F + G L
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSL 166
Query: 97 IYSGSDDNLCKVWDR---RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
I S S D LC++WD +CL ++ ++F+ +G+Y+++ D +K
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKT------LIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213
LWD K + + TY GH + I +
Sbjct: 221 LWDYSK----------------------------------GKCLKTYTGHKNEKYCIFAN 246
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FS TG K+I +GS D+ VY+++L + E V L+ HT V + HP++ ++ S++ +
Sbjct: 247 FS---VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 274 GD 275
D
Sbjct: 304 ND 305
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 45/208 (21%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V++V F +G + S S D L K+W GK + GH GI+
Sbjct: 18 LMFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGIS 72
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ D L+S D+ +K+WD+ S+ C
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDV----SSGKC-------------------------- 102
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ T KGHS + C+F+P I +GS D V ++D+ +G + L H+
Sbjct: 103 ----LKTLKGHS--NYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
PV ++ ++VSSS+DG W+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
L+ S SDD K+WD GK L GH + + ++S D+++++W
Sbjct: 82 LLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 156 DIR 158
D++
Sbjct: 138 DVK 140
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 114/263 (43%), Gaps = 40/263 (15%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S ++ + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 235
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
I S SDD K+W+R G+ L GH + + R DG+ + S D+ +KLW+
Sbjct: 236 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 157 -----IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD-----------QSVATY 200
++ ++ ++S G + + P + + D Q + T
Sbjct: 291 RNGQLLQTLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340
Query: 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260
GHS ++ FSP T I + S D V +++ +G+ + L H+S VR ++
Sbjct: 341 TGHS--SSVWGVAFSPDGQT----IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 393
Query: 261 HPSQPMLVSSSWDGDVVRWEFPG 283
P + S+S D V W G
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNG 416
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 28/257 (10%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S ++ + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 112
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
I S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 113 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 157 -----IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLI 210
++ ++ ++S G + + P + + D++V + + L +
Sbjct: 168 RNGQLLQTLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 211 RCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266
H S V +S + I + S D V +++ +G+ + L H+S V ++ P
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 267 LVSSSWDGDVVRWEFPG 283
+ S+S D V W G
Sbjct: 277 IASASDDKTVKLWNRNG 293
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 28/256 (10%)
Query: 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 97
+S + + FS DG+ + + S D + +++ L + H+S V V F + G I
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPD-GQTI 72
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD- 156
S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 73 ASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 157 ----IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLIR 211
++ ++ ++S G + + P + + D++V + + L +
Sbjct: 128 NGQLLQTLTGHSSSVWG----------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177
Query: 212 CHFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267
H S V +S + I + S D V +++ +G+ + L H+S VR ++ P +
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 268 VSSSWDGDVVRWEFPG 283
S+S D V W G
Sbjct: 237 ASASDDKTVKLWNRNG 252
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 522
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
I S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 523 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + FS DG+ + + S D + +++ L + H+S V V F +
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDD-QT 440
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
I S SDD K+W+R G+ L GH + + DG+ + S D+ +KLW+
Sbjct: 441 IASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLIRCHFS 215
N + R + + P + + D++V + + L + H S
Sbjct: 496 -----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Query: 216 PV----YSTGQKYIYTGSHDSCVYVYD 238
V +S + I + S D V +++
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I S+ FS DG+ L G+ D I ++D+E K+ + + H D+ ++ + SG + SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGS 184
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWD---- 156
D ++WD R + + +G+T + S GDG+Y+ + D+A+++WD
Sbjct: 185 GDRTVRIWDLRT-----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 157 --IRKMSSNASCNLGFRSYEWDYRW-----------MDYPPQARDLKHPCDQSVATYKGH 203
+ ++ S G + + + +D + +L++ ++S +
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 204 SVLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
H S + +YI +GS D V +D SG + L+ H + V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---- 78
E+H LD ++ + +KFS DG L G + VY + L R+
Sbjct: 56 ELHKSLDHTSV--------VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 106
Query: 79 ------------AHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 124
+ +SD + +VCF + G + +G++D L ++WD K +L
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIE----NRKIVMIL 161
Query: 125 MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
GH + I +D G L+S D+ +++WD+R
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 10 VGSGTMESLANVTEIHDG-----LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 64
+ +G+++ V + G LD G+ ++S+ F+ DG+ +V+GS D +
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 65 VYDLE-ANKLS-----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112
+++L+ AN S + + H V +V ++ I SGS D WD++
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKK 340
Query: 113 CLNVKGKPAGVLMGHLEGITFI-----DSRGDGRYLISNGK-DQAIKLWDIRKMSSN 163
G P +L GH + + S G + + G D ++W +K++ N
Sbjct: 341 S----GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277
+S K++ TG+ D + ++D+ + + V L+ H + + PS LVS S D V
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 278 RWEF 281
W+
Sbjct: 191 IWDL 194
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 42/278 (15%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
IF FS +V+ S D I V+D E + HT V + F D SG L+ S S
Sbjct: 115 IFHPVFSV----MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCS 169
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161
D K+WD + + GH ++ + +G +++S +D+ IK+W+++
Sbjct: 170 ADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--- 222
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQS-----VATYKGHSVLRT---LIR 211
C F + ++ M P Q L C DQ+ VAT + + LR ++
Sbjct: 223 -TGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 212 C--------HFSPVYSTGQK---------YIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
C + S +TG + ++ +GS D + ++D+ +G + L H +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 292
VR +H ++S + D + W++ N LN
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLN 377
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/270 (19%), Positives = 105/270 (38%), Gaps = 35/270 (12%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ + + F G+ L + S+D I ++D + + + H +V++V H+
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ S S D K+W+ + G GH E + + DG + S DQ +++W
Sbjct: 208 V-SASRDKTIKMWEVQT----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQAR---------------------DLKHPCDQ 195
+ + C R + + + P++ L D+
Sbjct: 263 V----ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 196 SVATYKGHS--VLRTLI---RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250
++ + + L TL+ ++ +G K+I + + D + V+D + + L
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
H V +H + P +V+ S D V WE
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 110
L++GS D I ++D+ + ++ H + V V F G I S +DD +VWD
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKFILSCADDKTLRVWDYKN 369
Query: 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
+RC+ L H +T +D Y+++ DQ +K+W+ R
Sbjct: 370 KRCMKT-------LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244
Q RD K + Y + R F PV+S + + S D+ + V+D +G+
Sbjct: 87 QKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSV----MVSASEDATIKVWDYETGDF 142
Query: 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283
LK HT V+D S+ S +L S S D + W+F G
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 27/195 (13%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
H S V V F ++ S S+D KVWD G L GH + + I
Sbjct: 107 HRSPVTRVIFHPVFSVMV-SASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHS 161
Query: 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA---------RDLK 190
G+ L S D IKLWD + C ++ + + P + +K
Sbjct: 162 GKLLASCSADMTIKLWDFQGF----ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 191 HPCDQS---VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247
Q+ V T+ GH ++R + I + S+D V V+ + + E A
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRP------NQDGTLIASCSNDQTVRVWVVATKECKAE 271
Query: 248 LKYHTSPVRDCSWHP 262
L+ H V SW P
Sbjct: 272 LREHRHVVECISWAP 286
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+ + + F + G+ +++ + D + V+D + + + AH V ++ F + ++
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395
Query: 97 IYSGSDDNLCKVWDRR 112
+ +GS D KVW+ R
Sbjct: 396 V-TGSVDQTVKVWECR 410
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 15/205 (7%)
Query: 79 AHTSDVNTVCFG---DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 135
AH + +V +G E+ + +GS D+L KVW R + + + L GH G+ +D
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--LEGHQLGVVSVD 87
Query: 136 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195
S+ D I+LWD+ S + G D + + P ++ L
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG----PVDAWTLAFSPDSQYLATGTHV 143
Query: 196 S------VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249
V + K L T + S YS KY+ +G+ D + ++D+ +G+ + L+
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 250 YHTSPVRDCSWHPSQPMLVSSSWDG 274
H P+R ++ P +LV++S DG
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDG 228
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I S+ +S DG+ L +G+ D I ++D+ KL + H + ++ F +S L+ + S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTAS 225
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH 127
DD K++D + N+ AG L GH
Sbjct: 226 DDGYIKIYDVQHANL----AGTLSGH 247
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 69
+ SG ++ + N+ +I G + G++ I SL FS D + LV S D I +YD++
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 70 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD---RRCLNVKGKPAGVLMG 126
L+ + H S V V F + H + S S D KVWD R C++
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGTRTCVH-------TFFD 288
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H + + + G+G ++S G DQ I ++D
Sbjct: 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 70
S ++++ + ++ +G + D G ++L FS D + L G+ + ++ +E+
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAG--PVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 71 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130
K + + ++ + + G + SG+ D + ++D GK L GH
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIAT----GKLLHTLEGHAMP 208
Query: 131 ITFIDSRGDGRYLISNGKDQAIKLWDIR 158
I + D + L++ D IK++D++
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 51/256 (19%)
Query: 10 VGSGTMESLANVTEIHDG-LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 68
V +G+++ L V + D LD + +G + G+ S+ S + S D I ++DL
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109
Query: 69 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGH 127
E K I A D T+ F +S +L + ++ KV V+ GK L
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYL---ATGTHVGKV---NIFGVESGKKEYSLDTR 163
Query: 128 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187
+ I I DG+YL S D I ++DI A+ L
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDI------ATGKL------------------- 198
Query: 188 DLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246
+ T +GH++ +R+L FSP + + T S D + +YD+
Sbjct: 199 ---------LHTLEGHAMPIRSLT---FSP----DSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 247 ALKYHTSPVRDCSWHP 262
L H S V + ++ P
Sbjct: 243 TLSGHASWVLNVAFCP 258
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 28 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 87
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 658 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 88 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 147 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 197
D ++LWD+R + S N+ F S E PP+ ++ C D+ +
Sbjct: 769 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 821
Query: 198 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
K +L T+ C FSP CV ++++
Sbjct: 822 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 877
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
S +VA + H S V + P +++S D + WE
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 75 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 134
L + HT V CF + + G+D L +V+ G+ + H + +
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 670
Query: 135 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194
D Y+ + D+ +K+WD +A+ L
Sbjct: 671 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 698
Query: 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
V TY HS + CHF+ + + TGS+D + ++DL E + HT+
Sbjct: 699 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 752
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 303
V C + P +L S S DG + W+ E +K I ++F+L
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 795
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDN 104
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 813 WSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAVIALSQY 869
Query: 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +K+ N+
Sbjct: 870 CVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 925
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYST 220
+ L E D + + + + + K + + C SP
Sbjct: 926 AIVL---KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP---- 978
Query: 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
+Y+ G D + + +L + ++ H VR + L+SSS D + W
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Query: 281 F 281
+
Sbjct: 1039 W 1039
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 28 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 87
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 651 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 88 CFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 146
F ++S HL+ +GS+D K+WD LN K + + GH + D L S
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 147 GKDQAIKLWDIRKMSSNASCNLG--FRSYEWDYRWMDYPPQARDLKHPC-------DQSV 197
D ++LWD+R + S N+ F S E PP+ ++ C D+ +
Sbjct: 762 SADGTLRLWDVRSANERKSINVKRFFLSSE-------DPPEDVEVIVKCCSWSADGDKII 814
Query: 198 ATYKGHSVL-----------------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
K +L T+ C FSP CV ++++
Sbjct: 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY----DHLAVIALSQYCVELWNID 870
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
S +VA + H S V + P +++S D + WE
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 75 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 134
L + HT V CF + + G+D L +V+ G+ + H + +
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTL-QVFKAE----TGEKLLDIKAHEDEVLCC 663
Query: 135 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194
D Y+ + D+ +K+WD +A+ L
Sbjct: 664 AFSSDDSYIATCSADKKVKIWD------SATGKL-------------------------- 691
Query: 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
V TY HS + CHF+ + + TGS+D + ++DL E + HT+
Sbjct: 692 --VHTYDEHS--EQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 303
V C + P +L S S DG + W+ E +K I ++F+L
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANE------RKSINVKRFFL 788
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/241 (19%), Positives = 97/241 (40%), Gaps = 20/241 (8%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDN 104
+S DG +++ + + + ++D+ + L I HT +T+ + D S HL
Sbjct: 806 WSADGDKIIVAAKNK-VLLFDIHTSGLLAEI--HTGHHSTIQYCDFSPYDHLAVIALSQY 862
Query: 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
++W+ ++ + K A GHL + + DG ++ DQ I++W+ +K+ N+
Sbjct: 863 CVELWN---IDSRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYST 220
+ L E D + + + + + K + + C SP
Sbjct: 919 AIVL---KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP---- 971
Query: 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
+Y+ G D + + +L + ++ H VR + L+SSS D + W
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Query: 281 F 281
+
Sbjct: 1032 W 1032
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 43/257 (16%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113
++ G+ D I VYD K L++ H V + + G ++ SGS D +VWD +
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 114 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171
KG V GH + +D + +Y+++ +D + +W + K SS
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 172 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 213
E DY + + P+ + SV T GH + TLI +C
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 303
Query: 214 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ S +Y +K + S D+ + ++DL +GE + L+ HT+ V S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV--GLLRLS 361
Query: 264 QPMLVSSSWDGDVVRWE 280
LVS++ DG + W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 48 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107
S G +V+GS D+ + V+D+ K + HT + + + E I S S D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIR 335
Query: 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+WD G+ L GH + + R ++L+S D +I+ WD
Sbjct: 336 IWDLE----NGELMYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWD 378
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 207 RTLIRCHFSPVYSTGQ---KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
RT +R H + V + Q Y+ TG+ D + VYD ++ + + L H V +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 264 QPMLVSSSWDGDVVRWEF 281
+LVS S D V W+
Sbjct: 173 GGILVSGSTDRTVRVWDI 190
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ I+S + + + ++ S D I ++DLE +L + HT+ V + D+
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---F 364
Query: 97 IYSGSDDNLCKVWD 110
+ S + D + WD
Sbjct: 365 LVSAAADGSIRGWD 378
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 49/283 (17%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ + L++ D R ++ GSSD + V+D+ ++ ++ H V + F + +
Sbjct: 171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAG-----VLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ + S D VWD P VL+GH + +D D +Y++S D+
Sbjct: 226 MVTCSKDRSIAVWD------MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277
Query: 152 IKLWDIRKMSSNASCN---LGFRSYEWDYRWM-----DYPPQARDLKHPCDQSVATYKGH 203
IK+W+ + N G ++ R + D + D++ C + +GH
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--CGACLRVLEGH 335
Query: 204 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA---------LKYHTSP 254
L+RC K I +G++D + V+DLV+ A L H+
Sbjct: 336 E---ELVRC-----IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGN--GEAAPPLNKKR 295
V + Q +VSSS D ++ W+F + +A PP + R
Sbjct: 388 VFRLQFDEFQ--IVSSSHDDTILIWDFLNDPAAQAEPPRSPSR 428
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 120/265 (45%), Gaps = 38/265 (14%)
Query: 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98
S G++ L++ D +++V+G D+ I ++D + + HT V + + + +I
Sbjct: 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER---VII 187
Query: 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
+GS D+ +VWD +N G+ L+ H E + + R + +++ KD++I +WD
Sbjct: 188 TGSSDSTVRVWD---VNT-GEMLNTLIHHCEAVLHL--RFNNGMMVTCSKDRSIAVWD-- 239
Query: 159 KMSSNASCNL-----GFRS----YEWDYRWMDYPPQARDLK----HPCDQSVATYKGHSV 205
M+S L G R+ ++D +++ R +K C + V T GH
Sbjct: 240 -MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-EFVRTLNGH-- 295
Query: 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265
+ I C + + +GS D+ + ++D+ G + L+ H VR + +
Sbjct: 296 -KRGIAC-----LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR- 348
Query: 266 MLVSSSWDGDVVRWEFPGNGEAAPP 290
+VS ++DG + W+ + P
Sbjct: 349 -IVSGAYDGKIKVWDLVAALDPRAP 372
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113
++ G+ D I VYD K L++ H V + + G ++ SGS D +VWD +
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK- 191
Query: 114 LNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171
KG V GH + +D + +Y+++ +D + +W + K SS
Sbjct: 192 ---KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-----H 243
Query: 172 SYEWDYRWMDYPPQAR----DLKHPCDQSVATYKGHSVL-------RTLI-------RCH 213
E DY + + P+ + SV T GH + TLI +C
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCL 303
Query: 214 F----------SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ S +Y +K + S D+ + ++DL +GE L+ HT+ V S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV--GLLRLS 361
Query: 264 QPMLVSSSWDGDVVRWE 280
LVS++ DG + W+
Sbjct: 362 DKFLVSAAADGSIRGWD 378
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 48 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107
S G +V+GS D+ + V+D+ K + HT + + + E I S S D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIR 335
Query: 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165
+WD G+ L GH + + R ++L+S D +I+ WD S S
Sbjct: 336 IWDLE----NGELXYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFS 387
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ I+S + + + ++ S D I ++DLE +L + HT+ V + D+
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---F 364
Query: 97 IYSGSDDNLCKVWD 110
+ S + D + WD
Sbjct: 365 LVSAAADGSIRGWD 378
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 207 RTLIRCHFSPVYSTGQ---KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
RT +R H + V + Q Y+ TG+ D + VYD ++ + + L H V +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 264 QPMLVSSSWDGDVVRWEF 281
+LVS S D V W+
Sbjct: 173 GGILVSGSTDRTVRVWDI 190
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 31/257 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDESGHL 96
+ + ++ G + G D+ VY L +K + +A ++ + C S
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID--SRGDGRYLISNGKDQAIKL 154
I + S D C +WD G+ GH + +D G +S G D+ +
Sbjct: 169 ILTASGDGTCALWDVE----SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKG 202
WD+R + C F ++E D + Y P R D+ VA Y
Sbjct: 225 WDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262
S++ FS + ++ G +D + V+D++ G +V+ L H + V P
Sbjct: 281 ESIIFGASSVDFS----LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
Query: 263 SQPMLVSSSWDGDVVRW 279
S SWD + W
Sbjct: 337 DGTAFCSGSWDHTLRVW 353
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 91/258 (35%), Gaps = 49/258 (18%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 95
G+ + + + D R +V+ S D + V+D NK + T + C SG
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM--ACAYAPSGC 119
Query: 96 LIYSGSDDNLCKVW-----DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 150
I G DN C V+ + K K + +L +F +S D + L ++G D
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASG-DG 176
Query: 151 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210
LWD+ S F + D +D P
Sbjct: 177 TCALWDVESGQLLQS----FHGHGADVLCLDLAPS------------------------- 207
Query: 211 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270
TG ++ +G D V+D+ SG+ V A + H S V ++PS S
Sbjct: 208 --------ETGNTFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 258
Query: 271 SWDGDVVRWEFPGNGEAA 288
S D ++ + E A
Sbjct: 259 SDDATCRLYDLRADREVA 276
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 40 FGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIY 98
FG S+ FS GR L AG +D I V+D L+ +++S+ + H + V+T+ + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 99 SGSDDNLCKVW 109
SGS D+ +VW
Sbjct: 343 SGSWDHTLRVW 353
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE-FPGNGEAAPPL 291
LK H + V W + +VSSS DG V+ W+ F N E A +
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM 104
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 40/253 (15%)
Query: 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 133
++++ H + V + E G L++S S D+ VW ++ G+ G L GH I
Sbjct: 25 AIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVW----YSLNGERLGTLDGHTGTIWS 79
Query: 134 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------- 186
ID +Y ++ D +IKLWD+ SN C ++S + +++ P
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDV----SNGQCVATWKS-PVPVKRVEFSPCGNYFLAIL 134
Query: 187 -RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY----------------STGQKYIYTGS 229
+K+P ++ + S L + P++ ST KYI G
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Query: 230 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPG 283
D + YD+ + E V ++ H + D + P ++SS D DV +
Sbjct: 195 KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254
Query: 284 NGEAAPPLNKKRI 296
E PLN I
Sbjct: 255 KYETDCPLNTAVI 267
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 115
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 116 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 171 MVKAWNLNQFQIEA 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 157
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D + K W+ ++ +GH I + + DG + S GKD
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 213
Query: 152 IKLWDI 157
I LW++
Sbjct: 214 IMLWNL 219
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 22/219 (10%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRG 138
H V ++ +L+ S S D W + K G P GH +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 139 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD--- 188
DG Y +S D+ ++LWD+ + F ++ D +D +A RD
Sbjct: 70 DGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 189 ----LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244
+K C +AT GH+ + +R + I + +D V ++L +
Sbjct: 126 KVWTIKGQC---LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283
A H S + + P ++ S+ DG+++ W
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 163
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D + K W+ ++ +GH I + + DG + S GKD
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 152 IKLWDI 157
I LW++
Sbjct: 220 IMLWNL 225
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 22/219 (10%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRG 138
H V ++ +L+ S S D W + K G P GH +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 139 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD--- 188
DG Y +S D+ ++LWD+ + F ++ D +D +A RD
Sbjct: 76 DGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 189 ----LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244
+K C +AT GH+ + +R + I + +D V ++L +
Sbjct: 132 KVWTIKGQC---LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283
A H S + + P ++ S+ DG+++ W
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 163
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D + K W+ ++ +GH I + + DG + S GKD
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 152 IKLWDI 157
I LW++
Sbjct: 220 IMLWNL 225
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 95 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 199
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 260 WHPSQPMLVSSSWDGDVVRWEFPG 283
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 205 VLRTLIRCH----FSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSP 254
VLR + H S S GQ + + S D + + L +Q V + K H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWE 280
V+DC+ +S+SWD + W+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWD 93
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 163
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D + K W+ ++ +GH I + + DG + S GKD
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 152 IKLWDI 157
I LW++
Sbjct: 220 IMLWNL 225
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 95 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 199
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 260 WHPSQPMLVSSSWDGDVVRWEFPG 283
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 205 VLRTLIRCH----FSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSP 254
VLR + H S S GQ + + S D + + L +Q V + K H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWE 280
V+DC+ +S+SWD + W+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWD 93
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 177 MVKAWNLNQFQIEA 190
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 163
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D + K W+ ++ +GH I + + DG + S GKD
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 152 IKLWDI 157
I LW++
Sbjct: 220 IMLWNL 225
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 95 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 199
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---LAT 143
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 260 WHPSQPMLVSSSWDGDVVRWEFPG 283
P ++ S+ DG+++ W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAA 227
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 205 VLRTLIRCH----FSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSP 254
VLR + H S S GQ + + S D + + L +Q V + K H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWE 280
V+DC+ +S+SWD + W+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWD 93
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-DKKASX 121
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI------DSRGDGRYLISNGKDQ 150
I SGS D KVW +KG+ L+GH + ++ + + D +IS G D+
Sbjct: 122 IISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 151 AIKLWDIRKMSSNA 164
+K W++ + A
Sbjct: 177 XVKAWNLNQFQIEA 190
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-----GD 91
G+ + S+ +++GS D I V+ ++ L+ +L H V+ V D
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKAD 163
Query: 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151
+ I S +D K W+ ++ +GH I + + DG + S GKD
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEAD----FIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 152 IKLWDI 157
I LW++
Sbjct: 220 IXLWNL 225
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 22/204 (10%)
Query: 95 HLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+L+ S S D W + K G P GH + DG Y +S D+ ++
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-------RD-------LKHPCDQSVAT 199
LWD+ + F ++ D +D +A RD +K C +AT
Sbjct: 91 LWDV----ATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC---LAT 143
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
GH+ + +R + I + +D V ++L + A H S + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 260 WHPSQPMLVSSSWDGDVVRWEFPG 283
P ++ S+ DG++ W
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAA 227
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 205 VLRTLIRCH----FSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSP 254
VLR + H S S GQ + + S D + + L +Q V + K H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWE 280
V+DC+ +S+SWD + W+
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWD 93
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 95
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 96 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 155 WDIRK 159
WD+ +
Sbjct: 219 WDLNE 223
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 152
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 121 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 153 KLWDIRKMSSNASCNL 168
K+W++ A+C L
Sbjct: 175 KVWNL------ANCKL 184
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 22/227 (9%)
Query: 70 ANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMG 126
+++LR + H V + + +I S S D +W R G P L G
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--------CNLGFRSYEWDYR 178
H ++ + DG++ +S D ++LWD+ ++ ++ F S D R
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS---DNR 118
Query: 179 WMDYPPQARDLKHPCDQSVATY----KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234
+ + + +K V Y + HS + +R FSP ++ I + D V
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSP--NSSNPIIVSCGWDKLV 174
Query: 235 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
V++L + + HT + + P + S DG + W+
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
V S+ ++ +GS D + ++DL +G HT V ++ +VS S D +
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 277 VRWEFPG 283
W G
Sbjct: 130 KLWNTLG 136
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGH 95
G++ + S+ FS+D R++V+GS D I +++ L K +++ +H+ V+ V F S +
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 96 -LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154
+I S D L KVW+ +K +GH + + DG S GKD L
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 155 WDIRK 159
WD+ +
Sbjct: 242 WDLNE 246
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 152
+ SGS D K+W N G + H E ++ + ++S G D+ +
Sbjct: 144 V-SGSRDKTIKLW-----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 153 KLWDIRKMSSNASCNL 168
K+W++ A+C L
Sbjct: 198 KVWNL------ANCKL 207
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 16/231 (6%)
Query: 63 IYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGK 119
+Y + +++LR + H V + + +I S S D +W R G
Sbjct: 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI 77
Query: 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA-----SCNLGFRSYE 174
P L GH ++ + DG++ +S D ++LWD+ ++ + ++ ++
Sbjct: 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 175 WDYRWMDYPPQARDLKHPCDQSVATY----KGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 230
D R + + + +K V Y + HS + +R FSP ++ I +
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--FSP--NSSNPIIVSCGW 193
Query: 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
D V V++L + + HT + + P + S DG + W+
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
V S+ ++ +GS D + ++DL +G HT V ++ +VS S D +
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 277 VRWEFPG 283
W G
Sbjct: 153 KLWNTLG 159
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
SG ++ A + ++ +G+ G+ I ++ F +G GS D ++DL A+
Sbjct: 212 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 72 KLSLRILAHTSD-----VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 126
+ ++ ++ D + +V F +SG L+ +G DD C VWD +K AGVL G
Sbjct: 270 Q---ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 321
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H ++ + DG + + D +K+W+
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 256
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 257 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 159 K 159
K
Sbjct: 312 K 312
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 97
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 168
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 169 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 205
R+ C F +E D + + P R DQ + TY ++
Sbjct: 225 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Query: 206 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 281 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 265 PMLVSSSWDGDVVRWE 280
+ + SWD + W
Sbjct: 336 MAVATGSWDSFLKIWN 351
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 185 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 231
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 28 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 87
Query: 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ ++D + +V A+ +S V C++ PS
Sbjct: 88 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
SG ++ A + ++ +G+ G+ I ++ F +G GS D ++DL A+
Sbjct: 201 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 72 KLSLRILAHTSD-----VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 126
+ ++ ++ D + +V F +SG L+ +G DD C VWD +K AGVL G
Sbjct: 259 Q---ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H ++ + DG + + D +K+W+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 159 K 159
K
Sbjct: 301 K 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 97
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 205
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 206 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 265 PMLVSSSWDGDVVRWE 280
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 185 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 231
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
SG ++ A + ++ +G+ G+ I ++ F +G GS D ++DL A+
Sbjct: 201 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 72 KLSLRILAHTSD-----VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 126
+ ++ ++ D + +V F +SG L+ +G DD C VWD +K AGVL G
Sbjct: 259 Q---ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H ++ + DG + + D +K+W+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 159 K 159
K
Sbjct: 301 K 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 97
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 205
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 206 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 265 PMLVSSSWDGDVVRWE 280
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 185 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 231
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
SG ++ A + ++ +G+ G+ I ++ F +G GS D ++DL A+
Sbjct: 201 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 72 KLSLRILAHTSD-----VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 126
+ ++ ++ D + +V F +SG L+ +G DD C VWD +K AGVL G
Sbjct: 259 Q---ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H ++ + DG + + D +K+W+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 159 K 159
K
Sbjct: 301 K 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 97
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 205
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 206 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 265 PMLVSSSWDGDVVRWE 280
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 185 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 231
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + S +G V+ S D + +++L+ + + L HT DV +V F ++ +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI--DSRGDGRYLISNGKDQAI 152
+ SG DN +VW NVKG+ L H + ++ + D ++S G D +
Sbjct: 125 V-SGGRDNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 153 KLWDI 157
K+WD+
Sbjct: 179 KVWDL 183
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177
G P L GH ++ + +G + +S D +++LW+++ N C F + D
Sbjct: 57 GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ----NGQCQYKFLGHTKDV 112
Query: 178 RWMDYPPQAR--------------DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223
+ + P R ++K C ++ + H+ + +R FSP S
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL-SRGAHTDWVSCVR--FSP--SLDAP 167
Query: 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVR 278
I +G D+ V V+DL +G V LK HT+ V + P + SS DG D+ +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 279 WEFPGNGEAAPPLNKKRIRRRQFYL 303
E A P+N+ ++++
Sbjct: 228 GEALSEMAAGAPINQICFSPNRYWM 252
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 36 GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93
G ++ + ++FS D +V+G D+ + V+DL +L + HT+ V +V +
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD- 207
Query: 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQA 151
G L S D + ++WD KG+ + + I F RY + ++
Sbjct: 208 GSLCASSDKDGVARLWDL----TKGEALSEMAAGAPINQICF----SPNRYWMCAATEKG 259
Query: 152 IKLWDIRK 159
I+++D+
Sbjct: 260 IRIFDLEN 267
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
SG ++ A + ++ +G+ G+ I ++ F +G GS D ++DL A+
Sbjct: 201 SGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 72 KLSLRILAHTSD-----VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 126
+ ++ ++ D + +V F +SG L+ +G DD C VWD +K AGVL G
Sbjct: 259 Q---ELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310
Query: 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
H ++ + DG + + D +K+W+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD C+++D ++ + H + GIT + GR L++ D +WD
Sbjct: 246 DDATCRLFD-----LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 159 K 159
K
Sbjct: 301 K 301
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 32/256 (12%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLI 97
+ + ++ G + G D+ +Y+L+ + ++R+ HT ++ F D+ + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQI 157
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+ S D C +WD G+ GH + + D R +S D + KLWD+
Sbjct: 158 VTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKGHSV 205
R+ C F +E D + + P R DQ + TY ++
Sbjct: 214 RE----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Query: 206 LRTLIRCHFSPV-YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ C + V +S + + G D V+D + ++ L H + V
Sbjct: 270 I-----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 265 PMLVSSSWDGDVVRWE 280
+ + SWD + W
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 185 QARDLKHPCDQSVATYKGHSV---------LRTLIRCHFSPVYS----TGQKYIYTGSHD 231
Q RD + C + + +++ R +R H + +Y+ T + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD 76
Query: 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
+ ++D + +V A+ +S V C++ PS
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 64
V++ + SG++ +LA E S + S+K+S DG L G + +
Sbjct: 115 VYVWNADSGSVSALAETDE---------------STYVASVKWSHDGSFLSVGLGNGLVD 159
Query: 65 VYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123
+YD+E+ + LR +A H + V + + H++ SGS D R N + G
Sbjct: 160 IYDVES-QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ---IGT 212
Query: 124 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
L GH + + R DG L S G D +++WD R
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + L + +DG +L +G +D+ + ++D ++ H + V V + +L
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 97 IYSG 100
+ +G
Sbjct: 275 LATG 278
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 165
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 257 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
+ + +W P ++++ G T R H + G++
Sbjct: 316 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 359
Query: 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 284
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 360 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 165
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 259 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
+ + +W P ++++ G T R H + G++
Sbjct: 318 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 361
Query: 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 284
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 362 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 34/240 (14%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106
L++ S D I ++D+ A R++ HT+ V V + L S +DD
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 165
+WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 261 MIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
+ + +W P ++++ G T R H + G++
Sbjct: 320 SFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLHVWDLSKIGEEQS 363
Query: 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WEFPGN 284
+ D + + G HT+ + D SW+P++P ++ S + ++++ W+ N
Sbjct: 364 TEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SG 100
+ FSTD R + S D + +++ +L H+ VN F + S HL+ +G
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATG 725
Query: 101 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160
S D K+WD LN K + + GH + D + L S D +KLWD
Sbjct: 726 SSDCFLKLWD---LNQK-ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 161 SSNASCNL 168
+ S N+
Sbjct: 782 NERKSINV 789
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 49/229 (21%)
Query: 75 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 134
L + HT V CF ++ + G+D L +V+ G+ + H + +
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTL-QVFKAE----TGEKLLEIKAHEDEVLCC 669
Query: 135 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194
D R++ + D+ +K+W+ M+
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWN--SMTG-------------------------------- 695
Query: 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
+ V TY HS + CHF+ S+ + TGS D + ++DL E + HT+
Sbjct: 696 ELVHTYDEHS--EQVNCCHFTN--SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNS 751
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFYL 303
V C + P +L S S DG + W+ E +K I +QF+L
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDATSANE------RKSINVKQFFL 794
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 20/239 (8%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDN 104
+S DG ++ + + I+++D+ + L I HT +T+ + D S HL
Sbjct: 812 WSADGARIMVAAKNK-IFLFDIHTSGLLGEI--HTGHHSTIQYCDFSPQNHLAVVALSQY 868
Query: 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
++W+ + + K A GHL + + DG +++ DQ I+LW+ +K+ N+
Sbjct: 869 CVELWNT---DSRSKVADC-RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNS 924
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIR---CHFSPVYST 220
+ L E D + + + H Q + G T + C SP
Sbjct: 925 AVML---KQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP---- 977
Query: 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
+YI G + + + +LV+ + H V + + L+SSS D ++ W
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 110
L GSSD + ++DL + + HT+ VN F + L+ S S D K+WD
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATS 780
Query: 111 ---RRCLNVK 117
R+ +NVK
Sbjct: 781 ANERKSINVK 790
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ ++SL+F DG +V+GS D I V+D+E + H S + + D ++
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 331
Query: 97 IYSGSDDNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+ SG+ D+ K+WD + CL P H +T + + + ++I++ D +K
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCL--QFNKNFVITSSDDGTVK 385
Query: 154 LWDIR 158
LWD++
Sbjct: 386 LWDLK 390
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD- 110
+ +V+GS D + V+D+E + ++ H + V V + G + SG+ D + KVWD
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDP 266
Query: 111 --RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD------IRKMSS 162
CL+ L GH + + + DG +++S D +I++WD I ++
Sbjct: 267 ETETCLHT-------LQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 222
+ S G + + + Q + T +G + ++ + C +
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC-----LQFNK 372
Query: 223 KYIYTGSHDSCVYVYDLVSGEQVAAL 248
++ T S D V ++DL +GE + L
Sbjct: 373 NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 23/244 (9%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I L+F G +V+GS D+ + V+ K ++ HT V + D ++I SGS
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGS 176
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161
D KVW+ G+ L GH + + + ++S +D +++WDI
Sbjct: 177 TDRTLKVWNAE----TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI---- 226
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY--KGHSVLRTLIRCHFSPVYS 219
C + R + Y + R + D V + + + L TL + H + VYS
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYS 284
Query: 220 TG--QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277
++ +GS D+ + V+D+ +G + L H S + +LVS + D V
Sbjct: 285 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVK 342
Query: 278 RWEF 281
W+
Sbjct: 343 IWDI 346
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109
DGR +V+G+ D + V+D E + HT+ V ++ F G + SGS D +VW
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVW 304
Query: 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
D G L GH + ++ + + L+S D +K+WDI+
Sbjct: 305 DVE----TGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 347
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 62/254 (24%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106
L++ S D + ++D+ A +I+ H++ V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 165
+WD R N KP+ ++ H + + ++++ G D+ + LWD+R
Sbjct: 255 MIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR------- 306
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
NL + + T++ H + + H+SP T +
Sbjct: 307 -NLKLK-------------------------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 226 YTGSHDSCVYVYDLVS-GEQVAALKY-------------HTSPVRDCSWHPSQPMLVSSS 271
+ D + V+DL GE+ +A HT+ + D SW+P++P ++ S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 272 WDGDVVR-WEFPGN 284
+ ++++ W+ N
Sbjct: 396 SEDNIMQIWQMAEN 409
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 58 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 115 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 307 KLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 99/244 (40%), Gaps = 42/244 (17%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG------DESGHLIY-----SGSD 102
L++ S D I ++D+ A +++ D T+ G D S HL++ S +D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVV----DAKTIFTGHTAVVEDVSWHLLHESLFGSVAD 248
Query: 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMS 161
D +WD R N KP+ + H + + ++++ G D+ + LWD+R +
Sbjct: 249 DQKLMIWDTRSNNT-SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 307
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 221
+ + +W P ++++ G T R + + G
Sbjct: 308 LKLHSFESHKDEIFQVQWS-----------PHNETILASSG-----TDRRLNVWDLSKIG 351
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR-WE 280
++ + D + + G HT+ + D SW+P++P ++ S + ++++ W+
Sbjct: 352 EEQSPEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 281 FPGN 284
N
Sbjct: 404 MAEN 407
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 118/299 (39%), Gaps = 57/299 (19%)
Query: 9 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVA-GSSDDCIYV 65
D G T S ++ D AD + ++S S + LVA G+ + +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 66 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLNV----K 117
DL++ S + H ++ V + +++ + S D+ K+WD R CL
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 118 GKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170
GK + + G + G+ F DG +L++ G D ++LW+ SSN L
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWN----SSNGENTL-- 281
Query: 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 230
++Y + K KG L+ + C S ++++ +
Sbjct: 282 ---------VNYGKVCNNSK----------KG---LKFTVSCGCS------SEFVFV-PY 312
Query: 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 289
S + VY + SGEQ+ LK H V C + + L S S D +++ W P E P
Sbjct: 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW-VPSLYEPVP 370
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 23/192 (11%)
Query: 111 RRCLNVK-GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSN----- 163
RR L ++ K V H GI +D +GRY++S G D I L+D+ S
Sbjct: 25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC 84
Query: 164 -ASCNLG----------FRSYEW---DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 209
A C++G + +W D + LK ++ T + T+
Sbjct: 85 KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV 144
Query: 210 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLV 268
H SPV ST + G+ V + DL SG L+ H + SW P +L
Sbjct: 145 YSHHMSPV-STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 269 SSSWDGDVVRWE 280
++S D V W+
Sbjct: 204 TASADSRVKLWD 215
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 58 SSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114
+ D + ++D +N K S + AHT++VN + F S ++ +GS D +WD R L
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 115 NVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
+K H + I + S + L S+G D+ + +WD+ K+ S
Sbjct: 309 KLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 101/254 (39%), Gaps = 62/254 (24%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106
L++ S D + ++D+ A +I+ H++ V V + L S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNAS 165
+WD R N KP+ ++ H + + ++++ G D+ + LWD+R
Sbjct: 255 XIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR------- 306
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
NL + + T++ H + + H+SP T +
Sbjct: 307 -NLKLK-------------------------LHTFESHK--DEIFQVHWSPHNET---IL 335
Query: 226 YTGSHDSCVYVYDLVS-GEQVAALKY-------------HTSPVRDCSWHPSQPMLVSSS 271
+ D + V+DL GE+ +A HT+ + D SW+P++P ++ S
Sbjct: 336 ASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 272 WDGDVVR-WEFPGN 284
+ ++ + W+ N
Sbjct: 396 SEDNIXQIWQXAEN 409
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG---DESGHLIY 98
I S K DG L+ G + ++DL A + RI A + C+ + +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
S D VWD + + GH +G + ID DG L + G D ++ WD+R
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQ----FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 159 K 159
+
Sbjct: 214 E 214
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 206 LRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDL-VSGEQ---VAALKYHTSPVRD 257
L +I H + V +S Y+ T S D V++++ SGE+ ++ L+ H+ V+
Sbjct: 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 258 CSWHPSQPMLVSSSWDGDVVRW-EFPGNGEAAPPLN 292
WHPS+ +L SSS+D V W ++ + E LN
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 38 YSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA---HTSDVNTVCFGDE 92
+S GI + + +LV+ DD I V D A+K ++R +A HTS
Sbjct: 22 FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS---------- 71
Query: 93 SGHLIYSGSDDNLCKVWDRRC---LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149
L+ +GS D+ +W + + ++ GH + + DG YL + +D
Sbjct: 72 ---LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYR---WMDYPPQARDLKHPCDQSVATYKGHS-- 204
+++ +W+ + C + + D + W +P +A D +V +K +
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDD 186
Query: 205 -VLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVY 237
++ H V+S+ G + +GS DS V V+
Sbjct: 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 35/224 (15%)
Query: 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------LRILAHTSDVNTVCFGDESGH 95
FS K + D L++GS D + ++ L + + + H V+ + E+
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
I S D L ++WD R G +GH + + D R ++S G ++ IKLW
Sbjct: 91 AISSSWDKTL-RLWDLRT----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 156 DIRKMSSNASCNLGFRSYEWDYRWMD---YPP--QARDLKHPC---------DQSVATYK 201
+I C E W+ Y P ++ + P D + +
Sbjct: 146 NIL-----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 202 GHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSCVYVYDLVS 241
+ +R + H S V S KYI TG D + ++D+++
Sbjct: 201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-------ALKYHTS 253
+GHS T I FS + + +GS D V ++ L EQ AL H
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 254 PVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
V D + +SSSWD + W+
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWDL 105
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGD--E 92
G+ ++S+ FS D R++++ ++ I ++++ E S H+ V+ V + +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 93 SGHLIYSGSDDNLCKVWDRR--CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 150
S + + + WD R N + H + + +G+Y+ + GKD+
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 151 AIKLWDIRKMS 161
+ +WDI ++
Sbjct: 236 KLLIWDILNLT 246
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 24/211 (11%)
Query: 91 DESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 147
+E ++ SGS D +W + G P L GH ++ + + + IS+
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 148 KDQAIKLWDIRKMSSNASCNLGFRS------YEWDYRWMDYPPQARDLK-----HPCDQS 196
D+ ++LWD+R ++ +G +S + D R + R++K C S
Sbjct: 96 WDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS 154
Query: 197 VATYKGHSVLRTLIRCHFSPVYSTGQK------YIYTGSHDSCVYVYDLVSGEQVAALKY 250
A + HS + +R +SP+ + K Y + D + V++ + + K
Sbjct: 155 SAEKENHSDWVSCVR--YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA 211
Query: 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
H S V S P+ + + D ++ W+
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 47/234 (20%)
Query: 54 LVAGSSDDCIYVYDLEANKLSL-----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108
+V+ S D I ++ L + + R+ H+ V V + G SGS D ++
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRL 456
Query: 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168
WD G +GH + + + D R ++S +D+ IKLW+ L
Sbjct: 457 WDLAA----GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----------TL 502
Query: 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYT 227
G C +++ +G R + C FSP +T Q I +
Sbjct: 503 G----------------------ECKYTIS--EGGEGHRDWVSCVRFSP--NTLQPTIVS 536
Query: 228 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
S D V V++L + + + L HT V + P + S DG V+ W+
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDES 93
G++ + S+ FS D R++V+ S D I +++ +S H V+ V F +
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 94 GH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152
I S S D KVW+ ++ L GH ++ + DG S GKD +
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRS----TLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 153 KLWDI 157
LWD+
Sbjct: 586 LLWDL 590
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + + S+DG+ ++GS D + ++DL A + R + HT DV +V F ++ +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 97 IYSGSDDNLCKVWD 110
+ S S D K+W+
Sbjct: 488 V-SASRDRTIKLWN 500
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113
+V+ S D + V++L KL + HT V+TV + G L SG D + +WD
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDL-- 590
Query: 114 LNVKGKPAGVLMGHLEGITFIDSR--GDGRYLISNGKDQAIKLWDIRKMS 161
G + LE + I + RY + + IK+WD+ S
Sbjct: 591 ------AEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 282 PGN 284
N
Sbjct: 127 ENN 129
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 157 IRKMSSNASCNLGFR 171
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 110 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 150
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 282 PGN 284
N
Sbjct: 127 ENN 129
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 157 IRKMSSNASCNLGFR 171
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109
D ++ S D I ++D + + H S+V+ F + +I SGS+D K+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIW 255
Query: 110 D------RRCLNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQ 150
+ + LNV + + + H G + G +G ++S G D+
Sbjct: 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ ++ + G + V+GS D CI V+DL + AH + V V + S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 102 DDNLCKVWDRRC 113
+DN +WD RC
Sbjct: 190 EDNRILLWDTRC 201
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 282 PGN 284
N
Sbjct: 127 ENN 129
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 157 IRKMSSNASCNLGFR 171
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD--- 110
++ S D I ++D + + H S+V+ F + +I SGS+D K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST 259
Query: 111 ---RRCLNVKGKPAGVLMGHLEG-ITFIDSRGD-GRYLISNGKDQ 150
+ LNV + + + H G +I S D G ++S G D+
Sbjct: 260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 57/300 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
+S +F L +S DG ++ + S+D I ++++ K+ I T D+ +
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------IEDQQLGI 290
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAI 152
I++ L + +N G V GH + IT + S DG+ L S + I
Sbjct: 291 IWT--KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348
Query: 153 KLWDIRKMSSN-------ASCNLGFR--------SYEWDYRWMDYP-------------- 183
WDI SN A+ G + + WD P
Sbjct: 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408
Query: 184 -----PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV--------YSTGQKYIYTGSH 230
P + D +VA H + + + P+ S ++++ G
Sbjct: 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468
Query: 231 DSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 288
DS V+VY L SG V+ +K H + + ++ + LV++ V+ + N E A
Sbjct: 469 DSKVHVYKL-SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113
+++GS D+ + +++ K HT V++V + + G L S D +++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYN--- 218
Query: 114 LNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
V G GV + H + + DG + S D+ IK+W++ + +
Sbjct: 219 -GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 167 NLGFR 171
+G R
Sbjct: 278 PVGTR 282
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLI 97
I S+ FS +G LVA + Y + AN L HT+ V V + ++ L
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVRL- 551
Query: 98 YSGSDDNLCKVWDRR-----CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152
+GS DN VW+ + +KG A M + + +++ ++S G+D I
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHA---MSSVNSVIWLNET----TIVSAGQDSNI 604
Query: 153 KLWDI 157
K W++
Sbjct: 605 KFWNV 609
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 26/176 (14%)
Query: 110 DRRCLNVKGKPAGVLMGHLEG---ITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSN 163
D RC + PAG L+ G I + GD + ++S G + + RK++
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV-----RKVAW- 69
Query: 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223
+ C S +D + D + V T +GH ++ S ++
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDF-----ECVTTLEGH---ENEVK---SVAWAPSGN 118
Query: 224 YIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
+ T S D V+V+++ ++ V+ L HT V+ WHPSQ +L S+S+D V
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALKYHTSPVRDC 258
+GH RT+ + +SP Y+ + S D +C++ + E V L+ H + V+
Sbjct: 58 EGHQ--RTVRKVAWSPC----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV 111
Query: 259 SWHPSQPMLVSSSWDGDVVRWEFPGNGE 286
+W PS +L + S D V WE E
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWEVDEEDE 139
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
KF ++ GS D I V++ + + AH + ++ +++ SGSDD
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLT 120
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFID-SRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
K+W+ GH + + + D S D+ +K+W + + + N
Sbjct: 121 VKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
+ G E ++DY P + Y
Sbjct: 178 TLTTG---QERGVNYVDYYPLP----------------------------------DKPY 200
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
+ T S D + ++D + VA L+ H S V +HP+ P+++S S DG + W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
+ +I GS D + V++ +GE+V + H +R + HP++P ++S S D V W +
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 282 PGN 284
N
Sbjct: 127 ENN 129
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ + SDD K+WD + + L GH+ ++F +IS +D +K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 157 IRKMSSNASCNLGFR 171
+ N+G
Sbjct: 257 SSTYKVEKTLNVGLE 271
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 54 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113
++ S D I ++D + + H S+V+ F + +I SGS+D K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST 259
Query: 114 LNVK 117
V+
Sbjct: 260 YKVE 263
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 47/242 (19%)
Query: 53 ELVAGSSDDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYSGSDDNLC 106
L+ GS D ++D+ + + I HT+DV ++ + ++ SGS D
Sbjct: 172 RLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
++WD R + + GH I + DG+ + D +L+D+R
Sbjct: 231 RLWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH----- 282
Query: 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226
+ + P D + P SVA +S + ++
Sbjct: 283 ---------QLQVYNREPDRNDNELPIVTSVA-------------------FSISGRLLF 314
Query: 227 TGSHDSCVYVYDLVSGEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
G + YV+D + E V L H + L + SWD ++ W F
Sbjct: 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Query: 283 GN 284
G+
Sbjct: 375 GH 376
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD--------VNTVC 88
G+ I S+KF DG+ GS D ++D+ L++ D V +V
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVA 305
Query: 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 148
F SG L+++G + C VWD + + H I+ + DG L +
Sbjct: 306 F-SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 149 DQAIKLW 155
D+ +K+W
Sbjct: 365 DKNLKIW 371
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 207 RTLIRCHFSPVYSTG----QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262
RTL + H VYS + +I + S D + V++ ++ ++ A+K H V +C++ P
Sbjct: 60 RTL-QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP 118
Query: 263 S 263
+
Sbjct: 119 N 119
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 165
Query: 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171
+ G L+GH +T I GR ++S D I+LW+ C G
Sbjct: 166 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTT 212
Query: 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYT 227
+ ++ ++ H S+A + G R L S + T KY+
Sbjct: 213 IHTFN---------RKENPHDGVNSIALFVGTD--RQLHEISTSKKNNLEFGTYGKYVIA 261
Query: 228 GSHDSCVYVYDLVSGEQVAAL 248
G + V+++ S EQ L
Sbjct: 262 GHVSGVITVHNVFSKEQTIQL 282
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSD 102
+L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G +
Sbjct: 249 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 308
Query: 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 154
+ + WD R P G + + EG + G +S+G D +IKL
Sbjct: 309 NGMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 357
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111
R + G+++ I V D N AH S++ + F SG + S S D K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSV 168
Query: 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171
+ G L+GH +T I GR ++S D I+LW+ C G
Sbjct: 169 K----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE---------CGTGTT 215
Query: 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYT 227
+ ++ ++ H S+A + G R L S + T KY+
Sbjct: 216 IHTFN---------RKENPHDGVNSIALFVGTD--RQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 228 GSHDSCVYVYDLVSGEQVAAL 248
G + V+++ S EQ L
Sbjct: 265 GHVSGVITVHNVFSKEQTIQL 285
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSD 102
+L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G +
Sbjct: 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311
Query: 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKL 154
+ + WD R P G + + EG + G +S+G D +IKL
Sbjct: 312 NGMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYFAAGALFVSSGFDTSIKL 360
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 217
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
D R V L GH + + + DGR+L S G D + +W
Sbjct: 218 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 139 DGRYLISNGKDQAIKLWDI---RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH---- 191
+G YL ++LWD+ +++ + S + S W+ + ++ + H
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 228
Query: 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----QVAA 247
+ VAT GHS +R ++ +++ +G +D+ V V+ GE +
Sbjct: 229 VAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 282
Query: 248 LKYHTSPVRDCSWHPSQPMLVSS 270
H V+ +W P Q ++++
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLAT 305
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 126
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
D R V L GH + + + DGR+L S G D + +W
Sbjct: 127 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 129 EGITFIDSRGDGRYLISNGKDQAIKLWDI---RKMSSNASCNLGFRSYEWDYRWMDYPPQ 185
E I+ + +G YL ++LWD+ +++ + S + S W+ + +
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR 127
Query: 186 ARDLKH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241
+ + H + VAT GHS +R ++ +++ +G +D+ V V+
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAP 181
Query: 242 GE----QVAALKYHTSPVRDCSWHPSQPMLVSS 270
GE + H V+ +W P Q ++++
Sbjct: 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
I S+ + +G L G+S + ++D++ K + +H++ V ++ + + +++ SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGS 206
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
D R V L GH + + + DGR+L S G D + +W
Sbjct: 207 RSGHIHHHDVR---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 139 DGRYLISNGKDQAIKLWDI---RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH---- 191
+G YL ++LWD+ +++ + S + S W+ + ++ + H
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 217
Query: 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----QVAA 247
+ VAT GHS +R ++ +++ +G +D+ V V+ GE +
Sbjct: 218 VAEHHVATLSGHSQEVCGLR------WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271
Query: 248 LKYHTSPVRDCSWHPSQPMLVSS 270
H V+ +W P Q ++++
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLAT 294
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 209 LIRCHFSPVYSTG-----QKYIYTGSHDSCVYVYDLVSG-------EQVAALKYHTSPVR 256
L+ H +PV I +GS D V V+++ G E V L+ HT V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 257 DCSWHPS-QPMLVSSSWDGDVVRWEFPGNGEAA 288
+WHP+ Q +L+S+ D ++ W+ G G A
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDV-GTGAAV 167
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 133
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 134 IDSRGDGR-YLISNGKDQAIKLWDI 157
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121
I+VY + + +++ H ++ + F D + L+ S SDD ++W G
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGG----NGNSQ 282
Query: 122 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159
GH + I GD + +IS D +++LW +++
Sbjct: 283 NCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 48/231 (20%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
LA + D N++ G E+G L R N G VL H I +
Sbjct: 114 LAWSHDGNSIVTGVENGEL---------------RLWNKTGALLNVLNFHRAPIVSVKWN 158
Query: 138 GDGRYLISNGKDQAIKLWDIRK--------------MSSNASCNLGFRSYEWDYRWMD-- 181
DG ++IS + LW++ S NA + G S D W+D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218
Query: 182 ---YP-PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YSTGQKYIYTGSHDSC 233
P P+ + + T K + H P+ ++ K + + S D
Sbjct: 219 KFVIPGPKGAIFVYQITEKTPTGK--------LIGHHGPISVLEFNDTNKLLLSASDDGT 270
Query: 234 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284
+ ++ +G H+ + SW ++S S DG V W N
Sbjct: 271 LRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRLWSLKQN 320
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ +L +DG + V+G D + V+DL + AH+S+VN V + S
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 102 DDNLCKVWDRRCLNVKGKPA 121
+D +WD R K KPA
Sbjct: 202 EDGRILLWDTR----KPKPA 217
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 229 SHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGN 284
S+D V ++ +G Q+A H++ V W P + P+L+ +S DG V EF N
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
Query: 285 GEAAP 289
G +P
Sbjct: 134 GTTSP 138
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 254
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101
Query: 255 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 289
V W P + PML+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP 138
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 209 LIRCHFSPVYSTG-----QKYIYTGSHDSCVYVYDLVSG-------EQVAALKYHTSPVR 256
L+ H +PV I +GS D V V+++ G E V L+ HT V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 257 DCSWHPS-QPMLVSSSWDGDVVRWEFPGNGEAA 288
+WHP+ Q +L+S+ D ++ W+ G G A
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDV-GTGAAV 167
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 251 HTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP 289
HT+PV D +W P + ++ S S D V+ WE P G P
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW---DRRCLNVKGKPAGVLMGHLEGITF 133
+ HT+ V + + + ++I SGS+D VW D + +P L GH + +
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 134 IDSRGDGR-YLISNGKDQAIKLWDI 157
+ + L+S G D I +WD+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 37 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 94
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 153
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNVI---LLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 154 LWDIRKMSSNAS 165
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 37 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 94
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 219
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 153
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 220 SSRMVVTGDNVGNVI---LLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 154 LWDIRKMSSNAS 165
+WD+R++ AS
Sbjct: 277 IWDLRQVRGKAS 288
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 254
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 45 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 103
Query: 255 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 289
V W P + P+L+ +S DG V EF NG +P
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 37 GYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG 94
G I LKF+ + + A S + + D + N LR+ A + +N C D S
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN--ILRVFASSDTINIWFCSLDVSA 220
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIK 153
+ DN+ V LN+ GK L H + +T + + ++ DQ +K
Sbjct: 221 SSRMVVTGDNVGNVI---LLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 154 LWDIRKMSSNAS 165
+WD+R++ AS
Sbjct: 278 IWDLRQVRGKAS 289
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 254
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101
Query: 255 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 289
V W P + P+L+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 206
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 207 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 258
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSG 100
+ + +S DG ++ S D ++DL +N+ +++I H + V T+ + + + +G
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 101 SDDNLCKVWDRRCLN 115
S D K WD R N
Sbjct: 148 SWDKTLKFWDTRSSN 162
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 165
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 166 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 217
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 169
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 170 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 221
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRW 279
Q + TG D + ++D+ G V+ LK H + + + +HPS P L + S DG + W
Sbjct: 249 QHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 280 E 280
+
Sbjct: 309 D 309
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ H + +N + F +L+ S S D+ ++W+ + + GV GH + + D
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-EGHRDEVLSADYD 170
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
G ++S G D ++KLW +++S N SY+++ + P ++ + P
Sbjct: 171 LLGEKIMSCGMDHSLKLW---RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTG------SHDSCVYVYDLVSGE--QVAALKYHTSP 254
H ++ TL H PV+ + G S+D V ++ +G Q+A H++
Sbjct: 43 HKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSAS 101
Query: 255 VRDCSWHPSQ--PMLVSSSWDGDVVRWEFPGNGEAAP 289
V W P + P L+ +S DG V EF NG +P
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSP 138
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLS 74
ES +N T + G S+ D+ + SL ++ + A + S + ++DL+A K
Sbjct: 148 ESPSNYTPLTPGQSMSSVDE------VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201
Query: 75 LRILAHTS-------DVNTVCFGDESGHLIYS--GSD-DNLCKVWDRRCLNVKGKPAGVL 124
+ L++TS ++ V + ++ + + GSD D +WD R N P L
Sbjct: 202 IH-LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTL 257
Query: 125 -MGHLEGITFID-SRGDGRYLISNGKDQAIKLWD 156
GH +GI +D D L+S+G+D + LW+
Sbjct: 258 NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 3 PIVHIVDVGSGTMESLANVTE 23
P+VH++DV SG ++SL N E
Sbjct: 5 PVVHVIDVESGNLQSLTNAIE 25
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 3 PIVHIVDVGSGTMESLANVTE 23
P+VH++DV SG ++SL N E
Sbjct: 5 PVVHVIDVESGNLQSLTNAIE 25
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 90
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Query: 91 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 141
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 125
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201
L G D ++L+D + S S L + + + PP A +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EMKVLSIPP-------------ANHL 167
Query: 202 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 219
Query: 258 CSWHPS 263
SW PS
Sbjct: 220 ISWAPS 225
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 90
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 5 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 64
Query: 91 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 141
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 65 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 123
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201
L G D ++L+D + S S L + + + PP A +
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EMKVLSIPP-------------ANHL 165
Query: 202 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 166 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 217
Query: 258 CSWHPS 263
SW PS
Sbjct: 218 ISWAPS 223
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRY 142
+N+VC+ E L++ G D + V G+ P L+GH + + S DG
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGV---PLFATSGEDPLYTLIGHQGNVCSL-SFQDG-V 116
Query: 143 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 202
+IS D+ K+W + N + + WD + + + + + L D+++ ++
Sbjct: 117 VISGSWDKTAKVWKEGSLVYNLQAH---NASVWDAKVVSF-SENKFLTASADKTIKLWQN 172
Query: 203 HSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
V++T H V + + S+D + + D +G+ + + H S V
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 89/246 (36%), Gaps = 44/246 (17%)
Query: 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 90
D G+ + + + GR + SSD I V+ L+ + +LS AH S + + +
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Query: 91 D-ESGHLIYSGSDDNLCKVWDR-----RCLNVKGKPAGVL---MGHLEGITFIDSRGDGR 141
E G +I S S D K+W+ C + L G L + F + G
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GL 125
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201
L G D ++L+D + S S L + + + PP A +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTS-----EXKVLSIPP-------------ANHL 167
Query: 202 GHSVLRTLIRCHFSP----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
+ FSP V + Q IY D ++V A L H S +R
Sbjct: 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------AAKLPGHKSLIRS 219
Query: 258 CSWHPS 263
SW PS
Sbjct: 220 ISWAPS 225
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 214 FSPVYSTGQKYIYTGSHDS----CVYVYDLVSGEQVAALKY-------------HTSPVR 256
FSP Q + +HDS C+ +Y+ GE++ +L H+S V
Sbjct: 241 FSP-----QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 257 DCSWHPSQPMLVSSSWDGDVVRWE 280
S++ S L S+ WDG + W+
Sbjct: 296 SLSFNDSGETLCSAGWDGKLRFWD 319
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 25/157 (15%)
Query: 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHL- 96
+FG SL+ R L G +++++LEA ++ + + H +N + G
Sbjct: 72 TFGATSLQ----QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE 127
Query: 97 ----IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--------ITFIDSRGDGRYLI 144
I +GS D KVWD R K P M ++G + F ++ ++
Sbjct: 128 GAPEIVTGSRDGTVKVWDPR---QKDDPVAN-MEPVQGENKRDCWTVAFGNAYNQEERVV 183
Query: 145 SNGKDQA-IKLWDIRKMSSNASCNL--GFRSYEWDYR 178
G D IKL+D+R M+ N+ G S E+D +
Sbjct: 184 CAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK 220
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 214 FSPVYSTGQKYIYTGSHDS----CVYVYDLVSGEQVAALKY-------------HTSPVR 256
FSP Q + +HDS C+ +Y+ GE++ +L H+S V
Sbjct: 251 FSP-----QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 257 DCSWHPSQPMLVSSSWDGDVVRWE 280
S++ S L S+ WDG + W+
Sbjct: 306 SLSFNDSGETLCSAGWDGKLRFWD 329
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 128 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187
L+ +TFID+ R++I G + + + ++S N+ + + + Y + P R
Sbjct: 314 LDQVTFIDNHDMDRFMIDGGDPRKVDMALAVLLTSRGVPNIYYGTEQ--YMTGNGDPNNR 371
Query: 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS-TGQKYIYTGSHDSCVYVYDLVSGEQVA 246
+ +++ Y+ L +L R + + Y T Q++I + VYVY+ G+ V
Sbjct: 372 KMMSSFNKNTRAYQVIQKLSSLRRNNPALAYGDTEQRWI-----NGDVYVYERQFGKDVV 426
Query: 247 ALKYHTSPVRDCS 259
+ + S + S
Sbjct: 427 LVAVNRSSSSNYS 439
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSW 260
HS L I CH ++ + I ++ V++Y+ + QV LK H V W
Sbjct: 4 HSFLVEPISCH---AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 60
Query: 261 HPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 298
P +V+ D + W G P L RI R
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINR 97
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSW 260
HS L I CH ++ + I ++ V++Y+ + QV LK H V W
Sbjct: 4 HSFLVEPISCH---AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 261 HPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 298
P +V+ D + W G P L RI R
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGR-TWKPTLVILRINR 97
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
V +TG I + S D + Y+L E + + H + + +P L+S S+DG +
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
Query: 277 VRW 279
+ W
Sbjct: 360 MEW 362
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
F+ V + ++I T +H C D + EQ+ HT +R+ + + ++ WD
Sbjct: 229 FNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
Query: 274 GDVVRWE 280
G+++ E
Sbjct: 289 GEMLYQE 295
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
F+ V + ++I T +H C D + EQ+ HT +R+ + + ++ WD
Sbjct: 229 FNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWD 288
Query: 274 GDVVRWE 280
G+++ E
Sbjct: 289 GEMLYQE 295
>pdb|2RD7|A Chain A, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 367
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 38 YSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94
Y++G+++ KF D G + S IY Y L +K + L TS T CFG G
Sbjct: 200 YNYGMYA-KFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLG 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,147,843
Number of Sequences: 62578
Number of extensions: 445602
Number of successful extensions: 1685
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 457
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)