Query 022074
Match_columns 303
No_of_seqs 125 out of 1375
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.7E-36 1E-40 254.0 18.4 256 16-284 136-441 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-36 3.3E-41 259.6 15.1 229 4-280 224-458 (459)
3 KOG0263 Transcription initiati 100.0 5.6E-36 1.2E-40 273.4 19.3 206 35-285 447-652 (707)
4 KOG0315 G-protein beta subunit 100.0 2E-34 4.4E-39 231.8 22.7 264 3-284 6-290 (311)
5 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-35 1.7E-39 249.2 17.6 204 37-284 173-377 (459)
6 KOG0271 Notchless-like WD40 re 100.0 5.5E-33 1.2E-37 235.4 21.2 228 10-280 172-479 (480)
7 KOG0286 G-protein beta subunit 100.0 5.6E-32 1.2E-36 222.2 22.2 227 11-280 116-343 (343)
8 KOG0279 G protein beta subunit 100.0 3.5E-31 7.6E-36 216.3 22.3 230 9-284 30-264 (315)
9 KOG0282 mRNA splicing factor [ 100.0 1.2E-31 2.5E-36 233.2 17.7 257 11-280 231-503 (503)
10 KOG0286 G-protein beta subunit 100.0 7.6E-30 1.7E-34 209.7 23.1 222 12-281 72-302 (343)
11 KOG0279 G protein beta subunit 100.0 7.5E-30 1.6E-34 208.5 21.8 205 34-284 10-224 (315)
12 KOG0281 Beta-TrCP (transducin 100.0 1.5E-31 3.1E-36 224.5 11.2 220 10-284 210-430 (499)
13 KOG0263 Transcription initiati 100.0 2.7E-30 5.7E-35 236.3 19.9 200 40-284 379-609 (707)
14 KOG0266 WD40 repeat-containing 100.0 1.6E-29 3.4E-34 233.5 24.0 261 11-282 175-454 (456)
15 KOG0295 WD40 repeat-containing 100.0 3.6E-30 7.8E-35 217.1 17.2 249 4-284 115-366 (406)
16 KOG0285 Pleiotropic regulator 100.0 9.9E-30 2.1E-34 214.1 19.1 203 36-284 148-350 (460)
17 KOG0284 Polyadenylation factor 100.0 2.1E-30 4.6E-35 221.2 12.5 224 8-282 111-337 (464)
18 KOG0273 Beta-transducin family 100.0 1.6E-28 3.5E-33 213.1 22.9 221 22-284 259-484 (524)
19 KOG0265 U5 snRNP-specific prot 100.0 1.3E-28 2.8E-33 203.1 20.4 233 11-278 63-334 (338)
20 KOG0284 Polyadenylation factor 100.0 1.1E-29 2.5E-34 216.8 13.1 201 37-283 94-295 (464)
21 KOG0319 WD40-repeat-containing 100.0 2.1E-29 4.5E-34 228.8 15.2 230 12-287 382-624 (775)
22 KOG0293 WD40 repeat-containing 100.0 2.1E-28 4.6E-33 209.4 19.4 264 11-283 240-514 (519)
23 KOG0265 U5 snRNP-specific prot 100.0 7E-28 1.5E-32 198.8 21.7 237 5-287 13-251 (338)
24 KOG0278 Serine/threonine kinas 100.0 3.3E-29 7.2E-34 202.0 10.4 237 36-282 56-297 (334)
25 KOG0266 WD40 repeat-containing 100.0 3.7E-27 8E-32 217.7 24.6 203 38-284 158-366 (456)
26 KOG0645 WD40 repeat protein [G 100.0 1.4E-26 3E-31 188.7 24.7 207 35-281 10-224 (312)
27 PTZ00421 coronin; Provisional 100.0 1.7E-26 3.6E-31 213.5 27.8 207 35-284 71-292 (493)
28 KOG0291 WD40-repeat-containing 100.0 4E-27 8.6E-32 214.4 23.0 208 35-283 346-613 (893)
29 PTZ00420 coronin; Provisional 100.0 4.7E-26 1E-30 211.8 30.7 236 6-283 43-294 (568)
30 KOG0319 WD40-repeat-containing 100.0 2.1E-27 4.6E-32 215.7 20.1 223 32-295 358-589 (775)
31 PLN00181 protein SPA1-RELATED; 100.0 3.3E-26 7.1E-31 225.4 28.5 231 10-281 548-792 (793)
32 KOG0294 WD40 repeat-containing 100.0 1.6E-26 3.5E-31 191.9 21.2 237 36-285 40-284 (362)
33 KOG0315 G-protein beta subunit 100.0 2.2E-26 4.8E-31 185.6 20.9 224 52-284 11-247 (311)
34 KOG0295 WD40 repeat-containing 100.0 2.1E-26 4.5E-31 194.4 21.4 200 36-280 190-404 (406)
35 KOG0275 Conserved WD40 repeat- 100.0 1.4E-27 3.1E-32 199.1 13.7 262 12-280 230-507 (508)
36 KOG0296 Angio-associated migra 100.0 6.3E-26 1.4E-30 191.6 23.5 259 12-282 81-398 (399)
37 KOG0277 Peroxisomal targeting 99.9 8.4E-27 1.8E-31 188.5 16.7 202 40-284 61-267 (311)
38 KOG0277 Peroxisomal targeting 99.9 7.6E-27 1.7E-31 188.7 15.1 204 36-281 101-308 (311)
39 KOG0291 WD40-repeat-containing 99.9 6.6E-26 1.4E-30 206.6 22.1 201 40-284 308-510 (893)
40 KOG0316 Conserved WD40 repeat- 99.9 2.8E-26 6.1E-31 183.7 17.3 238 36-282 14-257 (307)
41 KOG0292 Vesicle coat complex C 99.9 2.6E-26 5.7E-31 212.2 19.6 229 37-282 49-280 (1202)
42 KOG0318 WD40 repeat stress pro 99.9 5E-25 1.1E-29 193.8 26.2 250 36-286 187-521 (603)
43 KOG0276 Vesicle coat complex C 99.9 2.2E-26 4.7E-31 205.9 18.0 201 40-282 56-257 (794)
44 KOG0316 Conserved WD40 repeat- 99.9 9.6E-26 2.1E-30 180.6 19.4 250 19-280 41-297 (307)
45 cd00200 WD40 WD40 domain, foun 99.9 1.3E-24 2.8E-29 186.0 27.7 256 14-280 28-289 (289)
46 KOG0645 WD40 repeat protein [G 99.9 3.7E-25 8E-30 180.4 22.1 273 5-282 22-311 (312)
47 KOG1407 WD40 repeat protein [F 99.9 9.7E-26 2.1E-30 183.0 18.3 234 33-277 14-256 (313)
48 KOG0264 Nucleosome remodeling 99.9 1.1E-25 2.4E-30 194.8 19.5 236 7-282 137-404 (422)
49 KOG0647 mRNA export protein (c 99.9 1.8E-25 3.9E-30 184.8 19.7 231 35-271 23-312 (347)
50 KOG0313 Microtubule binding pr 99.9 1.5E-25 3.2E-30 190.2 19.5 248 34-284 100-378 (423)
51 PLN00181 protein SPA1-RELATED; 99.9 1E-24 2.3E-29 214.8 28.6 226 12-282 500-738 (793)
52 cd00200 WD40 WD40 domain, foun 99.9 2.4E-24 5.1E-29 184.4 27.3 239 36-283 6-250 (289)
53 KOG0273 Beta-transducin family 99.9 1.9E-25 4.2E-30 194.1 19.6 236 36-284 175-442 (524)
54 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-24 6.9E-29 178.5 25.2 236 38-284 13-264 (311)
55 KOG0285 Pleiotropic regulator 99.9 5.4E-25 1.2E-29 185.6 20.8 255 11-284 167-441 (460)
56 KOG0281 Beta-TrCP (transducin 99.9 2.7E-26 5.9E-31 192.9 12.6 193 40-284 198-390 (499)
57 KOG0288 WD40 repeat protein Ti 99.9 2.8E-25 6.1E-30 190.2 15.9 263 5-280 178-459 (459)
58 KOG0283 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 201.1 19.9 237 37-285 265-579 (712)
59 KOG0305 Anaphase promoting com 99.9 3.2E-24 6.9E-29 193.0 22.5 266 7-287 190-466 (484)
60 KOG0299 U3 snoRNP-associated p 99.9 4.6E-24 1E-28 185.0 19.6 239 12-297 159-425 (479)
61 KOG0318 WD40 repeat stress pro 99.9 3.8E-23 8.3E-28 182.0 25.1 231 7-284 118-352 (603)
62 KOG0313 Microtubule binding pr 99.9 5.8E-24 1.3E-28 180.6 19.3 228 11-282 163-418 (423)
63 KOG0282 mRNA splicing factor [ 99.9 4E-25 8.7E-30 192.6 12.0 239 35-284 210-464 (503)
64 KOG0310 Conserved WD40 repeat- 99.9 3.9E-24 8.5E-29 186.7 17.2 200 37-281 66-267 (487)
65 KOG0296 Angio-associated migra 99.9 9.8E-23 2.1E-27 172.3 23.6 238 36-284 61-358 (399)
66 KOG0640 mRNA cleavage stimulat 99.9 6E-24 1.3E-28 176.5 15.9 211 36-286 109-339 (430)
67 PTZ00420 coronin; Provisional 99.9 1.2E-22 2.7E-27 189.1 26.6 186 57-283 50-249 (568)
68 KOG1332 Vesicle coat complex C 99.9 5.9E-24 1.3E-28 171.2 15.3 224 34-282 6-241 (299)
69 KOG0274 Cdc4 and related F-box 99.9 2E-23 4.4E-28 193.6 20.5 218 12-283 223-442 (537)
70 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.8E-27 168.9 23.0 252 18-283 37-304 (311)
71 PTZ00421 coronin; Provisional 99.9 2.1E-22 4.6E-27 186.3 26.9 204 41-284 22-247 (493)
72 KOG0646 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 180.5 19.5 221 18-284 62-309 (476)
73 KOG0643 Translation initiation 99.9 6.3E-23 1.4E-27 167.2 20.4 211 33-284 4-319 (327)
74 KOG0300 WD40 repeat-containing 99.9 2E-23 4.4E-28 173.9 17.2 234 9-290 162-436 (481)
75 KOG0292 Vesicle coat complex C 99.9 1.8E-23 3.9E-28 193.6 18.3 198 40-282 10-236 (1202)
76 KOG0301 Phospholipase A2-activ 99.9 5.8E-23 1.2E-27 186.0 20.5 218 12-287 76-293 (745)
77 KOG0276 Vesicle coat complex C 99.9 7.7E-23 1.7E-27 183.3 20.5 205 37-284 11-217 (794)
78 KOG0973 Histone transcription 99.9 9E-23 1.9E-27 192.9 22.1 268 10-284 28-357 (942)
79 KOG0641 WD40 repeat protein [G 99.9 4.1E-22 8.8E-27 159.1 22.2 211 37-285 87-306 (350)
80 KOG0772 Uncharacterized conser 99.9 3.3E-23 7.2E-28 182.0 17.1 207 37-282 266-487 (641)
81 KOG0289 mRNA splicing factor [ 99.9 7.8E-23 1.7E-27 176.3 18.8 200 41-283 221-420 (506)
82 KOG2445 Nuclear pore complex c 99.9 8.1E-22 1.8E-26 163.6 23.6 243 32-281 6-317 (361)
83 KOG1407 WD40 repeat protein [F 99.9 3.1E-22 6.7E-27 162.7 20.1 221 10-273 35-293 (313)
84 KOG0274 Cdc4 and related F-box 99.9 1.2E-22 2.7E-27 188.4 20.2 218 12-284 266-484 (537)
85 KOG0268 Sof1-like rRNA process 99.9 2.8E-23 6E-28 175.6 13.8 233 36-282 63-345 (433)
86 KOG1036 Mitotic spindle checkp 99.9 1E-21 2.3E-26 163.0 22.3 229 36-282 10-262 (323)
87 KOG0310 Conserved WD40 repeat- 99.9 1.3E-21 2.8E-26 171.0 23.7 200 36-280 107-307 (487)
88 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.7E-26 162.5 21.6 226 35-272 50-294 (323)
89 KOG1332 Vesicle coat complex C 99.9 2.4E-22 5.2E-27 162.0 16.7 236 12-282 28-286 (299)
90 KOG0289 mRNA splicing factor [ 99.9 1.7E-21 3.7E-26 168.1 22.6 226 8-281 276-505 (506)
91 KOG0301 Phospholipase A2-activ 99.9 2.6E-22 5.6E-27 181.8 18.3 222 7-282 25-249 (745)
92 KOG0308 Conserved WD40 repeat- 99.9 4.2E-23 9.2E-28 185.7 13.1 216 36-283 18-244 (735)
93 KOG0264 Nucleosome remodeling 99.9 3.7E-22 8.1E-27 173.0 18.1 210 38-284 123-349 (422)
94 KOG0300 WD40 repeat-containing 99.9 2E-22 4.4E-27 168.0 15.6 212 36-289 145-393 (481)
95 KOG0267 Microtubule severing p 99.9 2.4E-23 5.2E-28 189.2 9.0 202 36-282 25-226 (825)
96 KOG0275 Conserved WD40 repeat- 99.9 1.5E-22 3.2E-27 169.2 12.5 202 37-283 211-424 (508)
97 KOG0306 WD40-repeat-containing 99.9 1.2E-21 2.7E-26 178.8 18.6 201 36-281 451-663 (888)
98 KOG0772 Uncharacterized conser 99.9 1.2E-21 2.7E-26 172.2 17.5 219 34-287 162-399 (641)
99 KOG0308 Conserved WD40 repeat- 99.9 1.2E-21 2.5E-26 176.5 17.0 232 13-284 43-287 (735)
100 KOG0639 Transducin-like enhanc 99.9 1.1E-21 2.5E-26 172.0 14.9 232 39-281 465-703 (705)
101 KOG0302 Ribosome Assembly prot 99.9 6.5E-21 1.4E-25 162.0 18.4 209 37-284 149-380 (440)
102 KOG0321 WD40 repeat-containing 99.9 5.3E-21 1.2E-25 171.9 18.5 246 34-283 95-392 (720)
103 KOG0267 Microtubule severing p 99.9 2.1E-22 4.5E-27 183.1 9.3 195 35-274 66-260 (825)
104 KOG0269 WD40 repeat-containing 99.9 1.7E-21 3.8E-26 178.4 15.2 222 17-279 110-337 (839)
105 KOG0293 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 161.4 19.3 202 36-283 221-426 (519)
106 KOG2096 WD40 repeat protein [G 99.9 2.4E-20 5.3E-25 155.6 19.8 207 36-284 83-310 (420)
107 KOG0306 WD40-repeat-containing 99.9 4.7E-20 1E-24 168.6 22.0 214 33-282 367-580 (888)
108 KOG0269 WD40 repeat-containing 99.9 2.3E-21 5.1E-26 177.5 13.4 208 42-293 90-307 (839)
109 KOG0302 Ribosome Assembly prot 99.9 1.6E-20 3.5E-25 159.6 16.9 205 36-278 208-435 (440)
110 KOG0640 mRNA cleavage stimulat 99.9 1.8E-20 3.8E-25 155.9 16.7 207 36-282 169-426 (430)
111 KOG0288 WD40 repeat protein Ti 99.9 5.7E-21 1.2E-25 164.0 13.6 237 37-284 173-419 (459)
112 KOG1034 Transcriptional repres 99.9 6.9E-20 1.5E-24 153.4 18.7 242 37-282 87-383 (385)
113 KOG1408 WD40 repeat protein [F 99.9 2E-20 4.3E-25 170.2 16.4 240 37-283 457-714 (1080)
114 KOG0643 Translation initiation 99.8 1.1E-19 2.3E-24 148.5 17.6 198 76-283 5-221 (327)
115 KOG0270 WD40 repeat-containing 99.8 4.3E-20 9.4E-25 159.9 16.0 213 36-290 240-457 (463)
116 KOG0642 Cell-cycle nuclear pro 99.8 5.8E-20 1.3E-24 163.3 15.8 247 34-283 289-562 (577)
117 KOG0283 WD40 repeat-containing 99.8 6.2E-20 1.4E-24 169.8 16.7 199 36-241 366-577 (712)
118 KOG1274 WD40 repeat protein [G 99.8 6.2E-19 1.3E-23 164.4 22.7 211 36-283 10-263 (933)
119 KOG0973 Histone transcription 99.8 5.9E-19 1.3E-23 167.3 22.3 247 33-284 7-314 (942)
120 KOG0270 WD40 repeat-containing 99.8 2.3E-19 5E-24 155.5 17.4 200 43-285 177-407 (463)
121 KOG4283 Transcription-coupled 99.8 4.4E-19 9.5E-24 146.8 18.1 220 36-299 40-294 (397)
122 KOG4283 Transcription-coupled 99.8 6.5E-19 1.4E-23 145.7 18.6 240 4-281 108-364 (397)
123 KOG0278 Serine/threonine kinas 99.8 7.2E-20 1.6E-24 148.2 10.7 203 32-282 7-213 (334)
124 KOG2106 Uncharacterized conser 99.8 7.4E-18 1.6E-22 148.3 23.9 231 40-280 247-519 (626)
125 KOG0641 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 135.6 20.9 203 36-282 133-349 (350)
126 KOG2919 Guanine nucleotide-bin 99.8 7.3E-19 1.6E-23 147.1 14.8 217 16-273 132-361 (406)
127 KOG0299 U3 snoRNP-associated p 99.8 2.1E-18 4.5E-23 150.2 17.7 205 33-284 136-358 (479)
128 KOG0303 Actin-binding protein 99.8 1.9E-17 4E-22 141.9 18.6 204 36-284 78-296 (472)
129 KOG0305 Anaphase promoting com 99.8 1.7E-17 3.7E-22 149.7 19.0 195 42-284 180-378 (484)
130 KOG4328 WD40 protein [Function 99.8 1.3E-17 2.9E-22 145.1 16.3 204 37-282 184-399 (498)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.9E-16 1.5E-20 134.5 26.5 257 13-284 7-281 (300)
132 KOG2096 WD40 repeat protein [G 99.8 2.8E-17 6E-22 137.5 16.5 211 36-280 184-400 (420)
133 KOG0322 G-protein beta subunit 99.8 2E-17 4.2E-22 135.1 13.8 243 36-281 11-322 (323)
134 KOG0650 WD40 repeat nucleolar 99.8 7.7E-17 1.7E-21 144.5 18.6 241 35-280 396-678 (733)
135 KOG1273 WD40 repeat protein [G 99.8 1.5E-16 3.4E-21 132.9 19.1 199 42-282 26-226 (405)
136 KOG0646 WD40 repeat protein [G 99.8 3.7E-17 8E-22 142.6 15.9 220 17-265 103-332 (476)
137 KOG1063 RNA polymerase II elon 99.7 2E-16 4.4E-21 143.9 20.9 273 8-284 280-650 (764)
138 KOG4328 WD40 protein [Function 99.7 7.7E-17 1.7E-21 140.4 16.8 216 36-282 231-495 (498)
139 KOG0321 WD40 repeat-containing 99.7 8.7E-17 1.9E-21 145.1 17.6 229 43-284 53-303 (720)
140 KOG1063 RNA polymerase II elon 99.7 9.4E-17 2E-21 146.0 17.5 214 36-282 522-763 (764)
141 KOG0647 mRNA export protein (c 99.7 1.2E-16 2.5E-21 132.8 15.8 79 80-160 26-104 (347)
142 KOG1539 WD repeat protein [Gen 99.7 2.2E-16 4.9E-21 146.2 19.1 198 40-284 449-650 (910)
143 KOG0644 Uncharacterized conser 99.7 9.7E-18 2.1E-22 155.1 10.0 229 36-282 187-426 (1113)
144 KOG0290 Conserved WD40 repeat- 99.7 2.5E-16 5.5E-21 130.3 15.6 212 37-286 94-322 (364)
145 KOG1274 WD40 repeat protein [G 99.7 7.1E-16 1.5E-20 144.3 20.2 202 36-280 93-298 (933)
146 KOG1408 WD40 repeat protein [F 99.7 2.7E-15 5.9E-20 137.1 23.3 239 42-284 327-673 (1080)
147 KOG0268 Sof1-like rRNA process 99.7 3.1E-17 6.6E-22 139.2 10.0 163 41-247 189-352 (433)
148 KOG0771 Prolactin regulatory e 99.7 3.5E-16 7.6E-21 135.2 16.6 200 43-283 148-355 (398)
149 KOG0307 Vesicle coat complex C 99.7 6.9E-17 1.5E-21 154.2 13.2 235 40-284 65-329 (1049)
150 KOG0294 WD40 repeat-containing 99.7 3.4E-15 7.3E-20 124.9 21.4 236 10-260 56-305 (362)
151 KOG1009 Chromatin assembly com 99.7 1.5E-15 3.3E-20 130.6 19.0 265 12-282 31-372 (434)
152 KOG2048 WD40 repeat protein [G 99.7 2.8E-15 6.2E-20 136.2 21.1 230 18-284 48-277 (691)
153 KOG1273 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 124.9 18.8 241 32-282 58-322 (405)
154 KOG1539 WD repeat protein [Gen 99.7 1.2E-15 2.5E-20 141.5 16.5 198 41-284 397-608 (910)
155 KOG2106 Uncharacterized conser 99.7 4.3E-14 9.3E-19 124.9 25.3 258 16-284 179-479 (626)
156 KOG0639 Transducin-like enhanc 99.7 9.9E-16 2.1E-20 135.0 15.0 238 37-283 417-664 (705)
157 KOG1007 WD repeat protein TSSC 99.7 5.1E-15 1.1E-19 122.5 18.3 223 17-282 93-361 (370)
158 KOG2048 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 131.5 23.0 197 41-282 27-233 (691)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.3E-14 5E-19 124.9 23.6 186 51-284 1-189 (300)
160 COG2319 FOG: WD40 repeat [Gene 99.7 7E-14 1.5E-18 125.5 26.3 225 15-284 85-316 (466)
161 KOG2055 WD40 repeat protein [G 99.7 2.1E-14 4.7E-19 125.4 21.0 202 38-283 212-418 (514)
162 PRK01742 tolB translocation pr 99.6 5.5E-14 1.2E-18 129.5 22.5 222 7-281 174-400 (429)
163 KOG4378 Nuclear protein COP1 [ 99.6 6.8E-15 1.5E-19 129.6 14.7 199 42-285 82-283 (673)
164 KOG1587 Cytoplasmic dynein int 99.6 4.2E-14 9.2E-19 131.1 20.7 247 37-284 178-474 (555)
165 KOG1538 Uncharacterized conser 99.6 7.1E-14 1.5E-18 127.2 20.5 239 41-283 14-294 (1081)
166 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 129.5 14.8 134 26-160 38-180 (758)
167 KOG1188 WD40 repeat protein [G 99.6 3.2E-14 6.9E-19 120.2 16.4 194 52-284 41-244 (376)
168 COG2319 FOG: WD40 repeat [Gene 99.6 1E-12 2.2E-17 117.9 27.5 230 10-285 127-362 (466)
169 KOG1445 Tumor-specific antigen 99.6 7.2E-15 1.6E-19 132.9 12.0 201 40-282 628-844 (1012)
170 KOG0303 Actin-binding protein 99.6 1.6E-14 3.4E-19 124.1 13.5 166 76-282 76-249 (472)
171 KOG1188 WD40 repeat protein [G 99.6 2.3E-14 5.1E-19 121.0 14.0 244 12-284 89-348 (376)
172 KOG4227 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 117.2 19.9 263 11-281 74-386 (609)
173 KOG4378 Nuclear protein COP1 [ 99.6 2.1E-13 4.5E-18 120.4 19.0 185 36-264 118-305 (673)
174 KOG2445 Nuclear pore complex c 99.6 3E-13 6.5E-18 113.0 18.2 200 78-285 10-259 (361)
175 KOG1523 Actin-related protein 99.6 2.2E-13 4.8E-18 114.3 17.5 207 41-285 12-239 (361)
176 KOG1445 Tumor-specific antigen 99.6 1.6E-14 3.5E-19 130.6 10.9 156 47-283 587-751 (1012)
177 KOG2055 WD40 repeat protein [G 99.6 4.9E-13 1.1E-17 117.1 18.6 199 39-282 257-512 (514)
178 PRK11028 6-phosphogluconolacto 99.6 3.3E-12 7.1E-17 113.7 24.7 211 41-283 81-305 (330)
179 KOG2919 Guanine nucleotide-bin 99.6 6E-13 1.3E-17 111.9 18.3 217 42-295 52-294 (406)
180 KOG0650 WD40 repeat nucleolar 99.6 8.9E-14 1.9E-18 125.1 14.2 198 38-280 520-733 (733)
181 KOG1517 Guanine nucleotide bin 99.5 8.9E-13 1.9E-17 125.5 19.8 210 37-284 1062-1289(1387)
182 KOG1334 WD40 repeat protein [G 99.5 4.7E-14 1E-18 124.2 10.5 244 36-283 139-467 (559)
183 KOG0649 WD40 repeat protein [G 99.5 2.8E-12 6.1E-17 104.1 19.5 204 36-284 59-276 (325)
184 KOG0642 Cell-cycle nuclear pro 99.5 4E-13 8.7E-18 120.2 15.6 100 12-112 311-426 (577)
185 KOG1034 Transcriptional repres 99.5 1.4E-12 3E-17 109.9 17.4 161 37-283 36-212 (385)
186 KOG0649 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 105.3 17.2 196 42-284 13-237 (325)
187 PF08662 eIF2A: Eukaryotic tra 99.5 4.7E-12 1E-16 103.9 20.0 67 219-287 109-184 (194)
188 PRK11028 6-phosphogluconolacto 99.5 1.6E-11 3.5E-16 109.3 24.3 233 16-284 11-260 (330)
189 KOG2394 WD40 protein DMR-N9 [G 99.5 8.4E-13 1.8E-17 117.6 15.3 173 49-261 183-383 (636)
190 KOG0644 Uncharacterized conser 99.5 1.2E-13 2.6E-18 128.5 9.6 259 6-282 203-468 (1113)
191 KOG0290 Conserved WD40 repeat- 99.5 5.2E-13 1.1E-17 110.8 12.0 125 36-160 147-320 (364)
192 KOG0307 Vesicle coat complex C 99.5 5.1E-13 1.1E-17 128.1 13.0 236 43-283 10-285 (1049)
193 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4E-17 123.4 16.3 203 43-283 1169-1382(1387)
194 KOG1007 WD repeat protein TSSC 99.4 4.3E-12 9.3E-17 105.4 14.1 188 36-239 167-360 (370)
195 KOG4227 WD40 repeat protein [G 99.4 1.3E-11 2.8E-16 106.4 17.5 237 34-285 51-325 (609)
196 KOG1009 Chromatin assembly com 99.4 2.3E-12 5.1E-17 111.2 12.4 177 82-282 14-195 (434)
197 PRK03629 tolB translocation pr 99.4 2.5E-10 5.3E-15 105.2 25.8 220 14-284 176-408 (429)
198 PRK05137 tolB translocation pr 99.4 1.1E-10 2.5E-15 107.8 23.4 216 16-283 181-413 (435)
199 PRK02889 tolB translocation pr 99.4 8E-11 1.7E-15 108.5 22.3 194 36-274 192-392 (427)
200 KOG1272 WD40-repeat-containing 99.4 8.8E-13 1.9E-17 115.6 8.7 197 39-284 129-325 (545)
201 KOG2394 WD40 protein DMR-N9 [G 99.4 2.1E-11 4.6E-16 108.8 16.4 219 42-283 126-363 (636)
202 PRK04922 tolB translocation pr 99.4 1.3E-10 2.8E-15 107.3 22.1 218 16-283 183-412 (433)
203 KOG3881 Uncharacterized conser 99.4 8.3E-11 1.8E-15 101.4 18.9 207 36-283 102-321 (412)
204 KOG1587 Cytoplasmic dynein int 99.4 6.6E-11 1.4E-15 110.1 19.5 239 7-284 255-518 (555)
205 KOG1524 WD40 repeat-containing 99.4 1E-11 2.3E-16 110.8 13.1 182 36-278 101-282 (737)
206 KOG2111 Uncharacterized conser 99.4 5.9E-10 1.3E-14 93.9 22.6 220 41-284 7-258 (346)
207 KOG1524 WD40 repeat-containing 99.3 2E-11 4.3E-16 109.0 13.8 219 36-277 11-250 (737)
208 KOG1963 WD40 repeat protein [G 99.3 8.6E-10 1.9E-14 103.7 24.7 144 7-159 166-323 (792)
209 KOG2110 Uncharacterized conser 99.3 1.6E-09 3.6E-14 92.9 23.5 195 41-283 48-249 (391)
210 KOG0974 WD-repeat protein WDR6 99.3 1.1E-10 2.4E-15 111.3 17.8 196 41-283 89-289 (967)
211 PRK01742 tolB translocation pr 99.3 8.5E-11 1.8E-15 108.4 16.5 192 18-263 229-426 (429)
212 KOG2139 WD40 repeat protein [G 99.3 3E-10 6.5E-15 97.2 17.5 192 42-277 101-306 (445)
213 KOG2110 Uncharacterized conser 99.3 3.6E-09 7.8E-14 90.8 23.2 202 37-284 85-332 (391)
214 KOG1963 WD40 repeat protein [G 99.3 1.4E-10 3E-15 109.0 15.5 246 36-292 13-292 (792)
215 KOG1538 Uncharacterized conser 99.3 1.8E-10 3.9E-15 105.4 15.7 189 83-285 14-214 (1081)
216 KOG1310 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 103.7 14.0 216 11-245 66-308 (758)
217 KOG1523 Actin-related protein 99.2 1.1E-09 2.3E-14 92.4 17.5 201 36-262 52-259 (361)
218 KOG2321 WD40 repeat protein [G 99.2 4.6E-10 9.9E-15 101.2 15.9 200 45-284 139-345 (703)
219 KOG1240 Protein kinase contain 99.2 1.9E-09 4.2E-14 104.6 20.9 209 37-284 1046-1275(1431)
220 TIGR02800 propeller_TolB tol-p 99.2 4.3E-09 9.3E-14 96.7 21.8 190 37-275 187-387 (417)
221 KOG0974 WD-repeat protein WDR6 99.2 1.2E-10 2.6E-15 111.1 11.5 131 19-159 157-289 (967)
222 KOG0280 Uncharacterized conser 99.2 1E-09 2.3E-14 91.5 15.5 117 42-160 124-243 (339)
223 KOG0322 G-protein beta subunit 99.2 7E-11 1.5E-15 97.1 7.8 117 36-157 202-322 (323)
224 KOG1354 Serine/threonine prote 99.2 8.1E-10 1.8E-14 94.0 14.2 208 42-283 28-302 (433)
225 KOG2321 WD40 repeat protein [G 99.2 1.7E-09 3.8E-14 97.5 17.0 210 36-283 48-303 (703)
226 KOG4547 WD40 repeat-containing 99.1 6.7E-09 1.5E-13 94.0 19.6 189 49-283 3-221 (541)
227 KOG1240 Protein kinase contain 99.1 1.7E-09 3.6E-14 105.1 16.3 183 70-282 1037-1225(1431)
228 PF08662 eIF2A: Eukaryotic tra 99.1 2.1E-09 4.5E-14 88.2 14.5 112 37-158 57-179 (194)
229 PRK00178 tolB translocation pr 99.1 2.8E-08 6.1E-13 91.8 23.2 200 36-284 195-408 (430)
230 PRK05137 tolB translocation pr 99.1 3.9E-08 8.5E-13 90.9 23.5 174 61-283 182-367 (435)
231 PRK03629 tolB translocation pr 99.1 8E-09 1.7E-13 95.3 18.3 173 42-262 245-427 (429)
232 KOG0771 Prolactin regulatory e 99.1 1.6E-09 3.5E-14 94.3 12.7 154 85-283 148-312 (398)
233 KOG2111 Uncharacterized conser 99.1 1.2E-07 2.6E-12 80.2 23.1 230 9-282 63-322 (346)
234 KOG3881 Uncharacterized conser 99.1 7.6E-09 1.6E-13 89.5 15.1 182 40-264 149-343 (412)
235 KOG2695 WD40 repeat protein [G 99.1 9.9E-10 2.2E-14 93.6 9.4 178 45-262 217-402 (425)
236 KOG1272 WD40-repeat-containing 99.0 6.7E-10 1.5E-14 97.8 8.0 116 41-161 211-326 (545)
237 PRK04792 tolB translocation pr 99.0 1E-07 2.2E-12 88.3 22.4 196 40-284 218-427 (448)
238 KOG1409 Uncharacterized conser 99.0 2.6E-08 5.5E-13 85.0 15.5 248 36-291 21-279 (404)
239 PRK01029 tolB translocation pr 99.0 2.6E-07 5.6E-12 85.1 23.3 205 40-284 185-405 (428)
240 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.4E-14 109.7 7.9 186 6-249 2217-2407(2439)
241 PF00400 WD40: WD domain, G-be 99.0 2.1E-09 4.6E-14 63.9 5.7 39 242-280 1-39 (39)
242 PRK02889 tolB translocation pr 98.9 1.5E-07 3.1E-12 86.9 20.3 177 61-284 176-362 (427)
243 KOG1354 Serine/threonine prote 98.9 5.1E-08 1.1E-12 83.3 14.1 215 36-279 161-431 (433)
244 PF02239 Cytochrom_D1: Cytochr 98.9 9.8E-07 2.1E-11 79.5 23.4 256 16-284 57-349 (369)
245 KOG1064 RAVE (regulator of V-A 98.9 7.7E-09 1.7E-13 103.9 10.5 186 41-283 2210-2399(2439)
246 KOG4497 Uncharacterized conser 98.9 4.2E-07 9.1E-12 77.4 18.7 243 42-285 51-394 (447)
247 PRK04922 tolB translocation pr 98.9 1.9E-07 4.1E-12 86.3 18.4 172 41-262 249-432 (433)
248 KOG0309 Conserved WD40 repeat- 98.8 1.2E-08 2.6E-13 94.8 8.8 215 36-282 111-339 (1081)
249 KOG2139 WD40 repeat protein [G 98.8 1.5E-07 3.2E-12 81.0 14.6 166 83-281 100-267 (445)
250 KOG1409 Uncharacterized conser 98.8 4.4E-08 9.5E-13 83.7 11.2 82 74-159 190-271 (404)
251 COG5170 CDC55 Serine/threonine 98.8 4.6E-08 9.9E-13 82.6 11.0 210 40-283 27-310 (460)
252 KOG4714 Nucleoporin [Nuclear s 98.8 4.8E-08 1E-12 80.5 10.4 63 221-283 191-255 (319)
253 TIGR02800 propeller_TolB tol-p 98.8 1.1E-06 2.5E-11 80.6 20.8 173 62-283 171-355 (417)
254 KOG1275 PAB-dependent poly(A) 98.8 3.8E-07 8.1E-12 86.8 16.4 182 50-280 146-340 (1118)
255 KOG4497 Uncharacterized conser 98.8 1.4E-07 3E-12 80.2 12.2 207 44-278 13-236 (447)
256 KOG4532 WD40-like repeat conta 98.7 1.1E-06 2.4E-11 73.0 16.2 190 50-282 83-282 (344)
257 PLN02919 haloacid dehalogenase 98.7 5.6E-06 1.2E-10 84.1 24.9 222 42-284 626-890 (1057)
258 PF10282 Lactonase: Lactonase, 98.7 3.3E-05 7.1E-10 69.3 26.6 240 43-283 40-323 (345)
259 PRK04043 tolB translocation pr 98.6 1.4E-05 3.1E-10 73.3 21.9 192 41-283 189-401 (419)
260 KOG0280 Uncharacterized conser 98.6 7.2E-06 1.6E-10 69.0 17.7 187 60-284 45-243 (339)
261 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00016 3.5E-09 64.4 27.2 256 5-284 15-332 (352)
262 KOG3914 WD repeat protein WDR4 98.6 1.4E-06 3E-11 76.0 13.7 165 39-248 62-231 (390)
263 PRK00178 tolB translocation pr 98.6 2.1E-05 4.6E-10 72.7 22.7 174 62-284 180-365 (430)
264 PF15492 Nbas_N: Neuroblastoma 98.6 2.8E-05 6.1E-10 65.4 20.5 192 43-284 47-261 (282)
265 PRK04792 tolB translocation pr 98.6 5.7E-06 1.2E-10 76.8 18.2 172 42-262 264-446 (448)
266 KOG4190 Uncharacterized conser 98.6 1.4E-07 3.1E-12 85.2 7.1 203 35-281 731-947 (1034)
267 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.7E-12 55.5 5.2 32 36-67 8-39 (39)
268 PRK01029 tolB translocation pr 98.6 8.4E-06 1.8E-10 75.2 18.8 180 41-264 232-426 (428)
269 PF02239 Cytochrom_D1: Cytochr 98.5 6.8E-05 1.5E-09 67.7 22.8 191 55-284 10-204 (369)
270 COG2706 3-carboxymuconate cycl 98.5 0.00063 1.4E-08 59.1 26.7 252 36-290 36-329 (346)
271 KOG2695 WD40 repeat protein [G 98.5 3.8E-07 8.3E-12 78.1 7.0 124 36-160 243-378 (425)
272 KOG0309 Conserved WD40 repeat- 98.5 8.2E-07 1.8E-11 82.9 9.6 203 40-284 25-234 (1081)
273 KOG1334 WD40 repeat protein [G 98.5 3.2E-06 6.9E-11 75.5 12.7 209 74-283 135-425 (559)
274 KOG2315 Predicted translation 98.4 9.6E-05 2.1E-09 67.3 20.0 196 38-285 164-393 (566)
275 KOG2041 WD40 repeat protein [G 98.4 1.5E-05 3.3E-10 74.4 15.2 223 40-273 15-279 (1189)
276 COG4946 Uncharacterized protei 98.4 0.00013 2.7E-09 65.5 19.8 187 48-283 275-478 (668)
277 KOG4714 Nucleoporin [Nuclear s 98.3 3.2E-06 6.9E-11 70.0 9.0 93 63-158 161-254 (319)
278 KOG4190 Uncharacterized conser 98.3 1.9E-06 4.2E-11 78.1 8.1 169 76-283 730-907 (1034)
279 KOG3914 WD repeat protein WDR4 98.3 1.7E-06 3.6E-11 75.5 7.2 93 16-113 131-224 (390)
280 PLN02919 haloacid dehalogenase 98.3 0.00028 6.1E-09 72.0 23.9 213 39-284 568-835 (1057)
281 COG4946 Uncharacterized protei 98.2 0.00043 9.2E-09 62.2 20.3 118 36-159 356-478 (668)
282 KOG4547 WD40 repeat-containing 98.2 2.8E-05 6.1E-10 71.0 11.8 117 36-159 99-221 (541)
283 KOG1645 RING-finger-containing 98.1 8.1E-05 1.8E-09 65.3 13.8 77 36-113 190-267 (463)
284 PF04762 IKI3: IKI3 family; I 98.1 0.0014 2.9E-08 66.0 24.0 198 38-281 74-332 (928)
285 PF10282 Lactonase: Lactonase, 98.1 0.002 4.3E-08 57.8 22.7 184 40-260 144-345 (345)
286 COG5170 CDC55 Serine/threonine 98.1 4E-05 8.6E-10 65.2 10.2 124 36-161 169-312 (460)
287 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0039 8.4E-08 55.6 23.2 96 61-162 27-140 (352)
288 KOG1832 HIV-1 Vpr-binding prot 98.0 5.3E-06 1.1E-10 79.1 4.8 116 37-159 1099-1215(1516)
289 KOG1912 WD40 repeat protein [G 98.0 0.00045 9.9E-09 65.5 16.9 237 40-282 16-304 (1062)
290 KOG1008 Uncharacterized conser 98.0 5.4E-06 1.2E-10 76.5 3.6 203 40-284 57-277 (783)
291 smart00320 WD40 WD40 repeats. 98.0 3E-05 6.5E-10 44.1 5.7 39 242-280 2-40 (40)
292 KOG4532 WD40-like repeat conta 97.9 0.0022 4.8E-08 53.8 17.5 103 53-160 130-235 (344)
293 KOG2315 Predicted translation 97.9 0.0003 6.6E-09 64.2 13.3 111 39-159 270-391 (566)
294 KOG2314 Translation initiation 97.9 0.0011 2.3E-08 60.8 16.5 68 216-284 498-575 (698)
295 COG5354 Uncharacterized protei 97.9 0.0046 9.9E-08 56.2 20.2 197 40-287 174-400 (561)
296 PF08450 SGL: SMP-30/Gluconola 97.9 0.012 2.6E-07 49.9 25.2 186 42-270 42-244 (246)
297 PF11768 DUF3312: Protein of u 97.9 7.7E-05 1.7E-09 68.6 9.0 65 218-284 267-331 (545)
298 KOG1920 IkappaB kinase complex 97.9 0.0022 4.7E-08 63.8 19.2 199 40-282 69-322 (1265)
299 KOG1275 PAB-dependent poly(A) 97.8 0.00019 4.1E-09 69.1 11.5 147 49-239 185-341 (1118)
300 PF11768 DUF3312: Protein of u 97.8 0.00074 1.6E-08 62.3 14.7 90 63-159 238-330 (545)
301 KOG3617 WD40 and TPR repeat-co 97.8 0.00049 1.1E-08 65.9 13.7 108 45-159 21-132 (1416)
302 KOG0882 Cyclophilin-related pe 97.8 7.6E-05 1.7E-09 66.4 7.0 199 79-284 7-233 (558)
303 PF04762 IKI3: IKI3 family; I 97.8 0.021 4.6E-07 57.6 25.1 113 38-158 208-333 (928)
304 TIGR03300 assembly_YfgL outer 97.8 0.011 2.4E-07 53.6 21.4 217 50-283 64-298 (377)
305 TIGR03300 assembly_YfgL outer 97.7 0.0053 1.1E-07 55.7 19.2 175 52-279 191-376 (377)
306 COG2706 3-carboxymuconate cycl 97.7 0.0072 1.6E-07 52.7 18.5 194 60-284 15-223 (346)
307 KOG2066 Vacuolar assembly/sort 97.7 0.0038 8.3E-08 59.6 17.7 116 36-159 55-188 (846)
308 PF13360 PQQ_2: PQQ-like domai 97.7 0.0059 1.3E-07 51.3 17.5 196 49-284 34-232 (238)
309 KOG2041 WD40 repeat protein [G 97.7 0.001 2.2E-08 62.7 13.4 240 33-280 65-335 (1189)
310 KOG2114 Vacuolar assembly/sort 97.7 0.0088 1.9E-07 57.7 19.3 196 46-283 30-244 (933)
311 KOG1832 HIV-1 Vpr-binding prot 97.6 5.6E-05 1.2E-09 72.4 3.9 158 74-284 1094-1257(1516)
312 COG5354 Uncharacterized protei 97.6 0.0096 2.1E-07 54.2 17.3 209 41-284 73-308 (561)
313 PF08450 SGL: SMP-30/Gluconola 97.5 0.041 8.9E-07 46.6 23.3 192 44-284 4-215 (246)
314 KOG2444 WD40 repeat protein [G 97.5 0.00033 7.1E-09 57.4 6.3 64 222-285 114-180 (238)
315 smart00320 WD40 WD40 repeats. 97.4 0.00028 6.1E-09 39.8 4.1 32 36-67 9-40 (40)
316 KOG2066 Vacuolar assembly/sort 97.4 0.0055 1.2E-07 58.6 14.4 182 41-282 41-233 (846)
317 PRK04043 tolB translocation pr 97.3 0.13 2.7E-06 47.5 23.2 172 62-284 170-359 (419)
318 KOG0882 Cyclophilin-related pe 97.2 0.0025 5.3E-08 57.1 8.9 216 36-284 50-307 (558)
319 PF13360 PQQ_2: PQQ-like domai 97.1 0.07 1.5E-06 44.7 17.2 147 60-252 2-152 (238)
320 KOG2314 Translation initiation 97.0 0.073 1.6E-06 49.2 16.7 110 42-160 213-336 (698)
321 KOG2444 WD40 repeat protein [G 96.9 0.0029 6.4E-08 51.9 6.5 106 51-160 70-179 (238)
322 PF06977 SdiA-regulated: SdiA- 96.9 0.24 5.1E-06 42.2 21.0 210 36-277 18-245 (248)
323 PF06433 Me-amine-dh_H: Methyl 96.7 0.3 6.4E-06 43.2 17.5 51 233-284 270-322 (342)
324 PRK02888 nitrous-oxide reducta 96.7 0.084 1.8E-06 50.3 15.0 109 43-161 238-354 (635)
325 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.16 3.4E-06 37.2 14.2 101 42-152 2-108 (111)
326 KOG1008 Uncharacterized conser 96.5 0.00072 1.6E-08 62.9 0.4 143 7-159 72-227 (783)
327 KOG1920 IkappaB kinase complex 96.5 0.22 4.7E-06 50.3 16.7 113 43-158 199-322 (1265)
328 PF08553 VID27: VID27 cytoplas 96.4 0.065 1.4E-06 52.7 12.9 130 58-194 501-638 (794)
329 PF08553 VID27: VID27 cytoplas 96.4 0.069 1.5E-06 52.5 13.1 59 221-281 587-646 (794)
330 PF12894 Apc4_WD40: Anaphase-p 96.4 0.019 4.1E-07 35.2 5.9 30 40-69 12-41 (47)
331 PRK11138 outer membrane biogen 96.3 0.83 1.8E-05 41.7 21.1 58 222-281 335-393 (394)
332 COG0823 TolB Periplasmic compo 96.3 0.14 3.1E-06 47.1 14.1 184 40-270 193-387 (425)
333 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.28 6E-06 36.0 12.4 52 223-277 54-109 (111)
334 KOG1912 WD40 repeat protein [G 96.2 0.066 1.4E-06 51.5 11.4 237 45-284 236-508 (1062)
335 KOG3621 WD40 repeat-containing 96.2 0.062 1.3E-06 51.0 10.9 117 41-159 35-155 (726)
336 KOG1645 RING-finger-containing 96.2 0.017 3.6E-07 51.2 6.7 93 63-160 175-268 (463)
337 KOG4640 Anaphase-promoting com 96.1 0.022 4.8E-07 53.3 7.5 66 218-284 28-94 (665)
338 PF08596 Lgl_C: Lethal giant l 96.0 0.83 1.8E-05 41.7 17.4 227 40-284 2-292 (395)
339 KOG4649 PQQ (pyrrolo-quinoline 95.9 0.89 1.9E-05 38.5 16.3 62 50-112 62-123 (354)
340 PF12894 Apc4_WD40: Anaphase-p 95.9 0.033 7.1E-07 34.1 5.3 31 252-282 11-41 (47)
341 PF07433 DUF1513: Protein of u 95.9 1.1 2.3E-05 39.2 23.6 100 44-147 9-117 (305)
342 KOG2395 Protein involved in va 95.8 0.23 4.9E-06 46.0 12.6 61 221-283 440-501 (644)
343 KOG4640 Anaphase-promoting com 95.7 0.079 1.7E-06 49.7 9.3 71 40-112 21-92 (665)
344 KOG3621 WD40 repeat-containing 95.7 0.068 1.5E-06 50.7 9.0 66 218-283 84-155 (726)
345 PRK02888 nitrous-oxide reducta 95.7 0.96 2.1E-05 43.4 16.5 66 217-283 327-405 (635)
346 PF04053 Coatomer_WDAD: Coatom 95.6 1.1 2.3E-05 41.7 16.6 56 222-281 117-172 (443)
347 KOG2114 Vacuolar assembly/sort 95.6 1.7 3.8E-05 42.6 17.8 122 36-158 61-201 (933)
348 KOG2395 Protein involved in va 95.1 0.31 6.7E-06 45.1 10.7 151 36-194 329-491 (644)
349 PF15492 Nbas_N: Neuroblastoma 94.9 0.71 1.5E-05 39.4 11.8 35 127-161 228-262 (282)
350 PF04841 Vps16_N: Vps16, N-ter 94.9 3.1 6.8E-05 38.3 24.7 49 217-265 223-272 (410)
351 PF03178 CPSF_A: CPSF A subuni 94.8 2.7 5.8E-05 37.2 18.5 178 62-283 3-203 (321)
352 KOG3617 WD40 and TPR repeat-co 94.8 0.034 7.5E-07 53.9 4.1 65 218-282 67-131 (1416)
353 KOG2079 Vacuolar assembly/sort 94.4 0.17 3.7E-06 50.5 7.9 69 40-111 131-202 (1206)
354 PRK11138 outer membrane biogen 94.1 4.5 9.8E-05 36.9 21.1 103 50-162 68-182 (394)
355 KOG4499 Ca2+-binding protein R 93.9 3.4 7.4E-05 34.6 13.8 51 221-271 222-274 (310)
356 PF07433 DUF1513: Protein of u 93.9 0.2 4.2E-06 43.7 6.5 55 217-271 57-117 (305)
357 PHA02713 hypothetical protein; 93.6 4.7 0.0001 38.8 16.0 60 221-282 463-533 (557)
358 PRK13616 lipoprotein LpqB; Pro 93.4 1.5 3.2E-05 42.4 12.2 60 215-278 401-472 (591)
359 PF12234 Rav1p_C: RAVE protein 93.4 2.1 4.5E-05 41.4 12.9 114 42-157 32-155 (631)
360 PF00930 DPPIV_N: Dipeptidyl p 93.1 6.3 0.00014 35.4 15.5 107 48-158 1-131 (353)
361 PF02897 Peptidase_S9_N: Proly 93.1 3 6.6E-05 38.2 13.6 117 39-159 123-261 (414)
362 KOG2079 Vacuolar assembly/sort 92.8 0.54 1.2E-05 47.1 8.4 102 50-158 98-203 (1206)
363 PF14727 PHTB1_N: PTHB1 N-term 92.6 8.2 0.00018 35.5 21.9 57 224-282 302-360 (418)
364 PF03178 CPSF_A: CPSF A subuni 92.6 6.9 0.00015 34.5 21.3 193 42-279 29-262 (321)
365 PF08596 Lgl_C: Lethal giant l 92.6 8.2 0.00018 35.3 18.0 72 39-111 86-172 (395)
366 PF10313 DUF2415: Uncharacteri 92.1 0.58 1.3E-05 27.9 4.8 34 253-286 1-37 (43)
367 KOG4649 PQQ (pyrrolo-quinoline 91.8 7.4 0.00016 33.2 13.5 32 218-249 101-132 (354)
368 KOG4441 Proteins containing BT 91.8 9.1 0.0002 36.9 15.3 96 50-152 332-440 (571)
369 PF10313 DUF2415: Uncharacteri 91.3 0.72 1.6E-05 27.5 4.6 31 82-112 1-33 (43)
370 COG0823 TolB Periplasmic compo 91.1 1.6 3.5E-05 40.3 9.1 103 42-149 240-346 (425)
371 PF00930 DPPIV_N: Dipeptidyl p 90.5 0.77 1.7E-05 41.3 6.4 52 231-284 22-73 (353)
372 PF00780 CNH: CNH domain; Int 90.3 5.6 0.00012 34.1 11.5 107 49-159 5-123 (275)
373 PF14870 PSII_BNR: Photosynthe 90.3 12 0.00026 32.9 13.5 127 20-149 125-253 (302)
374 PF07569 Hira: TUP1-like enhan 90.3 2.1 4.6E-05 35.7 8.4 61 221-282 21-95 (219)
375 KOG4441 Proteins containing BT 90.2 18 0.0004 34.9 15.9 99 48-152 282-393 (571)
376 TIGR02276 beta_rpt_yvtn 40-res 89.9 2.5 5.4E-05 24.4 6.4 40 221-261 2-42 (42)
377 COG3391 Uncharacterized conser 89.7 16 0.00034 33.3 20.3 182 41-263 117-309 (381)
378 PF04841 Vps16_N: Vps16, N-ter 88.8 19 0.00042 33.1 17.5 30 252-281 216-245 (410)
379 COG3391 Uncharacterized conser 88.7 18 0.0004 32.8 22.7 198 42-283 76-284 (381)
380 PF00780 CNH: CNH domain; Int 88.1 16 0.00034 31.2 18.1 115 40-159 36-166 (275)
381 COG3490 Uncharacterized protei 87.7 1.8 3.9E-05 37.3 6.1 61 217-279 120-186 (366)
382 PF12234 Rav1p_C: RAVE protein 87.6 19 0.00041 35.0 13.6 61 219-281 83-155 (631)
383 PF06977 SdiA-regulated: SdiA- 87.1 14 0.00031 31.4 11.4 105 37-146 115-239 (248)
384 KOG1897 Damage-specific DNA bi 86.7 39 0.00084 34.3 19.8 113 40-160 775-900 (1096)
385 PF14583 Pectate_lyase22: Olig 85.8 27 0.00059 31.7 16.5 63 219-282 291-381 (386)
386 PF14727 PHTB1_N: PTHB1 N-term 85.0 32 0.00069 31.8 17.9 61 222-283 145-205 (418)
387 PHA02713 hypothetical protein; 84.5 17 0.00038 34.9 11.9 23 221-243 512-536 (557)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 84.5 12 0.00026 34.5 10.2 39 41-79 309-347 (415)
389 PF02897 Peptidase_S9_N: Proly 84.2 5.9 0.00013 36.3 8.4 67 218-286 131-214 (414)
390 TIGR02276 beta_rpt_yvtn 40-res 83.6 6.3 0.00014 22.6 6.3 30 49-78 1-31 (42)
391 PRK13616 lipoprotein LpqB; Pro 83.4 14 0.00031 35.7 10.8 110 42-157 399-524 (591)
392 KOG2280 Vacuolar assembly/sort 83.4 49 0.0011 32.6 15.0 32 218-249 224-255 (829)
393 KOG2377 Uncharacterized conser 83.2 8.7 0.00019 35.4 8.5 113 39-157 66-184 (657)
394 PF07569 Hira: TUP1-like enhan 83.1 10 0.00022 31.6 8.6 65 45-111 16-94 (219)
395 PF08728 CRT10: CRT10; InterP 82.9 29 0.00062 34.3 12.5 68 214-281 167-245 (717)
396 KOG4499 Ca2+-binding protein R 82.6 10 0.00023 31.8 8.1 54 45-98 217-270 (310)
397 KOG1900 Nuclear pore complex, 82.5 31 0.00067 36.1 12.8 42 249-290 239-280 (1311)
398 KOG1916 Nuclear protein, conta 82.4 0.56 1.2E-05 46.2 0.9 63 220-283 193-266 (1283)
399 PF07676 PD40: WD40-like Beta 81.4 7.7 0.00017 22.0 5.5 29 251-279 7-38 (39)
400 PF14761 HPS3_N: Hermansky-Pud 81.1 30 0.00065 28.6 12.9 48 52-101 29-78 (215)
401 PF10168 Nup88: Nuclear pore c 80.0 18 0.0004 35.9 10.3 75 37-112 82-179 (717)
402 PHA03098 kelch-like protein; P 79.6 58 0.0013 31.0 17.0 60 49-112 293-366 (534)
403 PF08728 CRT10: CRT10; InterP 79.3 49 0.0011 32.7 12.7 121 36-157 99-245 (717)
404 KOG4460 Nuclear pore complex, 79.0 33 0.00071 32.4 10.8 32 36-68 100-131 (741)
405 KOG1983 Tomosyn and related SN 78.1 69 0.0015 33.3 14.0 33 36-68 32-64 (993)
406 PF14583 Pectate_lyase22: Olig 77.4 57 0.0012 29.7 13.2 92 67-161 16-113 (386)
407 PF12657 TFIIIC_delta: Transcr 77.1 27 0.00059 27.8 9.0 29 130-158 87-121 (173)
408 KOG3630 Nuclear pore complex, 75.7 9.4 0.0002 39.1 6.9 115 40-158 101-228 (1405)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 75.5 52 0.0011 30.4 11.3 31 130-160 309-339 (415)
410 PF05694 SBP56: 56kDa selenium 71.6 41 0.00089 31.1 9.4 118 43-160 184-344 (461)
411 PF10647 Gmad1: Lipoprotein Lp 70.7 66 0.0014 27.4 11.8 114 41-158 25-144 (253)
412 COG3386 Gluconolactonase [Carb 69.6 80 0.0017 27.9 18.4 50 221-271 223-275 (307)
413 COG5167 VID27 Protein involved 69.6 85 0.0018 29.8 11.0 118 34-157 461-590 (776)
414 PF11715 Nup160: Nucleoporin N 69.1 16 0.00035 34.9 6.9 64 221-284 157-250 (547)
415 smart00564 PQQ beta-propeller 68.6 14 0.00031 19.8 4.0 23 224-246 8-30 (33)
416 smart00036 CNH Domain found in 68.5 82 0.0018 27.6 12.4 106 50-157 12-130 (302)
417 PF07995 GSDH: Glucose / Sorbo 68.2 87 0.0019 27.8 10.9 57 221-277 270-330 (331)
418 PF11715 Nup160: Nucleoporin N 67.6 15 0.00033 35.1 6.4 35 41-75 216-254 (547)
419 COG3386 Gluconolactonase [Carb 67.4 89 0.0019 27.6 11.6 118 41-158 112-243 (307)
420 cd00216 PQQ_DH Dehydrogenases 67.4 1.1E+02 0.0025 28.8 18.1 62 51-114 61-130 (488)
421 KOG2377 Uncharacterized conser 66.0 1.2E+02 0.0025 28.5 14.5 158 84-282 25-185 (657)
422 KOG3630 Nuclear pore complex, 65.0 5.8 0.00013 40.5 3.0 59 225-283 171-229 (1405)
423 KOG1916 Nuclear protein, conta 65.0 5 0.00011 40.0 2.5 70 41-111 185-264 (1283)
424 PF03088 Str_synth: Strictosid 64.9 21 0.00044 25.1 5.0 42 228-270 33-74 (89)
425 PF07995 GSDH: Glucose / Sorbo 64.6 37 0.00079 30.2 7.8 48 42-91 4-58 (331)
426 PF05096 Glu_cyclase_2: Glutam 64.1 95 0.0021 26.7 12.7 58 222-282 100-157 (264)
427 PF06433 Me-amine-dh_H: Methyl 63.3 1.1E+02 0.0024 27.3 18.1 137 20-160 67-215 (342)
428 PRK10115 protease 2; Provision 63.2 1.6E+02 0.0036 29.2 21.0 115 40-158 127-255 (686)
429 TIGR02608 delta_60_rpt delta-6 61.9 30 0.00066 21.8 4.9 18 42-59 3-20 (55)
430 TIGR02604 Piru_Ver_Nterm putat 61.5 1.2E+02 0.0027 27.2 16.7 41 232-273 164-204 (367)
431 PF14761 HPS3_N: Hermansky-Pud 60.8 43 0.00093 27.8 6.8 51 223-274 29-81 (215)
432 KOG4659 Uncharacterized conser 60.8 2.4E+02 0.0052 30.3 13.7 23 127-149 660-682 (1899)
433 COG3204 Uncharacterized protei 60.4 1.2E+02 0.0026 26.6 19.2 122 36-158 82-210 (316)
434 PF10168 Nup88: Nuclear pore c 60.4 1.5E+02 0.0032 29.7 11.7 33 209-242 149-181 (717)
435 COG5167 VID27 Protein involved 59.8 29 0.00064 32.6 6.2 63 220-284 571-634 (776)
436 PF13570 PQQ_3: PQQ-like domai 59.6 18 0.0004 20.7 3.4 21 50-70 20-40 (40)
437 PHA02790 Kelch-like protein; P 59.6 1.6E+02 0.0034 27.8 16.2 58 221-283 407-471 (480)
438 PF01436 NHL: NHL repeat; Int 59.3 25 0.00054 18.5 3.8 24 43-66 5-28 (28)
439 COG3490 Uncharacterized protei 59.0 1.3E+02 0.0027 26.5 10.2 53 47-100 121-179 (366)
440 cd00216 PQQ_DH Dehydrogenases 57.9 1.7E+02 0.0037 27.6 22.9 30 221-250 405-434 (488)
441 KOG2247 WD40 repeat-containing 56.8 1.6 3.4E-05 40.4 -2.3 114 40-159 35-148 (615)
442 PF01011 PQQ: PQQ enzyme repea 56.5 35 0.00076 19.3 4.6 25 53-77 2-26 (38)
443 PF15390 DUF4613: Domain of un 55.7 2E+02 0.0044 27.8 14.6 66 40-112 20-90 (671)
444 PF12768 Rax2: Cortical protei 55.7 1E+02 0.0022 26.8 8.7 53 59-112 14-72 (281)
445 PF14269 Arylsulfotran_2: Aryl 54.6 1.3E+02 0.0027 26.5 9.3 70 41-111 145-219 (299)
446 PF04053 Coatomer_WDAD: Coatom 53.7 1.9E+02 0.0042 27.0 16.5 109 37-158 30-173 (443)
447 PF05096 Glu_cyclase_2: Glutam 51.4 1.6E+02 0.0035 25.4 22.7 180 44-270 49-249 (264)
448 TIGR03074 PQQ_membr_DH membran 50.7 2.8E+02 0.0061 28.0 22.1 62 51-112 194-278 (764)
449 TIGR03606 non_repeat_PQQ dehyd 49.8 2.3E+02 0.0049 26.7 14.6 56 222-278 369-431 (454)
450 TIGR03118 PEPCTERM_chp_1 conse 47.4 1.5E+02 0.0033 26.2 8.3 69 214-282 26-118 (336)
451 PF15390 DUF4613: Domain of un 47.0 2.7E+02 0.0059 27.0 10.4 67 44-111 117-185 (671)
452 TIGR02604 Piru_Ver_Nterm putat 46.0 2.3E+02 0.0049 25.6 12.2 103 42-147 16-142 (367)
453 PF01731 Arylesterase: Arylest 45.0 53 0.0012 22.9 4.4 28 43-70 57-85 (86)
454 PF10647 Gmad1: Lipoprotein Lp 39.9 2.3E+02 0.0051 24.0 12.0 106 41-148 67-185 (253)
455 PF05694 SBP56: 56kDa selenium 39.6 3.2E+02 0.007 25.5 11.1 97 17-113 222-343 (461)
456 PHA03098 kelch-like protein; P 39.0 2.6E+02 0.0056 26.6 9.6 24 50-73 389-418 (534)
457 PF07250 Glyoxal_oxid_N: Glyox 38.1 2.5E+02 0.0055 23.8 11.5 86 63-149 48-138 (243)
458 PRK13684 Ycf48-like protein; P 37.8 2.9E+02 0.0064 24.5 13.6 112 37-153 170-283 (334)
459 COG4590 ABC-type uncharacteriz 37.8 1.5E+02 0.0033 27.7 7.1 118 37-156 218-344 (733)
460 COG3823 Glutamine cyclotransfe 36.2 2.6E+02 0.0056 23.4 15.2 49 222-270 186-247 (262)
461 PF14779 BBS1: Ciliary BBSome 36.0 2.2E+02 0.0048 24.4 7.5 55 223-278 196-254 (257)
462 PF14779 BBS1: Ciliary BBSome 35.9 2.2E+02 0.0047 24.4 7.5 56 53-108 197-254 (257)
463 PRK13684 Ycf48-like protein; P 35.5 3.2E+02 0.0069 24.3 12.0 112 39-156 214-329 (334)
464 PF14269 Arylsulfotran_2: Aryl 32.7 1.7E+02 0.0037 25.6 6.7 63 220-282 153-220 (299)
465 PF14870 PSII_BNR: Photosynthe 32.3 3.5E+02 0.0076 23.8 19.2 105 44-156 108-213 (302)
466 PHA02790 Kelch-like protein; P 31.8 4.4E+02 0.0095 24.8 9.7 97 50-157 362-469 (480)
467 cd01268 Numb Numb Phosphotyros 30.9 2.5E+02 0.0053 21.6 6.9 53 52-107 51-103 (138)
468 KOG3616 Selective LIM binding 30.3 1.2E+02 0.0025 30.4 5.4 31 42-72 17-47 (1636)
469 PF01731 Arylesterase: Arylest 30.2 1.9E+02 0.0041 20.1 6.7 48 232-282 36-84 (86)
470 PLN00033 photosystem II stabil 30.1 4.4E+02 0.0096 24.2 14.6 129 20-155 260-396 (398)
471 COG4590 ABC-type uncharacteriz 30.0 4.8E+02 0.01 24.6 9.7 105 49-160 278-388 (733)
472 PF12657 TFIIIC_delta: Transcr 28.5 1.2E+02 0.0025 24.0 4.6 30 254-283 87-122 (173)
473 TIGR03118 PEPCTERM_chp_1 conse 28.5 4.2E+02 0.0092 23.5 22.3 219 42-284 25-281 (336)
474 PF12768 Rax2: Cortical protei 28.1 4E+02 0.0087 23.2 9.6 75 36-111 33-122 (281)
475 TIGR03606 non_repeat_PQQ dehyd 26.6 3.1E+02 0.0068 25.7 7.5 52 42-93 32-90 (454)
476 PF10584 Proteasome_A_N: Prote 26.4 18 0.00039 18.4 -0.3 8 259-266 7-14 (23)
477 PF14781 BBS2_N: Ciliary BBSom 25.5 3.1E+02 0.0067 21.0 11.3 105 46-157 5-124 (136)
478 KOG3616 Selective LIM binding 25.3 1.3E+02 0.0027 30.2 4.7 59 219-282 23-83 (1636)
479 KOG1897 Damage-specific DNA bi 25.2 8E+02 0.017 25.6 21.0 110 36-155 445-563 (1096)
480 COG5308 NUP170 Nuclear pore co 24.9 2.5E+02 0.0055 28.7 6.7 28 129-158 182-209 (1263)
481 KOG1900 Nuclear pore complex, 24.9 1.8E+02 0.0039 30.8 6.0 70 40-113 179-273 (1311)
482 PF08801 Nucleoporin_N: Nup133 24.4 5.5E+02 0.012 23.5 14.6 30 254-283 191-220 (422)
483 PF06739 SBBP: Beta-propeller 24.2 1.5E+02 0.0032 16.9 3.3 22 253-274 13-34 (38)
484 KOG4460 Nuclear pore complex, 23.9 3.1E+02 0.0068 26.3 6.8 65 219-284 112-200 (741)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.1 2.7E+02 0.0058 26.7 6.6 54 221-274 471-526 (527)
486 KOG3356 Predicted membrane pro 22.8 1.1E+02 0.0024 22.4 3.0 32 31-62 60-91 (147)
487 COG3204 Uncharacterized protei 22.7 5.3E+02 0.012 22.7 14.8 74 77-159 81-159 (316)
488 PF12341 DUF3639: Protein of u 22.3 1.4E+02 0.003 15.8 3.7 23 42-66 4-26 (27)
489 TIGR03054 photo_alph_chp1 puta 22.0 3.7E+02 0.0079 20.6 6.5 61 224-284 43-115 (135)
490 PF10214 Rrn6: RNA polymerase 21.4 8.6E+02 0.019 24.6 15.9 122 37-160 77-234 (765)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 21.3 3.8E+02 0.0081 27.6 7.2 54 230-284 327-387 (912)
492 PF13418 Kelch_4: Galactose ox 21.3 1.3E+02 0.0029 17.6 2.9 23 221-243 12-40 (49)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-36 Score=253.97 Aligned_cols=256 Identities=21% Similarity=0.364 Sum_probs=186.4
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEecccCCeEEEEEccC--
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGDE-- 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~-- 92 (303)
|....+|+.-+-... -.--||...|.|++|+|||+.||+|+.||+|++||.++|+.. ..+.+|...|++++|.|-
T Consensus 136 D~TvR~WD~~TeTp~--~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPL--FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred CceEEeeccCCCCcc--eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 445566665222211 133699999999999999999999999999999999998765 457899999999999642
Q ss_pred --CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc-cC
Q 022074 93 --SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN-LG 169 (303)
Q Consensus 93 --~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~ 169 (303)
...+|+++++||+|+|||+. .+.....+.||..+|+|+.+..+| +|++|+.|++|++|+........... +.
T Consensus 214 ~p~~r~las~skDg~vrIWd~~----~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHa 288 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTK----LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHA 288 (480)
T ss_pred CCCccceecccCCCCEEEEEcc----CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccc
Confidence 24589999999999999975 334566788999999999998766 89999999999999865421110000 00
Q ss_pred c------cceeeeceeeeCCCCCc-------------------------cccCCCC-------------CcceEEecccc
Q 022074 170 F------RSYEWDYRWMDYPPQAR-------------------------DLKHPCD-------------QSVATYKGHSV 205 (303)
Q Consensus 170 ~------~~~~~~~~~~~~~~~~~-------------------------~~~~~~~-------------~~~~~~~~~~~ 205 (303)
. .+.++..+.-.|.+... .+...++ +++..+.||+.
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~ 368 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA 368 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence 0 00011111111111111 1111111 11222333332
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+. ....||||++++|+|+-|+.|++||-++|+.+..|.+|-++|..++||.|.++|+|+|.|.+|++|++...
T Consensus 369 lV------n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 369 LV------NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred he------eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 21 23458999999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=259.64 Aligned_cols=229 Identities=25% Similarity=0.382 Sum_probs=196.2
Q ss_pred eEEEEE----ccCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q 022074 4 IVHIVD----VGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 78 (303)
Q Consensus 4 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~ 78 (303)
..||++ +-+++-|.++-+|.. .+.. -++..||...|..++|+|+|++|+++|.|.+-||||+.++.+.....
T Consensus 224 ~fhP~~~~~~lat~s~Dgtvklw~~---~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 224 VFHPVDSDLNLATASADGTVKLWKL---SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred EEccCCCccceeeeccCCceeeecc---CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc
Confidence 357774 667888888888876 3322 34558999999999999999999999999999999999999888888
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
+|..+|.+++|++ ++.+++||+.|..-|+||+| +++.+-.+.||...|..++|+|+|-.++|||.|++++|||+|
T Consensus 301 GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 301 GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred ccccccceeEecC-CCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9999999999965 68999999999999999998 455667789999999999999999999999999999999999
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVY 237 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iw 237 (303)
...+ +.++.+|..+..-++ |+| .|.+|+|++.|++++||
T Consensus 376 ~r~~----------------------------------ly~ipAH~nlVS~Vk------~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 376 MRSE----------------------------------LYTIPAHSNLVSQVK------YSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred cccc----------------------------------ceecccccchhhheE------ecccCCeEEEEcccCcceeee
Confidence 6432 223333433322222 444 68999999999999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 238 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 238 d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
..++.++++.+.+|++.|.+++.+||+.+++|++.|+++++|.
T Consensus 416 s~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999996
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.6e-36 Score=273.38 Aligned_cols=206 Identities=25% Similarity=0.425 Sum_probs=185.4
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+.||+.||+.++|+|+.++|+++|.|++||||.+.+........+|..+|..+.|+ +.+.+|+|||.|++.++|...
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d-- 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTD-- 523 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec-CCceEEEecCCCceeeeeecc--
Confidence 46999999999999999999999999999999999998887888999999999997 569999999999999999865
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
...|.+.+.||...|.|+.|+|+.+|++|||.|++||+||....
T Consensus 524 --~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------------------------------- 567 (707)
T KOG0263|consen 524 --HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------------------------------- 567 (707)
T ss_pred --cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC----------------------------------
Confidence 35678899999999999999999999999999999999998642
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+..+.||...... ..|||+|++|++|++||.|.+||+.+++.+..+.+|++.|.++.||.+|..||++|.|+
T Consensus 568 ~~VRiF~GH~~~V~a------l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTA------LAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred cEEEEecCCCCceEE------EEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 235566777644433 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCCC
Q 022074 275 DVVRWEFPGNG 285 (303)
Q Consensus 275 ~i~~Wd~~~~~ 285 (303)
++++||+....
T Consensus 642 sV~lWD~~~~~ 652 (707)
T KOG0263|consen 642 SVRLWDLTKVI 652 (707)
T ss_pred eEEEEEchhhc
Confidence 99999986543
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-34 Score=231.83 Aligned_cols=264 Identities=22% Similarity=0.347 Sum_probs=196.6
Q ss_pred ceEEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecc
Q 022074 3 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAH 80 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h 80 (303)
|-.++|+.-+|+.|+.|..|+.++|.=.-++- =-+.-|..+...|+++.|+++++-. |||||+.++. ....+.+|
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEecc
Confidence 55689999999999999999999998221111 1123499999999999999998775 9999998875 45678899
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
+..|..+.|. .+++.+.||++||++|+||+|... ......|..+|+.+..+|+...|++|..+|.|++||++..
T Consensus 83 ~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 83 TKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS-----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc-----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 9999999995 568999999999999999998422 2234468899999999999999999999999999999853
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCC------------------CcceEEecccceeeeEEEeeeeeeeCCC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD------------------QSVATYKGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
... +.+ .+...-.++.+...+++..+..... .++..++.|. ..+.+|. +|||+
T Consensus 157 ~c~--~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C~----lSPd~ 227 (311)
T KOG0315|consen 157 SCT--HEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN--GHILRCL----LSPDV 227 (311)
T ss_pred ccc--ccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc--ceEEEEE----ECCCC
Confidence 211 111 0011111222223333332221111 0111122222 1233443 67899
Q ss_pred eEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 223 KYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++||++|.|.+++||+.++. +....+++|+.++++++||.|++||+||+.|+..++|+++..
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 99999999999999999987 556678999999999999999999999999999999998754
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=249.24 Aligned_cols=204 Identities=25% Similarity=0.367 Sum_probs=179.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
|=+.||..+.|++|++.|+|||++|.++||+.++.....++.+|+..|.++.|+|. ++..++||+.||+|++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~--- 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS--- 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC---
Confidence 56678999999999999999999999999999999888999999999999999987 47789999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...++..+.||...|..++|+|+|++|+|++.|.+-|+||++.......
T Consensus 250 -~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------ 298 (459)
T KOG0272|consen 250 -QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------ 298 (459)
T ss_pred -CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence 3367888999999999999999999999999999999999975332111
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..||. +..++.+|.+||.+++|||.|..-+|||+++|.++..+.+|..+|.+|+|||+|-.|||||.|++
T Consensus 299 ----QEGHs------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 299 ----QEGHS------KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ----hcccc------cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 11222 11234457789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
+++||+..-
T Consensus 369 ~kVWDLR~r 377 (459)
T KOG0272|consen 369 CKVWDLRMR 377 (459)
T ss_pred EEEeeeccc
Confidence 999998743
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=235.37 Aligned_cols=228 Identities=26% Similarity=0.407 Sum_probs=190.4
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-----CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCe
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 84 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v 84 (303)
|-||+|+..|.+|+--+|.+. .--..||+-.|.+++|.| ..++++++|.||+|+|||+..++.+..+.+|+..|
T Consensus 172 iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhccccCCeEEEecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 679999999999998777655 445589999999999986 57789999999999999999999998999999999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccc-----------------------------cC-------------------
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCL-----------------------------NV------------------- 116 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~-----------------------------~~------------------- 116 (303)
+|++|.- ..++.|||.|++|++|+...+ ..
T Consensus 251 TCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 9999953 358999999999999974210 00
Q ss_pred ---------------------------CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 117 ---------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 117 ---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
..+++....||..-|+.+.|+||+.++++++.|++||+||.+..+
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-------- 400 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-------- 400 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc--------
Confidence 011333456899999999999999999999999999999987533
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.+.++.||-...+ ...++.|.++|++|+.|.++++||+++.++...+.
T Consensus 401 --------------------------~lasfRGHv~~VY------qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 401 --------------------------FLASFRGHVAAVY------QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred --------------------------hhhhhhhccceeE------EEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 2344444432221 22367789999999999999999999999888999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+|.+.|.+++|+|||..+++|+.|..+++|.
T Consensus 449 Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 449 GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=222.21 Aligned_cols=227 Identities=23% Similarity=0.348 Sum_probs=188.3
Q ss_pred cCchhhcccccc-ccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 11 GSGTMESLANVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
|+..+|+.-.+. +--+|...-.-...||+..+.|+.|.+| ..|+++|.|.+.-+||+++++....+.+|.+.|-++.+
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 666677665555 1112222223345899999999999985 56999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
.|.+++.|+||+-|++.+|||.|. +...+.|.||...|+++.|.|+|.-|+||+.|+++|+||+|...+...++.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~----~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~- 269 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRS----GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH- 269 (343)
T ss_pred CCCCCCeEEecccccceeeeeccC----cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc-
Confidence 776899999999999999999983 456778999999999999999999999999999999999997543322211
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.. ......+..||..|++|.+|..|.++.+||.-.++.+..+.
T Consensus 270 ---------------------------------~~----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 270 ---------------------------------DS----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ---------------------------------Cc----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 00 00111234578889999999999999999999999999999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+|+.+|.++..+|||..|+|||+|.++++|.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999994
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-31 Score=216.27 Aligned_cols=230 Identities=21% Similarity=0.293 Sum_probs=179.2
Q ss_pred EccCchhhccccccccccCcCcccc---cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 9 DVGSGTMESLANVTEIHDGLDFSAA---DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
++=+++||-.+=+|....-+..-+- -..||+.-|..+..++||++++++|+|+++|+||+.+++...++.+|...|.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL 109 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE
Confidence 4558899988877776443222111 1259999999999999999999999999999999999988889999999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCC
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
+++|+++ +.+++||+.|.++++|+.... ......-.+|.+-|.++.|+|+ ..+|+++|.|++||+||++..+..
T Consensus 110 sva~s~d-n~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 110 SVAFSTD-NRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred EEEecCC-CceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 9999764 678999999999999996421 1111111223667999999997 789999999999999999853321
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
..+-||...... ..+||||.+.++|+.||.+.+||+..++
T Consensus 186 ----------------------------------~~~~gh~~~v~t------~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 186 ----------------------------------TTFIGHSGYVNT------VTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred ----------------------------------hccccccccEEE------EEECCCCCEEecCCCCceEEEEEccCCc
Confidence 112223222211 2368999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++.+ .|..+|.+++|+|+..+|+.+- +..|++||..+.
T Consensus 226 ~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 226 NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccch
Confidence 88887 4888999999999988777665 556999998754
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.2e-31 Score=233.20 Aligned_cols=257 Identities=23% Similarity=0.377 Sum_probs=195.3
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
=|++||.++-||+.++-..- -.+..||+.+|.+++|+.+|..++++|.|+.+++||+++|+....+. -...+.|+.|+
T Consensus 231 LS~gmD~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~ 308 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH 308 (503)
T ss_pred EecCCCceEEEEEEecCcce-ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecC
Confidence 37899999999999873333 34668999999999999999999999999999999999998765443 33467899998
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
|++.+.|++|+.|+.|+.||+|. +..+..+..|..+|..+.|-+++.++++.+.|+++++|+.+........ .
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs----~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i---~ 381 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS----GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI---A 381 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc----hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh---c
Confidence 87778999999999999999984 3456667789999999999999999999999999999998753221100 0
Q ss_pred cceeeeceeeeCCCCCccccCC-CCCcceE--------------EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHP-CDQSVAT--------------YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
..-......+...|..+.+... .++.+.. +.||.. ..+.....|||||++|++|+.||.+.
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v----aGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV----AGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec----cCceeeEEEcCCCCeEEeecCCccEE
Confidence 0000011112222222222111 1222222 233321 22233456889999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEee
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 280 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd 280 (303)
+||.++-+++..+++|..++..+.|+|..+ .+||++.||.|++|+
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999875 799999999999996
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=7.6e-30 Score=209.70 Aligned_cols=222 Identities=23% Similarity=0.364 Sum_probs=187.8
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC------ceEEEEecccCCeE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSLRILAHTSDVN 85 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~------~~~~~~~~h~~~v~ 85 (303)
|+|-|.-.=||+-++.++.-++. -....|.+++|+|.|+.+|+|+-|+...||++.+. +...++.+|++-+.
T Consensus 72 SaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS 149 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS 149 (343)
T ss_pred eeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE
Confidence 67777777899999999765433 33678999999999999999999999999999865 23456889999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
|+.|.+ +..++|+|.|.++.+||++ .+.....|.||.+.|.+++++| +++.+++|+.|+..+|||+|...
T Consensus 150 cC~f~d--D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--- 220 (343)
T KOG0286|consen 150 CCRFLD--DNHILTGSGDMTCALWDIE----TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--- 220 (343)
T ss_pred EEEEcC--CCceEecCCCceEEEEEcc----cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---
Confidence 999954 4678899999999999986 5567788999999999999999 89999999999999999998532
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
.++++.||...+..+ .|.|+|.-+++|++|+++++||++..+.
T Consensus 221 -------------------------------c~qtF~ghesDINsv------~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 221 -------------------------------CVQTFEGHESDINSV------RFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred -------------------------------eeEeecccccccceE------EEccCCCeeeecCCCceeEEEeecCCcE
Confidence 345666665544333 3667899999999999999999999888
Q ss_pred EEEeecC--CCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 245 VAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 245 ~~~~~~h--~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+..++.. ..+|++++||..|++|.+|..|.++.+||.
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 8887632 368999999999999999999999999995
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.5e-30 Score=208.51 Aligned_cols=205 Identities=22% Similarity=0.368 Sum_probs=171.1
Q ss_pred cCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCC-----CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 34 DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
...||+..|.+++..+. -+.+++++.|.++.+|++.. |..+..+.+|...|+.+..++ ++++++|+++|+++|
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLR 88 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEE
Confidence 45799999999999986 55788899999999998865 445678899999999999864 588999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+||+. .+++.+.|.||...|.++++++|.++++||++|+++++|++-.. |
T Consensus 89 lWDl~----~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----c--------------------- 138 (315)
T KOG0279|consen 89 LWDLA----TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----C--------------------- 138 (315)
T ss_pred EEEec----CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----E---------------------
Confidence 99985 34567789999999999999999999999999999999997421 1
Q ss_pred cccCCCCCcceEEecc--cceeeeEEEeeeeeeeCC--CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 188 DLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
..+...+ .....++ . |+|+ ..+++++|.|+++++||+.+.+....+-+|+..++.|++|||
T Consensus 139 ---------k~t~~~~~~~~WVscv--r----fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 139 ---------KYTIHEDSHREWVSCV--R----FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred ---------EEEEecCCCcCcEEEE--E----EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence 1111111 1111222 2 4444 789999999999999999999988899999999999999999
Q ss_pred CCeEEEEeCCCCEEEeecCCC
Q 022074 264 QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|...++|+.||++.+||+...
T Consensus 204 GslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCCceEEEEEccCC
Confidence 999999999999999999755
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.5e-31 Score=224.49 Aligned_cols=220 Identities=22% Similarity=0.391 Sum_probs=180.3
Q ss_pred ccCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
|=||.-|..|.||+. +..+ --..+||++.|.|+.|.. +.+++||.|.+|++||.+++.....+..|.+.|-.+.
T Consensus 210 iVSGlrDnTikiWD~---n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDK---NSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred hhcccccCceEEecc---ccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 447888888888888 5443 344589999999999974 5899999999999999999999999999999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|+ ..+++|+|+|.++++||..... .......+.||..+|+.++|+ ++|+++++.|++|++|++....
T Consensus 285 f~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e------- 351 (499)
T KOG0281|consen 285 FS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE------- 351 (499)
T ss_pred Ee---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee-------
Confidence 95 3489999999999999986432 223345678999999999984 5699999999999999986421
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
.+.++.||..-+.++ . ..++++++|++|.+|++||+..|.++..+
T Consensus 352 ---------------------------fvRtl~gHkRGIACl------Q--Yr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 352 ---------------------------FVRTLNGHKRGIACL------Q--YRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ---------------------------eehhhhcccccceeh------h--ccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 133344443222221 1 35799999999999999999999999999
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|+.-|.++.| |.+.++||+.||+|++||+...
T Consensus 397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999 5678999999999999998754
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2.7e-30 Score=236.34 Aligned_cols=200 Identities=24% Similarity=0.425 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-------------------------------eEEEEecccCCeEEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------------------------------LSLRILAHTSDVNTVC 88 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-------------------------------~~~~~~~h~~~v~~l~ 88 (303)
.++.|..|++|++.+|.|-.|..|++|.+...+ ...++.+|.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 369999999999999999999999999987421 2245789999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|+|+ .++|+++|+|++||+|.++. ......+.||..+|+.+.|+|.|-||||+|.|++.++|......
T Consensus 459 FsPd-~rfLlScSED~svRLWsl~t----~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------- 526 (707)
T KOG0263|consen 459 FSPD-RRFLLSCSEDSSVRLWSLDT----WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------- 526 (707)
T ss_pred eccc-ccceeeccCCcceeeeeccc----ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-------
Confidence 9864 78999999999999999863 34455688999999999999999999999999999999865311
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+...+.||-....+. .|+|+..|++|||.|.++|+||+.+|..+..|
T Consensus 527 ---------------------------PlRifaghlsDV~cv------~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 527 ---------------------------PLRIFAGHLSDVDCV------SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred ---------------------------chhhhcccccccceE------EECCcccccccCCCCceEEEEEcCCCcEEEEe
Confidence 122333333222222 37788999999999999999999999999999
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.++|++++|||+|++||||++||.|++||++..
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999999999999999999999999999999864
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=233.47 Aligned_cols=261 Identities=33% Similarity=0.548 Sum_probs=202.5
Q ss_pred cCchhhccccccccccCcC-cccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceEEEEecccCCeEEEE
Q 022074 11 GSGTMESLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~~~~~~h~~~v~~l~ 88 (303)
.+++.+-++.+|..-++.. . .....||...|.+++|+|+|+++++++.|++++|||+ ..+.....+.+|...|++++
T Consensus 175 ~~~~~~~~i~~~~~~~~~~~~-~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~ 253 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKSNL-LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA 253 (456)
T ss_pred EEccCCCcEEEeecccccchh-hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence 3455666677777633331 2 2334899999999999999999999999999999999 44577788899999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC--ccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN--ASC 166 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~--~~~ 166 (303)
|+++ ++++++|+.|++|++||++. ++..+.+.+|.+.|++++|++++++|++++.|+.|++||+...... ...
T Consensus 254 f~p~-g~~i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 254 FSPD-GNLLVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred ecCC-CCEEEEecCCCcEEEEeccC----CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 9876 59999999999999999873 5677889999999999999999999999999999999999875511 111
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCC------------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCD------------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
.... ... ......+.++...+..... .....+.+|... ..|.+.+.++++++++++|+.|+.|
T Consensus 329 ~~~~-~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 329 SGAE-NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred cCCC-CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceE
Confidence 0000 000 1233344444444433222 223334444432 2566777778899999999999999
Q ss_pred EEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEe--CCCCEEEeecC
Q 022074 235 YVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 282 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s--~Dg~i~~Wd~~ 282 (303)
++||..++..+..+.+| ...+..++|+|..+++++++ .|+.+++|..+
T Consensus 404 ~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999989999999 89999999999999999999 78999999854
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-30 Score=217.06 Aligned_cols=249 Identities=23% Similarity=0.375 Sum_probs=197.7
Q ss_pred eEEEE--EccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEecc
Q 022074 4 IVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH 80 (303)
Q Consensus 4 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h 80 (303)
|.||. ++-++|-|+.|-||+.-+|.= .....||+.+|.+|+|+..|+++++++.|-.+++||..+. +....+.+|
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh 192 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGH 192 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCc
Confidence 44554 456777799999999866643 5577999999999999999999999999999999999773 334557789
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
+..|.+++|.|. ++.++|++.|.+|+.|+.. ++..+..+.+|.+-|..+....||..+++++.|.++++|-+...
T Consensus 193 ~h~vS~V~f~P~-gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 193 EHGVSSVFFLPL-GDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred ccceeeEEEEec-CCeeeecccccceeEEecc----cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 999999999765 7899999999999999975 45567789999999999999999999999999999999987543
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
. |...++..+..++...+.|....- .+....+. ...++++.+++.|++|++||+.
T Consensus 268 ~----~k~~lR~hEh~vEci~wap~~~~~------~i~~at~~---------------~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 268 Q----CKAELREHEHPVECIAWAPESSYP------SISEATGS---------------TNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred h----hhhhhhccccceEEEEecccccCc------chhhccCC---------------CCCccEEEeecccceEEEEecc
Confidence 2 223344444444433332221100 00000000 0136789999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++.++.++.+|..+|.+++|||.|+||+|+.+|+++++||++..
T Consensus 323 tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 323 TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999998643
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.9e-30 Score=214.10 Aligned_cols=203 Identities=29% Similarity=0.505 Sum_probs=176.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||...|.|+++.|-.+++++|+.|+++.|||+.+|++...+.+|-.-|..+++++- -.++++++.|++|+-||+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe--- 223 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLE--- 223 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEech---
Confidence 699999999999999999999999999999999999999999999999999999754 4588999999999999986
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
..+.++.+.||..+|.+++..|.-..|+|||+|.++|+||+|...
T Consensus 224 -~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---------------------------------- 268 (460)
T KOG0285|consen 224 -YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---------------------------------- 268 (460)
T ss_pred -hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----------------------------------
Confidence 346788899999999999999988899999999999999998522
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
.+..+.||......+.| . +-...+++|+.|++|++||+..|+.+.++..|...|.+++.+|....+||+|.| +
T Consensus 269 ~V~~l~GH~~~V~~V~~--~----~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 269 SVHVLSGHTNPVASVMC--Q----PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred eEEEecCCCCcceeEEe--e----cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence 24456666654433322 1 223458999999999999999999999999999999999999999999999987 7
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
|+-|+++..
T Consensus 342 ik~w~~p~g 350 (460)
T KOG0285|consen 342 IKQWKLPEG 350 (460)
T ss_pred ceeccCCcc
Confidence 899998743
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=221.21 Aligned_cols=224 Identities=26% Similarity=0.425 Sum_probs=180.7
Q ss_pred EEccCchhh-ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeE
Q 022074 8 VDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 85 (303)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~ 85 (303)
|.+|+.|=+ .||+- +.-+|++ ..++|+.+|.++.|+++|.++++|+.+|.|+.|+....... .+.+ |...|.
T Consensus 111 Lltgs~SGEFtLWNg----~~fnFEt-ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIR 184 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNG----TSFNFET-ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIR 184 (464)
T ss_pred eEeecccccEEEecC----ceeeHHH-HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhh
Confidence 456665555 34433 2224433 34899999999999999999999999999999988766543 3444 448999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+++|+| ++..|+|+|.||+|+|||.... +....+.||.-.|.+++|+|.-.+++++|.|..|++||.|...
T Consensus 185 dlafSp-nDskF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~---- 255 (464)
T KOG0284|consen 185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---- 255 (464)
T ss_pred eeccCC-CCceeEEecCCCeEEEEeccCC----chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc----
Confidence 999987 5778999999999999997632 3455678999999999999999999999999999999988543
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~ 245 (303)
+++++.+|.... + ...|++++.+|+|+|.|..++++|+++.+.+
T Consensus 256 ------------------------------cl~tlh~HKntV--l----~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 256 ------------------------------CLATLHGHKNTV--L----AVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred ------------------------------hhhhhhhccceE--E----EEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 334444444322 2 2336678899999999999999999998999
Q ss_pred EEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeecC
Q 022074 246 AALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 246 ~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~~ 282 (303)
.++.+|+..+++++|+|-. .+|.+|+.||.+..|.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9999999999999999965 589999999999999987
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.6e-28 Score=213.11 Aligned_cols=221 Identities=22% Similarity=0.336 Sum_probs=176.8
Q ss_pred cccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 22 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
.+||+=.-......+-|+.||+++.|+.+|.+|++++.|+++.|||..++.....+.-|..+--.+.|.. .+-|++++
T Consensus 259 ~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~ 336 (524)
T KOG0273|consen 259 ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSS 336 (524)
T ss_pred EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecC
Confidence 3444333333456789999999999999999999999999999999999987777777877767788953 45799999
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
.|+.++++.+. ..+|...+.||...|.++.|.|.+.+|+|++.|++++||.+......
T Consensus 337 td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------------------ 394 (524)
T KOG0273|consen 337 TDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------------------ 394 (524)
T ss_pred CCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------------------
Confidence 99999999875 45688899999999999999999999999999999999986532211
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeee-----eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~ 256 (303)
..+.+|.. .+....++|. .+..+..+++++.|+++++||+..+.++..|..|+.||.
T Consensus 395 ----------------~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 395 ----------------HDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ----------------hhhhhhcc--ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 11111111 1111122221 123467799999999999999999999999999999999
Q ss_pred EEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 257 DCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 257 ~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|||+++++|+|+.||.+.+|+.+..
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccch
Confidence 9999999999999999999999997643
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=203.11 Aligned_cols=233 Identities=28% Similarity=0.414 Sum_probs=177.0
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
-+|.||+.|-.|.. .|...-+-...||+.+|..+.|.+|++.++++|.|.+|+.||+++|+...++..|...|+.+...
T Consensus 63 aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~ 141 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS 141 (338)
T ss_pred eecCCcceEEEEec-cccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCcc
Confidence 46788887777765 23322244557999999999999999999999999999999999999999999999999999865
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCC-------------------------------------ccceeecccccCeEE
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKG-------------------------------------KPAGVLMGHLEGITF 133 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~ 133 (303)
.-...++.|++.|++++|||.|...... ...-.+.||.+.|+.
T Consensus 142 rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ 221 (338)
T KOG0265|consen 142 RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITG 221 (338)
T ss_pred ccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceee
Confidence 4456678899999999999987211000 011123456666666
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecc--cceeeeEE
Q 022074 134 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIR 211 (303)
Q Consensus 134 ~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 211 (303)
++.+++|.++++.+-|.++++||+|.. ++..+++..+.|+ .+...+++
T Consensus 222 lsls~~gs~llsnsMd~tvrvwd~rp~------------------------------~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTVRVWDVRPF------------------------------APSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred EEeccCCCccccccccceEEEEEeccc------------------------------CCCCceEEEeecchhhhhhhcce
Confidence 666666666666666666666665531 1223345555554 33345566
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
|.+ +|+++.+..|+.|+.+++||...+..++.+.+|.+.|++++|+|..++|.+++.|.+|.+
T Consensus 272 csw----sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 272 CSW----SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eec----cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 664 457888999999999999999999999999999999999999999999999999999986
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=216.77 Aligned_cols=201 Identities=21% Similarity=0.353 Sum_probs=167.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
--+.+|..+.|.|+|+.|++|+..|-+.||+..+-.....+..|+..|.++.|++ ++.+++||+.+|.|++|+..
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpn---- 168 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPN---- 168 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccc----
Confidence 3457899999999999999999999999998855544445678999999999975 58899999999999999853
Q ss_pred CCccceeecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 117 KGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 117 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...+..++.|. ++|++++|+|.+..|+|++.|++|+|||.+..++..
T Consensus 169 -mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~------------------------------- 216 (464)
T KOG0284|consen 169 -MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER------------------------------- 216 (464)
T ss_pred -hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-------------------------------
Confidence 12244455555 899999999999999999999999999987543211
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
.+.||.-..+.+ +++|...++|+||.|..|++||.++++++.++-+|+..|..+.|+|++++|+|+|.|..
T Consensus 217 ---vL~GHgwdVksv------dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 217 ---VLRGHGWDVKSV------DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred ---eeccCCCCccee------ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 123333222222 35567789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 022074 276 VVRWEFPG 283 (303)
Q Consensus 276 i~~Wd~~~ 283 (303)
++++|+..
T Consensus 288 ~kv~DiR~ 295 (464)
T KOG0284|consen 288 CKVFDIRT 295 (464)
T ss_pred EEEEehhH
Confidence 99999873
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-29 Score=228.77 Aligned_cols=230 Identities=23% Similarity=0.378 Sum_probs=187.6
Q ss_pred CchhhccccccccccCcCc---ccccCCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCce-----E----EEEe
Q 022074 12 SGTMESLANVTEIHDGLDF---SAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----S----LRIL 78 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~-----~----~~~~ 78 (303)
+++-|-.+-+|+. .++.. .-.-.+||+..|.+++++..+ .+++++|.|.++++|++...+. . ....
T Consensus 382 t~sKD~svilWr~-~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 382 TGSKDKSVILWRL-NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EecCCceEEEEEe-cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 5677778888888 22211 122238999999999998654 4899999999999999977321 1 1235
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.|+..|++++++| ++++++|||.|+++++|++. ......++.||..+|+++.|++.++.++|+|.|++|+||.+.
T Consensus 461 aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 461 AHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred hhcccccceEecC-CCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 7999999999975 68899999999999999985 456788999999999999999999999999999999999986
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
... ++.++.||... +.++. |-.++++|++++.||.|++|+
T Consensus 536 ~fS----------------------------------ClkT~eGH~~a--Vlra~----F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 536 TFS----------------------------------CLKTFEGHTSA--VLRAS----FIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred cce----------------------------------eeeeecCccce--eEeee----eeeCCcEEEeccCCCcEEEEe
Confidence 421 35566777532 33333 445789999999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
+++.+++.++.+|++.||+++-+|...+++||+.||.|.+|.-.+..++
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHH
Confidence 9999999999999999999999999999999999999999985544333
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=209.36 Aligned_cols=264 Identities=23% Similarity=0.324 Sum_probs=193.6
Q ss_pred cCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEE
Q 022074 11 GSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC 88 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~ 88 (303)
.+||.|..+-+|++..-.++. --..-||..+|.-+.||||.+++++|+.|..+++||+.+|.....+. +|...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 578889999999997777643 22335999999999999999999999999999999999998654433 2346788999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
|.| ++..+++|+.|+++..||+.. .......+-. -.|..++..+||+++++...|..+++++..........+
T Consensus 320 W~p-Dg~~~V~Gs~dr~i~~wdlDg-----n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis 393 (519)
T KOG0293|consen 320 WCP-DGFRFVTGSPDRTIIMWDLDG-----NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS 393 (519)
T ss_pred Ecc-CCceeEecCCCCcEEEecCCc-----chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence 976 588999999999999999752 2233333433 348899999999999999999999999875432211111
Q ss_pred cCccceeeec------eeeeCCCCCccccCCCC-CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 168 LGFRSYEWDY------RWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 168 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
.......+.+ ......++...+....+ ..+..+.||..-..+++.+|.- .+.+++++|++|+.|+||+-.
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg---~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG---GNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC---CCcceEEecCCCceEEEEEcc
Confidence 1000001110 01111122222221112 2345567777666677766543 355899999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
+|+++.++.+|...|++|+|+|..+ ++||||+||+|++|.+..
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999876 899999999999998753
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=7e-28 Score=198.79 Aligned_cols=237 Identities=23% Similarity=0.313 Sum_probs=182.2
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-EEEEecccCC
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 83 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~~h~~~ 83 (303)
|++.+-|-.+.-.++....+...++.--....||+..|+.+.|+|+|..+++|+.|..|.||++..... ...+.+|.+.
T Consensus 13 v~~a~~~~~q~s~~~~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA 92 (338)
T KOG0265|consen 13 VYPAKRGRSQISALALGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA 92 (338)
T ss_pred eEecccccccchhhhhcccccccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce
Confidence 445555544444555444444444332333479999999999999999999999999999999765432 3457799999
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~ 162 (303)
|..+.|+. +++.++|++.|.+|+.||.+ +++.+..+.+|..-|+++....-|.. +.|++.|+++|+||+|+...
T Consensus 93 VM~l~~~~-d~s~i~S~gtDk~v~~wD~~----tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 93 VMELHGMR-DGSHILSCGTDKTVRGWDAE----TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred eEeeeecc-CCCEEEEecCCceEEEEecc----cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence 99999975 57899999999999999976 56677788899999999886655655 56788999999999996432
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
...... . + .+. ...|..++..+.+|+-|+.|++||++..
T Consensus 168 ~~t~~~-------------------------k-----y-------qlt----Av~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 168 IKTFEN-------------------------K-----Y-------QLT----AVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred hhcccc-------------------------c-----e-------eEE----EEEecccccceeeccccCceeeeccccC
Confidence 211100 0 0 000 1113345677899999999999999999
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
+.+..+++|.++|+.+..||+|.++.|-++|+++++||++.-+.+
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 999999999999999999999999999999999999998754433
No 24
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.3e-29 Score=202.01 Aligned_cols=237 Identities=20% Similarity=0.324 Sum_probs=181.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||..+|++..++.+....++++.|-+.+|||.-+|.... ...|+.-|.+++|+ .+.+.|++|+.+.-+|+||+.
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-sf~hkhivk~~af~-~ds~~lltgg~ekllrvfdln--- 130 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-SFEHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLN--- 130 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-hhhhhheeeeEEec-ccchhhhccchHHHhhhhhcc---
Confidence 3999999999999999999999999999999999998765 34688899999996 567899999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
....+...+.+|..+|..+-|...++.|++++.|++||+||.|......+..+... +..+++.+++..+......
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEecCc
Confidence 23345567889999999999999999999999999999999998765544332211 1122333333333322222
Q ss_pred cceEEecccce-ee---eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEE
Q 022074 196 SVATYKGHSVL-RT---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 196 ~~~~~~~~~~~-~~---~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~ 270 (303)
.+.-++...+- .+ +..-..+...+|+...+++|++|..++.||..+++.+..+ ++|.+||.++.|||||...|+|
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 22222222110 00 0001112345677889999999999999999999998886 8999999999999999999999
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
|+||+|++|..-
T Consensus 286 SEDGTirlWQt~ 297 (334)
T KOG0278|consen 286 SEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEEEEec
Confidence 999999999864
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=217.74 Aligned_cols=203 Identities=31% Similarity=0.505 Sum_probs=170.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
|..+|.++.|+++|+.+++++.|+.+++|++.+.. +...+.+|...|+.++|++ +++++++++.|+++++||+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~--- 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK--- 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc---
Confidence 37899999999999999999999999999997776 5556678999999999975 57899999999999999973
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.......++.+|...|++++|+++++++++|+.|++||+||++...
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------------------------- 279 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------------------------- 279 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----------------------------------
Confidence 2345677889999999999999999999999999999999987522
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCC--CeEEEEECCCCCeEEEEe
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTS--PVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~--~I~~v~~sp~~~~las~s 271 (303)
.+..+.+|..... ...|++++.+|++++.|+.|++||+.+++ .+..+..+.. +++.+.|+|++.+++++.
T Consensus 280 ~~~~l~~hs~~is------~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 280 CVRKLKGHSDGIS------GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred EEEeeeccCCceE------EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 2233444442221 12477899999999999999999999998 4566766655 499999999999999999
Q ss_pred CCCCEEEeecCCC
Q 022074 272 WDGDVVRWEFPGN 284 (303)
Q Consensus 272 ~Dg~i~~Wd~~~~ 284 (303)
.|+.+++||+...
T Consensus 354 ~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 354 LDRTLKLWDLRSG 366 (456)
T ss_pred CCCeEEEEEccCC
Confidence 9999999998743
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=188.73 Aligned_cols=207 Identities=20% Similarity=0.343 Sum_probs=168.9
Q ss_pred CCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCc-eEEE--E-ecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 35 DGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-LSLR--I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~-~~~~--~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
..||..++..++|+|- |..|++||.|..||+|++..+. ...+ + .+|+..|..++|+| .+++|++||.|.++.||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIW 88 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEEe
Confidence 3799999999999998 8899999999999999998432 2222 1 26899999999964 68999999999999999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.....+ -+....+.||...|.+++|+++|++|||+++|++|=+|....... +
T Consensus 89 ~k~~~e--fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE------------f-------------- 140 (312)
T KOG0645|consen 89 KKEDGE--FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE------------F-------------- 140 (312)
T ss_pred ecCCCc--eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc------------E--------------
Confidence 754222 234667889999999999999999999999999999998763221 1
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC---CeEEEEeecCCCCeEEEEECCCCCe
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---GEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~---~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
.++..+++|....+... ++|...+|++++.|.+|++|+-.. -+++.++.+|+..|++++|+|.|..
T Consensus 141 -----ec~aVL~~HtqDVK~V~------WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 141 -----ECIAVLQEHTQDVKHVI------WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR 209 (312)
T ss_pred -----EEEeeeccccccccEEE------EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence 13455666665444433 456678999999999999998762 2578899999999999999999999
Q ss_pred EEEEeCCCCEEEeec
Q 022074 267 LVSSSWDGDVVRWEF 281 (303)
Q Consensus 267 las~s~Dg~i~~Wd~ 281 (303)
|++++.|+++++|..
T Consensus 210 l~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRL 224 (312)
T ss_pred EEEecCCcceEeeee
Confidence 999999999999983
No 27
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.7e-26 Score=213.48 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=157.6
Q ss_pred CCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCc-------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 35 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
..||+.+|.+++|+| +++.|++|+.|++|+|||+.++. ....+.+|...|.+++|+|..+++|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 469999999999999 88999999999999999997653 3456788999999999987656799999999999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
++||++ .+.....+.+|.+.|.+++|++++.+|++++.|++|++||++....
T Consensus 151 rIWDl~----tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~------------------------ 202 (493)
T PTZ00421 151 NVWDVE----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI------------------------ 202 (493)
T ss_pred EEEECC----CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE------------------------
Confidence 999986 3345566788999999999999999999999999999999985321
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe----CCCeEEEEECCCCeE-EEEeecC-CCCeEEEEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS----HDSCVYVYDLVSGEQ-VAALKYH-TSPVRDCSW 260 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~----~dg~i~iwd~~~~~~-~~~~~~h-~~~I~~v~~ 260 (303)
+..+.+|.... ..++. +.+++..+++++ .|+.|++||+++.+. +.....+ ...+....|
T Consensus 203 ----------v~tl~~H~~~~-~~~~~----w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~ 267 (493)
T PTZ00421 203 ----------VSSVEAHASAK-SQRCL----WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF 267 (493)
T ss_pred ----------EEEEecCCCCc-ceEEE----EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE
Confidence 11122221100 01122 334444555543 589999999987653 4433333 345667789
Q ss_pred CCCCCeEEEEe-CCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s-~Dg~i~~Wd~~~~ 284 (303)
++++++|++++ .|++|++||+...
T Consensus 268 d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 268 DEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 99999988887 5999999998743
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4e-27 Score=214.44 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=168.3
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++||-..+.+++++|||+.+++|+.||.|+|||...+-...++..|+..|+.+.|+ ..++.++|++.||+||.||+.-.
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeeccc
Confidence 47999999999999999999999999999999999998888999999999999996 56889999999999999996310
Q ss_pred ----------------------------------------cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 115 ----------------------------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 115 ----------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
-++++....+.||.++|.+++|++++..|++++.|++||+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 0123344567899999999999999999999999999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
||+-.... .+.++.- ..-.....|+|+|+.+|++..||.|
T Consensus 505 W~if~s~~---------------------------------~vEtl~i-------~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 505 WDIFSSSG---------------------------------TVETLEI-------RSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred EEeeccCc---------------------------------eeeeEee-------ccceeEEEEcCCCCeEEEEEecceE
Confidence 99732110 0011100 0001123478899999999999999
Q ss_pred EEEECCCCeEEEEeec--------------------CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 235 YVYDLVSGEQVAALKY--------------------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~--------------------h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+||.+.+..+..+++ ...+.+.+++|+||..+++||+...|.+++++.
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 9999987765544432 235799999999999999999999999999863
No 29
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.7e-26 Score=211.85 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=167.6
Q ss_pred EEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCc--------eEEE
Q 022074 6 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK--------LSLR 76 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~--------~~~~ 76 (303)
.+.+++.|.+...+.+|..-+. .......||..+|.+++|+|+ ++.|++|+.|++|+|||+.++. ....
T Consensus 43 ~~w~~~gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 43 VPWEVEGGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred EEEEcCCCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 3555666666666666654322 212334799999999999996 7899999999999999998642 1234
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
+.+|...|.+++|+|....+|++++.|++|++||++.. .....+ .|...|.+++|+++|.+|++++.|+.|++||
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 67899999999998765556789999999999998632 222233 2567899999999999999999999999999
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC----
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---- 232 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---- 232 (303)
+|.... +..+.+|..... .++.+...|++++.+++++|.|+
T Consensus 196 ~Rsg~~----------------------------------i~tl~gH~g~~~-s~~v~~~~fs~d~~~IlTtG~d~~~~R 240 (568)
T PTZ00420 196 PRKQEI----------------------------------ASSFHIHDGGKN-TKNIWIDGLGGDDNYILSTGFSKNNMR 240 (568)
T ss_pred CCCCcE----------------------------------EEEEecccCCce-eEEEEeeeEcCCCCEEEEEEcCCCCcc
Confidence 985321 112223321111 11112223567788889887764
Q ss_pred eEEEEECCC-CeEEEEeec--CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 233 CVYVYDLVS-GEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 233 ~i~iwd~~~-~~~~~~~~~--h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|+|||+++ .+.+..+.. +.+.+.-...++++.++++|+.|++|++|++..
T Consensus 241 ~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 241 EMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 799999985 455555433 334444555566789999999999999999854
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=215.74 Aligned_cols=223 Identities=22% Similarity=0.316 Sum_probs=182.9
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.+...||+-.|.+++-..+|..|++||.|.++++|.++.+.. .....+|+..|.+++.+......|+++|.|++++
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 335689999999999667889999999999999999855542 2345689999999999776788999999999999
Q ss_pred EEcCccccCCCccce-----eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 108 VWDRRCLNVKGKPAG-----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 108 lWd~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
+|++..-..+..+.. ....|...|++++++|++.+++|||.|++.+||++...
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---------------------- 495 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---------------------- 495 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------------------
Confidence 999863111111111 12358888999999999999999999999999998521
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+...++.||. +..|+..|++..+.++|+|.|++|+||.+.++.++++|++|+..|..+.|-.
T Consensus 496 ------------~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 496 ------------RLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ------------eEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 1244666765 3445667888899999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCEEEeecCCCCccCCCCcccc
Q 022074 263 SQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR 295 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~~ 295 (303)
++.+|+|++.||.+++|+++.+ ++...++.++
T Consensus 558 ~~~qliS~~adGliKlWnikt~-eC~~tlD~H~ 589 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTN-ECEMTLDAHN 589 (775)
T ss_pred CCcEEEeccCCCcEEEEeccch-hhhhhhhhcc
Confidence 9999999999999999999765 6666666553
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.3e-26 Score=225.40 Aligned_cols=231 Identities=22% Similarity=0.362 Sum_probs=178.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
+.++++|..+.||++-+|... ....+|+.+|.+++|+| ++..|++|+.|++|++||+.++.....+..+ ..+.++.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQ 624 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEE
Confidence 446778888999988655432 23478999999999996 7899999999999999999988776666544 6789999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|.+++++.|++|+.|++|++||++.. ..+...+.+|...|.++.|. ++.+|++++.|++|++||++......
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~---~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~---- 696 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNP---KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI---- 696 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCC---CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc----
Confidence 97777899999999999999998632 22455677899999999996 67899999999999999986421000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
....+..+.+|...... ..+++++.+|++|+.|+.|++|+......+..+
T Consensus 697 ------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 697 ------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred ------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 01123344555432221 236678899999999999999998765433221
Q ss_pred -------------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 249 -------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 249 -------------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
..|...|.+++|+|++++|++|+.||+|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999985
No 32
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=191.90 Aligned_cols=237 Identities=22% Similarity=0.323 Sum_probs=178.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC-CcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.+|..+|.+++.+ |.++++||.|.+|+|||++.......+..|.+.++++.|.++. .+.|++|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~- 116 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS- 116 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-
Confidence 6899999999987 7899999999999999999988888888999999999996653 34788999999999999763
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+.+|...|+.++++|.+.+.++.|.|+.+|+|||-..+..+.+++..... .+.+.+.+..+.....
T Consensus 117 ---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-----~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 117 ---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-----LVSWSPQGDHFVVSGR 188 (362)
T ss_pred ---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-----eeEEcCCCCEEEEEec
Confidence 34567788999999999999999999999999999999998765544443321110 1223333332222222
Q ss_pred CcceEEeccc--cee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE--CCCCCeE
Q 022074 195 QSVATYKGHS--VLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW--HPSQPML 267 (303)
Q Consensus 195 ~~~~~~~~~~--~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~--sp~~~~l 267 (303)
+.+..++-.. ... .-.+.+.. .| -++.+|++|+.|+.|++||......+..+.+|+.+|.++.+ .|.+.+|
T Consensus 189 ~~i~i~q~d~A~v~~~i~~~~r~l~~-~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIENPKRILCA-TF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred cEEEEEecccHhHhhhhhccccceee-ee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 2222222111 000 00011111 11 25678999999999999999998899999999999999995 5678899
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
+|+|.||.|++||+....
T Consensus 267 vTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEeccCceEEEEEccccc
Confidence 999999999999998663
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=185.58 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=162.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCe
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 131 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v 131 (303)
-+|+++|.|-+||+|.+.+|....++...+..|+.+...|+ .+.|++++ ...||+||+++.++ .|+..+.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~-~qhvRlyD~~S~np--~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAG-NQHVRLYDLNSNNP--NPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhhcc-CCeeEEEEccCCCC--CceeEEeccCCce
Confidence 47999999999999999999988777777789999999764 55666555 56899999986543 4788999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee-eCCCCCccccCCCCCcceEEecccc--eee
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM-DYPPQARDLKHPCDQSVATYKGHSV--LRT 208 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 208 (303)
+++.|..+|+.++|||.||++||||+|.+...-.+... ..+..+ ..|.++..+......-+..++-... ...
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-----spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-----SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-----CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 99999999999999999999999999974332211111 011111 1122222222222222333321110 000
Q ss_pred e----EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe------EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 209 L----IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 209 ~----~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~------~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
. .....+....+||++++.+...|.+++|++-+.+ ++..+++|++-|..+-+|||+++||++|.|.++++
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 0 0111223356899999999999999999987653 45567899999999999999999999999999999
Q ss_pred eecCCC
Q 022074 279 WEFPGN 284 (303)
Q Consensus 279 Wd~~~~ 284 (303)
|+....
T Consensus 242 wn~~~~ 247 (311)
T KOG0315|consen 242 WNTDDF 247 (311)
T ss_pred EecCCc
Confidence 998765
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=194.40 Aligned_cols=200 Identities=26% Similarity=0.375 Sum_probs=173.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||+..|.++.|-|.|.++++++.|.+|+.||..++-...++.+|..-|..+..+ .++.++++++.|.+|++|-..
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~--- 265 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVA--- 265 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec-CCeeEEEecCCCceEEEEEec---
Confidence 5999999999999999999999999999999999999999999999999999986 568999999999999999864
Q ss_pred CCCccceeecccccCeEEEEeCCC---------------CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~---------------~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+......+.+|...|.+++|.|. +.++.+++.|++||+||+...
T Consensus 266 -t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-------------------- 324 (406)
T KOG0295|consen 266 -TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-------------------- 324 (406)
T ss_pred -cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--------------------
Confidence 22234456778888888877432 358999999999999998532
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
.++.++.||.... ....|+|.|+||+++.+|+++++||++++++++.++.|+.-+++++|
T Consensus 325 --------------~cL~tL~ghdnwV------r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 325 --------------MCLFTLVGHDNWV------RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred --------------eEEEEEeccccee------eeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 2455666665432 23458899999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCCEEEee
Q 022074 261 HPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd 280 (303)
+.+.++++||+-|.++++|.
T Consensus 385 h~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCCceEEeccccceeeeee
Confidence 99999999999999999997
No 35
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=199.06 Aligned_cols=262 Identities=23% Similarity=0.328 Sum_probs=196.9
Q ss_pred CchhhccccccccccCc-----CcccccC-CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCe
Q 022074 12 SGTMESLANVTEIHDGL-----DFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDV 84 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v 84 (303)
+||-|..|.||.-.+|+ +.+++|. -=|+.+|.|++||.|.+.+++|+.||.|++|.+.+|+...++. +|+.+|
T Consensus 230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV 309 (508)
T ss_pred eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence 67889999999999997 4445453 3678899999999999999999999999999999998777766 799999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+|+.|+. ++..+++++.|.++|+--++ .++....+.||+.-|+-..|.++|+.+++++.|++|++|+.....+..
T Consensus 310 t~l~FSr-D~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 310 TCLSFSR-DNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred eEEEEcc-CcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 9999975 46688899999999998775 455677889999999999999999999999999999999987654433
Q ss_pred ccccCccceeeeceeee-CCCCCccccCC-CCCcc--eEEecccceeee----EE-EeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 165 SCNLGFRSYEWDYRWMD-YPPQARDLKHP-CDQSV--ATYKGHSVLRTL----IR-CHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~-~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
.+.-. +-+..+.... +|-+...+..+ ..+.+ ..++|....... .. ...+...||.|.++.+.++|+.++
T Consensus 385 Tfk~~--~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlY 462 (508)
T KOG0275|consen 385 TFKPL--GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLY 462 (508)
T ss_pred hccCC--CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEE
Confidence 32211 1111111111 12111111111 11111 122221110000 00 011233578899999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+...+|++..++..|+..+-.++-+|..+.|||=++||.+++|.
T Consensus 463 CF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 463 CFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999996
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=6.3e-26 Score=191.56 Aligned_cols=259 Identities=19% Similarity=0.267 Sum_probs=187.6
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
.|.=|-++.||++.+|.. +-...||+-.|.++.||.+|.+||+|+.+|.|+||+..++.....+...-..+.=+.|+|
T Consensus 81 TGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred ecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence 344568999999999883 335599999999999999999999999999999999999988877765556677778876
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc---
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL--- 168 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~--- 168 (303)
-+..|+.|+.||.+-+|.+. +......+.||..++++=.|.|+|+.++++..|++|++||+....+....+.
T Consensus 159 -~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 159 -RAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred -cccEEEeecCCCcEEEEECC----CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 68899999999999999874 2245678999999999999999999999999999999999875322111110
Q ss_pred -Cccceeee------------------------ceeeeCC--CC--------------------CccccCC-CCCcceEE
Q 022074 169 -GFRSYEWD------------------------YRWMDYP--PQ--------------------ARDLKHP-CDQSVATY 200 (303)
Q Consensus 169 -~~~~~~~~------------------------~~~~~~~--~~--------------------~~~~~~~-~~~~~~~~ 200 (303)
........ +.....+ |. .+..+.. .+..+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 00000000 0000000 00 0000000 01111111
Q ss_pred eccc-cee-------eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC
Q 022074 201 KGHS-VLR-------TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 201 ~~~~-~~~-------~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
+-.. ..+ .+.++. |-+ ..+|++++.+|.|+.||.++|+++.++.+|..+|.+++.+|++++++|+|.
T Consensus 314 D~a~~~~R~~c~he~~V~~l~----w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 314 DLAASTLRHICEHEDGVTKLK----WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ecccchhheeccCCCceEEEE----EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 1100 000 011111 223 468999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecC
Q 022074 273 DGDVVRWEFP 282 (303)
Q Consensus 273 Dg~i~~Wd~~ 282 (303)
|++.++|+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999975
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.4e-27 Score=188.51 Aligned_cols=202 Identities=22% Similarity=0.381 Sum_probs=160.4
Q ss_pred cceEEEEEcCC-CCEEEEeeCCCeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 40 FGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 40 ~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.+++.++|+++ .+.+++++.||+++|||+... ..+..++.|...|.++-|++.....++++|+|++|+|||.. .
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~----r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN----R 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC----C
Confidence 46999999975 568999999999999997543 34456788999999999988878889999999999999953 3
Q ss_pred CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
...+.++.||...|....|+| ..+++++++.|+++++||+|..-. .
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~------------------------------ 183 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---F------------------------------ 183 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---e------------------------------
Confidence 345678999999999999988 578999999999999999875311 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEeCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDG 274 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg 274 (303)
..+..|.. .++.|-++- .+...|+||+.|+.|++||+++.+ ++.++.+|.-.|..++|||.. .+|||++.|.
T Consensus 184 -~~i~ah~~--Eil~cdw~k---y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 184 -MSIEAHNS--EILCCDWSK---YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred -eEEEeccc--eeEeecccc---cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 00111211 122232221 245789999999999999998754 588899999999999999986 5899999999
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++||....
T Consensus 258 T~riw~~~~~ 267 (311)
T KOG0277|consen 258 TVRIWDPERQ 267 (311)
T ss_pred eEEecccccc
Confidence 9999998644
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-27 Score=188.74 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=167.0
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.-|+..|+++.|++ +++.++++|+|++|+||+....+.+.++.+|...|....|+|..+++|+++|.|+++++||++..
T Consensus 101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 47999999999997 56678899999999999999998888999999999999999988999999999999999998743
Q ss_pred cCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
++..- +..|...+.+++|+. +.+.++||+.|+.||.||+|..+.
T Consensus 181 ---gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~------------------------------- 225 (311)
T KOG0277|consen 181 ---GKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT------------------------------- 225 (311)
T ss_pred ---CceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------------------------------
Confidence 34343 567888899999886 556789999999999999997532
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEe
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSS 271 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s 271 (303)
.+..+.||....- +..++|- ...+||+++.|-+++|||...++ .+.+.+.|+.-+..++||+.. .++|+.+
T Consensus 226 --pl~eL~gh~~AVR--kvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 226 --PLFELNGHGLAVR--KVKFSPH---HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred --cceeecCCceEEE--EEecCcc---hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 2445556654322 2233331 24679999999999999998654 356678899999999999964 5899999
Q ss_pred CCCCEEEeec
Q 022074 272 WDGDVVRWEF 281 (303)
Q Consensus 272 ~Dg~i~~Wd~ 281 (303)
.|..+.+|+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999995
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.6e-26 Score=206.56 Aligned_cols=201 Identities=23% Similarity=0.519 Sum_probs=164.9
Q ss_pred cceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
++|.+++|+..|++|+.|+. -|.+-||+.....-+.+.++|...+++++++| +++++++|+.||.|++||.. .+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~----Sg 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQ----SG 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEecc----Cc
Confidence 46999999999999999875 48999999999888888899999999999975 58999999999999999964 44
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....+|..|+.+|+.+.|...++.+++.+-||+||.||+.+-.. ++.+. .| . .+
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-------fRTft-------~P-~----------p~- 436 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-------FRTFT-------SP-E----------PI- 436 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-------eeeec-------CC-C----------ce-
Confidence 55678999999999999999999999999999999999864221 11100 00 0 00
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
.. .+....|.|.++..|+.|. .|++|+.++|+++-.+++|++||.+++|+|++..|||+|+|.+++
T Consensus 437 ----------Qf---scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 437 ----------QF---SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ----------ee---eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 00 0111235577777777665 599999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
+||+-..
T Consensus 504 iW~if~s 510 (893)
T KOG0291|consen 504 IWDIFSS 510 (893)
T ss_pred EEEeecc
Confidence 9997544
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=183.66 Aligned_cols=238 Identities=20% Similarity=0.242 Sum_probs=178.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|..+|.++.|+.||++.++++.|.+|+||+...+.++++..+|...|..++.+.+ +..|++|+.|..|.+||..
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~--- 89 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVN--- 89 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcc---
Confidence 477889999999999999999999999999999999999999999999999988654 5678899999999999985
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC-ccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (303)
+++..+.+.+|...|+.+.|+.+...+++|+.|.++|+||-|.........+..... .+. ...... ..+....+
T Consensus 90 -TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~--Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 90 -TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVS--SIDVAEHEIVAGSVD 164 (307)
T ss_pred -cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--cee--EEEecccEEEeeccC
Confidence 667888999999999999999999999999999999999998654322221110000 000 000000 11111122
Q ss_pred CcceEEecccc---eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC--CeEEEEECCCCCeEEE
Q 022074 195 QSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVS 269 (303)
Q Consensus 195 ~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~--~I~~v~~sp~~~~las 269 (303)
..+.+++-... ..+.-.-..+..|+++++.++.++.|+++++.|-++|++++.+++|.. .=.+++++.....+++
T Consensus 165 GtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred CcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 22222221100 000000012345889999999999999999999999999999999975 3457788888889999
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
||+||.+.+||+-
T Consensus 245 gSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 245 GSEDGKVYFWDLV 257 (307)
T ss_pred ccCCceEEEEEec
Confidence 9999999999975
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-26 Score=212.18 Aligned_cols=229 Identities=23% Similarity=0.326 Sum_probs=178.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|++||..+.|+|++..+++|+.|-+|++|+.++.+...++.+|.+-|..+.|++. -.+++|+|.|.+||+|+..
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq---- 123 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ---- 123 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEecc----
Confidence 79999999999999999999999999999999999998999999999999999876 4589999999999999974
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC-
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ- 195 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 195 (303)
....+.++.||..-|.|..|+|...+++|+|-|.+||+||+..++....... +.+-..+. .+....+....+.
T Consensus 124 sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg---~~e~~~~~---~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG---SLEDQMRG---QQGNSDLFGQTDAV 197 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC---Cchhhhhc---cccchhhcCCcCee
Confidence 4566888999999999999999888999999999999999875433221111 11100000 0000111111111
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
....+.||.. .....+|+|.-.++++|+.|..|++|....-+ ++-+..+|..+|.++-|+|....++|.|+|
T Consensus 198 VK~VLEGHDR------GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 198 VKHVLEGHDR------GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED 271 (1202)
T ss_pred eeeeeccccc------ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC
Confidence 1233455542 22334577777899999999999999985433 355667999999999999999999999999
Q ss_pred CCEEEeecC
Q 022074 274 GDVVRWEFP 282 (303)
Q Consensus 274 g~i~~Wd~~ 282 (303)
++|++||..
T Consensus 272 ksirVwDm~ 280 (1202)
T KOG0292|consen 272 KSIRVWDMT 280 (1202)
T ss_pred ccEEEEecc
Confidence 999999974
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=5e-25 Score=193.81 Aligned_cols=250 Identities=22% Similarity=0.324 Sum_probs=176.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.-|.-=|+|+.|+|||+++++.+.||++.+||-+++.....+. +|++.|.++.|+|+ .+.|+|++.|.++++||..
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVS 265 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEee
Confidence 4677789999999999999999999999999999999888877 89999999999764 7899999999999999964
Q ss_pred cccC---------------------------------------CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 113 CLNV---------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 113 ~~~~---------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.... ...+...+.||..+|+++..++++.+|++|+.||.|.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 2111 0123445679999999999999999999999999999
Q ss_pred EEEcccccCCccc-----c----------cCccceeee--ceee-------------eCCCCCccccCCCC---------
Q 022074 154 LWDIRKMSSNASC-----N----------LGFRSYEWD--YRWM-------------DYPPQARDLKHPCD--------- 194 (303)
Q Consensus 154 lWdl~~~~~~~~~-----~----------~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~--------- 194 (303)
-||.......... + .......|+ ++.. +++.+.+.+....+
T Consensus 346 ~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 346 SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 9998764321100 0 001111122 0111 11111111111111
Q ss_pred CcceEEecccceeee-EEEe-eeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 195 QSVATYKGHSVLRTL-IRCH-FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
..+..++........ +... ...+++|+++++|.|++|+.+++|.+..++. ...+..|.++|++++||||+.+||++
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence 111111111111110 0111 1234789999999999999999999975442 33456799999999999999999999
Q ss_pred eCCCCEEEeecCCCCc
Q 022074 271 SWDGDVVRWEFPGNGE 286 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~~~ 286 (303)
+..+.+.+||++...+
T Consensus 506 Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 506 DASRKVVLYDVASREV 521 (603)
T ss_pred ccCCcEEEEEcccCce
Confidence 9999999999886544
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-26 Score=205.88 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.||.++.|-+..+++++|+.|..||||+..++..+..+.+|.+-+.+++.+|.. .+++|+|.|-+|++||.. ....
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we---~~wa 131 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWE---NEWA 131 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeecc---Ccee
Confidence 479999999999999999999999999999999999999999999999998754 488899999999999974 3445
Q ss_pred cceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 120 PAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....+.||..-|..++|+| |.+.+++++-|++|++|.+....++ .
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----------------------------------f 177 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----------------------------------F 177 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----------------------------------e
Confidence 5678999999999999998 4578999999999999998653332 2
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
+++||..-..++.... -.|..+|++|+.|.+|+|||..+..++.++++|...|..+.|+|.-++++|||+||++++
T Consensus 178 Tl~gHekGVN~Vdyy~----~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYT----GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred eeeccccCcceEEecc----CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence 3344432222222111 134569999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 022074 279 WEFP 282 (303)
Q Consensus 279 Wd~~ 282 (303)
|.-.
T Consensus 254 Whs~ 257 (794)
T KOG0276|consen 254 WNSK 257 (794)
T ss_pred ecCc
Confidence 9843
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.6e-26 Score=180.63 Aligned_cols=250 Identities=23% Similarity=0.379 Sum_probs=187.9
Q ss_pred ccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 19 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+..|.-++|-=. -.+.||...|..++.+.|...+++|+.|..|.+||+.+|+...++.+|.+.|+.++|+ +....++
T Consensus 41 vrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~ 117 (307)
T KOG0316|consen 41 VRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVA 117 (307)
T ss_pred EEeeccccccee--eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEE
Confidence 344545444322 3568999999999999999999999999999999999999999999999999999996 5678999
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc-cCccceeeec
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN-LGFRSYEWDY 177 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~~~~~~~~~ 177 (303)
||+.|.++++||-|+. ..+|++.+....+.|.++.+. ++.|++|+.||++|.||+|.......+. .+..+..+..
T Consensus 118 SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSK 193 (307)
T ss_pred eccccceeEEEEcccC--CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecC
Confidence 9999999999998754 446788888888999999874 5689999999999999999764432211 0011111110
Q ss_pred e-ee----eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 178 R-WM----DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 178 ~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
. .+ ......+.+--.....+..++||....+-..|.+.. ....+++|++||.+++||+.....+..+..|.
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence 0 00 000111111112233466788898888777777654 35679999999999999999999998898888
Q ss_pred CC-eEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 253 SP-VRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 253 ~~-I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.. |.+++++|.-.-|.++.. +....|.
T Consensus 270 ~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 270 TVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeEEeeecccCccceeEecC-Cceecee
Confidence 87 999999999887777764 4555665
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.3e-24 Score=186.03 Aligned_cols=256 Identities=28% Similarity=0.410 Sum_probs=187.0
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 93 (303)
+.+..+.+|+.-++... ....+|..++.++.|+++++.+++++.||.|++||+.+++....+..|...+.++.|.++
T Consensus 28 ~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~- 104 (289)
T cd00200 28 SGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD- 104 (289)
T ss_pred ecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-
Confidence 34677888887555422 234688999999999999999999999999999999988777778889889999999764
Q ss_pred CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
++++++++.|+.+++||++ ..+....+..|...+.++.+++++.++++++.|+.+++||++.......... .
T Consensus 105 ~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----~ 176 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----H 176 (289)
T ss_pred CCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----C
Confidence 6788888889999999975 2344556667888999999999988888888899999999975433222111 1
Q ss_pred eeeceeeeCCCCCccccC-CCCCcceEEecccc-eeeeE----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE
Q 022074 174 EWDYRWMDYPPQARDLKH-PCDQSVATYKGHSV-LRTLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~ 247 (303)
...+..+.+.+....+.. ..+..+..++-... ..... .......+++++.++++++.||.|++||..+++.+..
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 111222333333322211 11223333322110 00000 0112344677888888888899999999999888888
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+..|..+|.+++|+|++++|++++.|+.+++|+
T Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 889999999999999999999999999999996
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=180.44 Aligned_cols=273 Identities=18% Similarity=0.237 Sum_probs=186.0
Q ss_pred EEEE---EccCchhhccccccccccCcCcc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEE
Q 022074 5 VHIV---DVGSGTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRI 77 (303)
Q Consensus 5 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~ 77 (303)
.||. ++-+++-|-.+.+|+.--|.... ..-+.||+..|.+++|+|.|++|+++|.|.++.||.-..+. ....+
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 4555 67778888888888875444443 23335999999999999999999999999999999776554 34568
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+|...|.+++|+ .++++|++++.|++|-+|..... .+-.....++.|.-.|..+.|+|...+|+++|.|.+|++|+-
T Consensus 102 EGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~ded-dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 102 EGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDED-DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred eccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCC-CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence 8999999999996 56999999999999999987521 223456678999999999999999899999999999999975
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEecccceee-eEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
... ....+...+...+.++-...|.+.+..+.... +..+..+.....+.. ..+-.+...+. ...+++++.|+.|+
T Consensus 180 ~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 180 EDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIR 256 (312)
T ss_pred cCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEE
Confidence 421 11111000111111222234444443333222 222222221110000 00111111122 34689999999999
Q ss_pred EEECCCC------eEE-EEeecCCCCeEEEEECCC-CCeEEEEeCCCCEEEeecC
Q 022074 236 VYDLVSG------EQV-AALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 236 iwd~~~~------~~~-~~~~~h~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~ 282 (303)
++..... +.+ +.-..|...|++++|+|. .+.|++++.||.+++|.+.
T Consensus 257 lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 257 LFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9976532 111 123478899999999996 6799999999999999874
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.7e-26 Score=182.99 Aligned_cols=234 Identities=24% Similarity=0.334 Sum_probs=173.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
-+..||.+.|.+++|+.+|..+++|+.|+++++|+++...... ...+|.+.|..++|.|+++++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3557999999999999999999999999999999998875443 34679999999999999999999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc--eeeece----eeeCC-
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS--YEWDYR----WMDYP- 183 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~--~~~~~~----~~~~~- 183 (303)
.+.. ++........+.+ .+.++|+|++++.++.|..|.+.|.|..+........+.. ..|... .+...
T Consensus 94 ~r~~----k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSG----KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccC----cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 8733 3333333333444 4568999999999999999999999874432221111111 111100 00000
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
.....+..+....+.+++.|... ++...|+|+|++||+|+.|..+.+||+...-++..+.-+.-||..+.||.|
T Consensus 169 G~v~ILsypsLkpv~si~AH~sn------CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSN------CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ceEEEEeccccccccccccCCcc------eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 01122333344455556655521 223458899999999999999999999887778888889999999999999
Q ss_pred CCeEEEEeCCCCEE
Q 022074 264 QPMLVSSSWDGDVV 277 (303)
Q Consensus 264 ~~~las~s~Dg~i~ 277 (303)
|++||+||+|.-|-
T Consensus 243 g~~lASaSEDh~ID 256 (313)
T KOG1407|consen 243 GRMLASASEDHFID 256 (313)
T ss_pred cceeeccCccceEE
Confidence 99999999998774
No 48
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=194.82 Aligned_cols=236 Identities=22% Similarity=0.344 Sum_probs=180.2
Q ss_pred EEEccCchhhccccccccccCcCcc-c-----c--cCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCce----
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFS-A-----A--DDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL---- 73 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~---- 73 (303)
|.+|..++...-+-|++...=..-. + + ...||+..=++++|++... .+++|+.|++|.+||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 3456666666666666654322111 1 1 2258998788899998644 799999999999999976543
Q ss_pred ---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCC
Q 022074 74 ---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 149 (303)
Q Consensus 74 ---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D 149 (303)
...+.+|...|+.++|++...++|++++.|+.+.|||+|.. +.++.....+|...|++++|+|- +..|||||.|
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 23467899999999999888889999999999999999962 44566677889999999999984 5668999999
Q ss_pred CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe
Q 022074 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 150 ~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~ 229 (303)
++|+|||+|.+.. ++.++.+|.. .+....|+|. ....||+.+
T Consensus 295 ~tV~LwDlRnL~~---------------------------------~lh~~e~H~d--ev~~V~WSPh---~etvLASSg 336 (422)
T KOG0264|consen 295 KTVALWDLRNLNK---------------------------------PLHTFEGHED--EVFQVEWSPH---NETVLASSG 336 (422)
T ss_pred CcEEEeechhccc---------------------------------CceeccCCCc--ceEEEEeCCC---CCceeEecc
Confidence 9999999997643 1223333332 2333344442 356899999
Q ss_pred CCCeEEEEECCCC--------------eEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSG--------------EQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~--------------~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~ 282 (303)
.|+.+.+||+..- +++....+|+..|.+++|+|..+ .++|+++|+.+++|+..
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999998531 34567789999999999999998 58999999999999976
No 49
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=184.75 Aligned_cols=231 Identities=21% Similarity=0.360 Sum_probs=163.4
Q ss_pred CCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCC-CceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 35 DGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-NKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.+..+..|.+|+|||. ...+++||+||+||+|++.. |... +....|.++|.+++|+ ++++.+++|+.|+++++||+
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-cCCceEEeeccCCceEEEEc
Confidence 3555666999999995 44566899999999999987 3433 3456799999999996 56788999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCC--EEEEEeCCCcEEEEEcccccCCcccccCccceeeecee----------
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW---------- 179 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~---------- 179 (303)
.+. +...+..|.++|..+.|-+... .|+|||.|++||.||+|...+.....+..+.+..+...
T Consensus 102 ~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred cCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 632 3445667999999888866554 79999999999999999876666665555554433210
Q ss_pred ------eeCCCC-CccccCCC---CCcceE-----------Eecc----------cceeeeEEEeee-------------
Q 022074 180 ------MDYPPQ-ARDLKHPC---DQSVAT-----------YKGH----------SVLRTLIRCHFS------------- 215 (303)
Q Consensus 180 ------~~~~~~-~~~~~~~~---~~~~~~-----------~~~~----------~~~~~~~~~~~~------------- 215 (303)
+.-++. -+.+..+- -++++. ..|. .......+||.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 001111 00000000 001111 1110 011123455552
Q ss_pred eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
..|+|....|+|+|.||++.+||-..+.++++.+.|..||++++|+.+|.++|-+-
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 34777778899999999999999999999999999999999999999999888664
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-25 Score=190.19 Aligned_cols=248 Identities=21% Similarity=0.258 Sum_probs=168.9
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC--CcEEEEecCCCeEEEEcC
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~lWd~ 111 (303)
..--|...|.++... +++|++|++||++|+||... +...++.+|.+.+..++|..++ ...|++++.|.++++|..
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 334677788888777 78999999999999999854 4567889999999999884332 346999999999999987
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc--CCccccc------------Ccc------
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS--SNASCNL------------GFR------ 171 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~--~~~~~~~------------~~~------ 171 (303)
............-.||..+|-+++..+++..+++|+.|..+++|+..... .....+. ..+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 53322222223334999999999999999999999999999999932211 0000000 000
Q ss_pred -ceeeeceeeeCCCCCccccCCCCCcceEEecccc----eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---
Q 022074 172 -SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--- 243 (303)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--- 243 (303)
.+...+....+++....+....+-.+..++-... ..+.-+..++..+++...+|++|+.|..|++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 0001111122222222222222222333321110 11111233445577888999999999999999998774
Q ss_pred EEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
....|.+|+..|.++.|||... +|+|++.|+++++||+...
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 2457789999999999999875 6999999999999999864
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1e-24 Score=214.77 Aligned_cols=226 Identities=17% Similarity=0.261 Sum_probs=171.1
Q ss_pred Cchhhcccccccccc----CcCcc-cccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 12 SGTMESLANVTEIHD----GLDFS-AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
+|+.|..+.||+.-. +.... +.....+...|.+++|++ ++.+|++++.||+|+|||+.+++....+.+|.+.|.
T Consensus 500 tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~ 579 (793)
T PLN00181 500 TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579 (793)
T ss_pred EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence 456677888887522 11110 111123446799999997 478999999999999999999988888889999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeC-CCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+++|++.++++|+||+.|++|++||++. ......+..+ ..+.++.+. +++.+|++|+.|+.|++||++....
T Consensus 580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~----~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-- 652 (793)
T PLN00181 580 SIDYSSADPTLLASGSDDGSVKLWSINQ----GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-- 652 (793)
T ss_pred EEEEcCCCCCEEEEEcCCCEEEEEECCC----CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--
Confidence 9999876788999999999999999863 2334444433 568888884 5789999999999999999874221
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC--
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-- 242 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-- 242 (303)
.+..+.+|......+ .|. ++.++++++.|++|++||+..+
T Consensus 653 -------------------------------~~~~~~~h~~~V~~v------~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 653 -------------------------------PLCTMIGHSKTVSYV------RFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred -------------------------------cceEecCCCCCEEEE------EEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 011222232211111 233 4678999999999999999743
Q ss_pred ----eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 243 ----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 243 ----~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.+..+.+|...++.++|+|++++|++|+.|+.+++|+..
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 5677889999999999999999999999999999999964
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2.4e-24 Score=184.38 Aligned_cols=239 Identities=25% Similarity=0.408 Sum_probs=178.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|+.+|.+++|+|+++.+++++.||.+++|++.++.....+..|...+..+.|.++ ++.+++++.|+.|++||...
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~-- 82 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLET-- 82 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCc--
Confidence 489999999999999999999999999999999988877778889889989999754 57899999999999999752
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-C
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (303)
......+..|...+.++.+.+++.++++++.|+.+++||++......... .....+..+.+.+....+.... +
T Consensus 83 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 83 --GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred --ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC
Confidence 23455667888899999999998888888889999999997432221111 0111122233333333332222 3
Q ss_pred CcceEEecccc-eeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEE
Q 022074 195 QSVATYKGHSV-LRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las 269 (303)
..+..++.... ...... ......++++++.+++++.|+.|++||..+++.+..+..|..++.+++|+|++.++++
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 33333322110 000111 1123446788888999999999999999998888888889999999999999999999
Q ss_pred EeCCCCEEEeecCC
Q 022074 270 SSWDGDVVRWEFPG 283 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~ 283 (303)
++.|+.+++|++..
T Consensus 237 ~~~~~~i~i~~~~~ 250 (289)
T cd00200 237 GSEDGTIRVWDLRT 250 (289)
T ss_pred EcCCCcEEEEEcCC
Confidence 98899999999864
No 53
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=1.9e-25 Score=194.05 Aligned_cols=236 Identities=22% Similarity=0.390 Sum_probs=178.9
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCc--eEE------------EEecccCCeEEEEEccCCCcEEEEe
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK--LSL------------RILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~--~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
-+|+.+|.+++|+|-.. .+++|+.|-+.|+|++.... ... +-...+..|++++|+. +++.|++|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEe
Confidence 35999999999999666 89999999999999997511 100 1112346899999975 58999999
Q ss_pred cCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 101 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 101 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+.||.+|+|+. .+..+..+..|.++|.++.++..|+||++++.|+++.+||...........+.... ..++.|+
T Consensus 254 ~~~G~~riw~~-----~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDGEARIWNK-----DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQ 327 (524)
T ss_pred ecCcEEEEEec-----CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccceEEe
Confidence 99999999995 45567788889999999999999999999999999999998654322222211111 1222222
Q ss_pred eC------CCC--CccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 181 DY------PPQ--ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 181 ~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
.. .++ ..-.+...++++.++.||......++ |.|.+++|++++.|++++||..........+.+|+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk------~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK------WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE------ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 21 111 11123344667778888876554443 56779999999999999999998888888899999
Q ss_pred CCeEEEEECCCCC---------eEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPSQP---------MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~~~---------~las~s~Dg~i~~Wd~~~~ 284 (303)
..|..+.|||+++ .+++++.|+++++||+...
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 9999999999864 8999999999999998643
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-24 Score=178.50 Aligned_cols=236 Identities=21% Similarity=0.314 Sum_probs=176.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC--CCeEEEEcCcccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLN 115 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~ 115 (303)
....|.++.|+++|..+++++.|.+++|||..+++....+..++.+|..++|.+... .++.++. |.+||+-++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~--- 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLH--- 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEee---
Confidence 456799999999999999999999999999999999988888888999999976544 4444544 8899988864
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.++.++.|.||...|+.+..+|-+..+++++.|++||+||+|..++..-.....+. ..++.|++-.++..+..
T Consensus 89 -dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p------i~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 -DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP------IAAFDPEGLIFALANGS 161 (311)
T ss_pred -cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc------ceeECCCCcEEEEecCC
Confidence 45678899999999999999999999999999999999999965443322221111 12233333333222222
Q ss_pred -cceEE-----ecccceeeeE----EEee-eeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe---EEEEEC
Q 022074 196 -SVATY-----KGHSVLRTLI----RCHF-SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWH 261 (303)
Q Consensus 196 -~~~~~-----~~~~~~~~~~----~~~~-~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I---~~v~~s 261 (303)
.+..+ +...+....+ .+.+ ...|||+|++++.....+.+++.|.-.|..+..+..+...- .+..|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 22211 1111111111 1111 23589999999999999999999999999988888775433 688999
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
||++++.+++.||+|.+|++...
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 99999999999999999998644
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=5.4e-25 Score=185.63 Aligned_cols=255 Identities=16% Similarity=0.261 Sum_probs=192.0
Q ss_pred cCchhhccccccccccCc-CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 11 GSGTMESLANVTEIHDGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
-+|+||-.|.||++-+|. +. ..+||-.-|..+++|+--.++.+++.|+.|+-||+...+.+..+.+|-..|.|+..
T Consensus 167 ~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~l 243 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDL 243 (460)
T ss_pred EecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEec
Confidence 368899999999998887 44 56899999999999999999999999999999999999988888999999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+| .-++++||+.|.++|+||.| +...+..+.||...|..+.+.+-+.+++||+-|++||+||++..+.-.....
T Consensus 244 hP-Tldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~- 317 (460)
T KOG0285|consen 244 HP-TLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH- 317 (460)
T ss_pred cc-cceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-
Confidence 75 46799999999999999998 3445778999999999999988888999999999999999986543211111
Q ss_pred ccceeeeceeeeCCCCCcccc-----------CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 170 FRSYEWDYRWMDYPPQARDLK-----------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
..-.++.+...|....+. .+...-+..+.+|..+...+. .. +..++++|++.|.+.+||
T Consensus 318 ---hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~------~n-sD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 318 ---HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLS------VN-SDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred ---ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeee------ec-cCceEEEcCCceEEEEEe
Confidence 011112222222222121 122222333445543332221 12 235789999999999999
Q ss_pred CCCCeEEEEe---e-----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 239 LVSGEQVAAL---K-----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 239 ~~~~~~~~~~---~-----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++|-....+ . ..+..|.+.+|...+..|+||..|.+|++|.-...
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 9988533222 1 12457999999999999999999999999986544
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=192.87 Aligned_cols=193 Identities=24% Similarity=0.440 Sum_probs=158.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
-+|+|+.+. .+.+++|..|++|+|||.++-.....+.+|++.|-|+.|. ..+++|||.|.+|++||.. +++
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~----tge 268 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVN----TGE 268 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEecc----CCc
Confidence 379999987 3469999999999999999888778899999999999993 4599999999999999975 667
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
+..++.+|.++|..+.|+. .+++|++.|+++.+||+...... . ....
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t------------------------------~rrV 315 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-T------------------------------LRRV 315 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-H------------------------------HHHH
Confidence 7888889999999998864 49999999999999998643210 0 1112
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+.||...... . ..+.+|+++++.|.+|++|++.+++.+.++.+|+..|.++.+ .+++++|||.|.+|++|
T Consensus 316 LvGHrAaVNv------V--dfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 316 LVGHRAAVNV------V--DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred Hhhhhhheee------e--ccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence 2333211111 1 125679999999999999999999999999999999998877 78999999999999999
Q ss_pred ecCCC
Q 022074 280 EFPGN 284 (303)
Q Consensus 280 d~~~~ 284 (303)
|+...
T Consensus 386 di~~G 390 (499)
T KOG0281|consen 386 DIECG 390 (499)
T ss_pred ecccc
Confidence 98754
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=190.25 Aligned_cols=263 Identities=24% Similarity=0.341 Sum_probs=182.4
Q ss_pred EEEEEccCc-------hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q 022074 5 VHIVDVGSG-------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 5 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
||.+--+.+ -||..|.+|+...++-.--....|-.++|.++.|.++++.+++++.|+.+++|++...++..++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 455555544 5889999999977772213455788889999999999999999999999999999999998999
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+|++.|+++.|.. ....+++|+.|.++++||+....... ..+ ....+..+..+ ...+++|-.|++||+||.
T Consensus 258 sGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~k---t~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSK---TVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred cccccceeeehhhc-cccceeeccccchhhhhhhhhhheec---ccc--ccccccceEec--ceeeeecccccceEEEec
Confidence 99999999999953 34458999999999999985211111 112 22333344333 446889999999999999
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccc-cCCCCCcceEEeccccee------eeEEEe--e-eeeeeCCCeEEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHSVLR------TLIRCH--F-SPVYSTGQKYIYT 227 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~--~-~~~~s~~~~~lat 227 (303)
|..........+.+.. .+........+ ....+..+..++.....+ ...++. + ..+|||++.|+|+
T Consensus 330 Rs~~~~~sv~~gg~vt-----Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 330 RSADKTRSVPLGGRVT-----SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred cCCceeeEeecCccee-----eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 8765443333221111 11111111111 111122222222211100 001111 1 2458999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCCC--eEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 228 GSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~h~~~--I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
||.||.|+||++.++++.+.++....+ |++++|+|.|..|++++-++.+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999998888755544 99999999999999999999999994
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=201.12 Aligned_cols=237 Identities=21% Similarity=0.284 Sum_probs=160.3
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC--------------------------------Cc------------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--------------------------------NK------------ 72 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~--------------------------------~~------------ 72 (303)
+|+.+|.++.||+||++||+||.|+.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 9999999999999999999999999999997755 00
Q ss_pred ----------------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEe
Q 022074 73 ----------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 136 (303)
Q Consensus 73 ----------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~ 136 (303)
....+.+|.+.|-.+.|+ + .++|+|++.|.|||||.+.. ....++| .|.+-|+|++|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-K-n~fLLSSSMDKTVRLWh~~~----~~CL~~F-~HndfVTcVaF 417 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-K-NNFLLSSSMDKTVRLWHPGR----KECLKVF-SHNDFVTCVAF 417 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccc-c-CCeeEeccccccEEeecCCC----cceeeEE-ecCCeeEEEEe
Confidence 112357899999999996 3 46899999999999999752 2345555 59999999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc-ceEEe--cccceee-eEE
Q 022074 137 RG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYK--GHSVLRT-LIR 211 (303)
Q Consensus 137 ~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~ 211 (303)
+| |++||++|+-|+.||||++....... ...+..-+..+.|.|+++.....+-.. +..+. +..+... .+.
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~-----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVD-----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEe-----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 98 78999999999999999875422100 000000112233444444332221111 00000 0000000 000
Q ss_pred --------Ee--eeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 212 --------CH--FSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 212 --------~~--~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
+. ....|.| +...++..+.|..|||+|.++.+++..|+++.. .=....|+.||++|+++++|..+++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 00 0011222 223467778999999999988888888886542 3457789999999999999999999
Q ss_pred eecCCCC
Q 022074 279 WEFPGNG 285 (303)
Q Consensus 279 Wd~~~~~ 285 (303)
|+.+...
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9986543
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-24 Score=192.99 Aligned_cols=266 Identities=21% Similarity=0.280 Sum_probs=191.7
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 85 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~ 85 (303)
.|-||+|.-=|||+- .+|. -....+.+ +..|.++.|+++|.+|++|..+|.|.|||..+.+....+.. |...|-
T Consensus 190 ~laValg~~vylW~~---~s~~-v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSA---SSGS-VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred eEEEEecceEEEEec---CCCc-eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence 467788877777732 1222 00111112 56699999999999999999999999999998877777777 999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+++|+ ...+.+|+.|+.|..+|++.... ....+.+|...|..+.+++++.++++||.|+.+.|||.........
T Consensus 265 ~laW~---~~~lssGsr~~~I~~~dvR~~~~---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 265 SLAWN---SSVLSSGSRDGKILNHDVRISQH---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred EEecc---CceEEEecCCCcEEEEEEecchh---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 99996 56899999999999999985432 2224778999999999999999999999999999999854322221
Q ss_pred cccCccceeeeceeeeCCCCCccccCC----CCCcceEEecccc--eeee--EEEeeeeeeeCCCeEEEE--EeCCCeEE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHP----CDQSVATYKGHSV--LRTL--IRCHFSPVYSTGQKYIYT--GSHDSCVY 235 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~--~~~~~~~~~s~~~~~lat--g~~dg~i~ 235 (303)
+..+..+++.+.++|....+... .++.+.-++-... +..+ -....+..+++..+.|++ |..+..|.
T Consensus 339 ----~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 339 ----FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ----EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 22333445556665544333221 1233333221111 0000 001223456666655555 45788999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
||+..+.+++..+.+|..+|..+++||||..+++|+.|.++++|++-...+.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPK 466 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCc
Confidence 9999999999999999999999999999999999999999999998765333
No 60
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.6e-24 Score=185.03 Aligned_cols=239 Identities=21% Similarity=0.354 Sum_probs=183.2
Q ss_pred CchhhccccccccccCcCc---cc-----------ccCC--CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q 022074 12 SGTMESLANVTEIHDGLDF---SA-----------ADDG--GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~-----------~~~~--~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~ 75 (303)
+++-++.|.=|.+.+|++- ++ .-+. +|..-+.+++.|+||++|++|+.|..|.||+..+...+.
T Consensus 159 sask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~ 238 (479)
T KOG0299|consen 159 SASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK 238 (479)
T ss_pred ecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh
Confidence 5666777877888888732 11 1122 899999999999999999999999999999999999888
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
.+.+|-+.|.+++| ....+.+++++.|++|++|++.. ...+.++.||.+.|..++...-++.+-.|+.|+++++|
T Consensus 239 ~~~ghr~~V~~L~f-r~gt~~lys~s~Drsvkvw~~~~----~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAF-RKGTSELYSASADRSVKVWSIDQ----LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccccccceeeeee-ecCccceeeeecCCceEEEehhH----hHHHHHHhCCccceeeechhcccceEEeccccceeEEE
Confidence 88999999999999 45677899999999999999752 33466788999999999887777766677799999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
++.... .+ .+.++.....++. |- +...+++|+.+|.|.
T Consensus 314 Ki~ees-----ql------------------------------ifrg~~~sidcv~------~I-n~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 314 KIPEES-----QL------------------------------IFRGGEGSIDCVA------FI-NDEHFVSGSDNGSIA 351 (479)
T ss_pred eccccc-----ee------------------------------eeeCCCCCeeeEE------Ee-cccceeeccCCceEE
Confidence 983211 00 1111110011111 11 345799999999999
Q ss_pred EEECCCCeEEEEee-cC-----------CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCCCcccccc
Q 022074 236 VYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR 297 (303)
Q Consensus 236 iwd~~~~~~~~~~~-~h-----------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~~~~ 297 (303)
+|++-+.+++.+.. .| ..+|++++..|...++|||+.+|.+++|.+..+.-+..+++...++
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 99998888776653 23 1289999999999999999999999999998776666666554443
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=3.8e-23 Score=181.98 Aligned_cols=231 Identities=20% Similarity=0.330 Sum_probs=180.3
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
|+-||-|--- +-+|.+-=+|..- + +-.||...|++++|-|.-. ++++||.|++|.+|+-+.-+....+..|...|+
T Consensus 118 I~avGEGrer-fg~~F~~DSG~Sv-G-ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 118 IAAVGEGRER-FGHVFLWDSGNSV-G-EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEEecCccc-eeEEEEecCCCcc-c-eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 3444444322 4455544444433 2 2279999999999998755 699999999999998888777777888999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec---ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
++.|+|+ +++|+|++.||++.+||.+ ++...+.+. +|.++|.+++|+||+..++|++.|+++||||+...+.
T Consensus 195 ~VRysPD-G~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 195 CVRYSPD-GSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eEEECCC-CCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 9999865 8999999999999999976 444455555 7999999999999999999999999999999875432
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
......+ .......+.|.+. ...|++-+.+|+|.+++....
T Consensus 270 v~t~~~~---------------------------------~~v~dqqvG~lWq------kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 270 VSTWPMG---------------------------------STVEDQQVGCLWQ------KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred EEEeecC---------------------------------CchhceEEEEEEe------CCeEEEEEcCcEEEEecccCC
Confidence 2111000 0011112333332 457999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+..+.+|...|++++.+|++.+|.||+.||.|.-|+....
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 999999999999999999999999999999999999997543
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=5.8e-24 Score=180.55 Aligned_cols=228 Identities=23% Similarity=0.326 Sum_probs=173.4
Q ss_pred cCchhhccccccccccCcCcccccC--CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-----------------
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----------------- 71 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----------------- 71 (303)
=+|+||-++-.|.+=.|..--.... .||+.+|-+++-.++|..+++||+|.++.||+..+.
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 3678888888887744432211111 499999999999999999999999999999983221
Q ss_pred --------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE
Q 022074 72 --------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 143 (303)
Q Consensus 72 --------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 143 (303)
.....+.+|.++|.++.|.+ ...+.|+++|.+|+.||+... ..+..+. -..++.+++.++..++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg----~~~~~~~-~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG----GLKSTLT-TNKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc----cceeeee-cCcceeEeeccccccee
Confidence 02235679999999999954 678899999999999998632 2222222 23568899999999999
Q ss_pred EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 144 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
++|+.|+.+|+||.|.... .-....+.||......+. ++| .+..
T Consensus 316 ~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~nwVssvk--wsp---~~~~ 359 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKNWVSSVK--WSP---TNEF 359 (423)
T ss_pred eecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchhhhhhee--cCC---CCce
Confidence 9999999999999885321 012345566665433222 232 2456
Q ss_pred EEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 224 YIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+|++|+.|+++++||+++-+ .++.+.+|.+.|.++.|+. +..++|||.|++|+++.-.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 79999999999999999887 7999999999999999965 5689999999999998743
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=4e-25 Score=192.63 Aligned_cols=239 Identities=19% Similarity=0.351 Sum_probs=170.3
Q ss_pred CCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCC-CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 35 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..||+-+|.++.|.| .+..|++++.|+.|+||++-. +..+.++.+|..+|..++|+ +++..|+|++.|+++++||++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN-NCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc-ccCCeeeeeecceeeeeeccc
Confidence 369999999999999 899999999999999999977 66777899999999999996 568899999999999999975
Q ss_pred cccCCCccceeecccccC-eEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 113 CLNVKGKPAGVLMGHLEG-ITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~-v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
+++....+ |.+. +.++.+.|++ +.+++|+.|+.|+.||+|..+....+...... +....+-+......
T Consensus 289 ----TG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 289 ----TGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFI 358 (503)
T ss_pred ----cceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEe
Confidence 44444444 5554 6788999988 88999999999999999975432222111111 11112222222222
Q ss_pred C-CCCCcceEEecccc--eeeeE--EEeeee--eeeCCCeEEEEEeCCCeEEEEECCCC---eEEEEeecCC--CCeEEE
Q 022074 191 H-PCDQSVATYKGHSV--LRTLI--RCHFSP--VYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHT--SPVRDC 258 (303)
Q Consensus 191 ~-~~~~~~~~~~~~~~--~~~~~--~~~~~~--~~s~~~~~latg~~dg~i~iwd~~~~---~~~~~~~~h~--~~I~~v 258 (303)
. ..+..+..+.-... +..+. ..|..| ..+|++.++++-+.|.+|.++.+... .+.+.+++|. +.-..|
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 2 22223333322111 11110 112222 24688999999999999999987543 2345678886 456678
Q ss_pred EECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 259 SWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 259 ~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|||||++|++|+.||.+.+||..+.
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhh
Confidence 99999999999999999999998754
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.9e-24 Score=186.68 Aligned_cols=200 Identities=23% Similarity=0.397 Sum_probs=159.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|.-.|++++|..||+.+++|...|.|+|||.++......+.+|..+|..+.|++.+++.|++|+.|+.+++||+..
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--- 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--- 142 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---
Confidence 44556999999999999999999999999998776666668899999999999988889999999999999999862
Q ss_pred CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
......+.+|++.|.+.+++|. ++.++|||.||.||+||+|....
T Consensus 143 -a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------------------------------- 188 (487)
T KOG0310|consen 143 -AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------------------------------- 188 (487)
T ss_pred -cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---------------------------------
Confidence 2335578899999999999885 56789999999999999986421
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.+++....+..+ .+-|.|+.+|+++. ..+++||+.+| +++..+..|...|+|+.+..++..|+|||-|+
T Consensus 189 ~v~elnhg~pVe~v-------l~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 189 RVVELNHGCPVESV-------LALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eeEEecCCCceeeE-------EEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 11111111111111 13356788888864 46999999865 55666666999999999999999999999999
Q ss_pred CEEEeec
Q 022074 275 DVVRWEF 281 (303)
Q Consensus 275 ~i~~Wd~ 281 (303)
.+++||.
T Consensus 261 ~VKVfd~ 267 (487)
T KOG0310|consen 261 HVKVFDT 267 (487)
T ss_pred ceEEEEc
Confidence 9999983
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=9.8e-23 Score=172.34 Aligned_cols=238 Identities=16% Similarity=0.346 Sum_probs=170.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|+.+|++++.+|+.+.+++|+.|...+||+..++....++.+|++.|.++.|+. ++.+|+||+.+|.|++|+..
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s--- 136 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS--- 136 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc---
Confidence 59999999999999999999999999999999999998889999999999999976 48899999999999999965
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-C
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (303)
++.....+.+..+.+.++.|+|.++.|+.|+.||.+-+|.+..... ++. +.........-.+.|.++.+.... +
T Consensus 137 -tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 137 -TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKV-MSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred -cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce---eeE-ecCCCCCcccccccCCCceEEEEecC
Confidence 3333444545667799999999999999999999999999865211 110 111111111122334444433222 2
Q ss_pred CcceEEe---cccceeee------EEEe-------------------------------eee------------------
Q 022074 195 QSVATYK---GHSVLRTL------IRCH-------------------------------FSP------------------ 216 (303)
Q Consensus 195 ~~~~~~~---~~~~~~~~------~~~~-------------------------------~~~------------------ 216 (303)
..+..++ ++...+.. ..|. +.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 2333332 22222111 1100 000
Q ss_pred -eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 217 -VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 217 -~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++..-.+.|+|+.||+|.|||+....+.. .-.|+.+|..+.|-+ ..+|++++.||+++.||....
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 011222578899999999999997765443 446899999999998 889999999999999998754
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6e-24 Score=176.46 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=163.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC------------C------ceEEEEecccCCeEEEEEccCCCcEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------------N------KLSLRILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~------------~------~~~~~~~~h~~~v~~l~~~~~~~~~l 97 (303)
+-|+.++.+.+|++||..+++||.|..|+|+|++. + ..+.++..|.+.|+++.|+| ..+.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETIL 187 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheE
Confidence 47889999999999999999999999999999872 1 12345667899999999976 47899
Q ss_pred EEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
++|+.|++|++||..-.. ..+..+.+ .....|.+++|+|.|.+++.|..--++|+||+..-.+..+++
T Consensus 188 iS~srD~tvKlFDfsK~s-aKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------- 255 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTS-AKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------- 255 (430)
T ss_pred EeccCCCeEEEEecccHH-HHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----------
Confidence 999999999999974111 11222233 345689999999999999999999999999986422111100
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCC-CCe
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT-SPV 255 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~-~~I 255 (303)
| . ++|.... ....||+.+++-+||+.||.|++||-.++.++.++. .|. ..|
T Consensus 256 ------P--------d-------~qht~ai------~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 256 ------P--------D-------DQHTGAI------TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred ------c--------c-------cccccce------eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence 0 0 1111111 123367889999999999999999998888887774 564 589
Q ss_pred EEEEECCCCCeEEEEeCCCCEEEeecCCCCc
Q 022074 256 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~ 286 (303)
.+..|+.++++++|.+.|..+++|++...++
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999999999999999987754
No 67
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.2e-22 Score=189.12 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=145.1
Q ss_pred eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC----CccceeecccccCeE
Q 022074 57 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK----GKPAGVLMGHLEGIT 132 (303)
Q Consensus 57 gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~----~~~~~~~~~h~~~v~ 132 (303)
|+.++.|+||+.........+.+|.+.|.+++|+|..+++|+||+.|++|++||+...... ..+...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6678899999987776677788999999999998766789999999999999998632110 123446788999999
Q ss_pred EEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 133 FIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 133 ~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
++.|+|++.. |++++.|++|++||++..... ..+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----------------------------------~~i~~~~------- 168 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----------------------------------FQINMPK------- 168 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----------------------------------EEEecCC-------
Confidence 9999998876 579999999999999753211 0011000
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-----EEEECCCCCeEEEEeCCC----CEEEeecC
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-----DCSWHPSQPMLVSSSWDG----DVVRWEFP 282 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~-----~v~~sp~~~~las~s~Dg----~i~~Wd~~ 282 (303)
...+..|+++|++|++++.|+.|+|||+++++.+..+.+|.+.+. ...|++++.+|+|++.|+ ++++||+.
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 012334778999999999999999999999999989999987643 345678999999988774 79999987
Q ss_pred C
Q 022074 283 G 283 (303)
Q Consensus 283 ~ 283 (303)
.
T Consensus 249 ~ 249 (568)
T PTZ00420 249 N 249 (568)
T ss_pred C
Confidence 4
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.9e-24 Score=171.18 Aligned_cols=224 Identities=20% Similarity=0.268 Sum_probs=161.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEEEE-ccCCCcEEEEecCCCeEEEE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCF-GDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~v~lW 109 (303)
.+++|+.-|..+...--|++|++++.|++|+||+..... +..++.+|.++|..++| +|+.++.|+|++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 348899999998888889999999999999999997653 56678999999999999 55679999999999999999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
.-. +........+..|..+|+++++.|. |-.|++++.||.|.+.+.+..- ....+.........+....+.|...
T Consensus 86 ke~--~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 86 KEE--NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred ecC--CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecCcCC
Confidence 843 1233344566789999999998875 5778999999999999877531 0000000011111111111111100
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCC-
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQ- 264 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~- 264 (303)
. ..+-.+. + ...-+.|++||.|..|+||+..+++ +..+|++|.+.|.+++|.|.-
T Consensus 163 ~---------g~~~~~~-----------~--~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 163 P---------GSLVDQG-----------P--AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred C---------ccccccC-----------c--ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC
Confidence 0 0000000 0 0012569999999999999998763 345689999999999999974
Q ss_pred ---CeEEEEeCCCCEEEeecC
Q 022074 265 ---PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ---~~las~s~Dg~i~~Wd~~ 282 (303)
.+|||+|+||++.+|...
T Consensus 221 l~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCceeeEEecCCCcEEEEEec
Confidence 389999999999999965
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2e-23 Score=193.58 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=180.3
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+-|.-+++|+.-+|+.. .....||..+|.++.+..-+..+++|+.|.++++||..+|+....+.+|..-|.++...
T Consensus 223 ~~s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~- 300 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID- 300 (537)
T ss_pred ecCCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-
Confidence 5666777799999888755 33357999999999999878899999999999999999999999999999999998764
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+..+++|+.|.+|++|++. ++.....+.+|.++|.++... +.++++|+.|++|++||.+..
T Consensus 301 --~~~~~sgs~D~tVkVW~v~----n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------- 361 (537)
T KOG0274|consen 301 --PFLLVSGSRDNTVKVWDVT----NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------- 361 (537)
T ss_pred --CceEeeccCCceEEEEecc----CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-----------
Confidence 4578889999999999975 445566677799999999886 779999999999999998632
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCC-eEEEEee
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSG-EQVAALK 249 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~-~~~~~~~ 249 (303)
.++.++.||....+.+. .++ ..+++|+.|++|++||+.+. +++.++.
T Consensus 362 -----------------------~cl~sl~gH~~~V~sl~--------~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 362 -----------------------KCLKSLSGHTGRVYSLI--------VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred -----------------------eeeeeecCCcceEEEEE--------ecCcceEEeeeeccceEeecCCchhhhhhhhc
Confidence 24556677765443321 234 78999999999999999999 8899999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+|..-+.++.+ .+++|++++.|++|++||...
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 99988865554 678999999999999999753
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=168.93 Aligned_cols=252 Identities=21% Similarity=0.372 Sum_probs=183.0
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCc
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~--Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 95 (303)
.+.+-+..+|++.- ..+-++.++..+.|......++.++. |.+||..++.+.+-+..+.+|...|+.++.+|. ++
T Consensus 37 sl~LYd~~~g~~~~--ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-~d 113 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVK--TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-DD 113 (311)
T ss_pred eEEEEEcCCCceee--EeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC-CC
Confidence 44566666666442 12567778999999988888888887 889999999999988889999999999999875 58
Q ss_pred EEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc-cee
Q 022074 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR-SYE 174 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~-~~~ 174 (303)
.|+|++.|++||+||+|..+ ..+.+ +...-..+++.|+|-++|.+.....|+|||+|............. ...
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~----cqg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~ 187 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKK----CQGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE 187 (311)
T ss_pred eEEecccCCeEEeeEecCCC----CceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc
Confidence 99999999999999998432 22233 333344567899999999888877999999998643222211111 112
Q ss_pred eeceeeeCCCCCccccCCCCCc-c---eEEecc--------cceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQS-V---ATYKGH--------SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~--------~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
-++..++++++++.+...+... + ..++|. .... .......|+||++++++|+.||+|++|+++++
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~---~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG---NLPLSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC---CcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 2234567788877665443221 1 222222 1110 01123458899999999999999999999999
Q ss_pred eEEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 243 EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 243 ~~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+++..+.+ +..++.++.|+|.-.+++|++ .++.+|=...
T Consensus 265 ~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 265 KKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred cEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 99999887 789999999999999999996 5788887543
No 71
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=186.25 Aligned_cols=204 Identities=17% Similarity=0.260 Sum_probs=154.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-------------EEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-------------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.|.....++++..+++++.+..+..|+...+... ..+.+|.+.|.+++|+|.++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4555666677777777777777777876554322 136689999999999875678999999999999
Q ss_pred EEcCccccC---CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 108 VWDRRCLNV---KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 108 lWd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
+||+..... ...+...+.+|...|.++.|+|++ ++|++++.|++|++||++....
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--------------------- 160 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--------------------- 160 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---------------------
Confidence 999853211 123456788999999999999975 6899999999999999864211
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-eEEEEECC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP-VRDCSWHP 262 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~-I~~v~~sp 262 (303)
+..+.+|.... .+..|++++.+|++++.|+.|++||+++++.+..+.+|... +..+.|++
T Consensus 161 -------------~~~l~~h~~~V------~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 161 -------------VEVIKCHSDQI------TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred -------------EEEEcCCCCce------EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 11222222111 12346788999999999999999999999998888889764 45788999
Q ss_pred CCCeEEEEe----CCCCEEEeecCCC
Q 022074 263 SQPMLVSSS----WDGDVVRWEFPGN 284 (303)
Q Consensus 263 ~~~~las~s----~Dg~i~~Wd~~~~ 284 (303)
++..+++++ .|+++++||+...
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 988877765 4799999998643
No 72
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=180.50 Aligned_cols=221 Identities=22% Similarity=0.304 Sum_probs=170.9
Q ss_pred cccccccccCcCcccccCCCcc--cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCc
Q 022074 18 LANVTEIHDGLDFSAADDGGYS--FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 95 (303)
+++||+++.-.++. .-.. .+|.++.-+|+|.+++.|+-.|.+++|.+.+|.+...+.+|-..|+|+.|+ +++.
T Consensus 62 ~l~vw~i~k~~~~~----q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs 136 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV----QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGS 136 (476)
T ss_pred cccccccCchhhhh----hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCc
Confidence 67999996555442 1122 359999999999999999899999999999999988889999999999996 5689
Q ss_pred EEEEecCCCeEEEEcCcc-----ccCCCccceeecccccCeEEEEeCC--CCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 96 LIYSGSDDNLCKVWDRRC-----LNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
+|+||++||.|.+|.+.. ......+...+..|.-+|+.+.+.. ...+++|+|.|+++|+||+.......+..+
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f 216 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF 216 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence 999999999999997631 1123457788999999999887654 346899999999999999976432211111
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC------
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG------ 242 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~------ 242 (303)
|.. +. +....|..+.+..|+++|.|.+.++.+-
T Consensus 217 --------------p~s-----------------------i~----av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 217 --------------PSS-----------------------IK----AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred --------------CCc-----------------------ce----eEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence 000 00 0113455778889999999999886432
Q ss_pred ----------eEEEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 243 ----------EQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 243 ----------~~~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.....+.+|++ +|++++.|-||.+|++|+.||++.+||+.+.
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 23456678988 9999999999999999999999999998654
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=6.3e-23 Score=167.19 Aligned_cols=211 Identities=21% Similarity=0.202 Sum_probs=152.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
+-..||+.|+..|.|+.+|..|.+++.|.++.||-..+|...-++.+|.+.|.++... .+.+.++||+.|.+++|||..
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcC
Confidence 4558999999999999999999999999999999888888888999999999999984 457789999999999999975
Q ss_pred cccCC-------------------------------------------------CccceeecccccCeEEEEeCCCCCEE
Q 022074 113 CLNVK-------------------------------------------------GKPAGVLMGHLEGITFIDSRGDGRYL 143 (303)
Q Consensus 113 ~~~~~-------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l 143 (303)
.+.+. ..|...+..+...++..-|.+.+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 32110 01112223344566677788889999
Q ss_pred EEEeCCCcEEEEEcccccCC-cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC
Q 022074 144 ISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
++|..||.|..||.+..... .+... +.-.+. ...++++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~----h~~~In------------------------------------d~q~s~d~ 202 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEE----HSSKIN------------------------------------DLQFSRDR 202 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhh----hccccc------------------------------------cccccCCc
Confidence 99999999999998863211 11000 000001 11233444
Q ss_pred eEEEEEeCCCeEEEEECCCC-------------------------------------------------------eEEEE
Q 022074 223 KYIYTGSHDSCVYVYDLVSG-------------------------------------------------------EQVAA 247 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~-------------------------------------------------------~~~~~ 247 (303)
.+++|++.|.+.++||..+. +++..
T Consensus 203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 44444444444444443321 24455
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|-+||++++|||+|+-.+||++||.+++--+..+
T Consensus 283 vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 6779999999999999999999999999999887654
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-23 Score=173.87 Aligned_cols=234 Identities=24% Similarity=0.413 Sum_probs=190.9
Q ss_pred EccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEE------CCCCc----------
Q 022074 9 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD------LEANK---------- 72 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd------~~~~~---------- 72 (303)
++|.||-|+.+-+|-+-.|.=.- .+.||.+.|.+|.|++.+..++++|.|++..||. ++...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~--~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLA--TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ceeecccccceeEEeecccccee--eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 68999999999999997777553 6799999999999999999999999999999996 22100
Q ss_pred ------------------------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 73 ------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 73 ------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
....+.+|...|.+..|. ..++.++++++|.+..+||.+ ++.+...+.||.
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd 314 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHD 314 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcc
Confidence 124567788888888885 468899999999999999986 566778899999
Q ss_pred cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceee
Q 022074 129 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 208 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (303)
...+.++.+|..++.+|++.|.+.|+||.|.. -..+..|+||....+
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------------------------------I~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------------------------------IQSVAVFQGHTDTVT 361 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhh---------------------------------cceeeeeccccccee
Confidence 99999989999999999999999999998731 113556777764433
Q ss_pred eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 209 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 209 ~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
. .+|..+. .+++|+.|.+|++||++++. .+.++. ...+++.++.+..++.+|---+++.+++||+.+.+-+
T Consensus 362 S------~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 362 S------VVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred E------EEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 2 2355544 48999999999999998764 577775 4578999999999999999999999999999887654
Q ss_pred CCC
Q 022074 288 APP 290 (303)
Q Consensus 288 ~~~ 290 (303)
+-|
T Consensus 434 RlP 436 (481)
T KOG0300|consen 434 RLP 436 (481)
T ss_pred cCC
Confidence 333
No 75
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-23 Score=193.59 Aligned_cols=198 Identities=24% Similarity=0.393 Sum_probs=169.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.+|..++|+|...+++++--.|.|++||-+.+.+..++..|+++|..++|+|. ..+|+||+.|-.|++|+.+ +.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecc----cce
Confidence 46899999999999999999999999999999999999999999999999765 5699999999999999975 334
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
..-++.||.+-|..+.|++.-..|+|+|.|.+||||+... ..+++.
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs----------------------------------r~~iav 130 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS----------------------------------RKCIAV 130 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC----------------------------------CceEEE
Confidence 4557889999999999999999999999999999999753 235778
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC--------C-------------------e--EEEEeec
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--------G-------------------E--QVAALKY 250 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~--------~-------------------~--~~~~~~~ 250 (303)
++||.....+ ..|+|...++++||-|.+||+||+.- + . .-..+++
T Consensus 131 ltGHnHYVMc------AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 131 LTGHNHYVMC------AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred EecCceEEEe------eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 8888754433 34667778999999999999999742 1 0 1134679
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|...|+-++|+|+-++++||++|+.+++|...
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEec
Confidence 99999999999999999999999999999864
No 76
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=5.8e-23 Score=185.98 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=171.9
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
.|.||.-|.|+..-. .++ .....||+..|.|++..-++. +++||+|.|+++|.. ++....+.+|...|.+++.-|
T Consensus 76 ~g~~D~~i~v~~~~~-~~P-~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQ-AEP-LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred eecccceEEEEecCC-CCc-hhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC
Confidence 478898898887722 222 234479999999999887776 999999999999955 666667899999999998866
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
++ .++||+.|.+|++|.. ++...+|.||.+.|..+++-+++ .|++++.||.||+|++..
T Consensus 151 e~--~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------------ 209 (745)
T KOG0301|consen 151 EN--TYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------------ 209 (745)
T ss_pred CC--cEEeccCcceeeeccC------CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------------
Confidence 53 7889999999999973 35677899999999999987765 599999999999999842
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 251 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h 251 (303)
..+..+.||....+.+. ...+++.++++|+|++++||+.. +++..+...
T Consensus 210 -----------------------e~l~~~~ghtn~vYsis------~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP 258 (745)
T KOG0301|consen 210 -----------------------EVLLEMHGHTNFVYSIS------MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP 258 (745)
T ss_pred -----------------------ceeeeeeccceEEEEEE------ecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence 12445555654443332 23457889999999999999976 667777766
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
...||++.+-++|. +++|+.||.+++|.....|.+
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 67899999999888 566777999999998755444
No 77
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=7.7e-23 Score=183.31 Aligned_cols=205 Identities=21% Similarity=0.332 Sum_probs=175.5
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|+-.|.++.|+|...+++++-.+|.|.||+-++...+..+...+-+|.+..|-. -.+++++|+.|..||+|+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnyn---- 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYN---- 85 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecc----
Confidence 3677899999999999999999999999999999998888887788899888854 35799999999999999974
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+...+..|..|.+-+.+++.+|..++++|+|.|.+|++||-... | .+
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------------w-------------------a~ 132 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------------W-------------------AC 132 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--------------e-------------------ee
Confidence 45567789999999999999999999999999999999997531 1 13
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC--CeEEEEeCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ--PMLVSSSWDG 274 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~--~~las~s~Dg 274 (303)
..++.||.. .++...+.| .|...+|+++-|++|++|.+.+..+..++++|+..|+++.|-+.| ++|+||++|.
T Consensus 133 ~qtfeGH~H--yVMqv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 133 EQTFEGHEH--YVMQVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred eeEEcCcce--EEEEEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 456777763 345555555 366789999999999999999988899999999999999998754 7999999999
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++||.+..
T Consensus 208 tiKvWDyQtk 217 (794)
T KOG0276|consen 208 TIKVWDYQTK 217 (794)
T ss_pred eEEEeecchH
Confidence 9999998753
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=9e-23 Score=192.93 Aligned_cols=268 Identities=22% Similarity=0.347 Sum_probs=187.7
Q ss_pred ccCch--hhccccccccccCcCc-ccccC---------CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-------
Q 022074 10 VGSGT--MESLANVTEIHDGLDF-SAADD---------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------- 70 (303)
Q Consensus 10 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~------- 70 (303)
+++|. +|.-+-||.+-.=++. ...++ --|.+.|.|+.|++||++||+||.|+.|.||+...
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF 107 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence 34555 7766666655332211 12222 27889999999999999999999999999998873
Q ss_pred ---C--------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC
Q 022074 71 ---N--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139 (303)
Q Consensus 71 ---~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 139 (303)
| +....+.+|+..|..++|+| ++.+|++++.|.+|.+|+.+.+ +...++.+|...|..+.|.|-
T Consensus 108 gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred cccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc----eeeeeeecccccccceEECCc
Confidence 0 13356789999999999986 6889999999999999997633 557788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccccCCcccccCcccee--eeceeeeCCCCCccccCCCC----------------CcceEEe
Q 022074 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE--WDYRWMDYPPQARDLKHPCD----------------QSVATYK 201 (303)
Q Consensus 140 ~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 201 (303)
|+||+|-+.|++|++|++......-..+..|.... --...+.++|+++.+..+.. ..-..+-
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv 262 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV 262 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence 99999999999999999654211111111111000 01223556777776654321 0112344
Q ss_pred cccceeeeEEEeeeee-ee--------CCC----eEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeE
Q 022074 202 GHSVLRTLIRCHFSPV-YS--------TGQ----KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~~-~s--------~~~----~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~l 267 (303)
||....++++ |+|. |. ... ..+|+|+.|++|.||.....+++... +--...|.+++|||||..|
T Consensus 263 GH~~p~evvr--FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 263 GHSAPVEVVR--FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred cCCCceEEEE--eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeE
Confidence 5654444443 3332 11 111 26889999999999998776765432 2234689999999999999
Q ss_pred EEEeCCCCEEEeecCCC
Q 022074 268 VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~ 284 (303)
..+|.||++.+..+...
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998643
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.1e-22 Score=159.15 Aligned_cols=211 Identities=22% Similarity=0.374 Sum_probs=158.9
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----eEEEEecccCCeEEEEEccC--C-CcEEEEec-CCCeEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDE--S-GHLIYSGS-DDNLCK 107 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~~~v~~l~~~~~--~-~~~l~s~s-~dg~v~ 107 (303)
-|+..|+|.+|+|+|+.+++||+|.+|++...+... ...++.-|++-|..++|..+ . +..|++++ .|..|+
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 688999999999999999999999999998665432 12456678999999999532 2 44566654 344555
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+-| + ..+.....+.||.+.+.++ ++.++-.+++|+.|++||+||+|...........+
T Consensus 167 ~td--c--~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~----------------- 224 (350)
T KOG0641|consen 167 ITD--C--GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF----------------- 224 (350)
T ss_pred Eee--c--CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc-----------------
Confidence 444 3 3566778899999999887 45567799999999999999998643221111000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
.+.......+ ......|.|++|++|-+|..+.+||++-+.++..+-.|...|.++.|||..-+|
T Consensus 225 -------------~~~glessav---aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 225 -------------HDGGLESSAV---AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred -------------cCCCccccee---EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE
Confidence 0000000000 112245789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
.|++.|..|++=|+++..
T Consensus 289 lt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 289 LTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEecccceEEEeecccch
Confidence 999999999999998763
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=3.3e-23 Score=182.04 Aligned_cols=207 Identities=26% Similarity=0.473 Sum_probs=159.4
Q ss_pred CcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEeccc------CCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 37 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHT------SDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
||...+.|.+|+|+.+ .+++++.||++||||+...+...++..|. -.+..++|++ +++++++|..||+|.+|
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeee
Confidence 9999999999999654 79999999999999998876554444432 2577889975 58899999999999999
Q ss_pred cCccccCCCccceeeccccc--CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 110 DRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+.+.... ......-..|.. .++++.|+++|++|++=|.|.++++||||..+.......++..
T Consensus 345 ~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--------------- 408 (641)
T KOG0772|consen 345 DKGSRTV-RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--------------- 408 (641)
T ss_pred ecCCccc-ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc---------------
Confidence 9753321 112333456877 7999999999999999999999999999975432211111000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
.+. .-.| .|||+.++++||.. .|.+.+||..+.+.++.+......|-.+.||
T Consensus 409 -----------~~~-------~tdc----~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 409 -----------PFP-------GTDC----CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred -----------cCC-------CCcc----ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 000 0012 27788999999763 6789999999999998888788899999999
Q ss_pred CCCCeEEEEeCCCCEEEeecC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~ 282 (303)
|.-++|..++.||+++++--+
T Consensus 467 pkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred chhhheeeecCCCceEEEECc
Confidence 999999999999999987643
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=7.8e-23 Score=176.34 Aligned_cols=200 Identities=23% Similarity=0.332 Sum_probs=166.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
++.++...+....+++|+.|.++.++|-..++....+.+|...|+.+.+++ +...+++++.|-.+++|.... ...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~----~s~ 295 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPL----SSE 295 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeecccc----ccC
Confidence 389999998878999999999999999999999989999999999999975 456788999999999998631 122
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
......|.++|+.+..++.|.||++++.|++.-+.|++......... -
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--------------------------------~ 343 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--------------------------------D 343 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe--------------------------------e
Confidence 33455699999999999999999999999999999987533211000 0
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+.. ....+..|+|||-+|++|..|+.++|||++++..+..|.+|+++|..++|+.+|=+||++++|+.+++||
T Consensus 344 ~~s~------v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 344 ETSD------VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred cccc------ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 0000 0122456899999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCC
Q 022074 281 FPG 283 (303)
Q Consensus 281 ~~~ 283 (303)
+..
T Consensus 418 LRK 420 (506)
T KOG0289|consen 418 LRK 420 (506)
T ss_pred ehh
Confidence 864
No 82
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.1e-22 Score=163.61 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=163.8
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEc-cCCCcEEEEecCCCeE
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG-DESGHLIYSGSDDNLC 106 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~-~~~~~~l~s~s~dg~v 106 (303)
++.++||..=|.+++|..-|+++++|+.|++|.|||.+.+. ....+..|.+.|..+.|. |+.|+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 44568999999999999999999999999999999964432 234578899999999994 5569999999999999
Q ss_pred EEEcCc--cccC---CCccceeecccccCeEEEEeCC--CCCEEEEEeCCCcEEEEEcccccC----------------C
Q 022074 107 KVWDRR--CLNV---KGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSS----------------N 163 (303)
Q Consensus 107 ~lWd~~--~~~~---~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~D~~v~lWdl~~~~~----------------~ 163 (303)
++|.=. ..+. .....+.+......|+.+.|.| -|-.|++++.||.+|||+.-.... .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999731 1111 1112334556677899998887 477899999999999997532110 0
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCC------c--ceEE-------------ecccceeeeEEEeeeeeeeCCC
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ------S--VATY-------------KGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~-------------~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
..+...-.++.|.... ...+.+...++. . +..+ .++... +....|.|..-...
T Consensus 166 ~~~~~~~~CvsWn~sr----~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSR----MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISWAPNIGRSY 239 (361)
T ss_pred ccccCcceEEeecccc----ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeeeccccCCce
Confidence 0011111122332110 111111111111 1 1111 112111 11233444433445
Q ss_pred eEEEEEeCCCeEEEEECCCC--------------------eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 223 KYIYTGSHDSCVYVYDLVSG--------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~--------------------~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.+||+|+.|| |+||.++.. +++..+..|+++|+.+.|+-.|.+|+|.|.||.+++|..
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 7899999999 999998731 345667899999999999999999999999999999973
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3.1e-22 Score=162.70 Aligned_cols=221 Identities=20% Similarity=0.381 Sum_probs=169.6
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
.-+|++|....||-+-++.-.-.....||...|-.+.|+| +...+++++.|.+|++||...++...++....+. ..+.
T Consensus 35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ 113 (313)
T KOG1407|consen 35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INIT 113 (313)
T ss_pred eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEE
Confidence 4578999999999886653222445589999999999997 5668999999999999999999877665544444 3455
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccC-------------------------------------CCccceeecccccCe
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNV-------------------------------------KGKPAGVLMGHLEGI 131 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~-------------------------------------~~~~~~~~~~h~~~v 131 (303)
|+| ++++++.+++|..|...|.+.... ..+++..+..|....
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 755 477888888888888877642100 113445567799888
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
.++.|+|+|++||+|+.|..+.|||+..+.+.-. +..++|.++
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~----isRldwpVR--------------------------------- 235 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERC----ISRLDWPVR--------------------------------- 235 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhhee----eccccCceE---------------------------------
Confidence 9999999999999999999999999875432110 111122111
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
...||.+|++||+|++|..|-|=++++|+.+..+. +++|...|+|+|..++||-+++|
T Consensus 236 ---TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 236 ---TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---EEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 23488899999999999999999999999998874 88999999999999999988876
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=188.37 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=179.4
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+||.|-.+.||+..+|.--. ...||...|.++...+ ..+++||.|.+|++|+++++.....+.+|.+.|+++..+
T Consensus 266 sgS~D~t~rvWd~~sg~C~~--~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH--SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEecCCcEEeEecCCCcEEE--EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 57788889999987777332 4469999999998774 468889999999999999999888888899999999985
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
..++++|+.|++|++||.. ..+....+.||...|.++.+.+. ..+++|+.|++|++||++...
T Consensus 341 --~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---------- 403 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---------- 403 (537)
T ss_pred --CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----------
Confidence 5699999999999999986 45667889999999999977654 789999999999999997641
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec-
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY- 250 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~- 250 (303)
+++.++.+|......+ ...+++|++++.|++|++||..+++.+..+++
T Consensus 404 -----------------------~c~~tl~~h~~~v~~l--------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 404 -----------------------KCIHTLQGHTSLVSSL--------LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred -----------------------hhhhhhcCCccccccc--------ccccceeEeccccccEEEeecccCceeeeeccC
Confidence 1233444444332111 12467899999999999999999999999988
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|...|+.+++. ...+++++.||++++||++..
T Consensus 453 ~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 453 HVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred CcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 67899999987 678999999999999998765
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.8e-23 Score=175.59 Aligned_cols=233 Identities=19% Similarity=0.281 Sum_probs=163.1
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.||.-+|.|++=+|.. ..+++|+.||.|+|||+........+..|.+.|..+++.. ..+++++.|.+|+.|.....
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC
Confidence 7999999999999987 7899999999999999999888888999999999999953 57889999999999973210
Q ss_pred -----------------------cC-----------CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEccc
Q 022074 115 -----------------------NV-----------KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 115 -----------------------~~-----------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~ 159 (303)
.. ...|+..+.--.+.+.++.|+|-. ..|++++.|++|.|||+|.
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 00 011233333334667888888854 4577888999999999997
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceE------------EecccceeeeEEEeeeeeeeCCCeEEE
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVAT------------YKGHSVLRTLIRCHFSPVYSTGQKYIY 226 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~~~~la 226 (303)
..+.-+..+.-+. ..+.+.|..-.+.... +..+.. +.+|. ......+|||.|+.++
T Consensus 220 ~~Pl~KVi~~mRT-----N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv------sAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 220 ASPLKKVILTMRT-----NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV------SAVMDVDFSPTGQEFV 288 (433)
T ss_pred CCccceeeeeccc-----cceecCccccceeeccccccceehhhhhhcccchhhcccc------eeEEEeccCCCcchhc
Confidence 6543332221111 1122222222221111 112222 22222 1223456889999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 227 TGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+||.|++|+||....+...-.+ ..-...|.++.||.|.++++|||+|+++++|...
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999999999999876532221 1122469999999999999999999999999964
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1e-21 Score=162.97 Aligned_cols=229 Identities=26% Similarity=0.322 Sum_probs=160.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+..+..|.++.|+|.++.|++++|||++++||.....+. ....|..++.+++|.+ ...+++|+.||.|+++|+...
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~- 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG- 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeeeccC--CceEEEeccCceEEEEEecCC-
Confidence 444556999999999999999999999999999887543 3457889999999964 457889999999999997532
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 194 (303)
....+..|.+++.++...+....+++||.|++|++||.|..........+...+..+ .....+.. ..+
T Consensus 86 ----~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~-------v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 86 ----NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD-------VSGNRLVVGTSD 154 (323)
T ss_pred ----cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe-------ccCCEEEEeecC
Confidence 233455799999999999888899999999999999999633333222211111111 11111111 112
Q ss_pred CcceEEecc----------cceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC----eEEEEeecCC--------
Q 022074 195 QSVATYKGH----------SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT-------- 252 (303)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~----~~~~~~~~h~-------- 252 (303)
+.+..++-. .......||... -|++.=.+.++-||+|.+=..+.. ++-..|+.|.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~---~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVAL---VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEE---ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 222222111 111223333322 234444788999999999887765 3445677774
Q ss_pred -CCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 253 -SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 253 -~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
-||++++|||-...||||+.||-+.+||+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCc
Confidence 389999999999999999999999999965
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=170.99 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=159.9
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++|+.+|..+.|+|+++ .+++|+.|+.+++||+.++..+..+.+|++-|.|..++|.+++.++||+.||+||+||+|..
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 68999999999999765 57778889999999999998777889999999999999888899999999999999999843
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
. ..+ ....|..+|..+-+-|.|.+++++|. ..||+||+.....
T Consensus 187 ~---~~v-~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q-------------------------------- 229 (487)
T KOG0310|consen 187 T---SRV-VELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ-------------------------------- 229 (487)
T ss_pred C---cee-EEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce--------------------------------
Confidence 2 223 33468899999988999999999875 8999999863210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.....|.-..+++ .+..+++.|++|+-|+.+++||+.+-+.+..++ -.+||.+++.||+++.++.|..||
T Consensus 230 -ll~~~~~H~KtVTcL------~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 230 -LLTSMFNHNKTVTCL------RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred -ehhhhhcccceEEEE------EeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccc
Confidence 011111122122222 244567889999999999999998888888775 457999999999999999999999
Q ss_pred CEEEee
Q 022074 275 DVVRWE 280 (303)
Q Consensus 275 ~i~~Wd 280 (303)
.+-.=+
T Consensus 302 lv~~rr 307 (487)
T KOG0310|consen 302 LVSIRR 307 (487)
T ss_pred eeeeeh
Confidence 887654
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=162.48 Aligned_cols=226 Identities=18% Similarity=0.253 Sum_probs=160.9
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.--|+.|+.+++|.+ ...+++|+-||.|+++|+.++.. .++..|..++.|+.+... ...+++|++|++|++||.|.
T Consensus 50 ~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~- 125 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRN- 125 (323)
T ss_pred heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccc-
Confidence 358999999999996 56799999999999999999875 457789999999999754 55788999999999999873
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 193 (303)
......+. ....|.+++. .++.|+.|..|..+.+||+|.+...++. ....+.+..+.+..-|....... ..
T Consensus 126 ---~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 126 ---KVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ---cccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEee
Confidence 11122221 2346777765 4668999999999999999987654422 12233444444433332111111 00
Q ss_pred ---------------CCcceEEeccccee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 194 ---------------DQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 194 ---------------~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
......++.|.... .++-......|+|-.+.|||||.||.|-+||+.+++.++.+......|
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI 277 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI 277 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCce
Confidence 11223344443221 111122334577777889999999999999999999998887777789
Q ss_pred EEEEECCCCCeEEEEeC
Q 022074 256 RDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~ 272 (303)
.+++|+.||..||.|+.
T Consensus 278 ~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeccCCCeEEEEec
Confidence 99999999999999986
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-22 Score=161.96 Aligned_cols=236 Identities=21% Similarity=0.305 Sum_probs=171.5
Q ss_pred CchhhccccccccccCcCcc-cccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCceE--EEEecccCCeEE
Q 022074 12 SGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNT 86 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~ 86 (303)
..++|.++.|.++=.+.+.. ..+..||++||..++|.. .|.+||+++.||.|.||.-.+++.. .....|...|++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNS 107 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccccee
Confidence 45778888999986666533 445689999999999996 7999999999999999998888533 235578899999
Q ss_pred EEEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC---C-----------CEEEEEeCCCc
Q 022074 87 VCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---G-----------RYLISNGKDQA 151 (303)
Q Consensus 87 l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~s~~~D~~ 151 (303)
++|.|. .+-.|++++.||.|.+.+.+.... .........|.-+|+++++.|. | ..|++||.|..
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~-w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCC-ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 999763 366899999999999988763311 1223456679999999988775 4 56999999999
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
|+||+..... |.. -..+.+|... +-...+.|...--..++|++++|
T Consensus 187 VkiW~~~~~~-------------w~~-------------------e~~l~~H~dw--VRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 187 VKIWKFDSDS-------------WKL-------------------ERTLEGHKDW--VRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred eeeeecCCcc-------------hhh-------------------hhhhhhcchh--hhhhhhccccCCCceeeEEecCC
Confidence 9999875421 000 0012222210 11122334333335689999999
Q ss_pred CeEEEEECCCC-e--EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 232 SCVYVYDLVSG-E--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~-~--~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|++-||-.... + +...++.-..+++.+.||+.|++|+.++.|+.+.+|.-.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99999987522 1 122334455789999999999999999999999999854
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=168.10 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=174.0
Q ss_pred EEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc--CCeE
Q 022074 8 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SDVN 85 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~--~~v~ 85 (303)
++.+|+ |.-|-||-. +++........|+.+|..+..+|+|+|+++++.|++....|..++.........+ -.++
T Consensus 276 v~~aSa--d~~i~vws~--~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 276 VITASA--DEIIRVWSV--PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred eeecCC--cceEEeecc--ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 344444 445566655 2333344457999999999999999999999999999999999998665443322 2478
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+.+|+| ++..|.+|..||.|++||++..+ ....|.+|.++|..++|+.+|-+|+++..|++|++||||+++...+
T Consensus 352 s~~fHp-DgLifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 352 SAAFHP-DGLIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred EeeEcC-CceEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 889965 58899999999999999997432 4567889999999999999999999999999999999998763222
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC--CCe
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGE 243 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~--~~~ 243 (303)
..+. ....+ .+..|...|++|+.+|+|=+|++++-. +..
T Consensus 427 ~~l~-----------------------~~~~v----------------~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 427 IQLD-----------------------EKKEV----------------NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred eecc-----------------------ccccc----------------eeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 1110 00000 012355678999999999888888854 445
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++..+..|.+..+.+.|....++++++|.|..+++.-+
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 67788889999999999999999999999999888653
No 91
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=2.6e-22 Score=181.78 Aligned_cols=222 Identities=25% Similarity=0.324 Sum_probs=171.4
Q ss_pred EEEccCchhhccccccccccCcCcc-cccCCCcccceEE-EEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCC
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFS-LKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~-l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
.+-|++++-|....||+...+.-.. ..- .||..-|.. ++|-+ ++..+++|+.|.++.+|.+.+......+.+|...
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~-~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAF-EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceec-ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence 3457888889889999874433221 223 334433444 77775 5556999999999999999998888889999999
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
|+++... .++. ++|||+|.++++|... ...-.+.+|..+|+++.+-|++ .++||+.|++||+|.=.
T Consensus 104 VC~ls~~-~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----- 169 (745)
T KOG0301|consen 104 VCSLSIG-EDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----- 169 (745)
T ss_pred eeeeecC-CcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----
Confidence 9999874 3344 8899999999999753 2334588999999999988887 79999999999999632
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
..+.++.||.. ++|.. .+-+ ...+++++.||.|+.|++ +|+
T Consensus 170 -------------------------------~~l~tf~gHtD---~VRgL---~vl~-~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 170 -------------------------------TLLKTFSGHTD---CVRGL---AVLD-DSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred -------------------------------chhhhhccchh---heeee---EEec-CCCeEeecCCceEEEEec-cCc
Confidence 12344555532 22211 1112 345899999999999999 788
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+.++.+|+.-|.+++..+++..++|+++|+++++|+..
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 888999999999999988999999999999999999864
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-23 Score=185.67 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=159.8
Q ss_pred CCcccceE---EEEEc-CCCCEEEEeeCCCeEEEEECCCCce------EEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 36 GGYSFGIF---SLKFS-TDGRELVAGSSDDCIYVYDLEANKL------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 36 ~~~~~~v~---~l~~s-~~g~~l~sgs~Dg~v~lwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
..|..+|. ++..+ |++++|++||.||.|++|+...... ...+..|.+-|+.++... +++.|+|+|.|-+
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTT 96 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCce
Confidence 35555555 56666 5677899999999999998866432 345678999999998854 4778999999999
Q ss_pred EEEEcCccccCCCccceeecccccCeEEEEe-CCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
|++|+..... .....++..|.+.|.+++. .++..++||||-|+.|.+||+.........+.+..
T Consensus 97 VK~W~~~~~~--~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~------------- 161 (735)
T KOG0308|consen 97 VKVWNAHKDN--TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV------------- 161 (735)
T ss_pred EEEeecccCc--chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-------------
Confidence 9999964221 1234456679999999998 77888999999999999999975422100000000
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
....+.. |+.. ..++.+..+.+..+++||.++.+++||.++++++..+.+|+..|..+-.++||
T Consensus 162 t~~sl~s----------G~k~------siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 162 TVNSLGS----------GPKD------SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccccCCC----------CCcc------ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence 0000000 1110 11122334567889999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCEEEeecCC
Q 022074 265 PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~ 283 (303)
+.++|+|.||+|++||+..
T Consensus 226 t~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CeEeecCCCceEEeeeccc
Confidence 9999999999999999853
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=3.7e-22 Score=173.02 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=158.1
Q ss_pred cccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCce----------EEEEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 38 YSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
|...|..+.+-|+.. .+++++..+.|.|||.....- -.++.+|.+.-..++|++...-.|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 556677777777544 677788899999999865321 136889988778899987666688899999999
Q ss_pred EEEcCccccCC---CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 107 KVWDRRCLNVK---GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 107 ~lWd~~~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
++||+...... ..+...+.+|.+.|..++|++ +..+|++++.|+.+.|||+|.. .....
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~--------------- 265 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPS--------------- 265 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCc---------------
Confidence 99998754432 345667889999999999987 4567899999999999999952 11110
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~s 261 (303)
....+|.....+ +.|+| .++..|||||.|++|++||+++.+ ++..+++|+..|..|.||
T Consensus 266 ---------------~~~~ah~~~vn~--~~fnp---~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 266 ---------------HSVKAHSAEVNC--VAFNP---FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ---------------ccccccCCceeE--EEeCC---CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 011112111111 12222 246789999999999999999875 488999999999999999
Q ss_pred CCC-CeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQ-PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~-~~las~s~Dg~i~~Wd~~~~ 284 (303)
|.. ..|||++.|+.+.+||+...
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CCCCceeEecccCCcEEEEecccc
Confidence 985 58999999999999998654
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=167.97 Aligned_cols=212 Identities=23% Similarity=0.354 Sum_probs=171.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc--
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-- 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~-- 113 (303)
.||+.+|+.++-......+.++|.|.+.+||.++++....++.+|.+.|+++.|+ +.+.++++++.|++.++|....
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec-cccceEEEccCCcchHHHHHhhcC
Confidence 6999999999998877899999999999999999999999999999999999996 4688999999999999996210
Q ss_pred --cc----------------------------C----CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 114 --LN----------------------------V----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 114 --~~----------------------------~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.. . ...|...+.||...|.+.+|-..|.+++|++.|++..+||+..
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 00 0 0124456789999999999988999999999999999999875
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
... +..+.||...- ..|. -+|.++++++.+-|.+.++||.
T Consensus 304 ge~----------------------------------v~~LtGHd~EL--tHcs----tHptQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 304 GEV----------------------------------VNILTGHDSEL--THCS----THPTQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred Cce----------------------------------eccccCcchhc--cccc----cCCcceEEEEeccCceeEeccc
Confidence 332 22334443211 1111 2467899999999999999999
Q ss_pred CCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCC
Q 022074 240 VSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 289 (303)
Q Consensus 240 ~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~ 289 (303)
+.. ..+..|.+|++.|+++.|..+.+ +++|++|.++++||+..++....
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred hhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcce
Confidence 743 34788999999999999988765 78999999999999998866543
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.4e-23 Score=189.22 Aligned_cols=202 Identities=28% Similarity=0.480 Sum_probs=173.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
..|...|.++..-..++.+++|++|..+.||....-.....+.+|..+|.++.|+.+ ..++++|+.+|+|++||+.
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDle--- 100 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLE--- 100 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-hhhhcccccCCceeeeehh---
Confidence 688899999888778889999999999999988665555668899999999999654 5688899999999999986
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
..+..+.+.||...+..++|+|-+.++++|+.|.-+++||.|+.-
T Consensus 101 -eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---------------------------------- 145 (825)
T KOG0267|consen 101 -EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---------------------------------- 145 (825)
T ss_pred -hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC----------------------------------
Confidence 455677899999999999999999999999999999999998532
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
+...+++|.....+ ..|+|+|++++.|++|..++|||...|+.+.+|+.|++++.++.|+|..-++++||.|++
T Consensus 146 c~~~~~s~~~vv~~------l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDV------LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred ceeeecCCcceeEE------EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 23334443322222 237899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecC
Q 022074 276 VVRWEFP 282 (303)
Q Consensus 276 i~~Wd~~ 282 (303)
+++||+.
T Consensus 220 v~f~dle 226 (825)
T KOG0267|consen 220 VRFWDLE 226 (825)
T ss_pred eeeeccc
Confidence 9999986
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=169.22 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=162.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE--------EEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
|-..-+-|..|||||+++++||.||.|.+|+..+|++. ..+.-+++.|.|+.|+. +..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 55567889999999999999999999999999998754 23556788999999975 5789999999999999
Q ss_pred EcCccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 109 WDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
|.++ ++...+.|. .|..+|+++.|+.|+..+++++.|.++|+--+...+
T Consensus 290 Wri~----tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-------------------------- 339 (508)
T KOG0275|consen 290 WRIE----TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-------------------------- 339 (508)
T ss_pred EEEe----cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------------------------
Confidence 9976 344455565 699999999999999999999999999999876432
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQP 265 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~ 265 (303)
++..+.||..... ...|+++|..+++++.||+|++|+.++.+++.+++ +...+|+++..-|..+
T Consensus 340 --------~LKEfrGHsSyvn------~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 340 --------CLKEFRGHSSYVN------EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred --------hHHHhcCcccccc------ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 2334445542221 23477899999999999999999999999988886 3456899999888664
Q ss_pred -eEEEEeCCCCEEEeecCC
Q 022074 266 -MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 266 -~las~s~Dg~i~~Wd~~~ 283 (303)
.++.+...+++.+-++++
T Consensus 406 eh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ceEEEEcCCCeEEEEeccc
Confidence 677777778888877653
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=1.2e-21 Score=178.80 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=160.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-----CceEE-------EEecccCCeEEEEEccCCCcEEEEecCC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-----~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
.+|+.+|.+++.+||++.+++||.|.+|++||..- +.... +...-...|.|+.++| ++++|+.+-.|
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLd 529 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLD 529 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEecc
Confidence 38999999999999999999999999999997642 21111 1222346799999975 58899999999
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
.+|++|=+... +..-.+.||.=+|.++++++|+.+++|||.|+.|++|-+.-..+. .
T Consensus 530 nTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----K--------------- 586 (888)
T KOG0306|consen 530 NTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----K--------------- 586 (888)
T ss_pred CeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----h---------------
Confidence 99999976532 334467799999999999999999999999999999977532211 1
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
++-+|+.. ++ +..|-|...++.++|.|+.|+-||-+..+++..+.+|...|++++.+|+
T Consensus 587 ---------------S~fAHdDS--vm----~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 587 ---------------SFFAHDDS--VM----SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred ---------------hhhcccCc--ee----EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 11111111 11 1224566788999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCEEEeec
Q 022074 264 QPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~ 281 (303)
|.+++|+|.|.+|++|.-
T Consensus 646 G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWER 663 (888)
T ss_pred CCeEEeccCCceeEeeec
Confidence 999999999999999984
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=172.22 Aligned_cols=219 Identities=18% Similarity=0.283 Sum_probs=157.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----EEec-ccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~----~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
-..+|+..|.++++.|.|-++++||.|-+|++||...-.... ++.. ....|+.+.|++ .++.|++.+...+.+|
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKL 240 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeE
Confidence 336899999999999999999999999999999997543221 1222 234689999965 5778888888889999
Q ss_pred EcCccccCCC-----cc---ceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeecee
Q 022074 109 WDRRCLNVKG-----KP---AGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 179 (303)
Q Consensus 109 Wd~~~~~~~~-----~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (303)
+|........ +. .....||...+++..|+|.. +.|+|++.|+++|+||+...+.....
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV------------- 307 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV------------- 307 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-------------
Confidence 9964321100 01 11235899999999999864 56999999999999998754321110
Q ss_pred eeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---EEEEeecCCC--C
Q 022074 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAALKYHTS--P 254 (303)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~h~~--~ 254 (303)
+++...+ +.. .....|. |+++++++|+|..||.|.+||..+.. ..+.-++|.. .
T Consensus 308 ---------ik~k~~~------g~R--v~~tsC~----~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 308 ---------IKTKPAG------GKR--VPVTSCA----WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred ---------EeeccCC------Ccc--cCceeee----cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 0000000 000 0111232 66789999999999999999975442 1334467876 8
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
|++++||+||++|+|-|.|+++++||+....+.
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 999999999999999999999999999865433
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=176.49 Aligned_cols=232 Identities=19% Similarity=0.287 Sum_probs=181.5
Q ss_pred chhhccccccccccCcCc-cccc---CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEE
Q 022074 13 GTMESLANVTEIHDGLDF-SAAD---DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNT 86 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~ 86 (303)
|.-|..|-+|.+-.-.++ +++. -..|+..|..+....+|+.++++|.|-+|++|+...+. ....+..|++-|.|
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkc 122 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKC 122 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhee
Confidence 445666666666333322 2111 14799999999999999999999999999999998774 23456789999999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCcccc------CCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~------~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+++--++..+++||+.|+.|.+||+.... .+..+...+. |+.++|.+++-++.|..|++||.++.+|+||.|.
T Consensus 123 la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 123 LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99833567799999999999999986331 1112222333 8999999999999999999999999999999874
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+ .+..+.||......+ ..+.||..+++|++||+|++||+
T Consensus 203 ~~----------------------------------kimkLrGHTdNVr~l------l~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 203 CK----------------------------------KIMKLRGHTDNVRVL------LVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cc----------------------------------ceeeeeccccceEEE------EEcCCCCeEeecCCCceEEeeec
Confidence 22 233444554322222 24678999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 240 ~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....++.++..|+..||++.-+|+-..+.+|+.||.|..=|+...
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999999999999999888754
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.1e-21 Score=172.00 Aligned_cols=232 Identities=21% Similarity=0.324 Sum_probs=171.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.--|.++.+.|||+.|++|+.-.++.|||+..-.... ++......+.+++.++ +.++++++..||.|++||+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh---- 539 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH---- 539 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc----
Confidence 3458899999999999999999999999998765332 2222234566777765 57899999999999999986
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+...++.|+||.+++.|++++++|..|-|||-|.+||.||+|........ .|.+ ++..+.+.|+...+...+...
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~S---QIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSS---QIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhh---hheecccCCCccceeeecccC
Confidence 34567889999999999999999999999999999999999975443222 1111 112233445555444443322
Q ss_pred -ceEEecccceee----eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 197 -VATYKGHSVLRT----LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 197 -~~~~~~~~~~~~----~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
+..+.-....++ ...|..+..|++-|+++++-|.|.-+-.|..--|..+...+ -..+|.+|+.|.|.++++|||
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecC
Confidence 111110000011 12355677788899999999999999999988888777665 346899999999999999999
Q ss_pred CCCCEEEeec
Q 022074 272 WDGDVVRWEF 281 (303)
Q Consensus 272 ~Dg~i~~Wd~ 281 (303)
.|....++.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9999988875
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6.5e-21 Score=162.05 Aligned_cols=209 Identities=21% Similarity=0.366 Sum_probs=153.7
Q ss_pred CcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCC----------------ceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEAN----------------KLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~----------------~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+|...+.-+.-++-|+ ..++=+..|.|.||++... +.+.++.+|.+.-..++|+|-..-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 7777888877776554 4555567899999998642 123456788888899999875555788
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
||..-+.|++|......-. .-...+.+|..+|-.+.++| ....|+|||.|++|||||+|......
T Consensus 229 sGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------- 294 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------- 294 (440)
T ss_pred cCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-------------
Confidence 9999999999976432110 11235778999999999988 45789999999999999998642111
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC---CeEEEEeecCCCC
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---GEQVAALKYHTSP 254 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~---~~~~~~~~~h~~~ 254 (303)
++. .+.|.....++ .++....+||+|+.||+++|||+++ ++.+..|+.|..|
T Consensus 295 ------------------~~~-~kAh~sDVNVI------SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------AVS-TKAHNSDVNVI------SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------eeE-eeccCCceeeE------EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 011 12222222222 1333445899999999999999975 4578899999999
Q ss_pred eEEEEECCCC-CeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+++.|+|.. ..|+++|+|..|.+||+...
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999975 57899999999999998654
No 102
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=5.3e-21 Score=171.93 Aligned_cols=246 Identities=25% Similarity=0.321 Sum_probs=167.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
....|.-+|+.+.|-|....|++++.|.++++||+++.++... ..+|..-|..+||.+.+...|++|+.||.+.|||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 4468999999999999777899999999999999999887655 78999999999999888899999999999999998
Q ss_pred ccccCC--------------C--ccc-------eeecccccCeEE---EEeCCCCCEEEEEeC-CCcEEEEEcccccCCc
Q 022074 112 RCLNVK--------------G--KPA-------GVLMGHLEGITF---IDSRGDGRYLISNGK-DQAIKLWDIRKMSSNA 164 (303)
Q Consensus 112 ~~~~~~--------------~--~~~-------~~~~~h~~~v~~---~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~ 164 (303)
++.... . .+. .....|...+.. +.+..|...|+++|. |+.|++||+|+.....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 753210 0 000 011123333333 335567788998887 9999999999753321
Q ss_pred ccc----cCccce---eeeceeeeCCCCCccc-cCCCCCcceEEe-------------cccceeeeEEEeeeeeeeCCCe
Q 022074 165 SCN----LGFRSY---EWDYRWMDYPPQARDL-KHPCDQSVATYK-------------GHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 165 ~~~----~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
... ..+... ...+..+.....+..+ +.+.+..|..++ |+.......+ -..++++.
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk----s~lSpd~~ 330 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK----SELSPDDC 330 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee----eecCCCCc
Confidence 110 000000 0011111111112222 222233343332 2221111111 12468999
Q ss_pred EEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
++++|+.|...++|.+.+-+. ...+.+|...|++++|.|..- -++|+++|..+++|++..
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 999999999999999988765 566789999999999998653 477779999999999843
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.1e-22 Score=183.12 Aligned_cols=195 Identities=30% Similarity=0.414 Sum_probs=161.9
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||+.+|.++.|++....|++|+.+|+|++||+..++....+.+|...+..+.|+| .+.++++|+.|+.+++||.+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~R-- 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIR-- 142 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhh--
Confidence 389999999999999999999999999999999999998889999999999999964 68899999999999999987
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.......+.+|...|..+.++|+|.++++++.|.++++||++..+.... |...+
T Consensus 143 --k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e----f~~~e-------------------- 196 (825)
T KOG0267|consen 143 --KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE----FKSHE-------------------- 196 (825)
T ss_pred --ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc----ccccc--------------------
Confidence 2334667888999999999999999999999999999999975432111 10000
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+. .+.|+|..-++++||.|+++++||+++.+.+...+.-...|.+.+|+|++..+++|..+.
T Consensus 197 ~~v~----------------sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 197 GKVQ----------------SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccc----------------ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 0111 122445567899999999999999999998888777778999999999999999887653
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.7e-21 Score=178.36 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=166.9
Q ss_pred cccccccccc-CcCcccccCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 17 SLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
..|+||++=. +.+.+-.+.+-|+..+.+++|++. ..+|++||+||+|++||++..+-...+.+....|..|.|+|..+
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 3457888722 112222355789999999999975 55899999999999999998876667777778899999998888
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
+.|+++..+|.+.+||+| +..+....+..|.+.|.++.++|++.+|||||+|+.|+|||+.........
T Consensus 190 ~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-------- 258 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-------- 258 (839)
T ss_pred ceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--------
Confidence 999999999999999998 344555567889999999999999999999999999999998642211100
Q ss_pred eeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe--CCCeEEEEECCCCe-EEEEeecC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGE-QVAALKYH 251 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~--~dg~i~iwd~~~~~-~~~~~~~h 251 (303)
.+. +. ..+-+..|.|..+ .+||+++ .|..|+|||++-.- +..++..|
T Consensus 259 ---------------------tIn--Ti----apv~rVkWRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 259 ---------------------TIN--TI----APVGRVKWRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred ---------------------EEe--ec----ceeeeeeeccCcc---chhhhhhccccceEEEEeeccccccceeeecc
Confidence 000 00 1122334445432 4577775 58899999996432 36678899
Q ss_pred CCCeEEEEECCCC-CeEEEEeCCCCEEEe
Q 022074 252 TSPVRDCSWHPSQ-PMLVSSSWDGDVVRW 279 (303)
Q Consensus 252 ~~~I~~v~~sp~~-~~las~s~Dg~i~~W 279 (303)
..-++.++|-... -.|.+++-|+++..-
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHh
Confidence 9999999997643 478899999887644
No 105
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=161.41 Aligned_cols=202 Identities=14% Similarity=0.247 Sum_probs=160.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..|+-.|.-+.||++|++||++|.|.+..+|++..... ..++.+|..+|..+.|+|+ +++|++|+.|..+++||..
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCC
Confidence 58999999999999999999999999999998876554 5678899999999999875 6788889988899999986
Q ss_pred cccCCCccceee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.+. ....+ .+|..++.+++|.|||..+++|+.|+++..||+..-.
T Consensus 300 tgd----~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------------------------------ 345 (519)
T KOG0293|consen 300 TGD----LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------------------------------ 345 (519)
T ss_pred cch----hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------------------------------
Confidence 332 12122 2356789999999999999999999999999986311
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
...+.|... .+....+.++||+++++.+.|..|++++.++....+... -+.+|++...|.|++++...=
T Consensus 346 -----~~~W~gvr~-----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 346 -----LGNWEGVRD-----PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred -----hhccccccc-----ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc
Confidence 111111110 111223456899999999999999999998876665444 345899999999999999999
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.+.++++||++.
T Consensus 415 ~~qei~LWDl~e 426 (519)
T KOG0293|consen 415 QDQEIHLWDLEE 426 (519)
T ss_pred ccCeeEEeecch
Confidence 999999999873
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=155.61 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=149.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE----EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
-||...|.+++|+.||++|++++.|++||||+++.-... .+..-.-+.-+.+.|.|++...+++.....++++|..
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 499999999999999999999999999999999774321 0111111346788999888888888888889999965
Q ss_pred ccccCCCc------cce---eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 112 RCLNVKGK------PAG---VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 112 ~~~~~~~~------~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
.-.+ .+. +.. ...-|.-.+-.+-+...+.+|++++.|..|.||+++... ..+.
T Consensus 163 ~K~~-dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~-L~~i---------------- 224 (420)
T KOG2096|consen 163 VKKT-DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL-LQSI---------------- 224 (420)
T ss_pred eecc-cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce-eeee----------------
Confidence 2110 110 111 111244445556667788999999999999999997321 1100
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC---CC-----eEEEEeecCCCC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV---SG-----EQVAALKYHTSP 254 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~---~~-----~~~~~~~~h~~~ 254 (303)
.+ .+. .......||+|+++++++-.-.+++|.+- .| +.+..+++|+..
T Consensus 225 ---------------dt---nq~------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 225 ---------------DT---NQS------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred ---------------cc---ccc------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 00 000 00112368999999999999999999863 33 245678999999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|..++||++.+.++|+|-||+.++||..--
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 999999999999999999999999997644
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=4.7e-20 Score=168.58 Aligned_cols=214 Identities=21% Similarity=0.249 Sum_probs=162.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
++-+||+.-|.++++|.+...+++|+. +.+++|+.++.+...++.. +-+-+..|.| .++++++|..+|.+-+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEee
Confidence 455899999999999988877777654 4699999999887665543 2566777864 57899999999999999986
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
+. ........|.++++.++..||+..++|||.|++|++||......... +
T Consensus 443 S~----~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g--------------------t------ 492 (888)
T KOG0306|consen 443 SA----SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG--------------------T------ 492 (888)
T ss_pred hh----hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc--------------------c------
Confidence 32 22334557999999999999999999999999999999764321000 0
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
..++..+..... ..+..-..+..+|||+++||.+--|.+++||-+++.+..-.+=+|.-||.++..|||.++++|||.
T Consensus 493 -~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 493 -QKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred -cceeeeeccceE-EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 000001100000 001111123457899999999999999999999999887777799999999999999999999999
Q ss_pred CCCEEEeecC
Q 022074 273 DGDVVRWEFP 282 (303)
Q Consensus 273 Dg~i~~Wd~~ 282 (303)
|.++++|-++
T Consensus 571 DKnVKiWGLd 580 (888)
T KOG0306|consen 571 DKNVKIWGLD 580 (888)
T ss_pred CCceEEeccc
Confidence 9999999764
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-21 Score=177.51 Aligned_cols=208 Identities=21% Similarity=0.346 Sum_probs=155.5
Q ss_pred eEEEEEc-CCCCEEEEeeCCCeEEEEECCC---CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFS-TDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s-~~g~~l~sgs~Dg~v~lwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
...+.|+ -+.+.|++++..|.|.+||+.. .++...+..|...++++.|++-.+++|+|||.||+|++||+|..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 3446666 3577899999999999999977 34444567899999999998878899999999999999999832
Q ss_pred CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
....++.+..++|..+.|+| .+.+|+++...|.+++||+|.... +
T Consensus 167 -~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------------------------------~ 212 (839)
T KOG0269|consen 167 -KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------------------------------C 212 (839)
T ss_pred -cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------------------------------H
Confidence 33445667888999999987 477899999999999999996432 1
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCC-eEEEEeC-
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSW- 272 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~-~las~s~- 272 (303)
...+..|.... ++..++|++.+|||||-|+.|+|||..+.+. +.++ ....||..|+|=|..+ .|||++.
T Consensus 213 ~~k~~AH~GpV------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 213 EKKLTAHNGPV------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred HHHhhcccCce------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhcc
Confidence 11122222111 1223678899999999999999999986543 3333 2457999999999877 4777664
Q ss_pred -CCCEEEeecCCCCccCCCCcc
Q 022074 273 -DGDVVRWEFPGNGEAAPPLNK 293 (303)
Q Consensus 273 -Dg~i~~Wd~~~~~~~~~~~~~ 293 (303)
|-.|++||+.-++-.-.-+.+
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ccceEEEEeeccccccceeeec
Confidence 889999998765444333333
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=159.63 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=157.1
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceE---EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+||...=++|+|||- -..+++|..-+.|++|...++... ..+.+|+..|..++|+|....+|+|||-||+|+|||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 599999999999983 225888888889999999887643 3467899999999999888889999999999999999
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
|... .++.-....|...|+.++|+..-.+|++|+.||+++|||||..+.
T Consensus 288 Rs~~--~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~----------------------------- 336 (440)
T KOG0302|consen 288 RSGP--KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS----------------------------- 336 (440)
T ss_pred cCCC--ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC-----------------------------
Confidence 8542 223334467989999999999888999999999999999996432
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-------E-EE--------EeecC--CC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-------Q-VA--------ALKYH--TS 253 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-------~-~~--------~~~~h--~~ 253 (303)
.+.++.++-|...++.+.++. .+...|+++|+|..|.+||+.... . .. -+-.| +.
T Consensus 337 --~~pVA~fk~Hk~pItsieW~p-----~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk 409 (440)
T KOG0302|consen 337 --GQPVATFKYHKAPITSIEWHP-----HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK 409 (440)
T ss_pred --CCcceeEEeccCCeeEEEecc-----ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh
Confidence 235667777766666555432 245678999999999999985321 0 00 11234 35
Q ss_pred CeEEEEECCCCC-eEEEEeCCCCEEE
Q 022074 254 PVRDCSWHPSQP-MLVSSSWDGDVVR 278 (303)
Q Consensus 254 ~I~~v~~sp~~~-~las~s~Dg~i~~ 278 (303)
.+..+.|+++-+ +|+|.+.||--.+
T Consensus 410 e~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 410 EVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred HhhhheeccCCCCeEEEecccceeEE
Confidence 799999999976 8888888875443
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.8e-20 Score=155.94 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=148.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
+-|.-.|.++.|+|...+|++|+.|++|++||...... ..+......+|.++.|+| .++.++.|..-.++++||+..
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccc
Confidence 46788999999999999999999999999999865322 223344556899999964 689999999999999999753
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
...-. ..-.-.+|.++|+++..++.+++.+|++.||.|+|||=-.-++..+....
T Consensus 248 ~Qcfv-sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A------------------------ 302 (430)
T KOG0640|consen 248 YQCFV-SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA------------------------ 302 (430)
T ss_pred eeEee-ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh------------------------
Confidence 21100 01123479999999999999999999999999999994322111111000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-------------------------
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL------------------------- 248 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~------------------------- 248 (303)
|... ...+..|+.+++|+++.|.|..+++|.+.++.++.++
T Consensus 303 ---------H~gs-----evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 303 ---------HGGS-----EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVL 368 (430)
T ss_pred ---------cCCc-----eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEE
Confidence 0000 0112345556666666666666666666555333222
Q ss_pred ------------------------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 249 ------------------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 249 ------------------------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
-+|++++..+.-||.++-+.|+|.|..+++|--.
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 1488999999999999999999999999999743
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=5.7e-21 Score=163.96 Aligned_cols=237 Identities=19% Similarity=0.234 Sum_probs=167.6
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|+..+..+.|-++...|++|+.|..|.+|+....+ ....+.+..+.++.+.|.+ .++.+++++.|+.+++|+..
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd-- 249 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVD-- 249 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeecc--
Confidence 799999999999999999999999999999998776 3445667778899999965 47788899999999999975
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
..+....+.||.+.|+++.+......+++|+.|+++++||+.+..+..+.. +.+...++..- ....+..-.+
T Consensus 250 --~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~----~~~~~SgH~D 321 (459)
T KOG0288|consen 250 --SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS----ISDVISGHFD 321 (459)
T ss_pred --chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEec----ceeeeecccc
Confidence 334566789999999999998776669999999999999998743221110 00000000000 0000000012
Q ss_pred CcceEEeccccee--ee--EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCeEEEEECCCCCe
Q 022074 195 QSVATYKGHSVLR--TL--IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPM 266 (303)
Q Consensus 195 ~~~~~~~~~~~~~--~~--~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----~~~I~~v~~sp~~~~ 266 (303)
.++..++...... .+ -.-..+...++++..+.+.+-|.++.+.|.++.+....+.+. ....+.+.|||++.|
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 2233332111100 00 001123446788889999999999999999988776666432 134899999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
+|+||.||.+++|++.+.
T Consensus 402 vaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeccCCCcEEEEEccCc
Confidence 999999999999998754
No 112
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=6.9e-20 Score=153.41 Aligned_cols=242 Identities=23% Similarity=0.378 Sum_probs=162.9
Q ss_pred CcccceEEEEEcCC----CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTD----GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
-|+-..+.++|+-+ .-++|+|+.-|.|||.|+..++....+.+|...|+.+.+.|..+++++++|+|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 35556999999964 23788999999999999999999999999999999999999888999999999999999986
Q ss_pred cccCCCcccee---ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc--cccCc----cceeeeceeeeCC
Q 022074 113 CLNVKGKPAGV---LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--CNLGF----RSYEWDYRWMDYP 183 (303)
Q Consensus 113 ~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~--~~~~~----~~~~~~~~~~~~~ 183 (303)
. ...+.. +.||.+.|.+++|+.+|.+|+++|.|.++++|++....-... +...+ ....+......+|
T Consensus 167 ~----~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 167 T----DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred C----CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 2 222322 467999999999999999999999999999999873110000 00000 0000000000111
Q ss_pred CC-Cc----------------cccCCCCCcceEEecccc------------eeeeEE------E-eeee--eeeCCCeEE
Q 022074 184 PQ-AR----------------DLKHPCDQSVATYKGHSV------------LRTLIR------C-HFSP--VYSTGQKYI 225 (303)
Q Consensus 184 ~~-~~----------------~~~~~~~~~~~~~~~~~~------------~~~~~~------~-~~~~--~~s~~~~~l 225 (303)
.- +. .+.-.|++.+..+..... ..+++. | .|-. .|.+-++.|
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 00 00 001112222222221000 000000 0 0111 234557889
Q ss_pred EEEeCCCeEEEEECCCCeEE--EEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 226 YTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~--~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|.|.+.|.+++||+++.++. .++. .-...|...+||.|+.+|+..++|+++..||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999877652 2222 123579999999999999999999999999953
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2e-20 Score=170.25 Aligned_cols=240 Identities=27% Similarity=0.359 Sum_probs=174.1
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC--CcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+-+.+|.+++.+|+|++|++|..-|+++|||+..-.....+..|...|-|+.|+.+. .++|++++.|..|+++|..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-- 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-- 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc--
Confidence 556799999999999999999999999999998887777888999999999996543 5789999999999999974
Q ss_pred cCCCccceeecccccCeEEEEeCCCC--CEEEEEeCCCcEEEEEcccccCCcccccCcccee-eeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE-WDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (303)
.+--+...+.+|..+|+++.|.-.| ..++++|.|+.+.+=--++......+........ -.+--++..|..+.+..
T Consensus 535 -rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 -RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred -cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 2234567788999999999987766 6789999998875432221110000000000000 00001233333333322
Q ss_pred CC-CCcc-----------eEEecccce-eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 022074 192 PC-DQSV-----------ATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 258 (303)
Q Consensus 192 ~~-~~~~-----------~~~~~~~~~-~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v 258 (303)
.| ++.+ ..++|.... -..++.. ..|.|-|+||...|+++.++|..+|+++..+-+|...|+.+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~----lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI----LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEE----ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 22 2222 233333221 1222222 34678999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCCEEEeecCC
Q 022074 259 SWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 259 ~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|++|.+.|++++.||-|-+|.++.
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999875
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=148.48 Aligned_cols=198 Identities=19% Similarity=0.317 Sum_probs=142.0
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
.+++|..+++.+.|+. ++++|+|+++|.+..+|= ..+++.++.+.||.++|+++++..+..+++||+.|.+++||
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~----s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWY----SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEE----ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 4678999999999975 589999999999999995 24677899999999999999999999999999999999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC------cceEEe---------cccceeeeE---EEeeeee
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ------SVATYK---------GHSVLRTLI---RCHFSPV 217 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~---~~~~~~~ 217 (303)
|+...+..+....+.. ++.+.+...........+. .+..++ .......+. .-.....
T Consensus 80 Dv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred EcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 9987665444322211 1112222222211111100 000000 000000000 0011233
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++|-++++++|.+||.|.+||.++|++ +..-+.|...|+++.||||..+++|+|.|.+.++||+..
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 567789999999999999999999866 445578999999999999999999999999999999753
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.3e-20 Score=159.89 Aligned_cols=213 Identities=17% Similarity=0.212 Sum_probs=152.6
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.||+.+|.+++|+.+ .+.|++||.|.+|.+||+.+++....+..|.+.|.++.|++..+..|++|+.|++|++.|.|..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 489999999999976 4478999999999999999999887777899999999999888999999999999999998843
Q ss_pred cCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
...+... ...+.|-.+.|.+.. ..++++..||+|+-+|+|...
T Consensus 320 ~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------------------------- 363 (463)
T KOG0270|consen 320 SNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------------------------- 363 (463)
T ss_pred cccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------------------------------
Confidence 2222111 123445566666543 468888899999999998642
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCC-eEEEE
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSS 270 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~-~las~ 270 (303)
.++.+.+.|...+..+.. ++ ..-.+++|++.|+.+++|++..-+. ++....-.+...|.++.|+-. +||.|
T Consensus 364 -~~vwt~~AHd~~ISgl~~--n~---~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 364 -KPVWTLKAHDDEISGLSV--NI---QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred -CceeEEEeccCCcceEEe--cC---CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence 123333334322211111 10 1124799999999999999864332 222222224577888888876 68999
Q ss_pred eCCCCEEEeecCCCCccCCC
Q 022074 271 SWDGDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~~~~~~~ 290 (303)
+..+.+++||.....+-.+.
T Consensus 438 G~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred CccceEEEeecccChhHHHh
Confidence 99999999998765444333
No 116
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5.8e-20 Score=163.34 Aligned_cols=247 Identities=19% Similarity=0.268 Sum_probs=168.7
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
+..-|...|..+.|.+....+++++.||++.+|.+... ....++.+|.++|-|++. +.+++.+++|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-PSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-cCCceEEEeeccCce
Confidence 33567788999999999999999999999999999321 134678899999999999 567899999999999
Q ss_pred EEEEcCcc------ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC--C-cccccCccceeee
Q 022074 106 CKVWDRRC------LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS--N-ASCNLGFRSYEWD 176 (303)
Q Consensus 106 v~lWd~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~--~-~~~~~~~~~~~~~ 176 (303)
|+.|++.. ..........+.||.++|+.+++++....|++++.||++|+|+...... . ..+..++ ...++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~-Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY-PLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCC-cceEe
Confidence 99996531 1111123457889999999999998888899999999999998765433 0 0011111 11111
Q ss_pred ceeee--CCCCCccccC--C----CCCcceEEeccc--ceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 177 YRWMD--YPPQARDLKH--P----CDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 177 ~~~~~--~~~~~~~~~~--~----~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
..... .......... . ....+..+.... ........ ...+-+|.+.+.+++.+|+.|+++|..+++.+.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i-n~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI-NKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc-ceEEecCCCCeeEecccCCceecccccccccch
Confidence 00000 0000000000 0 000001110000 00000000 001124567789999999999999999999999
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
....|...++++++-|+|.+|.+++.||.+++|....
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 9999999999999999999999999999999999753
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.2e-20 Score=169.83 Aligned_cols=199 Identities=19% Similarity=0.290 Sum_probs=139.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||..-|+.|+||.+ ++|+++|.|.|||||.+.... ....+.|.+.|+|++|+|.++++|+||+.||.||||++.
T Consensus 366 ~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~--- 440 (712)
T KOG0283|consen 366 KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS--- 440 (712)
T ss_pred hccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC---
Confidence 399999999999964 689999999999999998665 446789999999999999999999999999999999974
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc---e-eeeceeeeC-CCCC-ccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---Y-EWDYRWMDY-PPQA-RDL 189 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~-~~~ 189 (303)
..+ +.....-.+-|+++.+.|+|++.+.|+.+|.+++|+++..+...+....... . .-.+..+.+ +... +.+
T Consensus 441 -d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 441 -DKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred -cCe-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence 222 2222223367999999999999999999999999998765432221110000 0 000111122 2222 234
Q ss_pred cCCCCCcceEEec--ccceeeeEE-----EeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 190 KHPCDQSVATYKG--HSVLRTLIR-----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
....+..+..+++ ...+.+... ......|+.||+++++|++|..|++|+...
T Consensus 519 VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4445556666666 332222111 112345788999999999999999999743
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.2e-19 Score=164.45 Aligned_cols=211 Identities=19% Similarity=0.276 Sum_probs=149.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEecccCC-------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSD------------------------------- 83 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~------------------------------- 83 (303)
++|+.+...|+|.|+|++|++++.||.|++|+.... .....+..+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 589999999999999999999999999999977554 222112113333
Q ss_pred ---------eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 84 ---------VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 84 ---------v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
+++++++ .++++++.||.|=.|++-+.. .......+.+|.+.|.+++++|.+++||+.+.||.|++
T Consensus 90 ~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 3444442 234455555555555554432 22345567789999999999999999999999999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
||+................+ . ...+.+..+.|+|++..|+..+.|+.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~------------------------------~--~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNE------------------------------F--ILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred EEcccchhhhhcccCCcccc------------------------------c--cccceeeeeeecCCCCeEEeeccCCeE
Confidence 99975322111100000000 0 002233346688888888999999999
Q ss_pred EEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 235 YVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+|+....+..+.+. .+..-+.++.|||.|.|||+++.||.|.+||++.
T Consensus 213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999988877664 3445599999999999999999999999999986
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=5.9e-19 Score=167.32 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=176.5
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEee--CCCeEEEEECCCC------------ceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEAN------------KLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs--~Dg~v~lwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
.+..=++..|++|+.+|||..+++|+ .|+.++||+.+.= +...++..|.+.|+|+.|++ ++++|+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lA 85 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLA 85 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEe
Confidence 44444556799999999999999999 8999999976431 12345678999999999974 699999
Q ss_pred EecCCCeEEEEcCcc------cc--------CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 99 SGSDDNLCKVWDRRC------LN--------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 99 s~s~dg~v~lWd~~~------~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+|+.|+.|-+|+... .. ...+....+.+|...|..+.|+|++.+|+++|.|++|.+||.+......
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999998651 00 0112455778999999999999999999999999999999988753221
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCC-CCcceEEeccc-ceeeeEE----------EeeeeeeeCCCeEEEEEe---
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHS-VLRTLIR----------CHFSPVYSTGQKYIYTGS--- 229 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~----------~~~~~~~s~~~~~latg~--- 229 (303)
. +..+..-+....+.|.++.++... ++.+..+.-.. ...+.+. .+..+.+||||++|++..
T Consensus 166 v----l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 V----LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred e----eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 1 122222233455566666665543 34444444111 1122222 122355789999998863
Q ss_pred -CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC------C-------C----eEEEEeCCCCEEEeecCCC
Q 022074 230 -HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS------Q-------P----MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~------~-------~----~las~s~Dg~i~~Wd~~~~ 284 (303)
.-.++.|.+-.+.+.-..|-+|.+|+++++|+|. . . .+|+||.|++|.+|....+
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2445777776666667778899999999999982 1 1 6899999999999997543
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.3e-19 Score=155.45 Aligned_cols=200 Identities=24% Similarity=0.418 Sum_probs=151.6
Q ss_pred EEEEEcC-------CCCEEEEeeCCCeEEEEECCCCceE---E------------------EEecccCCeEEEEEccCCC
Q 022074 43 FSLKFST-------DGRELVAGSSDDCIYVYDLEANKLS---L------------------RILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 43 ~~l~~s~-------~g~~l~sgs~Dg~v~lwd~~~~~~~---~------------------~~~~h~~~v~~l~~~~~~~ 94 (303)
.|+.|.- .|+++|.|+.|..|-|||+.--... . ...+|++.|..+.|+....
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666652 3789999999999999998632211 0 0235888899999987778
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+.|+|||.|.+|++||+. ++++...+.-|...|.++.|++. ..+|++|+.|++|++.|.|..... +.
T Consensus 257 nVLaSgsaD~TV~lWD~~----~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--------~~ 324 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVD----TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--------GK 324 (463)
T ss_pred eeEEecCCCceEEEEEcC----CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------Cc
Confidence 899999999999999986 55667777778999999999874 577999999999999999852110 11
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCC
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHT 252 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~ 252 (303)
.|. ++|. +.+..+.+ + ....++++..||+++-+|+++. +++.+++.|.
T Consensus 325 ~wk-----------------------~~g~-----VEkv~w~~-~--se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 325 EWK-----------------------FDGE-----VEKVAWDP-H--SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred eEE-----------------------eccc-----eEEEEecC-C--CceeEEEecCCceEEeeecCCCCCceeEEEecc
Confidence 111 1111 11111221 1 1245778899999999999875 7799999999
Q ss_pred CCeEEEEECCCCC-eEEEEeCCCCEEEeecCCCC
Q 022074 253 SPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 253 ~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~~ 285 (303)
++|.++++++.-+ +|+|++.|+++++|++....
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 9999999999865 79999999999999997653
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.4e-19 Score=146.77 Aligned_cols=220 Identities=20% Similarity=0.257 Sum_probs=153.0
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce------E----EE-----EecccCCeEEEEEccCCCcEEEE
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL------S----LR-----ILAHTSDVNTVCFGDESGHLIYS 99 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~------~----~~-----~~~h~~~v~~l~~~~~~~~~l~s 99 (303)
..|.++|.++...+ .|+++++|+.||.|.+||++.... . .. -.+|...|..+.|-|-+.-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 78999999999997 588999999999999999987541 1 10 12467789999998766668889
Q ss_pred ecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC---CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeee
Q 022074 100 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 176 (303)
Q Consensus 100 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~ 176 (303)
++.|.++++||.... +..-.| .-.+.|..-+.+| .-.++++|.+|-+||+.|+.... +
T Consensus 120 sSFDhtlKVWDtnTl----Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----~---------- 180 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL----QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----F---------- 180 (397)
T ss_pred ccccceEEEeecccc----eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----c----------
Confidence 999999999996421 111122 1223333333332 23478889999999999986422 1
Q ss_pred ceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEe-------
Q 022074 177 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAAL------- 248 (303)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~------- 248 (303)
--++.||.. .++...|+|. ..-.|++|+.||.|++||++.- -+...+
T Consensus 181 --------------------sH~LsGHr~--~vlaV~Wsp~---~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 181 --------------------SHTLSGHRD--GVLAVEWSPS---SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred --------------------eeeeccccC--ceEEEEeccC---ceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 123444542 2333344442 2456899999999999998643 112222
Q ss_pred -------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCCCccc-ccccc
Q 022074 249 -------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK-RIRRR 299 (303)
Q Consensus 249 -------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~-~~~~~ 299 (303)
..|.+.++.++|+.++.++++.+.|..+++|+....+....++.+. +.++.
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 2567889999999999999999999999999987776666665443 33333
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=6.5e-19 Score=145.75 Aligned_cols=240 Identities=20% Similarity=0.323 Sum_probs=181.1
Q ss_pred eEEEEEcc---CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC---EEEEeeCCCeEEEEECCCCceEEEE
Q 022074 4 IVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~---~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
|-.|.|-| ++|||+...||+. +-.++.++--.+.-|++-++||-.. .+|+|..|-.|+|=|+..|.....+
T Consensus 108 ~WyP~DtGmFtssSFDhtlKVWDt---nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 108 IWYPIDTGMFTSSSFDHTLKVWDT---NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred EEeeecCceeecccccceEEEeec---ccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 45677777 7999999999998 7677677777778899999998543 5777888889999999999999999
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc-------cC-C-Ccc--ceeecccccCeEEEEeCCCCCEEEEE
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL-------NV-K-GKP--AGVLMGHLEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~-------~~-~-~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~ 146 (303)
.+|.++|-++.|+|...-.|++|+.||.||+||+|-. .+ + .++ ...-..|.+.|..+++..++.+++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 9999999999999887888999999999999998621 00 1 111 11234588899999999999999999
Q ss_pred eCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE
Q 022074 147 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226 (303)
Q Consensus 147 ~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 226 (303)
+.|..+++|++......... + .+. +.+....+. ..++ +.+...++
T Consensus 265 gtd~r~r~wn~~~G~ntl~~---~------------g~~-------~~n~~~~~~------~~~~-------~~~s~vfv 309 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLRE---F------------GPI-------IHNQTTSFA------VHIQ-------SMDSDVFV 309 (397)
T ss_pred cCccceEEeecccCcccccc---c------------ccc-------cccccccce------EEEe-------ecccceEE
Confidence 99999999998764322110 0 000 000000000 0000 11222333
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 227 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
--=.++.+.++++-.++.+..++.|-..|.+.++-|+-+...+++.|+++..|-+
T Consensus 310 ~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 310 LFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 3334588999999999999999999999999999999999999999999999987
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=7.2e-20 Score=148.21 Aligned_cols=203 Identities=21% Similarity=0.342 Sum_probs=160.4
Q ss_pred cccCCCcccceEEEEEcC---CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 32 AADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~---~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
+..-.||+.||..++||| +|-+|++++.||.--|=.-++|..+-++.+|++.|...+.+ .+..+.++++.|=+.++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~-~na~~aasaaadftakv 85 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLN-KNATRAASAAADFTAKV 85 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecC-chhhhhhhhcccchhhh
Confidence 334479999999999994 89999999999998887788899999999999999999885 56778889999999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
||.- ++-.+..| .|..-|..++|+.|.++|+|||.++.+|+||+.+.+...
T Consensus 86 w~a~----tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------------------------ 136 (334)
T KOG0278|consen 86 WDAV----TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------------------------ 136 (334)
T ss_pred hhhh----hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------------------------
Confidence 9953 33333344 477889999999999999999999999999997643211
Q ss_pred ccCCCCCcceEEecccc-eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 189 LKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
..+.||.. +++++ |....+.+++...|++||+||.+++..+..+. ...+|+++..|++|++|
T Consensus 137 ---------~E~~ghtg~Ir~v~-------wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 137 ---------KEISGHTGGIRTVL-------WCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRIL 199 (334)
T ss_pred ---------hhhcCCCCcceeEE-------EeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEE
Confidence 11122221 12222 22234667777999999999999999998886 45689999999999988
Q ss_pred EEEeCCCCEEEeecC
Q 022074 268 VSSSWDGDVVRWEFP 282 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~ 282 (303)
.++. .+.+.+||..
T Consensus 200 Tia~-gssV~Fwdak 213 (334)
T KOG0278|consen 200 TIAY-GSSVKFWDAK 213 (334)
T ss_pred EEec-CceeEEeccc
Confidence 7774 6899999965
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=7.4e-18 Score=148.29 Aligned_cols=231 Identities=21% Similarity=0.366 Sum_probs=156.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc----
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---- 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~---- 115 (303)
--|.|++|.++|+ +++|..+|+|.||+..+.+...+...|+++|.+++.. .++. |+||++|..|.+||-....
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGT-LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCcc-EeecCccceEEeccccccccccc
Confidence 4699999999886 8899999999999998888888888999999999985 4464 5579999999999832100
Q ss_pred ----CC----------------------------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC
Q 022074 116 ----VK----------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 116 ----~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
+. .......++|.+..+.++..|+.++++|++.|+.+++|+ ..+..
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 00 001112357888999999999999999999999999998 22222
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc-ceeeeEEE---eeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+... +.+.....+.|...............++... ....+-.+ .....|+|+|.+||.|+.|+.|++|-+
T Consensus 402 wt~~~-----~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 402 WTKII-----EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred EEEEe-----cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 22211 1112223333333111111111111111111 00000001 112348899999999999999999998
Q ss_pred CC-CeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 240 VS-GEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 240 ~~-~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.. +.++... +.|..+|+.++||+|+++|.+-+.|-.|-.|.
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 64 4444443 33448999999999999999999999999994
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.4e-18 Score=135.63 Aligned_cols=203 Identities=25% Similarity=0.373 Sum_probs=152.9
Q ss_pred CCcccceEEEEEcCC----CCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEE-EccCCCcEEEEecCCCeEEEE
Q 022074 36 GGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~----g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~l~s~s~dg~v~lW 109 (303)
+=|...|..++|-.+ |..|++++ .|-.|++-|-.+|+-...+.+|++.+.++. |+ +-+|++|+.|.+||.|
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFW 209 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEE
Confidence 567788999999853 45666655 466788889889988888999999998884 53 5799999999999999
Q ss_pred cCccccCCCccceeecc---cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 110 DRRCLNVKGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
|+|........-..+.+ ...+|.+++..|.|++|++|-.|.++-+||+|....
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------------------------ 265 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------------------------ 265 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce------------------------
Confidence 99843221111111211 235689999999999999999999999999985332
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEEC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWH 261 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~v~~s 261 (303)
+..+..|.... + +..|||.-.|+++++.|..|++=|+. |.+ ......|++.+-.+.|+
T Consensus 266 ----------iq~f~phsadi---r---~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 266 ----------IQRFHPHSADI---R---CVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred ----------eeeeCCCccce---e---EEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEec
Confidence 22222232211 1 22378888999999999999999985 332 33446799999999999
Q ss_pred CCCCeEEEEeCCCCEEEeecC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~ 282 (303)
|+.--+++.+.|.++.+|-.+
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 999999999999999999864
No 126
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=7.3e-19 Score=147.09 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=158.9
Q ss_pred hccccccccccCc-Ccc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceE--EEEe-----cccCCe
Q 022074 16 ESLANVTEIHDGL-DFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLS--LRIL-----AHTSDV 84 (303)
Q Consensus 16 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~--~~~~-----~h~~~v 84 (303)
+--||+|+..||. ..| +.|-.---.+-.++.|+|||++|++| ..++|++||+ +.|+.. .... +..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 3457899999998 222 21111011467899999999999976 6778999999 555432 1122 335678
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~ 163 (303)
.+++|+|.+.+.++.++....+-|+.-. ..++...+-||.++|+.+.+.++|+.|.+|++ |-.|..||+|....
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~- 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD- 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-
Confidence 9999998888899999988887776522 34667778899999999999999999999985 89999999985321
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-C
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-G 242 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~ 242 (303)
++..+.+|.. .+--|+.|. ..|.+++|++|+.||.|++||++. +
T Consensus 286 --------------------------------pv~~L~rhv~-~TNQRI~FD--ld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 286 --------------------------------PVYALERHVG-DTNQRILFD--LDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred --------------------------------hhhhhhhhcc-CccceEEEe--cCCCCceeeccCCCccEEEEecCCCC
Confidence 1111111110 011122232 236789999999999999999987 7
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
+.+..+..|..-++.++++|--+++||++..
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CcccccccccccccceecCcccceeeeccCc
Confidence 7777788899999999999999999999865
No 127
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2.1e-18 Score=150.16 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=157.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE----EE------------E--ecccCCeEEEEEccCCC
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LR------------I--LAHTSDVNTVCFGDESG 94 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~----~~------------~--~~h~~~v~~l~~~~~~~ 94 (303)
.....|..++.++.++|++++.++++.|++|.=|++.+++.. .+ . ..|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 445799999999999999999999999999999999887622 00 1 26778899999975 58
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
++|++|+.|..|.|||.+ +..++..+.+|.+.|.+++|....+.+++++.|++|++|++..+..
T Consensus 215 kylatgg~d~~v~Iw~~~----t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------------ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCD----TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------------ 278 (479)
T ss_pred cEEEecCCCceEEEecCc----ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH------------
Confidence 999999999999999976 4456677899999999999988888899999999999999864321
Q ss_pred eeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~ 254 (303)
+.++-||+.....+.. ..-++.+-.|+-|+++++|++.... ...+.+|.+.
T Consensus 279 ----------------------vetlyGHqd~v~~Ida------L~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~s 329 (479)
T KOG0299|consen 279 ----------------------VETLYGHQDGVLGIDA------LSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGS 329 (479)
T ss_pred ----------------------HHHHhCCccceeeech------hcccceEEeccccceeEEEeccccc-eeeeeCCCCC
Confidence 2223333322111110 1124555556799999999995443 3456789999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+++|-. ...++|||+||+|.+|.+..+
T Consensus 330 idcv~~In-~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred eeeEEEec-ccceeeccCCceEEEeeeccc
Confidence 99999954 456899999999999998643
No 128
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.9e-17 Score=141.92 Aligned_cols=204 Identities=18% Similarity=0.311 Sum_probs=149.2
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce-------EEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.||+.+|..++|+| +...||+||.|-+|.||.+..+.+ ...+.+|...|..++|+|.-.+.|+|++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 59999999999998 556799999999999999987643 3567899999999999887788999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+|++. ++...-.+ .|.+-|.+++|+.+|.+|+|...|+.||+||.|........
T Consensus 158 iWnv~----tgeali~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------------------- 211 (472)
T KOG0303|consen 158 IWNVG----TGEALITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------------------- 211 (472)
T ss_pred EEecc----CCceeeec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec---------------------
Confidence 99975 33333334 39999999999999999999999999999999865422110
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeE---EEEeecCCCCeEEEEEC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWH 261 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~---~~~~~~h~~~I~~v~~s 261 (303)
. ...|....+ . .|-.++.++-||- ++..+.+||..+.+. +.++.. ...|.==-|.
T Consensus 212 -~---------~heG~k~~R----a----ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD 272 (472)
T KOG0303|consen 212 -V---------AHEGAKPAR----A----IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYD 272 (472)
T ss_pred -c---------cccCCCcce----e----EEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeec
Confidence 0 001111111 1 1223455444442 688999999987653 233332 2334444567
Q ss_pred CCCC-eEEEEeCCCCEEEeecCCC
Q 022074 262 PSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
||.. +.+.|-.|++|+.+++...
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCC
Confidence 7776 4678889999999998643
No 129
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-17 Score=149.73 Aligned_cols=195 Identities=21% Similarity=0.347 Sum_probs=149.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
..=++|+. .+.+++|... .|++|+..++.......-+...|+++.|++ .+..|+.|..+|+|.|||.. +.+..
T Consensus 180 ~nlldWss-~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~----~~k~~ 252 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVK----EQKKT 252 (484)
T ss_pred hhHhhccc-CCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehh----hcccc
Confidence 45578884 4567776544 599999999985543333478999999964 68999999999999999975 23345
Q ss_pred eeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
+.+.+ |...|.++++. +..+.+|+.|+.|..+|+|....... .+
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---------------------------------~~ 297 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---------------------------------TL 297 (484)
T ss_pred ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh---------------------------------hh
Confidence 55666 88899999987 66899999999999999986432111 12
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC-CCeEEEEeC--CCCEE
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS-QPMLVSSSW--DGDVV 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~-~~~las~s~--Dg~i~ 277 (303)
.+|.... | ...+++++.++|+|+.|+.+.|||....+.+..+..|...|..++|+|- ..+||+|+. |+.|+
T Consensus 298 ~~H~qeV----C--gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 298 QGHRQEV----C--GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hccccee----e--eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 2232111 1 1236789999999999999999999777888888999999999999995 568888764 99999
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
+||....
T Consensus 372 fwn~~~g 378 (484)
T KOG0305|consen 372 FWNTNTG 378 (484)
T ss_pred EEEcCCC
Confidence 9998644
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=145.06 Aligned_cols=204 Identities=17% Similarity=0.208 Sum_probs=147.1
Q ss_pred CcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
-|..+|.+++|+|..+ .+++|..-|+|-+||+.+.. -...+..|.+.|+++.|+|.+...+++.|.||++|+-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 4567999999999655 78889999999999995322 23456789999999999998889999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC-cccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
++.. ....+-.+..-...+..++++.+...++.+..=|...+||+|..... ....+
T Consensus 264 ~~~~--i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--------------------- 320 (498)
T KOG4328|consen 264 FEGN--ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--------------------- 320 (498)
T ss_pred ecch--hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh---------------------
Confidence 7521 11111111112234567778888778888887789999999864321 00000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEECCCC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~v~~sp~~ 264 (303)
.++++. ..+++|. ...+|||+|.|++++|||+++... +..+ .|..+|.++.|||++
T Consensus 321 ---h~kKI~------------sv~~NP~---~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 321 ---HKKKIT------------SVALNPV---CPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSG 381 (498)
T ss_pred ---hhcccc------------eeecCCC---CchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCC
Confidence 011111 1122232 346899999999999999975432 3333 699999999999998
Q ss_pred CeEEEEeCCCCEEEeecC
Q 022074 265 PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~ 282 (303)
-.|+|.+.|+.|++||..
T Consensus 382 gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CceEeeccCCceEEeecc
Confidence 889999999999999974
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=6.9e-16 Score=134.49 Aligned_cols=257 Identities=15% Similarity=0.111 Sum_probs=155.1
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+..|..+.+|+.-+|..... . .+|. .+.++.|+|+|+.+ ++++.|+.|++||..+++....+..+. .+..+++++
T Consensus 7 ~~~d~~v~~~d~~t~~~~~~-~-~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 82 (300)
T TIGR03866 7 NEKDNTISVIDTATLEVTRT-F-PVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHP 82 (300)
T ss_pred ecCCCEEEEEECCCCceEEE-E-ECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECC
Confidence 44566778887766553221 1 2232 35789999999976 567789999999999887665554443 356778876
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC-cEEEEEcccccCCcccccCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl~~~~~~~~~~~~~ 170 (303)
+...++++++.++.+++||++. ......+. +...+..+.+++++.++++++.++ .+.+||.+............
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~----~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIET----RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCC----CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 5333445566789999999863 22233332 223356788999999999888775 46677876432211110000
Q ss_pred cceeeeceeeeCCCCCccccCC--CCCcceEEecccce-eeeEEE-----------eeeeeeeCCCeEEEE-EeCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHSVL-RTLIRC-----------HFSPVYSTGQKYIYT-GSHDSCVY 235 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~s~~~~~lat-g~~dg~i~ 235 (303)
....+.+.++...+... .+..+..++-.... ...+.. .....+++++++++. .+.++.+.
T Consensus 158 -----~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 158 -----RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred -----CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 01112233333322111 12222222211100 000000 012346788887544 45677899
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE-eCCCCEEEeecCCC
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGN 284 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~-s~Dg~i~~Wd~~~~ 284 (303)
+||..+++.+..+. +...+.+++|+|++++|+++ +.++.|++||+...
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 99999888766553 44579999999999998876 56899999998753
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=137.48 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=145.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.-|...|..+-...++++|++++.|.+|.||+++ |+....+..-...-...+.+ +++..+++++...-|++|..- +.
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~-f~ 260 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPI-FT 260 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEE-ec
Confidence 4677889999999999999999999999999998 55544333222222344554 579999999999999999852 11
Q ss_pred CCC-----ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 116 VKG-----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 116 ~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
..+ ...-.+.||..+|.+++|+++.+.++|.+.||++|+||+...-.. ..+.+.++
T Consensus 261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-------------------~qDpk~Lk 321 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-------------------GQDPKILK 321 (420)
T ss_pred cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-------------------CCCchHhh
Confidence 111 122346799999999999999999999999999999997531100 00111111
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEECCCCCeEEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~~~I~~v~~sp~~~~las 269 (303)
... .......+.. . ....+|+++.||.. ....++++..++|+.+-+++ .|...|.+++|+++|++++|
T Consensus 322 ~g~-~pl~aag~~p-----~----RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 322 EGS-APLHAAGSEP-----V----RLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCC-cchhhcCCCc-----e----EEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 000 0000000000 0 12356788876654 45679999999998776664 79999999999999999999
Q ss_pred EeCCCCEEEee
Q 022074 270 SSWDGDVVRWE 280 (303)
Q Consensus 270 ~s~Dg~i~~Wd 280 (303)
++ |+-+++..
T Consensus 391 cG-dr~vrv~~ 400 (420)
T KOG2096|consen 391 CG-DRYVRVIR 400 (420)
T ss_pred ec-ceeeeeec
Confidence 98 56666665
No 133
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2e-17 Score=135.10 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=152.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.+|...|+++.|..+++ |++|..-|.|.+|++.+......+. .|...|+.+.-.| + ..+.+-+.|+.+.+|++...
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCc
Confidence 58999999999998775 9999999999999999987766666 4556777776644 2 57789999999999986420
Q ss_pred cC--------------------CCccc-------------------------e----eecccccCeEEEEeCC-CCC--E
Q 022074 115 NV--------------------KGKPA-------------------------G----VLMGHLEGITFIDSRG-DGR--Y 142 (303)
Q Consensus 115 ~~--------------------~~~~~-------------------------~----~~~~h~~~v~~~~~~~-~~~--~ 142 (303)
.. ..++. + ...+..+.+.+.++.. .+. +
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 00 00000 0 0011234455555322 232 3
Q ss_pred EEEEeCCCcEEEEEcccccCCcc------cccCccceeeeceeeeCCCCC-ccccCCCCCcce--EEecc---cceeeeE
Q 022074 143 LISNGKDQAIKLWDIRKMSSNAS------CNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVA--TYKGH---SVLRTLI 210 (303)
Q Consensus 143 l~s~~~D~~v~lWdl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~---~~~~~~~ 210 (303)
++.|..+|.+.+||+........ ......+..-+...+++.+.. ..+.......+. .++.. -.++...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 56788899999999976421111 101111111111112221110 001000011111 11111 0000000
Q ss_pred E----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 211 R----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 211 ~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
. .......-||++.+||+|-|++||||..+++..+..++.|.+.|++++|||+.+++|+||.|+.|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 0 0011124589999999999999999999999999999999999999999999999999999999999985
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=7.7e-17 Score=144.52 Aligned_cols=241 Identities=17% Similarity=0.255 Sum_probs=164.8
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+.||+.-|.+|+..|.|.+|++|+.||+||||++.+|..+.++ ...+.|.+++|+|....-++.++....+.+-+...+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 3599999999999999999999999999999999999876543 455689999998754444444444444554432111
Q ss_pred c---------------CCCc------------------cceeecccccCeEEEEeCCCCCEEEEEeC---CCcEEEEEcc
Q 022074 115 N---------------VKGK------------------PAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIR 158 (303)
Q Consensus 115 ~---------------~~~~------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---D~~v~lWdl~ 158 (303)
. .... -++....|...|..+.|+..|.||++... .+.|.|.+|.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 0 0000 01233346778889999999999998654 4788999998
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecc--cceeee---EEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTL---IRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
+...... |+.....+....+.|....+...+...+..++-. ....++ .++..+...++.|..|+.|+.|+.
T Consensus 555 K~~sQ~P----F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 555 KRKSQSP----FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred cccccCc----hhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 7543322 2111112233444444444444444443333211 111111 223334456788899999999999
Q ss_pred EEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 234 VYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 234 i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+..+|+.-. +..+++..|...+++|+||+.-++++||+.||++.++-
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999865 45778899999999999999999999999999999985
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=132.85 Aligned_cols=199 Identities=18% Similarity=0.251 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
-.|+.|++.|.+||+|+.||.|.|||+.|......+.+|..+|++++|++ +++.|+|+|.|..|++||+..+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs----~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS----PL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC----ce
Confidence 67999999999999999999999999999887777889999999999975 58899999999999999986432 23
Q ss_pred eeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
..+ ....+|+.+.++|.. +.++..-.+..-.+-++..... ..+....+.....
T Consensus 101 ~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------------------------~~Lp~d~d~dln~- 154 (405)
T KOG1273|consen 101 KRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------------------------SVLPKDDDGDLNS- 154 (405)
T ss_pred eEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce------------------------eeccCCCcccccc-
Confidence 222 245678888887743 3333333333333333321000 0000000000000
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
... ...|.+.|+++++|...|.+.++|..+.+++..++... ..|..+.|+..|++|+.-+.|++|+.+
T Consensus 155 --------sas---~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 155 --------SAS---HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred --------ccc---cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 000 01356779999999999999999999999998887666 789999999999999999999999999
Q ss_pred ecC
Q 022074 280 EFP 282 (303)
Q Consensus 280 d~~ 282 (303)
+..
T Consensus 224 e~~ 226 (405)
T KOG1273|consen 224 EIS 226 (405)
T ss_pred ehh
Confidence 976
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.7e-17 Score=142.64 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=158.5
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC---------CceEEEEecccCCeEEE
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRILAHTSDVNTV 87 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~---------~~~~~~~~~h~~~v~~l 87 (303)
.-+.+||.=+|.=.. .-.+|=++|.|+.|+.||+.+++||.||.|.+|++.+ -+....+..|+-.|+.+
T Consensus 103 g~lYlWelssG~LL~--v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 103 GNLYLWELSSGILLN--VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred CcEEEEEeccccHHH--HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence 345778887776432 1178999999999999999999999999999997642 12345677899999999
Q ss_pred EEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
...+. ...+++|+|.|.++++||+... .....+ ....++.++...|.++.+..|+.+|.|.+.++-...... .
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-~ 254 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-A 254 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccc----eeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc-c
Confidence 87543 3568999999999999998632 222222 234678899999999999999999999999876432100 0
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
... +...+.....+..+.||..... + .+..++.||.+|++|++||.++|||+.+.+.++
T Consensus 255 ~v~-----------------~k~~~~~~t~~~~~~Gh~~~~~-I---TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 255 GVN-----------------QKGRHEENTQINVLVGHENESA-I---TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred ccc-----------------ccccccccceeeeeccccCCcc-e---eEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 000 0111122234556666655211 1 123467899999999999999999999999888
Q ss_pred EeecCCCCeEEEEECCCCC
Q 022074 247 ALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~ 265 (303)
++....++|+-+.+.|=.+
T Consensus 314 tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 314 TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred HHhhhccccceeEeecccc
Confidence 8866778999999976544
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.75 E-value=2e-16 Score=143.86 Aligned_cols=273 Identities=20% Similarity=0.277 Sum_probs=177.5
Q ss_pred EEccCchhhccccccccccCcCcccccC--------CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEE
Q 022074 8 VDVGSGTMESLANVTEIHDGLDFSAADD--------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLR 76 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~ 76 (303)
+++=|+|||..+=||+- .+-++++. +|-.++++++-|+|+++.+++-+.-|..++|..+.... ...
T Consensus 280 ~~LLSASaDksmiiW~p---d~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKP---DENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hhheecccCcceEEEec---CCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 45668999988878775 33323332 46667899999999999999999999999998433322 223
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
+.+|.++|..+.|.| .+++|+|++.|.+-|++-.-..+.+...+.+.+-|.-...++++-+....|++|+.++.+|+|+
T Consensus 357 iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred cccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 568999999999964 6889999999999999864322223344555667888889999888778899999999999998
Q ss_pred cccc-----cC-Ccccc--------------cC------ccc----eeeeceeee-----------CCCCCccc-cCCCC
Q 022074 157 IRKM-----SS-NASCN--------------LG------FRS----YEWDYRWMD-----------YPPQARDL-KHPCD 194 (303)
Q Consensus 157 l~~~-----~~-~~~~~--------------~~------~~~----~~~~~~~~~-----------~~~~~~~~-~~~~~ 194 (303)
..+. .. ...+. ++ +.. -.....+.. -||....+ .+..-
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 5420 00 00000 00 000 000000000 01110000 00000
Q ss_pred CcceEEecccceeee-------------------------------------EEEe----eeeeeeCCCeEEEEEeCCCe
Q 022074 195 QSVATYKGHSVLRTL-------------------------------------IRCH----FSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~-------------------------------------~~~~----~~~~~s~~~~~latg~~dg~ 233 (303)
..+..+.||.+..+. +..| ....||||+++|++.+-|++
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 001111122111100 0000 12458999999999999999
Q ss_pred EEEEECCCCeE----EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~----~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+|....... ....+.|+.-|++++|+|+..++||+|.|.++++|..+..
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99998754322 2236799999999999999999999999999999997654
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=7.7e-17 Score=140.39 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=152.6
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCce-----------------------------------------
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL----------------------------------------- 73 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~----------------------------------------- 73 (303)
.+|.++|.+|.|+|. -..+++.|.||+||+-|+++...
T Consensus 231 ~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 231 TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred ccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 699999999999985 44799999999999999876531
Q ss_pred ----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 74 ----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 74 ----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
...+.-|+..|+.++++|.++.+|+|++.|++++|||+|.......|.-....|...|.+..|+|.+..|+|.+.|
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 0012346678999999998999999999999999999985432222333445799999999999998889999999
Q ss_pred CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe
Q 022074 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 150 ~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~ 229 (303)
..|||||....... .+|. ..+.|.+.. -+.+ -.|.+.|.|+..++++|-
T Consensus 391 ~~IRv~dss~~sa~------------------~~p~-~~I~Hn~~t----------~Rwl--T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 391 NEIRVFDSSCISAK------------------DEPL-GTIPHNNRT----------GRWL--TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred CceEEeeccccccc------------------CCcc-ceeeccCcc----------cccc--cchhheeCCCccEEEEec
Confidence 99999997421100 0000 001111110 0000 012234567888999999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCC-CeEE-EEECCCCC-eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTS-PVRD-CSWHPSQP-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~-~I~~-v~~sp~~~-~las~s~Dg~i~~Wd~~ 282 (303)
.-..|-|+|...++.+..+-.... .|.+ .+|+|.+. ++|.++.-|.|.+|.-+
T Consensus 440 ~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 440 YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 999999999988887766533222 3443 46999988 66666677889988744
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=8.7e-17 Score=145.07 Aligned_cols=229 Identities=20% Similarity=0.245 Sum_probs=146.5
Q ss_pred EEEEEcC---CCCEEEEeeCCCeEEEEECCCCceE------EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 43 FSLKFST---DGRELVAGSSDDCIYVYDLEANKLS------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 43 ~~l~~s~---~g~~l~sgs~Dg~v~lwd~~~~~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
++..|++ ....|+.+..||.|.++|....... .....|...|..+.|.| ...+|++++.|.++++||++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 5577875 3457888999999999998765433 34668999999999976 677899999999999999864
Q ss_pred ccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
....+. ..+.||...|.+++|.+.+ ..|++|++|+.|.|||+|.-....... + ......+....+...+.+
T Consensus 132 s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~--~-~~~~~~~~n~~ptpskp~--- 203 (720)
T KOG0321|consen 132 SRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE--F-DNRIYGRHNTAPTPSKPL--- 203 (720)
T ss_pred ceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH--H-hhhhhccccCCCCCCchh---
Confidence 333222 2478999999999998854 568999999999999998532100000 0 000000000000000000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCCCeEEEE------ee--cC---CCCeEEEEE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAA------LK--YH---TSPVRDCSW 260 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~------~~--~h---~~~I~~v~~ 260 (303)
.+.+.....+.... .......+.-|...||++|. |+.|+|||++.....+. .+ .| .-.+.++..
T Consensus 204 -~kr~~k~kA~s~ti---~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 204 -KKRIRKWKAASNTI---FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred -hccccccccccCce---eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00011111111100 00111234457788999887 99999999986543222 11 23 234677777
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...|.+|...+.|++|.+|++...
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred cCCCCeEEEEecCCcEEEEecccc
Confidence 778899888888999999998764
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=9.4e-17 Score=146.04 Aligned_cols=214 Identities=15% Similarity=0.247 Sum_probs=150.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCC-----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+||.+.|++++.+|+|+.+|+++... .|+||+..+-.....+..|.-.|+.++|+| ++++|++++.|.++.+|.
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeee
Confidence 69999999999999999999987544 489999988766667899999999999975 589999999999999998
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
................|..-|+.++|+|++.+|+|+|+|++|++|........ +...+.. ..+
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~--~i~~~a~-------~~~-------- 663 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK--YISRFAC-------LKF-------- 663 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh--hhhhhch-------hcc--------
Confidence 53111111112235678888999999999999999999999999976543100 0000000 000
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECC-------CCeE-----EEEeecCCCCeEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV-------SGEQ-----VAALKYHTSPVRD 257 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~-------~~~~-----~~~~~~h~~~I~~ 257 (303)
... .....+.+.+.++. ..++.|-+.|.|.+|... .+.. +.....|...|+.
T Consensus 664 ---~~a------------VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~r 728 (764)
T KOG1063|consen 664 ---SLA------------VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNR 728 (764)
T ss_pred ---CCc------------eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhe
Confidence 000 00111223333333 367788899999999954 1111 1122356778999
Q ss_pred EEECCC--------CC--eEEEEeCCCCEEEeecC
Q 022074 258 CSWHPS--------QP--MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 258 v~~sp~--------~~--~las~s~Dg~i~~Wd~~ 282 (303)
+.|+|. .+ .|++|++|..++++++.
T Consensus 729 l~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 729 LLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999986 22 57999999999998864
No 141
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=1.2e-16 Score=132.81 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=64.5
Q ss_pred ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.++-|.+++|+|....+++.+|+|++||+|++..... ...+....|..+|.++.|+.+|..+++|+.|+++++|||..
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc--ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567999999986677788999999999999752111 11244567889999999999999999999999999999976
Q ss_pred c
Q 022074 160 M 160 (303)
Q Consensus 160 ~ 160 (303)
.
T Consensus 104 ~ 104 (347)
T KOG0647|consen 104 G 104 (347)
T ss_pred C
Confidence 4
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=146.21 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=156.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE---ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
..+.+++.++.|++.+.|...|+|-+|++..|-....+ ..|++.|..++. ..-++.++|++.+|-++.||...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~-D~~n~~~vsa~~~Gilkfw~f~~--- 524 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV-DGTNRLLVSAGADGILKFWDFKK--- 524 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe-cCCCceEEEccCcceEEEEecCC---
Confidence 46889999999999999999999999999999777666 479999999998 34467899999999999999752
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
......+. -..++.++..+.....++.+..|-.|+++|....+ .
T Consensus 525 -k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k----------------------------------v 568 (910)
T KOG1539|consen 525 -KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK----------------------------------V 568 (910)
T ss_pred -cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh----------------------------------h
Confidence 11222221 23456666667777789999999999999975321 2
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-CC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-g~ 275 (303)
+..+.||....+- ..|||||++|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-
T Consensus 569 vR~f~gh~nritd------~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 569 VREFWGHGNRITD------MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hHHhhccccceee------eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCce
Confidence 3334444433322 2488999999999999999999999999876663 45799999999999999999999 88
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
|.+|-....
T Consensus 642 IylWsNksl 650 (910)
T KOG1539|consen 642 IYLWSNKSL 650 (910)
T ss_pred EEEEEchhH
Confidence 999976544
No 143
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=9.7e-18 Score=155.14 Aligned_cols=229 Identities=21% Similarity=0.361 Sum_probs=161.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||..+|+|+.|...|.++++|+.|..|+||.++++.......+|.+.++.++.+. +..+++++|.|..|++|.+.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~--- 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLP--- 262 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecC---
Confidence 39999999999999999999999999999999999988888899999999999854 46688899999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc---ccC----ccceeeeceeeeCCCCCcc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC---NLG----FRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~ 188 (303)
.+.++.++.||+++|++++|+|- .+.+.||++++||-|........ ... +.++.+.-.+..+-....
T Consensus 263 -~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~- 336 (1113)
T KOG0644|consen 263 -DGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR- 336 (1113)
T ss_pred -CCchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC-
Confidence 56778889999999999999984 48889999999998832211110 000 000000000000000000
Q ss_pred ccCCCCCcceEEeccccee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 189 LKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
+.... .|.... ......|...-+.-..+.+++-.+-.+.+|++-+|.++..+.+|..++..+.++|-.+
T Consensus 337 -----d~ea~---n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 337 -----DGEAR---NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred -----Ccccc---cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 00000 000000 0000000000011125677788888999999999999999999999999999999665
Q ss_pred -eEEEEeCCCCEEEeecC
Q 022074 266 -MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 266 -~las~s~Dg~i~~Wd~~ 282 (303)
...+++.||...+||+.
T Consensus 409 ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred HhhhhccCCCceEeeecc
Confidence 67799999999999975
No 144
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=2.5e-16 Score=130.27 Aligned_cols=212 Identities=19% Similarity=0.369 Sum_probs=149.9
Q ss_pred CcccceEEEEEcCCCC----EEEEeeCCCeEEEEECCC--CceEE-------EEecccCCeEEEEEccCCCcEEEEecCC
Q 022074 37 GYSFGIFSLKFSTDGR----ELVAGSSDDCIYVYDLEA--NKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~----~l~sgs~Dg~v~lwd~~~--~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
-|..|+..+.|.|+.+ .+++.+.| .+|||.+.. .+... +-..+..+++..-|+.-+.+++.++|-|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 6889999999999863 24443444 599998874 22211 1123446888889987778999999999
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
-++.+||+... ..+.....+-.|...|..++|...+ ..|++.|.||+||+||||.+... .+.++
T Consensus 173 TTCTiWdie~~-~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--------TIIYE------ 237 (364)
T KOG0290|consen 173 TTCTIWDIETG-VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--------TIIYE------ 237 (364)
T ss_pred CeEEEEEEeec-cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--------eEEec------
Confidence 99999998632 2334455677899999999998754 56899999999999999975421 11110
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCCC-eEEEEeecCCCCeEEEEE
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSG-EQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~ 260 (303)
+|+. ...++|-.++. .|-.++||-.+ ...|-|-|++.- ..+.++..|++.|+.++|
T Consensus 238 ~p~~-------------------~~pLlRLswnk---qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 238 DPSP-------------------STPLLRLSWNK---QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW 295 (364)
T ss_pred CCCC-------------------CCcceeeccCc---CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe
Confidence 0110 00112222221 13456666443 346889999865 458899999999999999
Q ss_pred CCCCC-eEEEEeCCCCEEEeecCCCCc
Q 022074 261 HPSQP-MLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 261 sp~~~-~las~s~Dg~i~~Wd~~~~~~ 286 (303)
.|... .|.|+++|+.+-+||++.+..
T Consensus 296 aPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCCCceeeecCCcceEEEEecccccc
Confidence 99864 899999999999999987644
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.1e-16 Score=144.30 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=149.8
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
..++.++.+++|+.+|+.++.||.|-.|++.++.+......+.+|+++|.++.|.| +++.|++.+-||.|++||+....
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccch
Confidence 68999999999999999999999999999999999988888999999999999965 58899999999999999986432
Q ss_pred CCCcccee---eccc-ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 116 VKGKPAGV---LMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 116 ~~~~~~~~---~~~h-~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
........ ...- ...+.-++|+|++..|+..+.|+.|++|+...-...+....
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~----------------------- 228 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD----------------------- 228 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-----------------------
Confidence 21111111 1111 33456789999988999999999999998643221111100
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
...... .....|+|.|+|||+++.||.|.|||.++-+. ..-...|.+++|.|+.+-+---.
T Consensus 229 -----------~~~ss~----~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 229 -----------KLSSSK----FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred -----------cccccc----eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence 000000 11234788999999999999999999988222 11235799999999998666555
Q ss_pred CCCCEEEee
Q 022074 272 WDGDVVRWE 280 (303)
Q Consensus 272 ~Dg~i~~Wd 280 (303)
..|..-+|.
T Consensus 290 ~~g~~~~~~ 298 (933)
T KOG1274|consen 290 ALGTLGVSP 298 (933)
T ss_pred eccccccCh
Confidence 566766665
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=2.7e-15 Score=137.14 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=153.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEcc-----C-----CCcEEEEecCCCeEEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD-----E-----SGHLIYSGSDDNLCKV 108 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~-----~-----~~~~l~s~s~dg~v~l 108 (303)
-.++.|++...++.+.-.|..++|||++.-.. ...+..|...|..+.--| + -...|.|++.|++||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 67899999999999999999999999976432 234567887777664322 0 1236889999999999
Q ss_pred EcCccccCCCc---------------------------------cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 109 WDRRCLNVKGK---------------------------------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 109 Wd~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
||+........ ......+...++.+++++|+|.+|++|...|.+|+|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99853110000 000112234578899999999999999999999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCC-CC--CccccCCC-C------------CcceEEecccceeeeEE--------
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYP-PQ--ARDLKHPC-D------------QSVATYKGHSVLRTLIR-------- 211 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-~------------~~~~~~~~~~~~~~~~~-------- 211 (303)
||..+....... ..+.++..++|+ |. .+.+.... + ..+.++++|...++.++
T Consensus 487 ~Lq~l~~~~~~e----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 487 DLQELEYTCFME----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred Eehhhhhhhhee----cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 987643221111 111111111111 00 00000000 0 00111222211111100
Q ss_pred ----E-------------------------------eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec---CCC
Q 022074 212 ----C-------------------------------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTS 253 (303)
Q Consensus 212 ----~-------------------------------~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~---h~~ 253 (303)
| .+.....|.-++++++++|+.|+|||+.+|+..+.|++ |++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 0 00111245678999999999999999999999999974 667
Q ss_pred CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 254 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 254 ~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
..-.+...|.|.||||.+.|.+|.++|+-++
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 8889999999999999999999999998654
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=3.1e-17 Score=139.22 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.++.|+|... .|++|..|+.|.|||+.++....++. -+...+.++|+| .+-.|++|++|..++.+|.+.. .+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l---~~ 263 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL---SR 263 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhh---cc
Confidence 378888888766 56667799999999999998765443 234678999988 6888999999999999998743 45
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
+...+.+|..+|..++|+|.|..|++||.|++||||..+.......+
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--------------------------------- 310 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--------------------------------- 310 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh---------------------------------
Confidence 77888999999999999999999999999999999987653221100
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~ 247 (303)
..+.+.-.++..||.|.+|+++|+.|+.|++|.....+++..
T Consensus 311 ------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 311 ------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred ------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 000111223445788999999999999999999765554443
No 148
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.5e-16 Score=135.16 Aligned_cols=200 Identities=21% Similarity=0.256 Sum_probs=146.1
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
.+++|+.+|..+++|+.||++|+|+.+..........|.+.|.++.|++ +++.|++.+.| ..++|+.... ....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g----~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG----AALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC----chhh
Confidence 7899999999999999999999999888777777888999999999975 68899999999 9999997633 1221
Q ss_pred eec--ccccCeEEEEeCCCC-----CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 123 VLM--GHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 123 ~~~--~h~~~v~~~~~~~~~-----~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
... +.......+.|+.++ ..++....-+.|+.||+...+...... ..+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-------------------------~~~ 276 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-------------------------LRK 276 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-------------------------hhh
Confidence 111 122234455566555 233445566778888765321110000 000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+..+ ....+.+.|.+|+++|.|+.||.|.|++..+.+.+..+ +.|..-|+++.|+||.+++++.+.|.
T Consensus 277 ~~~~~----------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 277 KIKRF----------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhcc----------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 01100 01123346789999999999999999999998876655 58999999999999999999999999
Q ss_pred CEEEeecCC
Q 022074 275 DVVRWEFPG 283 (303)
Q Consensus 275 ~i~~Wd~~~ 283 (303)
++.+-.++.
T Consensus 347 ~~~v~~l~v 355 (398)
T KOG0771|consen 347 EAAVTKLAV 355 (398)
T ss_pred ceeEEEEee
Confidence 999999875
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.9e-17 Score=154.15 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=164.9
Q ss_pred cceEEEEEcCCCCE----EEEeeCCCeEEEEECCC---Cc---eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 40 FGIFSLKFSTDGRE----LVAGSSDDCIYVYDLEA---NK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 40 ~~v~~l~~s~~g~~----l~sgs~Dg~v~lwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
.+++.++|.+.|.. |+.|..||.|.+||... +. .+.+...|++.|..+.|++..+++|++|+.||.|.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 47899999998887 88888999999999865 22 2234567999999999999889999999999999999
Q ss_pred cCccccCCCcccee-ecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC-C
Q 022074 110 DRRCLNVKGKPAGV-LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-A 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 186 (303)
|+...+ .+... -....+.|.+++|+.. .+.|++++.++.+-|||+|..+.+-........ ..+..+.+.|+ .
T Consensus 145 Dlnn~~---tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~--~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPE---TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR--MHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcC---CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--cceeeeeeCCCCc
Confidence 986322 22211 1224567999999875 456789999999999999986544333221110 11111222222 1
Q ss_pred ccc-cCCCC---------------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 187 RDL-KHPCD---------------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 187 ~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
..+ ....+ ..+..+.+|..- ++...|++ .|..+|++++.|+.|.+|+..+++.+..+..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--ilslsWc~---~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--ILSLSWCP---QDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccc--eeeeccCC---CCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 111 11111 112222344311 12222222 2558999999999999999999999999988
Q ss_pred CCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
...++.++.|.|..+ +++.++-||.|.++.+.+.
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 889999999999987 8999999999999998654
No 150
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=3.4e-15 Score=124.86 Aligned_cols=236 Identities=19% Similarity=0.225 Sum_probs=151.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 87 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l 87 (303)
+-||+.|--|+|.+.-...+.. +.--|...|.++.|.++-. .|++|+.||.|.+|+...-.+...+.+|.+.|+.+
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred EeccCCCCcEEEEeccchhhhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 4688999999999886666552 3467899999999998765 89999999999999998888888899999999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
+.+| .+++.++.+.|+.+++|++- +++....+ ..+.... +.|++.|.+|+.++. ..|-+|.+..-......
T Consensus 134 siHP-S~KLALsVg~D~~lr~WNLV----~Gr~a~v~~L~~~at~--v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i 205 (362)
T KOG0294|consen 134 SIHP-SGKLALSVGGDQVLRTWNLV----RGRVAFVLNLKNKATL--VSWSPQGDHFVVSGR-NKIDIYQLDNASVFREI 205 (362)
T ss_pred EecC-CCceEEEEcCCceeeeehhh----cCccceeeccCCccee--eEEcCCCCEEEEEec-cEEEEEecccHhHhhhh
Confidence 9964 68899999999999999973 22211111 1232222 667888988888877 46788876542211000
Q ss_pred ccCccceeeece---eeeCCCC--CccccCCC-CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 167 NLGFRSYEWDYR---WMDYPPQ--ARDLKHPC-DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
....+.+..... .+....+ ...+.... ..+...+.+|....+-+... -.+++.+|+|+|+||.|++||++
T Consensus 206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~----~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY----TNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE----ecCCceEEEEeccCceEEEEEcc
Confidence 000000000000 0000000 00001111 22344556665544433222 23567899999999999999998
Q ss_pred CC-----eEEEEeecCCCCeEEEEE
Q 022074 241 SG-----EQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 241 ~~-----~~~~~~~~h~~~I~~v~~ 260 (303)
.. +.+..+.. ..+++|+..
T Consensus 282 ~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 282 METKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ccccCCcceeEEeec-CCccceeee
Confidence 65 34555543 445666554
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=1.5e-15 Score=130.64 Aligned_cols=265 Identities=18% Similarity=0.299 Sum_probs=176.9
Q ss_pred CchhhccccccccccCcCcc-------cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC--------C-----C
Q 022074 12 SGTMESLANVTEIHDGLDFS-------AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--------A-----N 71 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~--------~-----~ 71 (303)
+|.-|+-|-+|.+.++.... -...++|..+|+++.|+|+|+.+++|+.+|.|.+|-.. + .
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 45557777888887766442 23457999999999999999999999999999999665 2 1
Q ss_pred ---ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC
Q 022074 72 ---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 72 ---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
.....+.+|...+..++|++ ++..+++++.|.++++||+. .+.....+.+|..-|..+++.|.+.++++-+.
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVH----AGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred cceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEec----cceeEeeccccccccceeecchhhhhhhhhcc
Confidence 12244667999999999975 57899999999999999986 45566677889999999999999999999999
Q ss_pred CCcEEEEEcccccCCcccc-----------cCcccee-ee-------ceeeeCCCCCccccCCCC----------CcceE
Q 022074 149 DQAIKLWDIRKMSSNASCN-----------LGFRSYE-WD-------YRWMDYPPQARDLKHPCD----------QSVAT 199 (303)
Q Consensus 149 D~~v~lWdl~~~~~~~~~~-----------~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~----------~~~~~ 199 (303)
|+..+.+.+.......-+. ...+... +. .+...+.|++..+..+.. +....
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYv 265 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYV 265 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEe
Confidence 9987877654321111000 0000000 00 112233344433332221 11122
Q ss_pred Eeccccee----------eeEEEeeeeee-------------e-CCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCC
Q 022074 200 YKGHSVLR----------TLIRCHFSPVY-------------S-TGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSP 254 (303)
Q Consensus 200 ~~~~~~~~----------~~~~~~~~~~~-------------s-~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~ 254 (303)
++++..-+ ..+...++|++ + |.+-.+|.+. ...+++||.++-+++... ..|=.+
T Consensus 266 fsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~ 344 (434)
T KOG1009|consen 266 FSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA 344 (434)
T ss_pred eccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeee
Confidence 22221111 11112223321 1 2334456665 557999999988876655 467789
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|++++||+||.+|+..|.||-+.+=.+.
T Consensus 345 iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 345 ITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ecceeecCCCcEEEEeccCCceEEEEEc
Confidence 9999999999999999999988876654
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.8e-15 Score=136.20 Aligned_cols=230 Identities=15% Similarity=0.201 Sum_probs=166.5
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEE
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 97 (303)
.|.+|-...+.-.+....++-...|-+++|+ +|.+|.+.+-+|.|.=||+.+.+....+..-.+.+..++.+|. .+.+
T Consensus 48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-~~~l 125 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-NTIL 125 (691)
T ss_pred cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-cceE
Confidence 3444444444433333335566789999999 5667999999999999999999887777777788999999765 5788
Q ss_pred EEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+.|+.||.+..++... ..-.....+....+.+.+++|++++..+++|+.||.||+||.......- .....
T Consensus 126 ~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-------~~~~~- 195 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-------IITMQ- 195 (691)
T ss_pred EeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-------Eeeec-
Confidence 8899999666666431 1112233455556789999999999999999999999999986532110 00000
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 257 (303)
+..+. +....+.|+..|=.+ ..+++|.+-|+|.+||...+.++..++.|...|.+
T Consensus 196 -------------------~d~l~-----k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 196 -------------------LDRLS-----KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred -------------------ccccc-----cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 00000 000112233333333 46899999999999999999999999999999999
Q ss_pred EEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 258 CSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++-++++..+++++.|+.+.-+...++
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCC
Confidence 999999999999999999998876554
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.4e-15 Score=124.92 Aligned_cols=241 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+-..+||..||.+++||+||+.|+++|.|..|.+||+..|....++ ..+.+|..+.|+|.+.+.++..-.+..-.+-+.
T Consensus 58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 4455899999999999999999999999999999999999865544 466789999998766555544433332333332
Q ss_pred ccccCCCccceeeccc----cc-CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 112 RCLNVKGKPAGVLMGH----LE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h----~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
... ....+... .+ .-.+..|.+.|+++++|..-|.+.++|....+...+++... .-.++.+.++..+
T Consensus 137 s~~-----~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 137 SDP-----KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKG 208 (405)
T ss_pred cCC-----ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---heeeeEEEEeccC
Confidence 210 01111111 01 11122478899999999999999999988776665554321 0111122222222
Q ss_pred ccccC-CCCCcceEEecccceee---------------eEEEee-eeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEe
Q 022074 187 RDLKH-PCDQSVATYKGHSVLRT---------------LIRCHF-SPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~-~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~ 248 (303)
..+.. ..++.+.++........ +-+-.| +-.||.+|.|++.|+ ....++||.-..|.+++.+
T Consensus 209 ~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 209 RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 22211 22334444332211100 000001 112677899888776 4667999999999999999
Q ss_pred ecCC-CCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 249 KYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 249 ~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+.+ ....++.|+|-.+.+++- ..|++++|...
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 8887 578899999999999999 67999999854
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=141.53 Aligned_cols=198 Identities=22% Similarity=0.384 Sum_probs=146.7
Q ss_pred ceEEEEEcCC-----CCEEEEeeCCCeEEEEECCCCceEEEEeccc------CCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 41 GIFSLKFSTD-----GRELVAGSSDDCIYVYDLEANKLSLRILAHT------SDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 41 ~v~~l~~s~~-----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
+|..+++.-. .+.+++.-.+..++.|+......-.-...++ ..+.+++.+ .+|+..+.|...|+|-+|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEE
Confidence 4555555532 2344445566779999997765422222333 577888885 589999999999999999
Q ss_pred cCccccCCCccceee---cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 110 DRRCLNVKGKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+..+ +.....+ ..|.++|+.++...-++.+++++.||.+++||........+..++
T Consensus 476 NmQS----Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~----------------- 534 (910)
T KOG1539|consen 476 NMQS----GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG----------------- 534 (910)
T ss_pred Eccc----CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----------------
Confidence 9753 3233344 468999999999888899999999999999998653221111100
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
+ . ... +.++.....+|.+..|-.|+++|..+.+.+..|.+|.+.|++++|||||++
T Consensus 535 ------~--~----------~~~------iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 535 ------S--S----------ITG------IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ------C--C----------cce------eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 0 0 001 122333567889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
|++++.|++|++||++..
T Consensus 591 lisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTG 608 (910)
T ss_pred EEEeecCCcEEEEeccCc
Confidence 999999999999999875
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=4.3e-14 Score=124.85 Aligned_cols=258 Identities=18% Similarity=0.251 Sum_probs=161.8
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE---Eecc-cCCeEEEEEcc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH-TSDVNTVCFGD 91 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~---~~~h-~~~v~~l~~~~ 91 (303)
+|+.+||+--.|.... +...-+-.|..+.|+|.+..++.-...|.+..|++.++.+.++ +..+ ...|.|++|.
T Consensus 179 ~h~lSVWdWqk~~~~~--~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~- 255 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLG--PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL- 255 (626)
T ss_pred ccccchhhchhhhccC--cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc-
Confidence 4666788754444332 2223334589999999777666656677899999999876544 2232 2579999996
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc--ccCCccc-cc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK--MSSNASC-NL 168 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~--~~~~~~~-~~ 168 (303)
++++ ++||..+|.+.+|+.+. .+.......|..+|.++....+|. |++|+.|+.|..||-.. .....-. ..
T Consensus 256 engd-viTgDS~G~i~Iw~~~~----~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 ENGD-VITGDSGGNILIWSKGT----NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred CCCC-EEeecCCceEEEEeCCC----ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhc
Confidence 4454 56999999999999752 222222337999999998888885 66699999999998321 1110000 00
Q ss_pred C-ccc--------eeeecee------------------------eeC-CCCCccccCCCCCcceEEecccceeee--EEE
Q 022074 169 G-FRS--------YEWDYRW------------------------MDY-PPQARDLKHPCDQSVATYKGHSVLRTL--IRC 212 (303)
Q Consensus 169 ~-~~~--------~~~~~~~------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 212 (303)
+ .+. +....++ +.. |.....+....+..+..++.|...=+. ..-
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDP 409 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCc
Confidence 0 000 0000000 000 111111111112223334433321111 011
Q ss_pred eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 213 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 213 ~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.-+..|+|.| .+|.|...|.-.+.|.++.+.+..... ..+++.++|||+|.+||.|+.|+.|.++.+..+
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 1234577878 889999999999999988776655444 789999999999999999999999999998755
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=9.9e-16 Score=135.02 Aligned_cols=238 Identities=16% Similarity=0.202 Sum_probs=147.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEE--ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.|.--|.++.+|...+++++|+. |.|+|||+..... +..+ ..-+.-+..+...+ +++.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 56677889999998999999875 5699999965421 1111 12234566666654 5788889999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.... .+....+....-+..+++.++|.+..+++-.||.|+|||++.......+. .+.-....+....++..+..
T Consensus 495 AapT--prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq----GhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 495 AAPT--PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ----GHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred cCCC--cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc----CCCCCceeEEecCCCceeec
Confidence 6432 22222333333456678899999999999999999999998643322211 11000111122222222211
Q ss_pred C-CCCcceEEecccceee----eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 192 P-CDQSVATYKGHSVLRT----LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 192 ~-~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
. -+..+..|+-...... -..-.|+.-++|++.+|+.|=+.+.+.+-.....+ .+.+..|+.-|.++.|++.|++
T Consensus 569 GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCce
Confidence 1 1222222221110000 00112334455667777777777777666654333 3455678899999999999999
Q ss_pred EEEEeCCCCEEEeecCC
Q 022074 267 LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~ 283 (303)
++|.+.|..+..|..+-
T Consensus 648 fvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPY 664 (705)
T ss_pred eeecCchhhhhhccCcc
Confidence 99999999999998653
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=5.1e-15 Score=122.53 Aligned_cols=223 Identities=23% Similarity=0.349 Sum_probs=155.3
Q ss_pred ccccccccccCcCcc--------cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-EEEEe-----cccC
Q 022074 17 SLANVTEIHDGLDFS--------AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL-----AHTS 82 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~-----~h~~ 82 (303)
+-++||.+=-.+..+ +.-++.+-+.|.|+.|.|+++.+++-. |..|.+|++..+.. ...+. .|..
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence 445777774444332 111235556999999999999999875 77899999988764 22221 2334
Q ss_pred CeEEEEEcc-CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccc
Q 022074 83 DVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 83 ~v~~l~~~~-~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~ 160 (303)
..+.-+|+| -+++.+++.+ |+++..||+|... +.-.....|.-.|..++|+|+- .+|+|+|.|+.||+||+|+.
T Consensus 172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~---~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK---KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred eecccccCCCCccceEEEeC-CCcEEEEEccchh---hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 556678876 4577776655 7899999998432 2233445687889999999874 55899999999999999864
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
+. ++..+.+|......+|++ |. ..+++++||.|..+-+|...
T Consensus 248 k~---------------------------------pv~el~~HsHWvW~VRfn--~~---hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 248 KF---------------------------------PVQELPGHSHWVWAVRFN--PE---HDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred Cc---------------------------------cccccCCCceEEEEEEec--Cc---cceEEEecCCCceeEEEecc
Confidence 32 233444555444444432 21 24789999999999999753
Q ss_pred CC-----------------------------eEEEEeecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecC
Q 022074 241 SG-----------------------------EQVAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFP 282 (303)
Q Consensus 241 ~~-----------------------------~~~~~~~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~ 282 (303)
.- ..+.++..|++.|.+++||.-.++ +||-|.||.+.+=.++
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 20 123466789999999999998885 8899999999886554
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=131.45 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=147.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
+|.+++|+.+.+.||++-.||.|-||++..+-... .+.++ +..|..++|. + +..|+|.+.+|.|.-||+- +.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e-~~RLFS~g~sg~i~EwDl~----~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-E-GGRLFSSGLSGSITEWDLH----TL 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-c-CCeEEeecCCceEEEEecc----cC
Confidence 69999999999999999999999999998875443 34444 4689999996 3 5578899999999999974 44
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
++.........++++++.+|.+..++.|..||.+..++...........
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~------------------------------- 149 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS------------------------------- 149 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-------------------------------
Confidence 5555666667889999999999999999999977777654321110000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec--------CCCCeEEEEECCCCCeEEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--------HTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--------h~~~I~~v~~sp~~~~las~ 270 (303)
+.... .-.++..|++++..+++|+.||.|++||.++++.+..... -..-||++.|- ....||+|
T Consensus 150 -l~rq~------sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sg 221 (691)
T KOG2048|consen 150 -LMRQK------SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASG 221 (691)
T ss_pred -ccccc------ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEe
Confidence 00000 0012345778888899999999999999999987663221 12347888887 45579999
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
+.-|++++||..
T Consensus 222 DS~G~V~FWd~~ 233 (691)
T KOG2048|consen 222 DSAGTVTFWDSI 233 (691)
T ss_pred cCCceEEEEccc
Confidence 999999999964
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=2.3e-14 Score=124.86 Aligned_cols=186 Identities=17% Similarity=0.121 Sum_probs=126.7
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccC
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~ 130 (303)
++.+++++.|+.+++||+.+++....+..+. .+..++|+++...++++++.++.|++||.+.. +....+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-
Confidence 3568889999999999999988766665553 46778997653334467788999999997532 22333333333
Q ss_pred eEEEEeCCCCCEEEE-EeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeee
Q 022074 131 ITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 209 (303)
Q Consensus 131 v~~~~~~~~~~~l~s-~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (303)
+..+.++++++.+++ ++.|+.+++||++...... .+.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~----------------------------------~~~~~~~---- 116 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA----------------------------------EIPVGVE---- 116 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe----------------------------------EeeCCCC----
Confidence 456788999987754 5568999999986421100 0000000
Q ss_pred EEEeeeeeeeCCCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE-EEeCCCCEEEeecCCC
Q 022074 210 IRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 210 ~~~~~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la-s~s~Dg~i~~Wd~~~~ 284 (303)
.....++|+++++++++.++ .+++||..+++.+..+... ..+..++|+|++++|+ ++..++.+++||....
T Consensus 117 ---~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 117 ---PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ---cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 01124678899999888765 5778899888776554433 3467899999999775 5556999999998753
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=7e-14 Score=125.46 Aligned_cols=225 Identities=29% Similarity=0.486 Sum_probs=162.7
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEE-cCCCC-EEEEeeC-CCeEEEEECCC-CceEEEEecccCCeEEEEEc
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGR-ELVAGSS-DDCIYVYDLEA-NKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~g~-~l~sgs~-Dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~ 90 (303)
.+..+.+|+...+..........+...+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|..+.|+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence 566777777765541211121223246777777 88887 5555455 99999999988 66777788999999999997
Q ss_pred cCCCcEEEEecC-CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCccccc
Q 022074 91 DESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 91 ~~~~~~l~s~s~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
+. +..+++++. |+.+++|+... ......+.+|...|..+++.+++. .+++++.|+.+++||.+.......
T Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--- 236 (466)
T COG2319 165 PD-GKLLASGSSLDGTIKLWDLRT----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--- 236 (466)
T ss_pred CC-CCEEEecCCCCCceEEEEcCC----CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee---
Confidence 64 557778875 99999999752 345666777999999999999887 566669999999997652110000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEE
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAA 247 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~ 247 (303)
.+.+|.... .. .|++++.++++++.|+.+++||...... +..
T Consensus 237 ------------------------------~~~~~~~~~-~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 237 ------------------------------TLSGHSDSV-VS------SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred ------------------------------ecCCCCcce-eE------eECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 111111110 00 3667778888999999999999986654 444
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+..|..++.++.|+|++..+++++.|+.+.+|+....
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 4678899999999999998888999999999987644
No 161
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=125.43 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=149.0
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCc-EEEEecCCCeEEEEcCccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~-~l~s~s~dg~v~lWd~~~~ 114 (303)
-..+|.++.|+|....+++++.||+++||-++... .+..+.--.-++.+.+|.|+ ++ .+++++.....+.||+...
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC-CceEEEecccceEEEEeecccc
Confidence 35689999999999999999999999999886543 22333334468889999764 55 8999999999999998633
Q ss_pred cCCCccceeeccccc-CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
.. .++..+.|+.. .+....+++++++|+..|..|.|.+--........++
T Consensus 291 k~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------------------------- 341 (514)
T KOG2055|consen 291 KV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------------------------- 341 (514)
T ss_pred cc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------------------------
Confidence 22 23344455553 4667788999999999999999999865432221111
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~ 272 (303)
+-...+. ...|+.+++.|+..+.+|.|++||+.+...+..+.... -.-++++.|+++.+||+||.
T Consensus 342 -------KieG~v~-------~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 342 -------KIEGVVS-------DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred -------eeccEEe-------eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 1111101 11256788899999999999999999998888775221 23478888999999999999
Q ss_pred CCCEEEeecCC
Q 022074 273 DGDVVRWEFPG 283 (303)
Q Consensus 273 Dg~i~~Wd~~~ 283 (303)
.|.+.++|...
T Consensus 408 ~GiVNIYd~~s 418 (514)
T KOG2055|consen 408 SGIVNIYDGNS 418 (514)
T ss_pred cceEEEeccch
Confidence 99999999553
No 162
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.5e-14 Score=129.47 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=144.7
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCC
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
...-+.++-++-+.||+. +|.+.. ...+|+..+.+..|||||++|+..+.+ ..|++||+.++.... +....+.
T Consensus 174 v~~~~~~~~~~~i~i~d~-dg~~~~--~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~ 249 (429)
T PRK01742 174 VVQKNGGSQPYEVRVADY-DGFNQF--IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH 249 (429)
T ss_pred EEEEcCCCceEEEEEECC-CCCCce--EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc
Confidence 333333344567777775 565542 235778889999999999999987754 369999998875432 2222233
Q ss_pred eEEEEEccCCCcEEEEe-cCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 022074 84 VNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 161 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~ 161 (303)
...++|+|+ ++.|+.+ +.+|.+.||.... .......+..+...+....|+|+|+.|+..+ .++..+||++....
T Consensus 250 ~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 250 NGAPAFSPD-GSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred cCceeECCC-CCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 456889765 6666554 5788777764321 1122334555666677889999999876554 67899999875311
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
.. ..... +. . ..+.++|++++++..+.++ +.+||+.+
T Consensus 326 ~~---------------------------------~~~l~-~~-------~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 326 GG---------------------------------ASLVG-GR-------G-YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred CC---------------------------------eEEec-CC-------C-CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 00 00000 00 0 1245788999998887765 55699988
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++.......+ ...++.|+||+++|+.++.++...+|++
T Consensus 363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 8754322222 3467889999999999999999998875
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.63 E-value=6.8e-15 Score=129.64 Aligned_cols=199 Identities=18% Similarity=0.310 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
-.|++......++++|+..++|+|||++.......+..|..-|+++.++. .+.++++++..|.|.+-.+.. +...
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t----~~~t 156 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKT----KQKT 156 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEeccc----Cccc
Confidence 34555556668999999999999999996555556778999999999964 478999999999999987642 2222
Q ss_pred eeecccc--cCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 122 GVLMGHL--EGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 122 ~~~~~h~--~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
..| +|. ..|.-+.+++..+ +|.+++.+|.|.+||+..+.+.......
T Consensus 157 t~f-~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~----------------------------- 206 (673)
T KOG4378|consen 157 TTF-TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA----------------------------- 206 (673)
T ss_pred cce-ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-----------------------------
Confidence 233 343 3466788888654 4678999999999998754432211000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
|. ..+..++|+| .+..+|++.|.|..|.+||.........+. ...|...++|+++|.+|+.|...|.|..
T Consensus 207 ----Hs--AP~~gicfsp---sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 207 ----HS--APCRGICFSP---SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ----cc--CCcCcceecC---CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEE
Confidence 00 0011122333 246789999999999999998766655554 4458999999999999999999999999
Q ss_pred eecCCCC
Q 022074 279 WEFPGNG 285 (303)
Q Consensus 279 Wd~~~~~ 285 (303)
+|+.+..
T Consensus 277 YD~R~~k 283 (673)
T KOG4378|consen 277 YDMRSTK 283 (673)
T ss_pred EecccCC
Confidence 9987653
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=4.2e-14 Score=131.09 Aligned_cols=247 Identities=19% Similarity=0.246 Sum_probs=149.5
Q ss_pred CcccceEEEEEcCCCC--EEEEe------------------eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcE
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAG------------------SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sg------------------s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 96 (303)
-+...+.++.|.+++. ...+. ..++.+.||+++..........-...|.+++|+|.++++
T Consensus 178 ~~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~l 257 (555)
T KOG1587|consen 178 SPKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNL 257 (555)
T ss_pred chhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcce
Confidence 4556677777777665 11111 023468999998875444455566789999999989999
Q ss_pred EEEecCCCeEEEEcCccccCC--CccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccc-cCcc
Q 022074 97 IYSGSDDNLCKVWDRRCLNVK--GKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCN-LGFR 171 (303)
Q Consensus 97 l~s~s~dg~v~lWd~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~~~ 171 (303)
++.|..+|+|.+||++..... .........|.++++.+.+-.+ +.-|++++.||+|..|+++......... ....
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 999999999999999744321 1112233468888888776543 3459999999999999988754311100 0000
Q ss_pred -------ceeeeceeeeCCCCCc-cc-cCCCCCcceE-------------EecccceeeeEEEeeeeeeeC-CCeEEEEE
Q 022074 172 -------SYEWDYRWMDYPPQAR-DL-KHPCDQSVAT-------------YKGHSVLRTLIRCHFSPVYST-GQKYIYTG 228 (303)
Q Consensus 172 -------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~-~~~~latg 228 (303)
........+++++... .+ .....+.+.. ++++.........+....++| ..+.+.++
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 0000111222222111 11 1111111111 111111110001111111122 12456666
Q ss_pred eCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 229 SHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 229 ~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
+ |.+++||... .-.++..++.+.+.|++++|||..+ +++++..||.|.+||+...
T Consensus 418 g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 418 G-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred c-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 6 9999999988 5567888888888999999999987 7899999999999998643
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=7.1e-14 Score=127.21 Aligned_cols=239 Identities=19% Similarity=0.268 Sum_probs=154.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC----
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---- 116 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~---- 116 (303)
.|+.++|-|||..++.+..| .+.|||...|.+..++.+|++-|.|++|+ .++++|+||+.|+.|.+|.-+....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceeeec
Confidence 69999999999998887655 59999999999999999999999999996 4699999999999999997431100
Q ss_pred -CC-------ccc------e-------------eecccc--cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 117 -KG-------KPA------G-------------VLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 117 -~~-------~~~------~-------------~~~~h~--~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
.. .|. + ....|. ..+.+++|..||.+|+-|-.||+|.+=+-......-..+
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence 00 000 0 011122 346677888999999999999998886532211100000
Q ss_pred -cCccceeeeceeeeCCCC--CccccCCCC-Cc--ceEEecccceeeeEEEeee---eeeeCCCeEEEEEeCCCeEEEEE
Q 022074 168 -LGFRSYEWDYRWMDYPPQ--ARDLKHPCD-QS--VATYKGHSVLRTLIRCHFS---PVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~---~~~s~~~~~latg~~dg~i~iwd 238 (303)
.+.-+..|.+.+...... ...+..... +. -..++|...- +.-.-.|. ..|-++|.+++.||.|+.+++|-
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-ccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 000111222221111100 000110000 00 0111221110 00001111 23567899999999999999996
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.|-.+.++.....+||.++..|+++.++.|+.||+|-.+++..
T Consensus 251 -R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 251 -RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 56788888877778999999999999999999999999998653
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=129.53 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=110.4
Q ss_pred cCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCC-CcEEEEecCC
Q 022074 26 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDES-GHLIYSGSDD 103 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~s~d 103 (303)
++++. ++...||++=|.|+.|+.+|..|++||.|-.+.|||.-..++...+ .+|...|.++.|.|.. +.+++||+.|
T Consensus 38 rrL~l-E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 38 RRLDL-EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhcch-hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 44444 5567999999999999999999999999999999999877766554 4799999999997753 5678899999
Q ss_pred CeEEEEcCccccC------CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccc
Q 022074 104 NLCKVWDRRCLNV------KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 104 g~v~lWd~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~ 160 (303)
..|+++|+..... ...+...+..|.+.|.-++..|++ +.+.+++.||++|=+|+|..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9999999863111 123445667799999999988888 78999999999999999863
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=120.21 Aligned_cols=194 Identities=19% Similarity=0.272 Sum_probs=140.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccc-c
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-E 129 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-~ 129 (303)
..+|++-..|+|++||..+++....+.++...++.++|... .++.+.+|+.||+||+||+|.... .+...+.++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCC
Confidence 56888889999999999999988889999999999999543 678999999999999999985432 2333445555 4
Q ss_pred CeEEEEeCCCCCEEEEEe----CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccc
Q 022074 130 GITFIDSRGDGRYLISNG----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 205 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~----~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (303)
+..+++..-.++.+++|. .|-.|.+||.|...... + .-...|.-
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------~--------------------------~~~eSH~D 166 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL------R--------------------------QLNESHND 166 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchh------h--------------------------hhhhhccC
Confidence 567777765667777765 37899999998643210 0 00111222
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE---EEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeec
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~---~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~ 281 (303)
..+.+++| | .+..+|++|+.||.+.++|++.... +...--|...|..+.|+.++ +.+.+-+...+..+|++
T Consensus 167 DVT~lrFH--P---~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 167 DVTQLRFH--P---SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred cceeEEec--C---CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 23444433 2 2457899999999999999975532 22223467789999999988 35888888999999998
Q ss_pred CCC
Q 022074 282 PGN 284 (303)
Q Consensus 282 ~~~ 284 (303)
.-.
T Consensus 242 e~~ 244 (376)
T KOG1188|consen 242 EDG 244 (376)
T ss_pred cCC
Confidence 643
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=1e-12 Score=117.90 Aligned_cols=230 Identities=32% Similarity=0.522 Sum_probs=163.6
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
....+.+..+.+|+.-..... -....+|...|.+++|+|+++.+++++. |+.+++|++..+.....+..|...|.++.
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKL-IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred eccCCCCccEEEEEecCCCeE-EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEE
Confidence 344455556677766331111 2233789999999999999998888885 99999999998777777888999999999
Q ss_pred EccCCCc-EEEEecCCCeEEEEcCccccCCCccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 89 FGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 89 ~~~~~~~-~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
|++ .+. .+++++.|+++++||.. ...... .+.+|...+ ...+++++.++++++.|+.+++||++....
T Consensus 206 ~~~-~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 206 FSP-DGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred EcC-CcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 984 454 66666999999999864 233343 577787775 447888888899999999999999875321
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
......+|.. .+.. ..++|++..+++++.|+.+.+||..+.....
T Consensus 276 -----------------------------~~~~~~~~~~--~v~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 276 -----------------------------LLRTLSGHSS--SVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred -----------------------------EEEEEecCCc--cEEE----EEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 0000011110 0111 1345566777779889999999998887666
Q ss_pred Eee--cCCCCeEEEEECCCCCeEEEE-eCCCCEEEeecCCCC
Q 022074 247 ALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 285 (303)
Q Consensus 247 ~~~--~h~~~I~~v~~sp~~~~las~-s~Dg~i~~Wd~~~~~ 285 (303)
... .|...+..+.|++++..++.+ ..|+.+.+|+.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 655 788889999994342455555 688999999987553
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=7.2e-15 Score=132.88 Aligned_cols=201 Identities=18% Similarity=0.227 Sum_probs=140.3
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce-------EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 40 FGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
..|..+.|.| |.++|++++.||.|+||.+..+.+ ...+..|...|+.+.|+|--.++|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4688899998 777899999999999999987643 34577899999999998877889999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
+ +......+.||.+.|..++|+++|++++|.+.|+++|+|..|+...... + -.
T Consensus 708 ~----~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~--------E-----g~---------- 760 (1012)
T KOG1445|consen 708 A----NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY--------E-----GK---------- 760 (1012)
T ss_pred h----hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc--------c-----CC----------
Confidence 6 3344567899999999999999999999999999999999876432100 0 00
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC----CCeEEEEECCCCe--EEEEeecCCC-CeEEEEECCCC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGE--QVAALKYHTS-PVRDCSWHPSQ 264 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~----dg~i~iwd~~~~~--~~~~~~~h~~-~I~~v~~sp~~ 264 (303)
..+. .. ..++. |.-+|+++++.|. +..|.+||..+-. .+++..-... .+.-=.+.+|.
T Consensus 761 ---gpvg----tR----gARi~----wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 761 ---GPVG----TR----GARIL----WACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred ---CCcc----Cc----ceeEE----EEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 0000 00 01111 2235677666654 4558888876533 2322211111 11111234454
Q ss_pred C-eEEEEeCCCCEEEeecC
Q 022074 265 P-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ~-~las~s~Dg~i~~Wd~~ 282 (303)
+ +++||-.|..+.++++-
T Consensus 826 ~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ceEEEecCCCceEEEEEec
Confidence 4 68899999999999863
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=1.6e-14 Score=124.13 Aligned_cols=166 Identities=19% Similarity=0.297 Sum_probs=126.8
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC---CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCc
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 151 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~ 151 (303)
.+.+|++.|..+.|+|-+++.++|||+|.+|.+|.+-.... ...+...+.||...|--+.++|. .+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999998899999999999999998742211 12456778899999999999884 577999999999
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
|.+||+..... +.+++ |.... .+..|+.+|.+|+|.+.|
T Consensus 156 v~iWnv~tgea----------------------------------li~l~-hpd~i------~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 156 VSIWNVGTGEA----------------------------------LITLD-HPDMV------YSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred EEEEeccCCce----------------------------------eeecC-CCCeE------EEEEeccCCceeeeeccc
Confidence 99999864321 11111 22111 234577899999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCC-CeEEEEECCCCCeEEEE---eCCCCEEEeecC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSS---SWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~-~I~~v~~sp~~~~las~---s~Dg~i~~Wd~~ 282 (303)
+.|||||.++++.+.+-.+|++ .-..+-|-.++.++-|| ..++.+-+||..
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 9999999999999888777874 44566777888844333 347899999964
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=121.01 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=158.6
Q ss_pred CchhhccccccccccCcCcccccCCCcc-cceEEEEEcCCCCEEEEee----CCCeEEEEECCCCce-EEE-EecccCCe
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKL-SLR-ILAHTSDV 84 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~g~~l~sgs----~Dg~v~lwd~~~~~~-~~~-~~~h~~~v 84 (303)
+++.|.-+.+|++-...+-.-+...+|. -+..|++.+.+++.+++|+ .|..|.+||.+..+. ... ...|.+.|
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 5778888899988554444333445565 5788888888888888886 477899999988664 222 34699999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
++++|+|.++++|+|||-||.|.++|++..+... +......|..+|..+.|..++ ..|.+-+-+.+..+|++......
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999999999999999999999999986332222 222233577789999998776 45888899999999998765432
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEEC---
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL--- 239 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~--- 239 (303)
...+.. ..... ..+... ...+++.++. ..+...++.++. -+...++-.
T Consensus 248 ~~~~~~--~~~~~----------------d~r~~~------~~dY~I~~~~----~~~~~~~~l~g~~~n~~~~~~~~~~ 299 (376)
T KOG1188|consen 248 TWLENP--DVSAD----------------DLRKED------NCDYVINEHS----PGDKDTCALAGTDSNKGTIFPLVDT 299 (376)
T ss_pred hcccCc--cchhh----------------hHHhhh------hhhheeeccc----CCCcceEEEeccccCceeEEEeeec
Confidence 211110 00000 000000 0001111111 113334444443 444444432
Q ss_pred CCCe---EEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 240 VSGE---QVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 240 ~~~~---~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++. .+..+.+ |..-|.++.|.-.+.++.|||+||.+.+|..+..
T Consensus 300 ~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 300 SSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 3333 3445554 6677899999988999999999999999996544
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.2e-13 Score=117.18 Aligned_cols=263 Identities=16% Similarity=0.175 Sum_probs=169.5
Q ss_pred cCchhh-ccccccccccCc--CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC---Ce
Q 022074 11 GSGTME-SLANVTEIHDGL--DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS---DV 84 (303)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~---~v 84 (303)
|--+|- -+|||-+..--. +++.--.-.|+..|+|++|.....++++|+.+++|.+-|+.+.+.+. +..|+. .|
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~-V~~~~~~~~~V 152 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY-VANENNNRGDV 152 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee-eecccCcccce
Confidence 444444 466776654433 34433335788899999999999999999999999999999987664 445654 78
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
..+..+|. ++.|++.+.++.|.+||.+.......+. ++.....+...+-|+|.. .+|++++.-+.+.+||.|+....
T Consensus 153 Y~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 153 YHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eecccCCC-CceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 88888665 7899999999999999987433222222 223344567777788754 56789999999999999874321
Q ss_pred cccccCccceee-ec--eeeeCCCCCccccCC----C-------CC--cceEEe----cccceeeeEEEeeeeeeeCCCe
Q 022074 164 ASCNLGFRSYEW-DY--RWMDYPPQARDLKHP----C-------DQ--SVATYK----GHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 164 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~----~-------~~--~~~~~~----~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
.-....+.++.- .. ....+.+.+..+... | .+ .+..++ |.....++..|.|. +..
T Consensus 231 ~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-----~D~ 305 (609)
T KOG4227|consen 231 VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-----DDY 305 (609)
T ss_pred HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-----cce
Confidence 111111111111 11 111222322211110 0 00 111111 22223333333332 234
Q ss_pred EEEEEeCCCeEEEEECCCC-----------------------eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 224 YIYTGSHDSCVYVYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+++|+.+-.|++|.+... +.+..+++|..-++.|.|+|...+|++.+-...+++|.
T Consensus 306 ~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 5999999999999986321 23456789999999999999999999999999999996
Q ss_pred c
Q 022074 281 F 281 (303)
Q Consensus 281 ~ 281 (303)
.
T Consensus 386 ~ 386 (609)
T KOG4227|consen 386 D 386 (609)
T ss_pred c
Confidence 3
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.58 E-value=2.1e-13 Score=120.42 Aligned_cols=185 Identities=18% Similarity=0.253 Sum_probs=142.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
-+|..-|.++.++-...+||+++..|.|.|-.+.++.....+... .+.|.-+.|++....+|.+++.+|.|.+||....
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 588899999999999999999999999999999998765555433 3456688998877778889999999999997532
Q ss_pred cCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
. ........|..+...+.|+|.. .+|++.|.|+.|.+||.+........ .+
T Consensus 198 s---p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------~y----------- 249 (673)
T KOG4378|consen 198 S---PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------TY----------- 249 (673)
T ss_pred C---cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--------------ee-----------
Confidence 1 1122345688888888898865 45789999999999998743211000 00
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+. ....+|+++|.+|+.|...|.|..||++.- .++..+..|...|++++|-|..
T Consensus 250 --------~~P--------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 250 --------SHP--------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --------cCC--------cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 000 012347889999999999999999999854 4588899999999999998764
No 174
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-13 Score=112.99 Aligned_cols=200 Identities=23% Similarity=0.348 Sum_probs=122.3
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEE
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLW 155 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lW 155 (303)
.+|.+-|.++.| ...|+++++|+.|++|++||.+...-+.........|.++|..+.+.+. |+.+++++.|++++||
T Consensus 10 s~h~DlihdVs~-D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSF-DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeee-cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 468888999999 4679999999999999999965333333444456679999999888653 7889999999999999
Q ss_pred EcccccCCcccccCccceeeece-----------eeeCCCCCccc---cCCCCCcceEEeccccee---ee----EE---
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYR-----------WMDYPPQARDL---KHPCDQSVATYKGHSVLR---TL----IR--- 211 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~----~~--- 211 (303)
.=....... ....|..+ -..|.|.-..+ ....+..+..+..-.... .. +.
T Consensus 89 EE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 89 EEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eeccccccc------ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 642211111 11112111 11222221111 111222333332111000 00 00
Q ss_pred --------EeeeeeeeC---CCeEEEEEeCC-----CeEEEEECCCC----eEEEEeecCCCCeEEEEECCCC-C---eE
Q 022074 212 --------CHFSPVYST---GQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQ-P---ML 267 (303)
Q Consensus 212 --------~~~~~~~s~---~~~~latg~~d-----g~i~iwd~~~~----~~~~~~~~h~~~I~~v~~sp~~-~---~l 267 (303)
-.++..+++ ...+||.|+.+ +.+.||..... ..+.++..|.+||++++|.|.- + +|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 001111121 23567777766 47888876433 2456778999999999999973 3 89
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
|+|+.|| +++|++...+
T Consensus 243 AvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVAR 259 (361)
T ss_pred EEeecCc-EEEEEEeecc
Confidence 9999999 9999998544
No 175
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.2e-13 Score=114.33 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=156.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
+|+|.+|++|+..+|++-+...|.||.....++ ..++..|+..|+.+.|++. .+.+++++.|...++|..... -+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~-~~ 89 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSG-GT 89 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCC-Ce
Confidence 599999999999999999999999999987763 3567789999999999764 678999999999999986322 23
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
.++.-.+..+..+.+++.++|..+.|++||.-+.|.+|=...... | |. .+.++-+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------------W---WV-----sKhikkP----- 144 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------------W---WV-----SKHIKKP----- 144 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------------e---eh-----hhhhCCc-----
Confidence 456667778999999999999999999999999999996543210 0 00 0000000
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC-----C-------------CeEEEEeecCCCCeEEEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-----S-------------GEQVAALKYHTSPVRDCS 259 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~-----~-------------~~~~~~~~~h~~~I~~v~ 259 (303)
...++. +..++|++-+|++|+.|+.+|++..- . |+++.++....+.|..+.
T Consensus 145 -------irStv~----sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 145 -------IRSTVT----SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred -------ccccee----eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 001111 23356778899999999999999741 1 123344444567899999
Q ss_pred ECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 260 WHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 260 ~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
|+|+|+.|+-.+.|..+.+=|..++.
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999999999998876654
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.57 E-value=1.6e-14 Score=130.61 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=117.9
Q ss_pred EcCCCCEEEE--eeCCCeEEEEECCC-CceEEEE---ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc---CC
Q 022074 47 FSTDGRELVA--GSSDDCIYVYDLEA-NKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VK 117 (303)
Q Consensus 47 ~s~~g~~l~s--gs~Dg~v~lwd~~~-~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~---~~ 117 (303)
|+.+.+++++ .+.-|.|-||++.. |++..-. ......|..+.|.|-+.++|+.++.||.|++|.+.... ..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4445666665 45678999999965 3332211 11235789999988888999999999999999875322 22
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
..+.+.+..|.+.|+++.|+|-.
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLA--------------------------------------------------------- 689 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLA--------------------------------------------------------- 689 (1012)
T ss_pred CCcceeeecccceEEEEEecchh---------------------------------------------------------
Confidence 34556666777777776665410
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
...|++++.|-+|++||+.+++....+.+|++.|.+++|||||+.+||.+-||+++
T Consensus 690 ------------------------advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 690 ------------------------ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred ------------------------hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 13477888888899999988888888999999999999999999999999999999
Q ss_pred EeecCC
Q 022074 278 RWEFPG 283 (303)
Q Consensus 278 ~Wd~~~ 283 (303)
+++...
T Consensus 746 Vy~Prs 751 (1012)
T KOG1445|consen 746 VYEPRS 751 (1012)
T ss_pred EeCCCC
Confidence 999764
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.9e-13 Score=117.05 Aligned_cols=199 Identities=18% Similarity=0.270 Sum_probs=135.0
Q ss_pred ccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEE--EEeccc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 39 SFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL--RILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 39 ~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++||.++.|.|+|. .+++++...-.+.||+.+++... ...++. ..+.....++ +++.++..+..|.|.|--..
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhak-- 333 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAK-- 333 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhh--
Confidence 47899999999999 89999999999999999987543 222333 3455666665 46799999999999986543
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
++..+..+. -.+.|..+.|+.+++.|+.++.+|.|.+||++..... . .|. + +
T Consensus 334 --T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~----~-----rf~----D------------~ 385 (514)
T KOG2055|consen 334 --TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL----H-----RFV----D------------D 385 (514)
T ss_pred --hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE----E-----EEe----e------------c
Confidence 333333332 2356788889999999999999999999999864211 0 000 0 0
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC------eEEE----------------------
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG------EQVA---------------------- 246 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~------~~~~---------------------- 246 (303)
..+ +-.+...|.+++|||+|+..|.|-|||..+- ++++
T Consensus 386 G~v--------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 386 GSV--------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred Ccc--------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 000 0001123456777777777777777774321 0000
Q ss_pred -------------------Ee---e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 247 -------------------AL---K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 247 -------------------~~---~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.| . ..-+.|+|++|||.+.+||.|.++|.+.+|.+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00 0 112468999999999999999999999999863
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=3.3e-12 Score=113.74 Aligned_cols=211 Identities=10% Similarity=0.165 Sum_probs=126.5
Q ss_pred ceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCc-eE--EEEecccCCeEEEEEccCCCcEE-EEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK-LS--LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~-~~--~~~~~h~~~v~~l~~~~~~~~~l-~s~s~dg~v~lWd~~~~~ 115 (303)
....+.|+|+|+++++++. ++.|.+|++++.. .. .....+......++++|+ ++.+ ++...++.|.+||+....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCC
Confidence 4567999999999988774 8889999997432 11 111223345667788764 5555 555677999999985311
Q ss_pred CCC-ccceeec-ccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 116 VKG-KPAGVLM-GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 116 ~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
... ....... ........+.+++++++++++.. +++|.+||+......... ...+. ..+...
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~-------~~~~~--~~p~~~------ 224 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC-------VQTLD--MMPADF------ 224 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE-------EEEEe--cCCCcC------
Confidence 000 0000000 11234567889999999877765 999999998632110000 00000 000000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCe-E---EEEeecCCCCeEEEEECCCCCeE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE-Q---VAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~-~---~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
.+. ... ....++|++++++++. .++.|.+|++.+.. . +..... ......++|+|+|++|
T Consensus 225 --------~~~---~~~----~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l 288 (330)
T PRK11028 225 --------SDT---RWA----ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYL 288 (330)
T ss_pred --------CCC---ccc----eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEE
Confidence 000 000 0123678899888885 47899999986432 1 222221 1245689999999988
Q ss_pred EEEeC-CCCEEEeecCC
Q 022074 268 VSSSW-DGDVVRWEFPG 283 (303)
Q Consensus 268 as~s~-Dg~i~~Wd~~~ 283 (303)
+++.. ++++.+|++..
T Consensus 289 ~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 289 IAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEccCCcEEEEEEcC
Confidence 87775 89999999864
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=6e-13 Score=111.94 Aligned_cols=217 Identities=21% Similarity=0.321 Sum_probs=146.4
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE------------EEEecc-cCCeEEEEEc------cCCCcEEEEecC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS------------LRILAH-TSDVNTVCFG------DESGHLIYSGSD 102 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~------------~~~~~h-~~~v~~l~~~------~~~~~~l~s~s~ 102 (303)
...+.|+|||..|++-+.|..+++|+++..... ..+.-. ..-|...+|- .++.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999988643210 111111 2345555662 245678999999
Q ss_pred CCeEEEEcCccccCCCccceeec--cccc---CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLM--GHLE---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~--~h~~---~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+.-|++||.. +++....+. .|.+ +-.++.|+|||++|.+| ..++||+||+.+.-.. |.
T Consensus 132 ~~PIh~wdaf----tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~--c~---------- 194 (406)
T KOG2919|consen 132 DQPIHLWDAF----TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD--CP---------- 194 (406)
T ss_pred cCceeeeecc----ccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC--Cc----------
Confidence 9999999975 333333332 2444 34578999999998877 5699999998432110 00
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~ 256 (303)
......++.....-++ ....|+| +.+.++.|+.-.++-|+.-..+.++..+.+|.+-|+
T Consensus 195 -----------------vy~t~~~~k~gq~gii---sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 195 -----------------VYTTVTKGKFGQKGII---SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred -----------------chhhhhccccccccee---eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 0000000000001111 1223444 456899999999999999989999999999999999
Q ss_pred EEEECCCCCeEEEEeC-CCCEEEeecCCCCccCCCCcccc
Q 022074 257 DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGEAAPPLNKKR 295 (303)
Q Consensus 257 ~v~~sp~~~~las~s~-Dg~i~~Wd~~~~~~~~~~~~~~~ 295 (303)
.+.|.++|+.|.+|+. |-.|..||+...+...=.+.+++
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 9999999998888876 67899999876554444444443
No 180
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=8.9e-14 Score=125.09 Aligned_cols=198 Identities=20% Similarity=0.253 Sum_probs=142.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
|--+|..+.|+..|.+|++...++ .|.|..+..+..+..+..-.+-|-++.|+|.. .+|+.++. ..|++||+..
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~k- 596 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSK- 596 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhH-
Confidence 556899999999999999976543 58899998877666666666788999997654 45555554 5899999742
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+.....-|..+++++.|.-|+.++.|+.+..+|+......
T Consensus 597 ---qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP------------------------------- 642 (733)
T KOG0650|consen 597 ---QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP------------------------------- 642 (733)
T ss_pred ---HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch-------------------------------
Confidence 2223333333455788899999999999999999999998642110
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-------C--eEEEEeecCCCC----eEEEEEC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------G--EQVAALKYHTSP----VRDCSWH 261 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-------~--~~~~~~~~h~~~----I~~v~~s 261 (303)
..++.-|.. ...+.+|++.-.++++|+.||++.|+--.- - ..++.+.+|... |.++.||
T Consensus 643 --yk~lr~H~~------avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 643 --YKTLRLHEK------AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred --hHHhhhhhh------hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 001111110 011223555567899999999999995321 1 346778888765 9999999
Q ss_pred CCCCeEEEEeCCCCEEEee
Q 022074 262 PSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd 280 (303)
|..++|+|++.||+|++|.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 9999999999999999994
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.9e-13 Score=125.48 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=144.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc---CCeEEEEE-ccCCCcEEEEecCCCeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCF-GDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~---~~v~~l~~-~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
|-..+-..+.|+|=...++++.....|++||-+.++....+..+. ..|+.+++ +..+..++++|+.||.||+|+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 333457788999988899998877789999999988766555443 47888887 33456789999999999999743
Q ss_pred ccc-CCCcccee---eccc----ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 113 CLN-VKGKPAGV---LMGH----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 113 ~~~-~~~~~~~~---~~~h----~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
... ...+.+.. +.++ .+.-.-++|.+...+|+++|.-+.|||||..+.........
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----------------
Confidence 111 11111111 1121 12223456777667788888889999999876432211100
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---EEEEeecCCCC--eEEEE
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAALKYHTSP--VRDCS 259 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~h~~~--I~~v~ 259 (303)
.....+..+.+. ...|..++.|..||.+++||.+... .+...+.|+++ |..+.
T Consensus 1206 -------~s~t~vTaLS~~---------------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1206 -------GSSTLVTALSAD---------------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred -------CCCccceeeccc---------------ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 011122222211 1246789999999999999987543 46677889887 99999
Q ss_pred ECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 260 WHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 260 ~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
+.++|- -|++|+.||.|++||+..+
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccC
Confidence 999876 4999999999999999874
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4.7e-14 Score=124.16 Aligned_cols=244 Identities=22% Similarity=0.282 Sum_probs=164.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----------------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL---------------------------------------- 75 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~---------------------------------------- 75 (303)
++|.+-|..+.|+..|..+++||.|..|.+||-..+....
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 6999999999999999999999999999999987654211
Q ss_pred --------EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc---CeEEEEeCCCCC-EE
Q 022074 76 --------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGDGR-YL 143 (303)
Q Consensus 76 --------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~-~l 143 (303)
.+..|.+.|..++.-|..++-|.|++.|+.|.-.|+++........+.. .+.. ....++..|... ++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~-~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE-ADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec-cCCccceeeeeEecCCCCcccc
Confidence 1234566677777766667788888888888888887543332222221 2222 345677777554 79
Q ss_pred EEEeCCCcEEEEEcccccCCcccc-------cCccc-eeeeceeeeCCCCCcccc------------------------C
Q 022074 144 ISNGKDQAIKLWDIRKMSSNASCN-------LGFRS-YEWDYRWMDYPPQARDLK------------------------H 191 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~------------------------~ 191 (303)
++++.|.-+|+||.|+......+. ..... ..-.+..+.|......+. .
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc
Confidence 999999999999998743221111 00000 000000111111100000 0
Q ss_pred CCCCc-ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 192 PCDQS-VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
+..+. ...++||...+++....| |-|...|+++|+.=|.|.||+-.+++.+..+++...=|+|+.=+|--++|||+
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNF---fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNF---FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred chhhccchhhcccccccccceeee---ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 00111 223778877666433332 44667899999999999999999999887787766689999999999999999
Q ss_pred eCCCCEEEeecCC
Q 022074 271 SWDGDVVRWEFPG 283 (303)
Q Consensus 271 s~Dg~i~~Wd~~~ 283 (303)
|-|.-|++|...+
T Consensus 455 Gid~DVKIWTP~~ 467 (559)
T KOG1334|consen 455 GIDHDVKIWTPLT 467 (559)
T ss_pred CCccceeeecCCc
Confidence 9999999999743
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=104.11 Aligned_cols=204 Identities=14% Similarity=0.258 Sum_probs=135.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-------EE-EEeccc-----CCeEEEEEccCCCcEEEEecC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------SL-RILAHT-----SDVNTVCFGDESGHLIYSGSD 102 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-------~~-~~~~h~-----~~v~~l~~~~~~~~~l~s~s~ 102 (303)
.+|+.+|+.+.|.. ..|++|+ ||.|+=|.-+.-.. .. +...|. ..|+++-..|..+..| .++.
T Consensus 59 qahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGG 134 (325)
T ss_pred cccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecC
Confidence 79999999999993 4666665 59999886543221 11 111222 3577777655545455 5558
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
|+.++-||++ .++....+.||++.+.++.......+++||+.||++|+||++..+.......
T Consensus 135 D~~~y~~dlE----~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~-------------- 196 (325)
T KOG0649|consen 135 DGVIYQVDLE----DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP-------------- 196 (325)
T ss_pred CeEEEEEEec----CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc--------------
Confidence 9999999986 5566778999999999998866677899999999999999987544322100
Q ss_pred CCCCccccCCC-CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 183 PPQARDLKHPC-DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
...+.+..+. ..-+. ....+..+|++|+ ...+.+|.++..+....+.- ..++..+.|
T Consensus 197 -yk~~~~lRp~~g~wig------------------ala~~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F- 254 (325)
T KOG0649|consen 197 -YKNPNLLRPDWGKWIG------------------ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDF- 254 (325)
T ss_pred -ccChhhcCcccCceeE------------------EEeccCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeee-
Confidence 0000000000 00000 1123456777765 45699999999888777753 357888998
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....++++++.+-+.-|.+.+.
T Consensus 255 -~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 255 -VDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -ecceEEEeccccceeeeeeccE
Confidence 4456788887778888876543
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4e-13 Score=120.19 Aligned_cols=100 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred Cchhhcccccccc---c--cCcCcccccC-CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----------eEE
Q 022074 12 SGTMESLANVTEI---H--DGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----------LSL 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----------~~~ 75 (303)
+++.++.+.+|.. . .+++.+++.. .||++||.|+.+.++++.+++|+-||+|+.|++.... +..
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 6888999888876 2 2223322222 6999999999999999999999999999999665322 234
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+.+|++.|..++++. ..+.|++++.||+||+|+..
T Consensus 391 ~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ceeccccceeeeeecc-cccceeeecCCceEEeeccC
Confidence 5789999999999964 46789999999999999854
No 185
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.51 E-value=1.4e-12 Score=109.92 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=103.7
Q ss_pred CcccceEEEEEcC-----CCCEEEEeeCCCeEEEEECCCCceEEEEe-----cccCCeEEEEEccC---CCcEEEEecCC
Q 022074 37 GYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDE---SGHLIYSGSDD 103 (303)
Q Consensus 37 ~~~~~v~~l~~s~-----~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-----~h~~~v~~l~~~~~---~~~~l~s~s~d 103 (303)
.|+.+|+.++|++ +-..+++.+.+ .+.||+.........++ .|...-..++|.-+ ...+++.|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 7888999999994 23345555544 58899887654222221 13344445555221 12355555666
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
|-||+.|.. ..+....+.+|..+|+.+.+.|+.
T Consensus 115 GvIrVid~~----~~~~~~~~~ghG~sINeik~~p~~------------------------------------------- 147 (385)
T KOG1034|consen 115 GVIRVIDVV----SGQCSKNYRGHGGSINEIKFHPDR------------------------------------------- 147 (385)
T ss_pred eEEEEEecc----hhhhccceeccCccchhhhcCCCC-------------------------------------------
Confidence 666666643 222334455555555555444422
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe---ecCCCCeEEEEE
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL---KYHTSPVRDCSW 260 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~---~~h~~~I~~v~~ 260 (303)
.+++++|+.|..||+|+++++.++..+ ++|.+.|.+++|
T Consensus 148 --------------------------------------~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 148 --------------------------------------PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred --------------------------------------CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 245666666677777777666666554 589999999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
|++|.+++|+|.|.+|++|+++.
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCCCCeeeccCCcceEEEEecCh
Confidence 99999999999999999999873
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=105.26 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCC---------c-eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEAN---------K-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~---------~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
|++-+++|.++++++|+.+|+|.++.++.- + ......+|++++..++|. +..|++|+ ||.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEeee
Confidence 666789999999999999999999988642 1 223457899999999996 34666776 599998876
Q ss_pred ccccCCCcccee----eccc-----ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 112 RCLNVKGKPAGV----LMGH-----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 112 ~~~~~~~~~~~~----~~~h-----~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
+........... ...| ...|+++...|..+.++.++.|+.+.-||+...+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------------------- 147 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------------------- 147 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---------------------
Confidence 432211110000 0112 2347788888887888888899999999986422
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----------C
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----------T 252 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----------~ 252 (303)
...++.||......+... + ....+++|++||++|+||.++++.+..++.. .
T Consensus 148 -------------i~r~~rGHtDYvH~vv~R-----~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 148 -------------IQREYRGHTDYVHSVVGR-----N-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred -------------EEEEEcCCcceeeeeeec-----c-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 233455554322211110 1 1345899999999999999999988776532 1
Q ss_pred CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.+++- +..+|++|+ .-.+.+|.++.+
T Consensus 209 ~wigala~--~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 209 KWIGALAV--NEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred ceeEEEec--cCceEEecC-CCceeEEeccCC
Confidence 34555554 556888886 468999999865
No 187
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=4.7e-12 Score=103.86 Aligned_cols=67 Identities=16% Similarity=0.408 Sum_probs=48.5
Q ss_pred eCCCeEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCCCcc
Q 022074 219 STGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGNGEA 287 (303)
Q Consensus 219 s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~~~ 287 (303)
||+|++|++|+ ..|.|.+||..+.+.+...+ |. .++.++|||||++|+++.. |+.+++|++.+....
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 33444444443 23668889988888776664 33 4789999999999998875 799999999876433
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=1.6e-11 Score=109.26 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=137.1
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCC-CceEE-EEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL-RILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~-~~~~~-~~~~h~~~v~~l~~~~~ 92 (303)
+..|.+|++.++.+......-.+......++++|++++|++++ .++.|.+|+++. +.+.. ......+....+++++
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~- 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH- 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-
Confidence 4567777775433321111111223466789999999987765 478899999973 43321 1112334567888975
Q ss_pred CCcEEEEec-CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCc
Q 022074 93 SGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 93 ~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+++.+++++ .++.|.+||+............+. +......+.++|++++++ +...++.|.+||+....... .....
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~-~~~~~ 167 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV-AQEPA 167 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc-ccCCC
Confidence 466666655 488999999752111111222222 223456677899998885 45567999999986421100 00000
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCC--Ce--EE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GE--QV 245 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~--~~--~~ 245 (303)
.+....+.. .....|+|++++++++.+ ++.|.+||+.. ++ .+
T Consensus 168 -------------------------~~~~~~g~~--------p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 168 -------------------------EVTTVEGAG--------PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred -------------------------ceecCCCCC--------CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 000000000 012347789999988876 99999999973 32 23
Q ss_pred EEeecC------CCCeEEEEECCCCCeEEEEeC-CCCEEEeecCCC
Q 022074 246 AALKYH------TSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 246 ~~~~~h------~~~I~~v~~sp~~~~las~s~-Dg~i~~Wd~~~~ 284 (303)
..+..+ ......+.|+|++++|+++.. ++.|.+|++...
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 333221 122346899999998888754 789999998543
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=8.4e-13 Score=117.63 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=121.8
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEE----ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-------
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------- 117 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~------- 117 (303)
+.+-.++.|=.-|.|.+.|.........+ .--+..|+|+.|-+.+...|+.+-.+|.+.++|.......
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45667888888888888877653221111 0122579999998877888999999999999975311000
Q ss_pred -----------------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 118 -----------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 118 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
..|...+.--..+++.++|++||.+||+.+.||.+||||...+......
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------- 328 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------- 328 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--------------
Confidence 0111112112346778889999999999999999999997654321111
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
..+ .....+..+||||+|+++||+|.-|.||....++.+..=.+|+.+|..|+|
T Consensus 329 -----------------kSY---------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 329 -----------------KSY---------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred -----------------Hhh---------ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 000 001112336789999999999999999999999999998999999999999
Q ss_pred C
Q 022074 261 H 261 (303)
Q Consensus 261 s 261 (303)
.
T Consensus 383 D 383 (636)
T KOG2394|consen 383 D 383 (636)
T ss_pred c
Confidence 8
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=128.48 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=170.8
Q ss_pred EEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 6 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
|-++-||.+| |..||--.++.... +-.||+..|..++.+.+.-.++++|.|..|++|.+.++..+..+.+|++.|+
T Consensus 203 ~~Iitgsdd~--lvKiwS~et~~~lA--s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavt 278 (1113)
T KOG0644|consen 203 RYIITGSDDR--LVKIWSMETARCLA--SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVT 278 (1113)
T ss_pred ceEeecCccc--eeeeeeccchhhhc--cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccccee
Confidence 4466677665 77888877777663 6699999999999999999999999999999999999998888999999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+++|+|- .+.+.||++++||.+- .....+...+.- -.+-+..+-+-..+..++|++.|+.-+.|.+.......
T Consensus 279 aiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~ 352 (1113)
T KOG0644|consen 279 AIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS 352 (1113)
T ss_pred eeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc
Confidence 9999763 2778899999999871 111111111111 12345566677778889999999999999765421110
Q ss_pred ccccCccceeeeceeeeCCCCCccccCC------CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHP------CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
.. +.+.....+.. .+-+....-... .....-...+|.....+++.|. -+.+...+++.||...|||
T Consensus 353 ~~-lif~t~ssd~~--~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp-----fn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 353 NL-LIFVTRSSDLS--SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP-----FNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred cc-eEEEecccccc--ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC-----CCcHhhhhccCCCceEeee
Confidence 00 00000000000 000000000000 0011112233333333333331 1345667899999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+-.|-+++.+......+-+.+||+||..++....-|.+.+...-
T Consensus 425 i~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 425 IWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 99887766554335678899999999999999999999988754
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=5.2e-13 Score=110.81 Aligned_cols=125 Identities=20% Similarity=0.341 Sum_probs=104.5
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.-|..++.+..|+. +-+++.++|-|-|..|||++++. ...++.+|+..|..++|.....++|+|.+.||+||+||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 36668999999994 67789999999999999999863 356788999999999998766789999999999999998
Q ss_pred ccccC--------------------------------------------CCccceeecccccCeEEEEeCCC-CCEEEEE
Q 022074 112 RCLNV--------------------------------------------KGKPAGVLMGHLEGITFIDSRGD-GRYLISN 146 (303)
Q Consensus 112 ~~~~~--------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 146 (303)
|..+. ...+...+.+|.+.|+.++|.|. ...|+|+
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 74211 12244567789999999999885 5679999
Q ss_pred eCCCcEEEEEcccc
Q 022074 147 GKDQAIKLWDIRKM 160 (303)
Q Consensus 147 ~~D~~v~lWdl~~~ 160 (303)
|.|.++.+||+..+
T Consensus 307 GDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 307 GDDCQALIWDLQQM 320 (364)
T ss_pred CCcceEEEEecccc
Confidence 99999999999754
No 192
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.1e-13 Score=128.10 Aligned_cols=236 Identities=19% Similarity=0.305 Sum_probs=142.5
Q ss_pred EEEEEcCCCC-EEEEee----------CCCeEEEEECCCCceE---EE--EecccCCeEEEEEccCCCc---EEEEecCC
Q 022074 43 FSLKFSTDGR-ELVAGS----------SDDCIYVYDLEANKLS---LR--ILAHTSDVNTVCFGDESGH---LIYSGSDD 103 (303)
Q Consensus 43 ~~l~~s~~g~-~l~sgs----------~Dg~v~lwd~~~~~~~---~~--~~~h~~~v~~l~~~~~~~~---~l~s~s~d 103 (303)
-.++|+|.+. ++++|. .+.++-||.+...... .. ....+..-+.++|.+.... +++.|.+|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 4578898886 455443 3455667765433211 11 1122346688999654333 58888999
Q ss_pred CeEEEEcCccc--cCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccc-----cCccceee
Q 022074 104 NLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCN-----LGFRSYEW 175 (303)
Q Consensus 104 g~v~lWd~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~-----~~~~~~~~ 175 (303)
|.|.+||.... +.....+.....|.+.|..++|++.+. +|++|+.||.|.|||+.+.....+.. .....+.|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997532 222234556677999999999999755 99999999999999998754332221 11122233
Q ss_pred eceeee----CCCCCccc-c-CCCCCcceEEecccceeeeEEEee-eeeeeCC-CeEEEEEeCCC---eEEEEECCCC-e
Q 022074 176 DYRWMD----YPPQARDL-K-HPCDQSVATYKGHSVLRTLIRCHF-SPVYSTG-QKYIYTGSHDS---CVYVYDLVSG-E 243 (303)
Q Consensus 176 ~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~~~latg~~dg---~i~iwd~~~~-~ 243 (303)
...... ..+.++.. . ......+..+..+.. ++++ ...++|+ -..++++++|. .|.+||++.- .
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 311100 00010000 0 000011111111111 1111 1224443 34566666544 5999998754 4
Q ss_pred EEEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeecCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~ 283 (303)
.++++.+|+..|.++.|.+.+ .+|+|++.|+.+..|+...
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 577889999999999999987 7999999999999999765
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.9e-12 Score=123.36 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=142.0
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
.-++|.-+..+|+++|.-..|||||++......-+.. .+..|+++.-....+++++.|-.||.||+||.|.... ...+
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccc
Confidence 5577886666777777788999999988776554432 3446677765445578999999999999999885443 2456
Q ss_pred eeecccccC--eEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 122 GVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 122 ~~~~~h~~~--v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.....|.+. |..+.+.+.|- .|++|+.||.|++||+|.......... ...|++
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~y--------------------- 1303 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEY--------------------- 1303 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eecccc---------------------
Confidence 667778876 88888887653 499999999999999997311110000 000000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-------CCCeEEEEECCCCCeEEEEe
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------TSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-------~~~I~~v~~sp~~~~las~s 271 (303)
|.. -+.+. .+.....+|+|+. +.|+||++. |+.+..++.+ .+.+.+++|||-..+||.|+
T Consensus 1304 ---Gs~--lTal~------VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1304 ---GSA--LTALT------VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ---Ccc--ceeee------eccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 000 01121 2234567899988 999999985 5655555433 35789999999999999999
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.|..+.++....
T Consensus 1371 ~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1371 ADSTVSIYSCEK 1382 (1387)
T ss_pred CCceEEEeecCC
Confidence 999999998643
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.43 E-value=4.3e-12 Score=105.37 Aligned_cols=188 Identities=22% Similarity=0.261 Sum_probs=128.7
Q ss_pred CCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+|+....+-.|+| ||+.+++. .|++++-||+++......+ .+|...|..+-|+|+.-.+|+||+.||.||+||.|
T Consensus 167 ~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 167 AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 56888999999998 78877775 6889999999987655444 36888999999998777889999999999999987
Q ss_pred cccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC--Cccc
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--ARDL 189 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (303)
. +..++..+.+|..-|+++.|+|. +.+++|+|.|..|.+|.............+. ..-..+.. ....
T Consensus 246 ~---tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~-------dese~e~~dseer~ 315 (370)
T KOG1007|consen 246 K---TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED-------DESESEDEDSEERV 315 (370)
T ss_pred C---CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc-------ccccCcchhhHHhc
Confidence 3 45677888899999999999884 5678999999999999865432221111110 00000000 0111
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
+...++.+.+++.|....+. +.++ +.+.-.+|+-+.||++-|=.+
T Consensus 316 kpL~dg~l~tydehEDSVY~--~aWS---sadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYA--LAWS---SADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccceEE--Eeec---cCCCeeEEEeccCceEEeecC
Confidence 11223345555555432222 2222 235567888899999877544
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=106.39 Aligned_cols=237 Identities=17% Similarity=0.199 Sum_probs=146.9
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC------ceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~------~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
|..||.+-|.+|.|+.++++|++|+.|..++||.++.. +.+. .-..|...|.|++|... ...+++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence 55699999999999999999999999999999988542 2221 12235579999999654 5678899999999
Q ss_pred EEEcCccccCCCccceeeccccc---CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc------cccCccceeeec
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS------CNLGFRSYEWDY 177 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~------~~~~~~~~~~~~ 177 (303)
.+-|+.. .+.+-++ .|.+ .|..++.+|-++.|++.+.++.|.+||.|....... ....|.+..
T Consensus 130 I~HDiEt----~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~--- 201 (609)
T KOG4227|consen 130 IKHDIET----KQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE--- 201 (609)
T ss_pred Eeeeccc----ceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee---
Confidence 9999752 2223222 3444 799999999999999999999999999986442111 111222222
Q ss_pred eeeeCCCCCcccc-CCC-CCcceEE------------ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 178 RWMDYPPQARDLK-HPC-DQSVATY------------KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 178 ~~~~~~~~~~~~~-~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
+.|....+. ... ......+ .+...+.....--....|++.|..|.+----..-.+||+.+..
T Consensus 202 ----F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 202 ----FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred ----ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 222222111 100 0001111 1110000000000112356667666665445556677876632
Q ss_pred -EEEEeecCC-------CCeEEEEECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 244 -QVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 244 -~~~~~~~h~-------~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
.+..+. |. ..|.+|+|--|- .++||+.+=.|++|.++...
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 343333 22 357788886554 49999999999999987543
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.42 E-value=2.3e-12 Score=111.22 Aligned_cols=177 Identities=21% Similarity=0.313 Sum_probs=125.2
Q ss_pred CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC-----ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 82 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
.+|..+.|.....+.++||+.|..|++|-+......+ .....+..|..+|+.+.|+++|++|+||+.++.+.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4788888865555599999999999999764222111 22345778999999999999999999999999999997
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEE
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 236 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~i 236 (303)
...-. ...+.. +.+ +..........+.+|... .....+++++.++++|+.|..+++
T Consensus 94 ~~~~~-~~~~d~-----e~~------------~~ke~w~v~k~lr~h~~d------iydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 94 QGDVR-IFDADT-----EAD------------LNKEKWVVKKVLRGHRDD------IYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred ecCcC-Cccccc-----hhh------------hCccceEEEEEecccccc------hhhhhccCCCceeeeeeccceEEE
Confidence 54200 000000 000 000000001111122111 112346789999999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 237 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 237 wd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
||+..|+.+..+..|...+..++|.|-.+++++-+.|...+...+.
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999999999999999877766643
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.5e-10 Score=105.24 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=133.0
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
...+-+.|++. +|.+.... ..+...+.+..|||||+.|+..+. +..+++|++.+++.. .+....+.+....|+
T Consensus 176 ~~~~~l~~~d~-dg~~~~~l--t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~S 251 (429)
T PRK03629 176 QFPYELRVSDY-DGYNQFVV--HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS 251 (429)
T ss_pred CcceeEEEEcC-CCCCCEEe--ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEEC
Confidence 33445555554 34433222 234567899999999999886542 457999999887643 333344455678998
Q ss_pred cCCCcEEE-EecCCC--eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCccc
Q 022074 91 DESGHLIY-SGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 91 ~~~~~~l~-s~s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~ 166 (303)
|+ ++.|+ +.+.+| .|++||+... . ...+..+...+....|+|+|+.|+..+. ++...+|.+......
T Consensus 252 PD-G~~La~~~~~~g~~~I~~~d~~tg----~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--- 322 (429)
T PRK03629 252 PD-GSKLAFALSKTGSLNLYVMDLASG----Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--- 322 (429)
T ss_pred CC-CCEEEEEEcCCCCcEEEEEECCCC----C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---
Confidence 75 55544 545555 5888887522 2 2233334445677889999998876664 456667654321000
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCe
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE 243 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~ 243 (303)
.. .+ +..+. ....+.++|+|++++..+.+ ..|++||+.+++
T Consensus 323 ---~~------------------------~l-t~~~~--------~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 323 ---PQ------------------------RI-TWEGS--------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred ---eE------------------------Ee-ecCCC--------CccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 00 00 00000 01135578899988876543 468999998876
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCC---EEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~---i~~Wd~~~~ 284 (303)
.. .+... .......|||||++|+.++.++. +.++++.+.
T Consensus 367 ~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 367 VQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred eE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 43 33221 23456789999999999988875 667776543
No 198
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.1e-10 Score=107.77 Aligned_cols=216 Identities=14% Similarity=0.090 Sum_probs=132.9
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
.+-+.|++. +|.+.. -...|...+.+.+|+|||+.|+..+. +..|++||+.++... .+..+.+.+....|+|+
T Consensus 181 ~~~l~~~d~-dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 181 IKRLAIMDQ-DGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred ceEEEEECC-CCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 344555554 455442 12467778999999999999888764 468999999888643 45556667778899875
Q ss_pred CCcEEEEecCCCe--EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCC--cEEEEEcccccCCcccc
Q 022074 93 SGHLIYSGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQ--AIKLWDIRKMSSNASCN 167 (303)
Q Consensus 93 ~~~~l~s~s~dg~--v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~--~v~lWdl~~~~~~~~~~ 167 (303)
...++++.+.++. |.+||+... ....+..+........|+|+|+.|+..+ .++ .|.++|+.....
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----- 326 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSG-----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----- 326 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCC-----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----
Confidence 4444557676665 666676421 2333444554556678999999887666 344 455555432100
Q ss_pred cCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeE
Q 022074 168 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQ 244 (303)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~ 244 (303)
..+.... .....+.++|++++|+....+ ..|.+||...+..
T Consensus 327 ------------------------------~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 327 ------------------------------RRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred ------------------------------EEeecCC------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 0000000 001235578899988876543 4688999865543
Q ss_pred EEEeecCCCCeEEEEECCCCCeEEEEeCC------CCEEEeecCC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWD------GDVVRWEFPG 283 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~las~s~D------g~i~~Wd~~~ 283 (303)
..+. ....+.+..|+|||++|+..+.+ ..|.+.++.+
T Consensus 371 -~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 371 -RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred -Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 2332 22357788999999987765543 2466666654
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=8e-11 Score=108.46 Aligned_cols=194 Identities=20% Similarity=0.199 Sum_probs=124.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+......|+|+...++++.+.++...+|...
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 3566789999999999998887643 35999999988653 3444445567889987544445577888887887653
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
. .......+..+........|+|||+.|+..+ .++...+|.+...... .
T Consensus 271 ~---~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~------------------------- 320 (427)
T PRK02889 271 A---DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--A------------------------- 320 (427)
T ss_pred C---CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--e-------------------------
Confidence 2 1122334444444455677999999887554 4577788876421100 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
...++.+. ....+.+||+|++++..+.++ .|++||+.+++.. .+... .......|+||+++|+
T Consensus 321 ----~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 321 ----QRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYIL 386 (427)
T ss_pred ----EEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEE
Confidence 00000110 012356889999988776554 6999999887643 33222 2346789999999877
Q ss_pred EEeCCC
Q 022074 269 SSSWDG 274 (303)
Q Consensus 269 s~s~Dg 274 (303)
.++.++
T Consensus 387 ~~~~~~ 392 (427)
T PRK02889 387 YATQQG 392 (427)
T ss_pred EEEecC
Confidence 766544
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=8.8e-13 Score=115.63 Aligned_cols=197 Identities=18% Similarity=0.282 Sum_probs=145.6
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
+++-+.+.++.+|+.++.|+..|.+-.+|..++++...+. -...|..+.|.+ +.++| .......+++||-. +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~-AVAQK~y~yvYD~~-----G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFF-AVAQKKYVYVYDNN-----G 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHH-HhhhhceEEEecCC-----C
Confidence 4567899999999999999999999999999998776553 335688888864 34444 55566799999943 3
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....++..| ..|..+.|-|--=+|++++.-|-++--|+......++...+... +
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~------------------------~- 254 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR------------------------T- 254 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc------------------------c-
Confidence 334444433 34666777775556778888888888888765444332221100 0
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.++. -+|-+-.+-+|...|+|.+|.....+.+..+-.|.++|.++++.++|+++||++.|..+++
T Consensus 255 ---------~vm~------qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 255 ---------DVMK------QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred ---------chhh------cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence 0000 1234566788999999999999998887777789999999999999999999999999999
Q ss_pred eecCCC
Q 022074 279 WEFPGN 284 (303)
Q Consensus 279 Wd~~~~ 284 (303)
||+..-
T Consensus 320 WDlR~~ 325 (545)
T KOG1272|consen 320 WDLRNF 325 (545)
T ss_pred eeeccc
Confidence 998754
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=2.1e-11 Score=108.80 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----EEecccCCeEEEEEcc----CCCcEEEEecCCCeEEEEcCcc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGD----ESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~----~~~~h~~~v~~l~~~~----~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
+....++..|++|+--- ...+++|+.+.+.... +..-.....+|-.|+. +.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44445555677665433 3358889887543221 1111111223333421 2344566788888998887531
Q ss_pred ccCCCccceeec--c--cccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 114 LNVKGKPAGVLM--G--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 114 ~~~~~~~~~~~~--~--h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
....+.+. . ....|+++.|-+ +..+++.+-.+|.+.++|...... .+ ...+ ..
T Consensus 205 ----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-~t------~p~~-----------~~ 262 (636)
T KOG2394|consen 205 ----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-AT------APSY-----------QA 262 (636)
T ss_pred ----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-CC------CCcc-----------cc
Confidence 11111111 1 235688888876 456788888999999999732110 00 0000 00
Q ss_pred ccCCCCCcceEEecccceeeeEEE------eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRC------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+.....-.+.+.+.+.....+.++ ...-.|++||++||+.++||.+||+|..+.+++..++..-+...||+|||
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 000000001111111100111111 12234889999999999999999999999988888877778899999999
Q ss_pred CCCeEEEEeCCCCEEEeecCC
Q 022074 263 SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~ 283 (303)
||+++++|++|-.+.+|.+..
T Consensus 343 DGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred CccEEEecCCcceEEEEEecc
Confidence 999999999999999999753
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.3e-10 Score=107.35 Aligned_cols=218 Identities=19% Similarity=0.179 Sum_probs=133.0
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
.+-+.|++. +|.+... ...|..++.+..|+|||+.|+..+.+ ..|++||+.++... .+....+......|+|+
T Consensus 183 ~~~l~i~D~-~g~~~~~--lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 183 RYALQVADS-DGYNPQT--ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPD 258 (433)
T ss_pred eEEEEEECC-CCCCceE--eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCC
Confidence 344556654 4544322 23456679999999999999887743 46999999887643 34444445567889875
Q ss_pred CCcEEEEecCCC--eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccC
Q 022074 93 SGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 93 ~~~~l~s~s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
...++++.+.+| .|++||+... ....+..+.......+|+++|++|+..+ .++...+|.+...... .
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g-----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~--- 328 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSR-----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--A--- 328 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCC-----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--e---
Confidence 444555666655 5888887522 1233444444455678999999887665 4555455543211000 0
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEE
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVA 246 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~ 246 (303)
...+..+. ....+.+||+|++++..+.++ .|++||+.+++..
T Consensus 329 --------------------------~~lt~~g~--------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~- 373 (433)
T PRK04922 329 --------------------------ERLTFQGN--------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR- 373 (433)
T ss_pred --------------------------EEeecCCC--------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence 00000010 012356889999988765433 6999999887654
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCC---CCEEEeecCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPG 283 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~D---g~i~~Wd~~~ 283 (303)
.+. +........|+|||++|+..+.+ ..|.+++..+
T Consensus 374 ~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 32345677999999987766653 3577777654
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=8.3e-11 Score=101.38 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=139.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCC--CeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~lWd 110 (303)
.+.+.+|..+... | .+|++|-.+|.+++|..+.+.. ......-..++..+.-.+.....+++|++. ..+++||
T Consensus 102 ~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 3444556555554 3 3688888999999998884431 111223336788888777777888899998 8999999
Q ss_pred CccccCCCccceee---cccccCe--EEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 111 RRCLNVKGKPAGVL---MGHLEGI--TFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 111 ~~~~~~~~~~~~~~---~~h~~~v--~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
+....+........ .+-.-+| +.+.|-+. ...|+++..-+.+|+||.+....... .+++.
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~--------~fd~~----- 246 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA--------QFDFL----- 246 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee--------Eeccc-----
Confidence 85221111101000 0111122 23445554 56799999999999999985321110 00000
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCeEEEEECC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHP 262 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp 262 (303)
...+. +...-|++.++++|..-|.+..+|.+.++.+.. +++-.+.|.++.-+|
T Consensus 247 ----------E~~is----------------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 247 ----------ENPIS----------------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP 300 (412)
T ss_pred ----------cCcce----------------eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC
Confidence 00000 001235788999999999999999999998776 888899999999999
Q ss_pred CCCeEEEEeCCCCEEEeecCC
Q 022074 263 SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++++||++|-|+.++++|.+.
T Consensus 301 ~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 301 THPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCceEEeeccceeEEEeeccc
Confidence 999999999999999999876
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.37 E-value=6.6e-11 Score=110.05 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=158.8
Q ss_pred EEEccCchhhccccccccccCcC--cc--cccCCCcccceEEEEEcCCCCE--EEEeeCCCeEEEEECCCCceE-----E
Q 022074 7 IVDVGSGTMESLANVTEIHDGLD--FS--AADDGGYSFGIFSLKFSTDGRE--LVAGSSDDCIYVYDLEANKLS-----L 75 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~v~~l~~s~~g~~--l~sgs~Dg~v~lwd~~~~~~~-----~ 75 (303)
|-.+-.|.-..-+-+|+.--|.. .+ -.-...|..++..+.|..+..- ++++|.||.|..|+++.-... .
T Consensus 255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 33333455566778888765554 22 2233789999999999975444 999999999999987654321 1
Q ss_pred EEecc-------cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC----ccceeecccccCeEEEEeCCCCCEEE
Q 022074 76 RILAH-------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLI 144 (303)
Q Consensus 76 ~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~ 144 (303)
....| ..+++++.|.+.+.+.|+.|+.+|.|.-=+........ +....+..|.+.|.++.++|=...++
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 11111 13678899977778899999999999763221111111 22334566888999999988766655
Q ss_pred EEeCCCcEEEEEcccc-cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 145 SNGKDQAIKLWDIRKM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
..+.|-+|+||..... .+.. .+..+. ..+....|+|. ...
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~----------------------------------~~~~~~--~~v~~vaWSpt---rpa 455 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLL----------------------------------SLDSSP--DYVTDVAWSPT---RPA 455 (555)
T ss_pred eeeccceeEeccccCCCCcch----------------------------------hhhhcc--ceeeeeEEcCc---Cce
Confidence 4444999999976521 1100 000000 00122334432 235
Q ss_pred EEEEEeCCCeEEEEECCCC--eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 224 YIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~--~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|+++..||.|.+||+... +++...+.+....+.+.|++.|++|+.|+..|+++++++..+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 7899999999999999654 345555566677889999999999999999999999999643
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.36 E-value=1e-11 Score=110.76 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=125.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|..++.|-.|+|||.-|++++.||.|++|.- +|-+...+......|.|++|.|++.+.+++.+..-.|+- +.
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp--L~--- 174 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP--LA--- 174 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee--cc---
Confidence 589999999999999999999999999999965 333333344556789999998887888887776444432 21
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.+.+ +-....|.+-|.+++|++..+++++||.|-..++||--......+
T Consensus 175 ~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S------------------------------ 223 (737)
T KOG1524|consen 175 ANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS------------------------------ 223 (737)
T ss_pred cccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC------------------------------
Confidence 2222 334567888899999999999999999999999999532111100
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..|...++ +..|.|+ +.++.++. .++| --+...+.|..++||+||.+++.|...|.
T Consensus 224 -----~~~ey~IT------Sva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 224 -----AAEEYAIT------SVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred -----Chhcccee------eeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 00111111 2235566 44444432 2233 11344578999999999999999998887
Q ss_pred EEE
Q 022074 276 VVR 278 (303)
Q Consensus 276 i~~ 278 (303)
+.+
T Consensus 280 v~~ 282 (737)
T KOG1524|consen 280 LIV 282 (737)
T ss_pred EEE
Confidence 764
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=5.9e-10 Score=93.92 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCe--EEEEEccCCCcEEEEecCC------CeEEEEcCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD------NLCKVWDRR 112 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~d------g~v~lWd~~ 112 (303)
...+++|+-|..-+++|..+| .+||+.+.-++......+.++. ..+-|- ..-+.+.|+.+ ..|.+||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD- 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD- 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence 366799999999999998888 9999887644322222222221 111221 12233344433 36889992
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc-cc---CCcccccCccceeeeceeeeCCCC--C
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MS---SNASCNLGFRSYEWDYRWMDYPPQ--A 186 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~--~ 186 (303)
...+++..+ .....|.++.+.++ .|+.. .++.|.+|.... ++ .......+ .. .+.+.+. .
T Consensus 83 ---~k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP-kG------lC~~~~~~~k 148 (346)
T KOG2111|consen 83 ---LKERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP-KG------LCSLCPTSNK 148 (346)
T ss_pred ---ccCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC-Cc------eEeecCCCCc
Confidence 223333333 35667888887665 45544 358899997542 11 10000000 00 0111110 0
Q ss_pred ccccCCCCC--cc-------------eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEee-
Q 022074 187 RDLKHPCDQ--SV-------------ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK- 249 (303)
Q Consensus 187 ~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~- 249 (303)
..+..|... .+ .....|...+.+ ...+-+|..+||+|+.|+ |||||..+|+++.++.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac------v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC------VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE------EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 111111100 00 112222222211 124567999999999998 8999999999998885
Q ss_pred -cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 -~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.....|.+++|||+..+||.+|+.|+++++.+...
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 33468999999999999999999999999998754
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.35 E-value=2e-11 Score=108.99 Aligned_cols=219 Identities=16% Similarity=0.244 Sum_probs=136.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEE-ECCCCceEEEEecccCCeEEEEE----c---cCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVY-DLEANKLSLRILAHTSDVNTVCF----G---DESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lw-d~~~~~~~~~~~~h~~~v~~l~~----~---~~~~~~l~s~s~dg~v~ 107 (303)
+.|.--|.|+.|+.+...+.+++ |..+.+| |+.+.. .....-....+....+ + ....+.|+.++.||.+.
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cccceeEEeecccccceEEEecc-CceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 46666788999998887666655 5555555 444332 2111111122221111 0 11345788899999998
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC--CcccccCccceeeeceeeeCCCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS--NASCNLGFRSYEWDYRWMDYPPQ 185 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 185 (303)
+-+. .++.......|.+++.+-.|+++|.-|+|+|.||.|++|.-..+.. ..+.....++..| .|+
T Consensus 89 il~k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W-------~p~ 156 (737)
T KOG1524|consen 89 ILNK-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW-------APN 156 (737)
T ss_pred Eecc-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE-------CCC
Confidence 8763 3455566778999999999999999999999999999997443211 1111122233333 333
Q ss_pred CccccCCC-----------CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 022074 186 ARDLKHPC-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254 (303)
Q Consensus 186 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~ 254 (303)
...+..+. ..++..+..|..+. + +..+++...++++||+|=..++||. .|..+.....|+.|
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGii--L----~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWRAHDGLV--L----SLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEeccCcEE--E----EeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 22221111 11223344444322 2 2335667889999999999999997 57778888899999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEE
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
|++++|+|+ ..++-+|. .+++
T Consensus 230 ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred eeeeeeccc-cceeeeee-eeee
Confidence 999999999 55665654 3555
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=8.6e-10 Score=103.71 Aligned_cols=144 Identities=24% Similarity=0.250 Sum_probs=104.4
Q ss_pred EEEccCchhhc--------cccccc--cccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC---Cce
Q 022074 7 IVDVGSGTMES--------LANVTE--IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKL 73 (303)
Q Consensus 7 ~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~---~~~ 73 (303)
+++.++|.+-+ .+.|.. .+++..- ..--|...+.+.++||+++++++|..||.|.+|.--. ...
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 56667766653 334444 2222222 2246888899999999999999999999999995533 122
Q ss_pred -EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 74 -SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 74 -~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
...+.=|...|+++.|++ ++.+|+||+..|.+.+|-+... + ..-+..-...|..+.++||+.+.+..-.|.+|
T Consensus 243 t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~----~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETG----K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cceEEEecccccceeEEec-CCceEeecccceEEEEEeecCC----C-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 233445778999999975 5789999999999999987522 2 22233335678999999999999888899999
Q ss_pred EEEEccc
Q 022074 153 KLWDIRK 159 (303)
Q Consensus 153 ~lWdl~~ 159 (303)
.+-....
T Consensus 317 ~li~~~d 323 (792)
T KOG1963|consen 317 HLIKASD 323 (792)
T ss_pred EEEeccc
Confidence 9987643
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.6e-09 Score=92.89 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=131.8
Q ss_pred ceEEEEEcCCCCEEEEeeCC--CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~D--g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
.|.-+-|+.. .+|..+.+ +.+++++.+.+..++.+.- ...|-++..+ .++|+.+=++ .|++||++.-..-
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklL- 119 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLL- 119 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEc---cceEEEEEcc-cEEEEecccceee-
Confidence 4555666643 34443333 3588888888877665432 2357777775 3566666555 4999998743211
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
..+.....+..++.++++++++.|++--+ .-|.|.+||+-....
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~---------------------------------- 165 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP---------------------------------- 165 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee----------------------------------
Confidence 11212223556688888888888887432 368999999754322
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEeecC--CCCeEEEEECCCCCeEEEEeCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~h--~~~I~~v~~sp~~~~las~s~D 273 (303)
+..+..|..... ..+|+++|.+||||++.|+ |||+.+.+|+++++|.-- ...|.+++|||+.++|++.|..
T Consensus 166 v~~I~aH~~~lA------alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 166 VNTINAHKGPLA------ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eeEEEecCCcee------EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 112222221111 2358899999999999997 899999999999988522 3468899999999999999999
Q ss_pred CCEEEeecCC
Q 022074 274 GDVVRWEFPG 283 (303)
Q Consensus 274 g~i~~Wd~~~ 283 (303)
+++++|.+..
T Consensus 240 eTVHiFKL~~ 249 (391)
T KOG2110|consen 240 ETVHIFKLEK 249 (391)
T ss_pred CeEEEEEecc
Confidence 9999999864
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=111.33 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=141.6
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE---EEEE-ccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN---TVCF-GDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~---~l~~-~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|....+.-+.+.++..+.++.+.+||...+....++. +...+. ++-+ ...+.-++++|+--+.+.+|+.. .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~---~ 164 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH---E 164 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---c
Confidence 34445556667788889999999999999887654433 333222 1112 12334578899999999999975 2
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
...+. .+.||.+.+..+.++.+|+++++.|.|+++|+|++...+...
T Consensus 165 dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------- 211 (967)
T KOG0974|consen 165 DNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------------- 211 (967)
T ss_pred cCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------------
Confidence 22333 678999999999999999999999999999999987543211
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
...-||.... ..+. |.++ .++|+++|=++++|+. +++.+..+++|. .-|+.++.+++...++|++.|+.
T Consensus 212 -~~~fgHsaRv--w~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 212 -CTGFGHSARV--WACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred -ccccccccee--EEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 0111122111 1222 3344 7999999999999976 456666888886 57999999999999999999999
Q ss_pred EEEeecCC
Q 022074 276 VVRWEFPG 283 (303)
Q Consensus 276 i~~Wd~~~ 283 (303)
+++|+..+
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999653
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=8.5e-11 Score=108.37 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=122.4
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEE--ECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
-+.+|++-+|....-....||. .+++|+|||+.|+.++ .+|.+.|| |+.++.. .++..+...+....|+|+ +
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpD-G 303 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPD-G 303 (429)
T ss_pred EEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCC-C
Confidence 3455665444321111123443 3689999999888765 67765555 6666653 456666667788999865 5
Q ss_pred cE-EEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 95 HL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 95 ~~-l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+. ++++..++...+|+.... ......+ ++.. ....++|+|++|+..+.++ +.+||+......
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---------- 366 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---------- 366 (429)
T ss_pred CEEEEEECCCCCceEEEEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE----------
Confidence 54 555567888899976421 1112222 3333 3467899999998887765 455887532110
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC--CCCeEEEEeecC
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYH 251 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~--~~~~~~~~~~~h 251 (303)
.+.... ....+.|+|++++|+.++.++.+.+|++ .+|+....+..|
T Consensus 367 -------------------------~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 367 -------------------------VLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred -------------------------EecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 000000 0023568899999999999998888875 357777888888
Q ss_pred CCCeEEEEECCC
Q 022074 252 TSPVRDCSWHPS 263 (303)
Q Consensus 252 ~~~I~~v~~sp~ 263 (303)
.+.+.+.+|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 889999999984
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3e-10 Score=97.23 Aligned_cols=192 Identities=14% Similarity=0.239 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
+..++|++-=..++++..|.+||+||-... ....+.. -...|.+++|-|-..+.|+.|.. +-|.+|.........++
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN 178 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc
Confidence 778899986666888999999999988773 3333332 23589999998777777777775 46889976422111121
Q ss_pred --------ceee--cccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 121 --------AGVL--MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 121 --------~~~~--~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
...+ .|| ..|+++.+.+||..+++++ .|..|.|||........-...
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--------------------- 236 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--------------------- 236 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------------
Confidence 1112 233 5699999999999999988 478999999864321100000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCe-E
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM-L 267 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~-l 267 (303)
...| .....+|||+.+|.++.-|+..++|+..+. ....-. .-.+.|....|+|+|++ |
T Consensus 237 ---------glgg----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 237 ---------GLGG----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred ---------CCCc----------eeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEE
Confidence 0000 012347899999999999999999965433 233322 23358999999999986 4
Q ss_pred EEEeCCCCEE
Q 022074 268 VSSSWDGDVV 277 (303)
Q Consensus 268 as~s~Dg~i~ 277 (303)
.+.+..-.+.
T Consensus 297 f~~sgsp~ly 306 (445)
T KOG2139|consen 297 FACSGSPRLY 306 (445)
T ss_pred EEEcCCceEE
Confidence 4554444443
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=3.6e-09 Score=90.83 Aligned_cols=202 Identities=17% Similarity=0.315 Sum_probs=135.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---cccCCeEEEEEccCCCcEEE--EecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIY--SGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~lWd~ 111 (303)
-+--+|.++.++. ++|+++-.+. |+|||+++-++..++. .+..++.++.+++. +.+++ .....|.|.+||+
T Consensus 85 ~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 85 FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEc
Confidence 3445788888875 4677776665 9999999988776554 34456777777543 33544 2334789999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCc-EEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~-v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
. +.++...+..|.+++-+++|+++|.+|||++.-|+ ||++.+.....
T Consensus 161 ~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k---------------------------- 208 (391)
T KOG2110|consen 161 I----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK---------------------------- 208 (391)
T ss_pred c----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----------------------------
Confidence 4 44566777889999999999999999999997665 57887643211
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---------------------------
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------------------------- 243 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--------------------------- 243 (303)
+..+.... ......+..|++++++|++.|..++|+++.++...
T Consensus 209 ------l~eFRRG~----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 209 ------LYEFRRGT----YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred ------eeeeeCCc----eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence 11111111 01122456789999999999999999999875421
Q ss_pred EE----------EEeecCCCCe-EEEEECC--CCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QV----------AALKYHTSPV-RDCSWHP--SQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~----------~~~~~h~~~I-~~v~~sp--~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+ ...+...... ..+.+.+ ..+.+..++.||.+..+.++..
T Consensus 279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00 0001111111 3444553 5678889999999999998764
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=1.4e-10 Score=108.95 Aligned_cols=246 Identities=17% Similarity=0.222 Sum_probs=135.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCC--cEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~lWd~~~ 113 (303)
+|.+.....-.|++|+++++... +.+|.||...++.....+..|...+..+.+.+... .++.+++.||+|++||.+.
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 45555566677999999888765 45799999999988888889999999998866554 5677999999999999753
Q ss_pred ccCCCccceeecccccCeEEEEeCC---CCCEEEEEeC-C------------CcEEEEEcccccCCcccccCccceeeec
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGK-D------------QAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~-D------------~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
. ...+++..+ ..+..+.+.+ +-...+..+. | ++++-+.+.+.... ...+..-.-..
T Consensus 92 ~----~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~---~~d~~~~~~~~ 163 (792)
T KOG1963|consen 92 G----ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA---KGDFLKEHQEP 163 (792)
T ss_pred c----EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecccc---chhhhhhhcCC
Confidence 2 223322211 1111111100 0001111111 1 11111111110000 00000000000
Q ss_pred eeeeCCCCC--ccccCCCCCcceEEeccc-----ceeeeEEEe----eeeeeeCCCeEEEEEeCCCeEEEEECCC--Ce-
Q 022074 178 RWMDYPPQA--RDLKHPCDQSVATYKGHS-----VLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVS--GE- 243 (303)
Q Consensus 178 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~s~~~~~latg~~dg~i~iwd~~~--~~- 243 (303)
+.+.+.+.+ ..+.+.| .+..+.-+. .......-| ....+||.++++|+|..||.|.+|.--. .+
T Consensus 164 ~~I~~~~~ge~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC--KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEEee--eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 000000000 0001111 011110000 000000001 1234789999999999999999996432 22
Q ss_pred -EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC-CccCCCCc
Q 022074 244 -QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN-GEAAPPLN 292 (303)
Q Consensus 244 -~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~-~~~~~~~~ 292 (303)
....+.-|..+|++++||+||.+|.|||.+|.+.+|....+ +.-.|++.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg 292 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG 292 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccC
Confidence 23456789999999999999999999999999999998765 33355554
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.27 E-value=1.8e-10 Score=105.39 Aligned_cols=189 Identities=16% Similarity=0.331 Sum_probs=125.8
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
.|..++|.|+ +..|+.+.. ..+.+||.. .+.....+.+|.+.|.+++++.+|+.+++|+.|+.|.+|.-... -
T Consensus 14 ci~d~afkPD-GsqL~lAAg-~rlliyD~n----dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G 86 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-SRLLVYDTS----DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-G 86 (1081)
T ss_pred chheeEECCC-CceEEEecC-CEEEEEeCC----CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-c
Confidence 7889999765 555544443 378899975 45667788999999999999999999999999999999975421 1
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc-c---eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-V---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
...+ +..-.+..+.+.|..+.+..+....-.-+...+ . .+...++..+ .+..||++++.|-.+|+|.+-+
T Consensus 87 ~LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~C-sWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICC-SWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEe-eecCCCcEEEEeccCceEEeec
Confidence 1111 112223445565655555443322111111100 0 0111222211 2557899999999999999986
Q ss_pred CCCCeEEEEe---ecCCCCeEEEEECCCC-----CeEEEEeCCCCEEEeecCCCC
Q 022074 239 LVSGEQVAAL---KYHTSPVRDCSWHPSQ-----PMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 239 ~~~~~~~~~~---~~h~~~I~~v~~sp~~-----~~las~s~Dg~i~~Wd~~~~~ 285 (303)
. ++++-..+ .+...||++++|+|.. ..++..++..++.++.+.+..
T Consensus 161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 4 45543333 3577899999999963 389999999999999987653
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.5e-10 Score=103.74 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=138.1
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCc----------eEEEEe
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK----------LSLRIL 78 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~----------~~~~~~ 78 (303)
-|||=|.-+.||+-..-+ .--...+||...|+++.|-| +.+.+++|..|..|+|||+...+ ...-+.
T Consensus 66 ~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ 144 (758)
T KOG1310|consen 66 ASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS 144 (758)
T ss_pred eecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh
Confidence 367778888999987433 33456699999999999998 46689999999999999998522 112244
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce-------eecccccCeEEEEeCCCC-CEEEEEeCCC
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQ 150 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~D~ 150 (303)
-|...|..++..|..++.|.++++||+++-+|+|... ...+.. .+....-...++.++|.. .+|+.|+.|-
T Consensus 145 cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp 223 (758)
T KOG1310|consen 145 CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP 223 (758)
T ss_pred hhhhhhhheecCCCCCceEEEecCCcceeeecccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCc
Confidence 5888888888877777999999999999999998421 111111 111112235577888754 6789999999
Q ss_pred cEEEEEcccccCCc-ccccCccceeeeceeeeCCCCCccccCCCCCcceEEe-cc-----cceeeeEEEeeeeeeeCCCe
Q 022074 151 AIKLWDIRKMSSNA-SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GH-----SVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 151 ~v~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~s~~~~ 223 (303)
-.|+||.|+..... +... +..+|.. ..+++.-+. +| ........|..-..|+|+|.
T Consensus 224 farLYD~Rr~lks~~s~~~-----------~~~~pp~------~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGt 286 (758)
T KOG1310|consen 224 FARLYDRRRVLKSFRSDGT-----------MNTCPPK------DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGT 286 (758)
T ss_pred hhhhhhhhhhccCCCCCcc-----------ccCCCCc------ccchhheecCccccCcccccccceeeeEEEEECCCCc
Confidence 99999976533211 1000 0011100 000111110 11 01112233333445889988
Q ss_pred EEEEEeCCCeEEEEECCCCeEE
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~ 245 (303)
.|+..-....|+++|+..++..
T Consensus 287 ElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 287 ELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEEeeCCeEEEEEeecCCCCc
Confidence 7777666678999999877654
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.24 E-value=1.1e-09 Score=92.43 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=132.4
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.-|...|.+|+|+|..+.|++|+.|...+||....+.. ...+..++...+++.|+| +.+.|++||.-..|.+|=.+
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYE 130 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEe
Confidence 45667999999999999999999999999999954432 244678999999999976 57899999999999888543
Q ss_pred cccCCC---ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 113 CLNVKG---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 113 ~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
..+ .. +.++ .-+...|+++++++++-+|+.|+.|+.+|++..--. .++. +. .-+|-...+
T Consensus 131 ~EN-dWWVsKhik--kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK-----------~Vde--kp-ap~pWgsk~ 193 (361)
T KOG1523|consen 131 QEN-DWWVSKHIK--KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-----------GVDE--KP-APTPWGSKM 193 (361)
T ss_pred ccc-ceehhhhhC--CccccceeeeeccCCcceecccccCcceeEEEEeee-----------cccc--CC-CCCCCccCC
Confidence 211 11 1111 125678999999999999999999999999963110 0000 00 000001111
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp 262 (303)
.. .+.+..+.... .......|+++|..|+=.+.|..+.+=|..... .+..+..-.-|..++.|-.
T Consensus 194 PF--G~lm~E~~~~g------gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 194 PF--GQLMSEASSSG------GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred cH--HHHHHhhccCC------CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 00 11111111000 111223478889999999999999999987654 3444444447888888844
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=4.6e-10 Score=101.18 Aligned_cols=200 Identities=18% Similarity=0.317 Sum_probs=137.7
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc--ce
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AG 122 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~--~~ 122 (303)
+.++.-.-.|++++....|+-++++.|+....+....++++++..++. ..+|++|+.+|.|-.||.|+..-.+.. ..
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeeccc
Confidence 455532333555555556999999999988777777789999999754 558889999999999998743211110 00
Q ss_pred eecccc-----cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 123 VLMGHL-----EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 123 ~~~~h~-----~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
.+..|. ..|+++.|+.+|-.++.|..+|.+.|||||...+.....++.
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~--------------------------- 270 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY--------------------------- 270 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC---------------------------
Confidence 111232 349999999999999999999999999999755432222111
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
...+....|.+. .++..+++. ....++|||-.+|+....++ .+..++++++-|++.++++|-++..+.
T Consensus 271 --------e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 271 --------ELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred --------ccceeeeccccc--CCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcce
Confidence 001111122211 223344443 45679999999999887776 445699999999999999999999998
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
-+-++..
T Consensus 339 ~yyiP~L 345 (703)
T KOG2321|consen 339 TYYIPSL 345 (703)
T ss_pred eEEcccc
Confidence 8877654
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-09 Score=104.63 Aligned_cols=209 Identities=18% Similarity=0.223 Sum_probs=134.9
Q ss_pred CcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCC--c-----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 37 GYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN--K-----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 37 ~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~--~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
=|+..|..++.++. +.++++||.||+|++|++..- . ...++......+.++... .+++.++.++.||.|++
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEE
Confidence 47778888888865 489999999999999988541 1 112333345677777774 46789999999999999
Q ss_pred EcCccccCCC---ccceeeccccc-CeEEE-EeCC-CC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 109 WDRRCLNVKG---KPAGVLMGHLE-GITFI-DSRG-DG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 109 Wd~~~~~~~~---~~~~~~~~h~~-~v~~~-~~~~-~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
.++...+... ...+....+.+ .+..+ ++.. .+ ..++-+..-+.+-.||+|........+...
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~----------- 1193 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL----------- 1193 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-----------
Confidence 9876432211 11112222332 23332 2322 22 367788888999999998753221111100
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSW 260 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~~~I~~v~~ 260 (303)
.|... .+.+.++.+.++++|...|.+.+||++=+.++...+ .+..+|+.+..
T Consensus 1194 --------------------~hG~v-------TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1194 --------------------RHGLV-------TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred --------------------cccce-------eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEe
Confidence 00100 122345678899999999999999999887776654 34578888887
Q ss_pred CCCCC---eEE-EEe-CCCCEEEeecCCC
Q 022074 261 HPSQP---MLV-SSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~---~la-s~s-~Dg~i~~Wd~~~~ 284 (303)
+|.-+ ..+ +++ ..+.+.+|++...
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccC
Confidence 77644 444 444 5889999997543
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=4.3e-09 Score=96.69 Aligned_cols=190 Identities=20% Similarity=0.146 Sum_probs=117.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC--eEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~lWd~ 111 (303)
.+...+.+..|+|||++|+..+.+ ..|++||+.+++.. .+..+.+.+...+|+|+...++++.+.++ .|++||+
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 455578899999999999887654 47999999988643 34445566677889765333445655555 5778886
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCc--EEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~--v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
... ....+..+........|+++++.|+..+. ++. |.++|+.....
T Consensus 266 ~~~-----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------------------------- 314 (417)
T TIGR02800 266 DGK-----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------------------------- 314 (417)
T ss_pred CCC-----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------------------
Confidence 421 12233334333445578899988876553 443 44455432100
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
..+..+. .....+.++|++++++..+.++ .|.+||+.++.. ..+... .......|+||++
T Consensus 315 ---------~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 315 ---------RRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred ---------EEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCC
Confidence 0000000 0112345788999988888776 899999987654 233222 2345668999999
Q ss_pred eEEEEeCCCC
Q 022074 266 MLVSSSWDGD 275 (303)
Q Consensus 266 ~las~s~Dg~ 275 (303)
+|+.++.++.
T Consensus 378 ~l~~~~~~~~ 387 (417)
T TIGR02800 378 MILYATTRGG 387 (417)
T ss_pred EEEEEEeCCC
Confidence 8877777653
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.2e-10 Score=111.08 Aligned_cols=131 Identities=26% Similarity=0.353 Sum_probs=107.4
Q ss_pred ccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEE
Q 022074 19 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l 97 (303)
+=||.-. +++. +.-..||+..|+++.|+.||.++++.|.|.++|+|+++++.... ...+|...|..+++.+ + .+
T Consensus 157 iivW~~~-~dn~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i 231 (967)
T KOG0974|consen 157 IIVWKPH-EDNK-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RI 231 (967)
T ss_pred EEEEecc-ccCC-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--ee
Confidence 3466665 2222 23347999999999999999999999999999999999987554 6789999999999964 3 89
Q ss_pred EEecCCCeEEEEcCccccCCCccceeeccccc-CeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+|++.|.+.++|+. ++.....+.+|.. .+..++...+...++|++.|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999964 3344447778875 589999998888999999999999999753
No 222
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.20 E-value=1e-09 Score=91.54 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
-.++.|++.|..++++-.+|.+.+-+.....+.. .+..|.-......|+..+++++.+|+.|+.+.-||+|..+ ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--TF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--ce
Confidence 4578888889999999999999866665555544 6788999999999987788999999999999999998321 11
Q ss_pred cceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccc
Q 022074 120 PAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
....-.-|..+|.++..+| .+.+++||+.|-.|++||+|.+
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 1122234888999987665 5789999999999999999964
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=7e-11 Score=97.09 Aligned_cols=117 Identities=22% Similarity=0.379 Sum_probs=96.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceE--EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.-|+++|.++.|.+.-..=++|+.+..+..|+++.. .+. ....-.+.+|..+.+- ++++.++|+++|+.+|+|..
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEe
Confidence 579999999999987667788888888999988654 221 1222344678888884 56899999999999999987
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
+ +..+...+.-|.++|++++|+|+.++++.+|.|+.|.+|++
T Consensus 281 r----tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 R----TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c----cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6 45677788889999999999999999999999999999986
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=8.1e-10 Score=94.05 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----eEEEEeccc------------CCeEEEEEccC-CCcEEEEecCC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHT------------SDVNTVCFGDE-SGHLIYSGSDD 103 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~-~~~~l~s~s~d 103 (303)
|.++.|...|++|++|..+|.|-+|.-.... ....++.|. ..|+.+.|.++ +...|+....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 7889999999999999999999999654322 222344443 36788888654 35577788889
Q ss_pred CeEEEEcCccccCCC-------------------------------ccceee-cccccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 104 NLCKVWDRRCLNVKG-------------------------------KPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 104 g~v~lWd~~~~~~~~-------------------------------~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
.++++|.++...... .+.+.+ ..|.--+++++++.|++.++++ .|=.
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLR 186 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLR 186 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-ccee
Confidence 999999864211110 000111 2356668889999998878776 5788
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSH 230 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~ 230 (303)
|.+|++......+.. .+.-|. . +..+ ..+++ +..|+| ....++-.++
T Consensus 187 INLWnlei~d~sFnI-------------VDIKP~-------n---mEeL---teVIT------saEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNI-------------VDIKPA-------N---MEEL---TEVIT------SAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eeeccccccCCceeE-------------EEcccc-------C---HHHH---HHHHh------hhccCHhHccEEEEecC
Confidence 999998643221110 000000 0 0000 00011 112333 2456777788
Q ss_pred CCeEEEEECCCCeEE----EEeecC------------CCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 231 DSCVYVYDLVSGEQV----AALKYH------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 231 dg~i~iwd~~~~~~~----~~~~~h------------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|+|+++|++..-+. +.++.. -..|.++.||+.|++++|-+. -++++||+..
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 999999999853211 111111 146899999999999999864 7999999863
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.7e-09 Score=97.51 Aligned_cols=210 Identities=19% Similarity=0.248 Sum_probs=131.7
Q ss_pred CCcccceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccC--------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTS-------------------------------- 82 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-------------------------------- 82 (303)
-+|...-..|..+|||+++ ++|...-.|++||+..-. .++..|.+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 4566677889999999985 556678899999996532 22222211
Q ss_pred ---------CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 83 ---------DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 83 ---------~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
....++++.++-++++.|+ ...|+-.++. .++-...+..-.+.++++.+++...+|++|+.||.|-
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeecCccceEEecccCceEE
Confidence 1123333333333443333 3345444543 2333444444557899999999888999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
.||.|..........+. . +....+.. ......+..|+.+|-.+++|..+|.
T Consensus 201 fwDpR~ksrv~~l~~~~--------------~-----------v~s~pg~~----~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAAS--------------S-----------VNSHPGGD----AAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred Eecchhhhhheeeeccc--------------c-----------cCCCcccc----ccCcceEEEecCCceeEEeeccCCc
Confidence 99998643322211100 0 00000000 0001112347777889999999999
Q ss_pred EEEEECCCCeEEEEeecC--CCCeEEEEECCC--CCeEEEEeCCCCEEEeecCC
Q 022074 234 VYVYDLVSGEQVAALKYH--TSPVRDCSWHPS--QPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 234 i~iwd~~~~~~~~~~~~h--~~~I~~v~~sp~--~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.|||+++.+++.. +-| ..||..++|.+. ++.++|.. ...+++||-..
T Consensus 252 v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~ 303 (703)
T KOG2321|consen 252 VLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECT 303 (703)
T ss_pred EEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc-hHHhhhccccc
Confidence 99999999887644 344 469999999887 45677764 57899999653
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.7e-09 Score=94.02 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=136.7
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEec--c-cCCeEEEEEc------c-------------CCCcEEEEecCCCeE
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILA--H-TSDVNTVCFG------D-------------ESGHLIYSGSDDNLC 106 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--h-~~~v~~l~~~------~-------------~~~~~l~s~s~dg~v 106 (303)
|-..++|....||.+|+||...+++...+.. | .+-+.+..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999987655543 2 2334444552 1 022367778888999
Q ss_pred EEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 107 KVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
-+++.-.+ +....+ .+|.+.|+++..+.+-..|.|++.|..+-.|+......
T Consensus 83 ~~ys~~~g----~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~---------------------- 136 (541)
T KOG4547|consen 83 LLYSVAGG----EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI---------------------- 136 (541)
T ss_pred EEEEecCC----eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence 99986422 222222 35888999998888878899999999999999754211
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC-
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS- 263 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~- 263 (303)
++.+++.... ..+..++||++.+++|+ +.|++||+++++.+..|.+|.++|.+++|--+
T Consensus 137 ------------~~~~~~~~~~------~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 137 ------------IRIWKEQKPL------VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ------------eeeeccCCCc------cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 1112211111 01234678999999887 77999999999999999999999999999877
Q ss_pred ----C-CeEEEEeCCCCEEEeecCC
Q 022074 264 ----Q-PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 264 ----~-~~las~s~Dg~i~~Wd~~~ 283 (303)
| .+|.++..+.-+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 3 4788888899999998754
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.14 E-value=1.7e-09 Score=105.07 Aligned_cols=183 Identities=21% Similarity=0.243 Sum_probs=120.9
Q ss_pred CCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc---cceeecccccCeEEEEeCCCCCEEEEE
Q 022074 70 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 70 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~ 146 (303)
.|.++..+..|...|..++.+++.+.+|+|||.||+||+|+.+....... ...++.--...+..+...+.++++|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 45567778889999999999888778999999999999999863222211 112222234567788888889999999
Q ss_pred eCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EE
Q 022074 147 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YI 225 (303)
Q Consensus 147 ~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 225 (303)
+.||.|++.++..-. ....... +........+.. +..++... ...+. .+
T Consensus 1117 t~DG~v~~~~id~~~--~~~~~~~--------------~~ri~n~~~~g~------------vv~m~a~~--~~~~S~~l 1166 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYN--VSKRVAT--------------QVRIPNLKKDGV------------VVSMHAFT--AIVQSHVL 1166 (1431)
T ss_pred cCCCeEEEEEccccc--cccceee--------------eeecccccCCCc------------eEEeeccc--ccccceeE
Confidence 999999999876420 0000000 000000000001 11111000 01233 67
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 226 YTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.+..-+.|..||+.+..-+-+++ ...+-|++++.+|.+++++.|..-|.+.+||+.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence 778888999999998775443332 334789999999999999999999999999974
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=2.1e-09 Score=88.20 Aligned_cols=112 Identities=25% Similarity=0.434 Sum_probs=81.8
Q ss_pred CcccceEEEEEcCCCCEEEE--eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~s--gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~ 111 (303)
-.+.+|.+++|+|+|+.+++ |..++.|.|||++ ++....+ +...++.+.|+| ++++++.++. .|.+.+||.
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 34456999999999998655 4467799999997 3333333 345788999976 5888888763 577999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC------CCcEEEEEcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------DQAIKLWDIR 158 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------D~~v~lWdl~ 158 (303)
+ +...+... .| ..++.+.|+|+|++|+++.. |..++||+..
T Consensus 133 ~----~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 133 R----KKKKISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred C----CCEEeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 5 22223222 23 34778999999999998874 8899999874
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.8e-08 Score=91.78 Aligned_cols=200 Identities=20% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC--eEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~lWd 110 (303)
..++..+....|+|||+.|+..+.+ ..|.+||+.++... .+....+.+....|+|+...++++.+.++ .|++||
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 3456678999999999998876644 36899999888643 33333444557889765333444666665 577778
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEE--EEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKL--WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~l--Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+... ....+..+........|+++|+.++..+ .++...+ +|+..... .
T Consensus 274 ~~~~-----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---------------~--------- 324 (430)
T PRK00178 274 LASR-----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---------------E--------- 324 (430)
T ss_pred CCCC-----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---------------E---------
Confidence 6522 1223444444455667899998876554 3444444 44321100 0
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d-g--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+ ...+. ....+.++|++++++..+.+ + .|++||+.+++. ..+. +........|||||
T Consensus 325 ~l---------t~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg 385 (430)
T PRK00178 325 RV---------TFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNG 385 (430)
T ss_pred Ee---------ecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCC
Confidence 00 00000 01134578889888776643 3 588999988764 2232 12223356899999
Q ss_pred CeEEEEeCC-C--CEEEeecCCC
Q 022074 265 PMLVSSSWD-G--DVVRWEFPGN 284 (303)
Q Consensus 265 ~~las~s~D-g--~i~~Wd~~~~ 284 (303)
++++-++.+ + .|.+.+..+.
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CEEEEEEecCCceEEEEEECCCC
Confidence 987766543 3 3556666543
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=3.9e-08 Score=90.95 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=110.3
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---CCCeEEEEcCccccCCCccceeecccccCeEEEEeC
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (303)
..|.++|.++.. ...+..|...+....|+|+ ++.|+..+ .+..|.+||+... . ...+..+...+....|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g----~-~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETG----Q-RELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCC----c-EEEeecCCCcccCcEEC
Confidence 368888886554 3456678888999999865 66666554 3568999997532 1 22344455566677899
Q ss_pred CCCCEEE-EEeCCCc--EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEee
Q 022074 138 GDGRYLI-SNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 214 (303)
Q Consensus 138 ~~~~~l~-s~~~D~~--v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (303)
|+|+.|+ +.+.++. |.+||+..... ..+..+.. ...
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------------------~~Lt~~~~------~~~ 293 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTT-----------------------------------TRLTDSPA------IDT 293 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCce-----------------------------------EEccCCCC------ccC
Confidence 9998765 6666666 44456542110 00000000 012
Q ss_pred eeeeeCCCeEEEEEeC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC---CCEEEeecCC
Q 022074 215 SPVYSTGQKYIYTGSH-D--SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPG 283 (303)
Q Consensus 215 ~~~~s~~~~~latg~~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D---g~i~~Wd~~~ 283 (303)
.+.|+||++.++..+. + ..|+++|...++. ..+..+...+....|||||+.|+..+.+ ..|.+||..+
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3568899998887663 2 3689999876654 3343344567778999999998876654 3577788644
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=8e-09 Score=95.25 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCEEEEe-eCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE-EecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s~dg~v~lWd~~~~~~~ 117 (303)
+.+..|+|||+.|+.. +.+| .|++||++++... ++..+...+....|+|+ ++.++ +...++...+|.... .
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~---~ 319 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNI---N 319 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEEC---C
Confidence 4467999999988764 4454 5889999888654 44445556778899765 56554 444455556664321 1
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCC---CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D---~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+..+........++|+|++|+..+.+ ..+.+||+.....
T Consensus 320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------------------------------- 367 (429)
T PRK03629 320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------------------------------- 367 (429)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--------------------------------
Confidence 11122233333344567789999998776543 3466677643110
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe---EEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~---i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
..+.... ....|.|+|||++|+.++.++. ++++++. |.....+..|.+.+...+|||
T Consensus 368 ---~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 368 ---QVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---EEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 0000000 0124668899999999887765 7777874 555566778888999999998
No 232
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.6e-09 Score=94.28 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=99.4
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
.+++|+. ++..+++++.||++|+|+.. ....+..+..|...|..++|++||..|++-+.| ..++|+++.....+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~P----s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWP----SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecC----cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 5778864 57899999999999999953 223344566788999999999999999999999 99999987642211
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-----eEEEEEeCCCeEEEEEC
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-----KYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~latg~~dg~i~iwd~ 239 (303)
... .....+. ...|.| +.++ .+++....-+.|+.||+
T Consensus 222 ~~t--~~~k~~~--------------------------------~~~cRF----~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 222 RKT--PFSKDEM--------------------------------FSSCRF----SVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hcC--Ccccchh--------------------------------hhhcee----cccCCCceEEEEEecCCCCceeEEEe
Confidence 110 0000000 011111 1111 22222334445555554
Q ss_pred CCCeE---E--E-EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 240 VSGEQ---V--A-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 240 ~~~~~---~--~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...+. + . .+..+ ..|.+++.|++|+++|-|+.||.+-+.+...
T Consensus 264 ~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred eeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 32211 1 1 11222 3699999999999999999999999998654
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=1.2e-07 Score=80.24 Aligned_cols=230 Identities=16% Similarity=0.229 Sum_probs=147.9
Q ss_pred EccCch-hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEec--ccCCe
Q 022074 9 DVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILA--HTSDV 84 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~--h~~~v 84 (303)
.||-|+ -.|--|=-+|||..+.-...+--+..+|.++.++++ .|++. -.+.|+||...+. +....+.. --.++
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCce
Confidence 455555 455556667888776667777788899999999975 45554 4567999988643 22222221 12346
Q ss_pred EEEEEccCCCcEEE-EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCc-EEEEEcccccC
Q 022074 85 NTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSS 162 (303)
Q Consensus 85 ~~l~~~~~~~~~l~-s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~-v~lWdl~~~~~ 162 (303)
++++-+. +..+|+ =|-.-|+|.+-|+..... .+......|...|.+++.+.+|.++||+|..|+ |||||.+....
T Consensus 140 C~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 140 CSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred EeecCCC-CceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 6665432 233443 344678999999863221 134466789999999999999999999997665 79999865322
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
. ..+....... -.++.+|||+.++||++|..|+++|+.++..
T Consensus 217 l----------------------------------~E~RRG~d~A----~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 217 L----------------------------------QELRRGVDRA----DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred e----------------------------------eeeecCCchh----eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 1 1111000000 1123468999999999999999999987532
Q ss_pred e---E---------------------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 243 E---Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 243 ~---~---------------------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
. . ...+.-.+++..-++|-.+.+.++..+.||+-+-+.+.
T Consensus 259 ~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 259 ENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred CCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 1 1 01111224556667777776777777788888777654
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7.6e-09 Score=89.47 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=123.4
Q ss_pred cceEEEEEcCCCC-EEEEeeCC--CeEEEEECCCCceEEEEecc-cC--------CeEEEEEccCC-CcEEEEecCCCeE
Q 022074 40 FGIFSLKFSTDGR-ELVAGSSD--DCIYVYDLEANKLSLRILAH-TS--------DVNTVCFGDES-GHLIYSGSDDNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~g~-~l~sgs~D--g~v~lwd~~~~~~~~~~~~h-~~--------~v~~l~~~~~~-~~~l~s~s~dg~v 106 (303)
.++..+.-++.-. ++++|+.. ..+.|||+.+.+.+.+-..- ++ -++.+.|.++. ...|++++.-++|
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 4577777776544 55668888 77999999888433221111 11 23566775432 5689999999999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
|+||.+. ..+|+..+.--..+++++...|+++++++|..-+.+..||+|.......
T Consensus 229 R~YDt~~---qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--------------------- 284 (412)
T KOG3881|consen 229 RLYDTRH---QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--------------------- 284 (412)
T ss_pred EEecCcc---cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc---------------------
Confidence 9999862 3466766666677899999999999999999999999999987543211
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.++|.......+ ..+|..+++|++|-|.++||+|+++++++... .-...++.+-+.++-
T Consensus 285 ------------~~kg~tGsirsi------h~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 285 ------------GLKGITGSIRSI------HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDDV 343 (412)
T ss_pred ------------ccCCccCCcceE------EEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCCc
Confidence 011111101111 13466789999999999999999997765432 223456777776543
No 235
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=9.9e-10 Score=93.56 Aligned_cols=178 Identities=21% Similarity=0.340 Sum_probs=125.2
Q ss_pred EEEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-Cccc
Q 022074 45 LKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPA 121 (303)
Q Consensus 45 l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-~~~~ 121 (303)
++|+-+ |-. ++.+.+-.|-|-++.+|... ....++.|.++.|. ..+++++.|..+|.|...|+|+.++- +.+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q--sf~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ--SFQSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc--ccccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 466643 434 44455666889999998643 33466789999995 45789999999999999999976432 1222
Q ss_pred eeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
..+ -|..+|+++..-. ++.+|++.+-+|+|++||+|..+. ...+..+
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qY 340 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQY 340 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeee
Confidence 222 3888999987766 788999999999999999985432 2235556
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCeEEEEECC
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHP 262 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----~~~I~~v~~sp 262 (303)
.||......+..+. .+....++++|+|=+.|||.++.|.++.+++-. +..+++++|..
T Consensus 341 eGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 341 EGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccccccccccccc----ccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 66655443333332 234567888999999999999999998887532 33567777754
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.04 E-value=6.7e-10 Score=97.81 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
+|..+.|.|.-=.|++++..|.++--|+.+|+++..+..-.+.+..++.+|- +-.+-.|..+|+|.+|... ...+
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~----skeP 285 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPN----SKEP 285 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-cceEEEcCCCceEEecCCC----Ccch
Confidence 6888899998777888899999999999999988777666677888888764 4578899999999999864 2344
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
...+..|.++|.++++.++|+|++|.|.|+.++|||+|...
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 55566799999999999999999999999999999999744
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1e-07 Score=88.35 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCEEEEeeCC-C--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe--EEEEcCccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCL 114 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~D-g--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~lWd~~~~ 114 (303)
..+.+..|+|||+.|+..+.+ + .|++||+.+++.. .+....+......|+|+...++++.+.++. |.++|+...
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 456789999999988876543 2 5888899887643 233223344577897654434456667775 666675421
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
....+..+........|+++|+.|+..+ .++...+| |+..... .
T Consensus 297 -----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--------~-------------------- 343 (448)
T PRK04792 297 -----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--------S-------------------- 343 (448)
T ss_pred -----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------E--------------------
Confidence 2233334444456678999998876544 44555555 3321100 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
..++.+.. ...+.++|++++++..+. ++ .|.++|+.+++.. .+... .......|+|||++|+
T Consensus 344 -----~Lt~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 344 -----RLTFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred -----EEecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 00001100 113457889988877654 33 5677888877642 23222 1223458999999766
Q ss_pred EEeC-CCC--EEEeecCCC
Q 022074 269 SSSW-DGD--VVRWEFPGN 284 (303)
Q Consensus 269 s~s~-Dg~--i~~Wd~~~~ 284 (303)
-++. ++. +.+++..+.
T Consensus 409 ~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 5554 443 566666543
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=2.6e-08 Score=85.05 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=159.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
-||-..|++...-|..+-+.+.+.|.++|||-- +.++-...+.. -..+++++.+.++ ...|+.|-.+|++.-+.+..
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEEEEhhh
Confidence 477777888888888888999999999999933 33443222221 1257888888654 56788899999999886532
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc--cceeeeceeeeC----CCCCc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF--RSYEWDYRWMDY----PPQAR 187 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~ 187 (303)
.-......+....|...+..+-|+..-+++++.+.|+.+.---.+.......+.+.- ....++.. ..+ .....
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt 178 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSGQIT 178 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEecccccceE
Confidence 111223455677899999999888888899999999886544333222111111000 00001100 000 00000
Q ss_pred c--ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCC
Q 022074 188 D--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 188 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~ 264 (303)
. +....-+.+..+.+|..-.. ...+.+..+.|.+|..|..+-+||+.-+.. ..++.+|...|..+..-+..
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~------~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVT------CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred EEEEeecCCceEEEEcCcccceE------EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence 0 00001122333444432222 223456678899999999999999975543 45677899999999999999
Q ss_pred CeEEEEeCCCCEEEeecCCCCccCCCC
Q 022074 265 PMLVSSSWDGDVVRWEFPGNGEAAPPL 291 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~~~~~~~~~ 291 (303)
+.|.|+++||.|.+|+....+.+.+..
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r~etpew 279 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKRVETPEW 279 (404)
T ss_pred eeeeeccCCCeEEEEeccceeecCccc
Confidence 999999999999999998887776654
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=2.6e-07 Score=85.13 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCEE---EEeeCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC----eEEEEc
Q 022074 40 FGIFSLKFSTDGREL---VAGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWD 110 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l---~sgs~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~lWd 110 (303)
....+=.|||||+.+ ++...+| .|++.++.++... ++....+......|+|+...++++.+.+| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 345667899999852 2443343 5788899877643 34444455567789865334444443333 344466
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
+.... .+.+.....++........|+|||+.|+..+ .++...+|.+.......
T Consensus 264 ~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~------------------------- 317 (428)
T PRK01029 264 LETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ------------------------- 317 (428)
T ss_pred cccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-------------------------
Confidence 54210 1122222222223345568999999877655 56777777543210000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
....+.... .....|.+||||+.|+..+.+ ..|++||+.+++.. .+......+....|+|||++
T Consensus 318 ------~~~~lt~~~------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 318 ------SPRLLTKKY------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLH 384 (428)
T ss_pred ------ceEEeccCC------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCE
Confidence 000000000 011245688999988876543 47999999888753 33323345778999999997
Q ss_pred EEE-EeC--CCCEEEeecCCC
Q 022074 267 LVS-SSW--DGDVVRWEFPGN 284 (303)
Q Consensus 267 las-~s~--Dg~i~~Wd~~~~ 284 (303)
|+- +.. ...|.+|++.+.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEECCCCCceEEEEECCCC
Confidence 764 332 356777887653
No 240
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=109.70 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=135.5
Q ss_pred EEEEcc--CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCC
Q 022074 6 HIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 6 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
||.+.+ +|+-|.++.+||--.|.+---....|- ..|..+.|+.+|+....+..||.+.+|... .+.....+.|+..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKA 2294 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcc
Confidence 555554 566677888888744444433333455 788999999999999999999999999876 3344556779988
Q ss_pred eEEEEEccCCCcEEEEec---CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 84 VNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
...+.|-. ..+++++ .++.+.+||.- ...........|..+++++++-|...+|++||++|.|++||+|..
T Consensus 2295 ~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl---~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2295 LSDFRFIG---SLLATAGRSSDNRNVCLWDTL---LPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccceeeee---hhhhccccCCCCCcccchhcc---cCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 89998842 5677664 47899999953 122222334679999999999999999999999999999999853
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
+.. +.+ + ... ...++++|+..|+|+||++.
T Consensus 2369 ql~----h~~------------------------------~---------------~~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2369 QLR----HTF------------------------------Q---------------ALD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred HHH----HHh------------------------------h---------------hhh-hhheeeccCcccceEEEEcc
Confidence 211 000 0 001 24679999999999999998
Q ss_pred CCeEEEEee
Q 022074 241 SGEQVAALK 249 (303)
Q Consensus 241 ~~~~~~~~~ 249 (303)
.-..++++.
T Consensus 2399 ~~~ll~~~p 2407 (2439)
T KOG1064|consen 2399 EFGLLHTFP 2407 (2439)
T ss_pred ccchhhcCc
Confidence 877676654
No 241
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=2.1e-09 Score=63.88 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=36.9
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
++++.++.+|..+|++++|+|++++|+|++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=1.5e-07 Score=86.92 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=105.3
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCccceeecccccCeEEEEeC
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (303)
..|.++|.+.. ....+..+...+...+|+|+ ++.++..+. ...|.+||+... . ...+......+....|+
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g----~-~~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATG----R-RRVVANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCC----C-EEEeecCCCCccceEEC
Confidence 35777776443 33445667778889999865 666665543 346999997532 1 12232233445577899
Q ss_pred CCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeee
Q 022074 138 GDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216 (303)
Q Consensus 138 ~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (303)
|||+.|+ +.+.++...||.+...... ...+..+.. ....+
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------------~~~lt~~~~------~~~~~ 289 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG---------------------------------LRRLTQSSG------IDTEP 289 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC---------------------------------cEECCCCCC------CCcCe
Confidence 9998876 6778888888875421000 000000000 01134
Q ss_pred eeeCCCeEEEEEeC-CCeEEEE--ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCCC
Q 022074 217 VYSTGQKYIYTGSH-DSCVYVY--DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGN 284 (303)
Q Consensus 217 ~~s~~~~~latg~~-dg~i~iw--d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~~ 284 (303)
.|+|||+.|+..+. +|...+| +..+++. ..+..+.......+|||||++|+..+.++ .|.+||+...
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 58899998876654 4555555 5445443 22222223345679999999998777654 5999998654
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=5.1e-08 Score=83.26 Aligned_cols=215 Identities=17% Similarity=0.304 Sum_probs=130.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE---Eeccc-----CCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~---~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
++|..-|.+|+++.|++.++++ .|=.|.||.+.--..... +.+++ ..|++..|+|..-++|+-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 5999999999999999999987 455699998864332222 23333 35778889887677888888899999
Q ss_pred EEcCccccCCCcccee------------ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCcccee
Q 022074 108 VWDRRCLNVKGKPAGV------------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFRSYE 174 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~~~~ 174 (303)
|-|.|....-...... +.+-..+|..+.|+++|+|+++=.. -+|++||+.... +......
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v------ 312 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV------ 312 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee------
Confidence 9998732111111111 1222346778899999999998754 799999985421 1111000
Q ss_pred eeceeeeCCCCCccccCCCC-CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEee---
Q 022074 175 WDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALK--- 249 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~--- 249 (303)
+... ..++.+-... ++-..|.-.++.+++++.||+.....++++...|.. ..+++
T Consensus 313 ----------------h~~lr~kLc~lYEnD----~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr 372 (433)
T KOG1354|consen 313 ----------------HEYLRSKLCSLYEND----AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASR 372 (433)
T ss_pred ----------------hHhHHHHHHHHhhcc----chhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccc
Confidence 0000 0011100000 111112223566788999999999999999654421 11110
Q ss_pred -----------------cC-------------CCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 250 -----------------YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 250 -----------------~h-------------~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+- ...|...+|+|..+.+|.|..+ .+.++
T Consensus 373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 373 KNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred cCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 00 1235567799999988888764 44443
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.90 E-value=9.8e-07 Score=79.55 Aligned_cols=256 Identities=16% Similarity=0.124 Sum_probs=130.7
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc-------cCCeEEE
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTV 87 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h-------~~~v~~l 87 (303)
|..++|++..++.-- .....|- .-.++++|+||++++++. .++++.++|.++.+....+... ...+..+
T Consensus 57 dg~vsviD~~~~~~v-~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 57 DGTVSVIDLATGKVV-ATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp TSEEEEEETTSSSEE-EEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred CCeEEEEECCcccEE-EEEecCC--CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 455677777666522 2222322 357899999999998876 5889999999998877665432 2356777
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEE-EeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~D~~v~lWdl~~~~~~~~~ 166 (303)
..++....++++--..+.|-+-|.... ..................+.++++|++. ......+-++|+...+.....
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 666654445555555577776675421 1111112222234556778999998765 456778889998764332221
Q ss_pred ccCccce--------------eeeceeeeCC---CCCc-ccc-CC--CCCcceEEecccceeeeEEEeeeeeeeCCCeEE
Q 022074 167 NLGFRSY--------------EWDYRWMDYP---PQAR-DLK-HP--CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225 (303)
Q Consensus 167 ~~~~~~~--------------~~~~~~~~~~---~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 225 (303)
..+.... .|........ .-.. ... +. ....+..+..... -....-+|+++++
T Consensus 211 ~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-------glFi~thP~s~~v 283 (369)
T PF02239_consen 211 DTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-------GLFIKTHPDSRYV 283 (369)
T ss_dssp E-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-------S--EE--TT-SEE
T ss_pred eccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-------cceeecCCCCccE
Confidence 1111000 0111100000 0000 000 00 0001111111000 0011237889998
Q ss_pred EEE----eCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEeCC--CCEEEeecCCC
Q 022074 226 YTG----SHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWD--GDVVRWEFPGN 284 (303)
Q Consensus 226 atg----~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s~D--g~i~~Wd~~~~ 284 (303)
... ..+++|.++|.++.+.+..+... ..++..+.|++||+++-.+..+ +.|.++|.+.-
T Consensus 284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 888 45689999999999887777532 2369999999999954444333 36999997643
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.90 E-value=7.7e-09 Score=103.87 Aligned_cols=186 Identities=16% Similarity=0.270 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.++.=+|.-.+.++|+.||.|++|.-..++.+..+.. -...|+.+.|+. +|+.+..+..||.+.+|-.. .+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-----PK 2283 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-----Cc
Confidence 678888888888999999999999999877766544332 237888889975 47788889999999999753 34
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEe---CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+....+.|..+.+.+.|-. ..+++++ .++.+.+||.-..... . .
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~------------------------s-------~ 2330 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN------------------------S-------L 2330 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc------------------------c-------e
Confidence 4445566777666655543 4677765 4789999996421100 0 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
+- +.|..-.+ ...|-|..++|++||-+|.|++||++.+++..++.. +. ...++++++..|.+
T Consensus 2331 v~--~~H~~gaT------~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGAT------VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred ee--eecCCCce------EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccce
Confidence 10 11111111 123567889999999999999999999887766543 44 56789999999999
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
++|++..
T Consensus 2393 kIw~~s~ 2399 (2439)
T KOG1064|consen 2393 KIWRLSE 2399 (2439)
T ss_pred EEEEccc
Confidence 9999764
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.88 E-value=4.2e-07 Score=77.40 Aligned_cols=243 Identities=15% Similarity=0.234 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc-----
Q 022074 42 IFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----- 115 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~----- 115 (303)
|.-|.|..|..+++++ ..|+.|.+|++.......++..-..++...+|+|+..+.|.+...+-.+.+|.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 5567888888776664 6788999999988877777877778999999988766788888889999999753100
Q ss_pred ------------CCCc---------------------------------------------cceee---------cccc-
Q 022074 116 ------------VKGK---------------------------------------------PAGVL---------MGHL- 128 (303)
Q Consensus 116 ------------~~~~---------------------------------------------~~~~~---------~~h~- 128 (303)
..++ ..... .=|.
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~ 210 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG 210 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence 0000 00000 0011
Q ss_pred cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc----c-----------cCccceeeeceeeeCCCCCccccC-C
Q 022074 129 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC----N-----------LGFRSYEWDYRWMDYPPQARDLKH-P 192 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~ 192 (303)
-++..+.++|.+++|+.|+.|+.+|+-+.-.-+....+ . ..+.........+.++|..-.... .
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 24566778888889999999999988653221111000 0 000000000001111111000000 0
Q ss_pred CC----------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 193 CD----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 193 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
.. ..+..++.-.....-....-...||+|..+++|-. .-+.+.+||+.+.+.-..+ ....||....|
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~W 369 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEW 369 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEe
Confidence 00 00000000000000000111235889999999864 4578999999886654444 35569999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
+|..+.|+.....-.+.+|-+.+.+
T Consensus 370 dP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCce
Confidence 9999877777777789999987653
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.9e-07 Score=86.35 Aligned_cols=172 Identities=21% Similarity=0.198 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCEEE-EeeCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE-EecCCCe--EEEEcCccc
Q 022074 41 GIFSLKFSTDGRELV-AGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~-sgs~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s~dg~--v~lWd~~~~ 114 (303)
...+..|+|||+.++ +.+.+| .|++||+.++.. .++..+........|+++ ++.++ +...+|. +.++|+..
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~- 325 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASG- 325 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCC-
Confidence 345789999999775 445555 599999988864 345555555567889765 55555 4445555 55555432
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC---cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~---~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
+. ...+..+.......+++|+|++++..+.++ .|.+||+......
T Consensus 326 ---g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------------- 373 (433)
T PRK04922 326 ---GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------------- 373 (433)
T ss_pred ---CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----------------------------
Confidence 11 222222223344578999999987665433 5888887532110
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
.+.... ....|.|+|++++++..+. .+.|++++... .....+..+.+.+...+|||
T Consensus 374 -------~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 374 -------TLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -------ECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 000000 0013457889988777665 34688888854 44555666667788889987
No 248
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=1.2e-08 Score=94.76 Aligned_cols=215 Identities=20% Similarity=0.274 Sum_probs=134.5
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
-||+.+|..+.|+|+.. .+++++.|-.+..||+..-.... .+..-..+-..|+|+-.+++.+++ +....|++||.+.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRK 189 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccC
Confidence 49999999999998654 78899999999999998765432 222222455788897677777654 4456899999874
Q ss_pred ccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
. ..+...+.+|...|..++|..- -..+.+.+.|++|+.||-.+..........-....|--+.+ |..
T Consensus 190 g---s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~---Pfg------ 257 (1081)
T KOG0309|consen 190 G---STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL---PFG------ 257 (1081)
T ss_pred C---CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc---ccC------
Confidence 3 3567788889999998887652 34689999999999999765432211110000000000000 000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCC------
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQP------ 265 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~------ 265 (303)
...++.. ..++..+..---+..-..|+..++ ..+.+|.+|.+.|.+.-|-..+.
T Consensus 258 ~g~~~mp-------------------~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 258 EGYCIMP-------------------MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ceeEecc-------------------ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 0000000 001111111111222345555544 46889999999888777754322
Q ss_pred ----eEEEEeCCCCEEEeecC
Q 022074 266 ----MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 266 ----~las~s~Dg~i~~Wd~~ 282 (303)
+|+|-|-|..+++|.+.
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccceeEEEeecCCceEeeecc
Confidence 89999999999999875
No 249
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.5e-07 Score=81.03 Aligned_cols=166 Identities=16% Similarity=0.264 Sum_probs=105.1
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
.+..++|++ .-..|+++..|..|++||... .....+.. -...|++++|.|.+..-++.+--+.|.+|......
T Consensus 100 dlr~~aWhq-H~~~fava~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 100 DLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred ceeeEeech-hhhhhhhhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 567888964 455688999999999999653 11222221 23579999999865444444445789999765321
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECC
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV 240 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~ 240 (303)
... +.+ + +....-..+....||.. .+.+ .+.+||..+++++ .|..|.|||..
T Consensus 174 n~~------r~~----~----------~~s~~~~qvl~~pgh~p-Vtsm------qwn~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 174 NAN------RNI----R----------MMSTHHLQVLQDPGHNP-VTSM------QWNEDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred ccc------ccc----c----------cccccchhheeCCCCce-eeEE------EEcCCCCEEeecccCcceEEEEcCC
Confidence 100 000 0 00000001222334421 2222 2456788899987 67889999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++.++--..---+.+.-+.||||+.+|+++.-|++.++|+.
T Consensus 227 tg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 227 TGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 98764333223356889999999999999999999999954
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.83 E-value=4.4e-08 Score=83.65 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=66.4
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
..++.+|.+.+.+++|. +...+|++|..|..|.+||+... ......+.+|.+.|..+..-+--..+.+++.|+.|-
T Consensus 190 i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~---~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 190 ITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGR---KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred EEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCC---cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 34567899999999995 45678999999999999997522 223456789999998877666677899999999999
Q ss_pred EEEccc
Q 022074 154 LWDIRK 159 (303)
Q Consensus 154 lWdl~~ 159 (303)
+||+..
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999864
No 251
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=4.6e-08 Score=82.61 Aligned_cols=210 Identities=19% Similarity=0.288 Sum_probs=127.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--e---EEEEeccc------------CCeEEEEEccC-CCcEEEEec
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--L---SLRILAHT------------SDVNTVCFGDE-SGHLIYSGS 101 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~---~~~~~~h~------------~~v~~l~~~~~-~~~~l~s~s 101 (303)
--|.++.|...|.++++|...|.|.+|+-.... . ...++.|. ..|+.+.|..+ ....|+-.+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 348899999999999999999999999765432 1 12244553 35788888543 345677788
Q ss_pred CCCeEEEEcCccccC---------------CCc-----------------------cceee-cccccCeEEEEeCCCCCE
Q 022074 102 DDNLCKVWDRRCLNV---------------KGK-----------------------PAGVL-MGHLEGITFIDSRGDGRY 142 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~---------------~~~-----------------------~~~~~-~~h~~~v~~~~~~~~~~~ 142 (303)
.|.++++|.++..+. .+. +.+.. ..|.--+.++++..|.+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999998642100 000 11111 235555778888887776
Q ss_pred EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC-
Q 022074 143 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG- 221 (303)
Q Consensus 143 l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 221 (303)
++++ .|=.|.+|++......+.. .+. +.+.. ..+.....+..|+|.
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFnI-------------VDi------------------KP~nm-eeLteVItSaeFhp~~ 233 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFNI-------------VDI------------------KPHNM-EELTEVITSAEFHPEM 233 (460)
T ss_pred eeec-cceeeeeccccccCCceEE-------------Eec------------------cCccH-HHHHHHHhhcccCHhH
Confidence 6665 6788999998653321110 000 00000 000001112223332
Q ss_pred CeEEEEEeCCCeEEEEECCCCe------EEEEe----------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGE------QVAAL----------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~------~~~~~----------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...+.-.++.|.|++.|+++.. ++... ++-...|.++.|+++|+++++-+. -++++||+..
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 2344456678999999987432 11111 112357899999999999999875 6999999863
No 252
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=4.8e-08 Score=80.51 Aligned_cols=63 Identities=27% Similarity=0.491 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
++.++++|++||.+.+||.++... ...++.|+.+|+.+.|+|..+ .|+++++||.+..||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 456788999999999999998754 445689999999999999764 799999999999999764
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.80 E-value=1.1e-06 Score=80.61 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=107.8
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC---CeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.++|...+. ...+..+...+....|+|+ ++.++.++.+ ..|++||+... . ...+..+...+....|+|
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g----~-~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATG----Q-REKVASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCC----C-EEEeecCCCCccceEECC
Confidence 57788876544 3446666667888899764 6666655432 47999997522 1 122333444556678999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
+++.|+ +.+.++ .|.+||+...... .+..+. .....
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------------------~l~~~~------~~~~~ 282 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------------------RLTNGP------GIDTE 282 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE-----------------------------------ECCCCC------CCCCC
Confidence 998775 444444 4777776432100 000000 00113
Q ss_pred eeeeCCCeEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPG 283 (303)
Q Consensus 216 ~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~ 283 (303)
+.|+++++.|+..+.. ..|+++|..+++. ..+..+...+....|+|++++|+.++.++ .|.+||+..
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 4567888887766542 2688889887664 34444556778899999999988888776 788888764
No 254
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=3.8e-07 Score=86.83 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=126.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
++..++.|+--..+..+|+.+.++........++|.-++.+ ++.+++|...|+|.+=|.+ ..+++..+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 35567777766678888998887654444344467777763 5789999999999999876 4456778899999
Q ss_pred CeEEEEeCCCCCEEEEEeC---------CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 130 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~---------D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
.+..++. .|++|+|+|. |.=|++||||.++......... .|
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------------~P---------------- 268 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------------GP---------------- 268 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------------Cc----------------
Confidence 9988765 6889999886 5667899999765432211100 00
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeE---EEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~---~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
+ .++. .|.+ ...++..+..|...+.|..+ .+. +..+......+..+++|++++.||-+..+|.+
T Consensus 269 ---~----flrf--~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 269 ---Q----FLRF--HPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ---h----hhhh--cccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 0 1111 1211 24578889999999999432 222 22223333459999999999999999999999
Q ss_pred EEee
Q 022074 277 VRWE 280 (303)
Q Consensus 277 ~~Wd 280 (303)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9997
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.77 E-value=1.4e-07 Score=80.24 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=118.0
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
-++|||+|+++|+.+.- .+.|=|..+-+.. ++..--+.|.-+.|..++-..+-....++.|.+|++... .--+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----ew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-QLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----EWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-HHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc----eeEEE
Confidence 46899999999999877 4666666554421 112223567778886554445555678999999997521 12233
Q ss_pred ecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCc--ccccCccceeeeceeeeCCCCCccccC----CCCCc
Q 022074 124 LMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNA--SCNLGFRSYEWDYRWMDYPPQARDLKH----PCDQS 196 (303)
Q Consensus 124 ~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 196 (303)
...-.+++.++.++|+|+ .|.+...|-.|.+|.+...+..- -.+.+. +...+.++++.... .|.+.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~-------kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV-------KGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc-------eeEEECCCCceeeeeecccHHHH
Confidence 445567889999999994 45677789999999875422100 000011 11122222221111 11111
Q ss_pred ceEE-------ecccce--eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCe
Q 022074 197 VATY-------KGHSVL--RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPM 266 (303)
Q Consensus 197 ~~~~-------~~~~~~--~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~ 266 (303)
+..+ -++-.. ...... .++|||.. +.+||.--.-++. ..|. -.+..++|||.+++
T Consensus 160 v~i~~c~~W~ll~~f~~dT~Dltgi----eWsPdg~~---------laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGI----EWSPDGNW---------LAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCc----eECCCCcE---------EEEecchhhheee--eeeeccceeEEEeccccce
Confidence 0000 000000 011112 24566655 5678754332332 2232 46889999999999
Q ss_pred EEEEeCCCCEEE
Q 022074 267 LVSSSWDGDVVR 278 (303)
Q Consensus 267 las~s~Dg~i~~ 278 (303)
|+.|+.|+.+++
T Consensus 225 lavGsyD~~lrv 236 (447)
T KOG4497|consen 225 LAVGSYDQMLRV 236 (447)
T ss_pred EEeeccchhhhh
Confidence 999999998875
No 256
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.1e-06 Score=72.99 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=121.4
Q ss_pred CCCEEEEeeCCCeEEEEECCCCce-EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
.-.+|+.|+.-|...+|...+.+. ...-..|..+|+-+.-..+..-.+..++.|.++++.++.... .+ ...|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~-----~~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NK-----FAVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-cc-----ceeec
Confidence 345799999999999999986543 333344555555442212233356678999999998865221 11 12244
Q ss_pred cC--eEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccce
Q 022074 129 EG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 206 (303)
Q Consensus 129 ~~--v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (303)
.. +..+++++++.++++.|.-..|.+|.+.....-- ... .++...
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-----~~~---------------~~a~t~------------- 203 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-----ENI---------------YEAPTS------------- 203 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----eee---------------EecccC-------------
Confidence 43 7788999999999999999999999875421100 000 000000
Q ss_pred eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EE----EeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEe
Q 022074 207 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VA----ALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRW 279 (303)
Q Consensus 207 ~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~----~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~W 279 (303)
...|...|+.....+|++.+||++.|||++.... +. +-..|.+.+..|.|+|-|. +|+-.-.-+.+.+-
T Consensus 204 ----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 204 ----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ----CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 0112334566677899999999999999986532 21 2236889999999999765 44444445666777
Q ss_pred ecC
Q 022074 280 EFP 282 (303)
Q Consensus 280 d~~ 282 (303)
|..
T Consensus 280 D~R 282 (344)
T KOG4532|consen 280 DTR 282 (344)
T ss_pred Ecc
Confidence 654
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.73 E-value=5.6e-06 Score=84.12 Aligned_cols=222 Identities=10% Similarity=0.092 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc-----------------cCCeEEEEEccCCCcEEEEecCC
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
-..|+++++++.|+++. ..+.|+++|..++... ++.+- -..-..+++.+.++.++++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 57889999888766654 4567999998876532 22110 01234678876567788888889
Q ss_pred CeEEEEcCccccCC-----Cccceeeccc------ccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 104 NLCKVWDRRCLNVK-----GKPAGVLMGH------LEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 104 g~v~lWd~~~~~~~-----~~~~~~~~~h------~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+.|++||....... +. .....++ -.....+++++++. ++++.+.++.|++||+......... .+..
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~ 782 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDP 782 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCc-cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-eccc
Confidence 99999996421100 00 0000111 12345688899987 5567777899999998642110000 0000
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 249 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-- 249 (303)
..+.... ..... ++... ...........++++|.++++...+++|++||..++.......
T Consensus 783 ---------~~~~~l~--~fG~~------dG~g~-~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 783 ---------TFSDNLF--KFGDH------DGVGS-EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred ---------ccCcccc--cccCC------CCchh-hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 0000000 00000 00000 0000001122356788888888999999999998876542221
Q ss_pred -----------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 -----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 -----------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.-.....++++++|+++++-+.++.|++||+...
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 11235789999999999999999999999998654
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.71 E-value=3.3e-05 Score=69.29 Aligned_cols=240 Identities=14% Similarity=0.191 Sum_probs=129.5
Q ss_pred EEEEEcCCCCEEEEeeC----CCeEEEEECCCC--ceEE--EEecccCCeEEEEEccCCCcEEEEec-CCCeEEEEcCcc
Q 022074 43 FSLKFSTDGRELVAGSS----DDCIYVYDLEAN--KLSL--RILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRC 113 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~----Dg~v~lwd~~~~--~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~v~lWd~~~ 113 (303)
.-++++|++++|++... ++.|..|++... ++.. +........+.+++.+ ++++|+++. .+|+|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccC
Confidence 44778999999999876 568989988764 3322 2222334556778865 466766665 589999998753
Q ss_pred ccCCCccceee--c--------ccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCc-cceeeeceeee
Q 022074 114 LNVKGKPAGVL--M--------GHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGF-RSYEWDYRWMD 181 (303)
Q Consensus 114 ~~~~~~~~~~~--~--------~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~-~~~~~~~~~~~ 181 (303)
..........+ . .-....+++.++|++++++... ....|.+|++............. .......+.+.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 11111111111 0 1123467889999999876654 45688889886533111000000 00001123344
Q ss_pred CCCCCccccCCC--CCcceEEecc--c-ceeeeEE------------EeeeeeeeCCCeEEEEEe-CCCeEEEEECC--C
Q 022074 182 YPPQARDLKHPC--DQSVATYKGH--S-VLRTLIR------------CHFSPVYSTGQKYIYTGS-HDSCVYVYDLV--S 241 (303)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~------------~~~~~~~s~~~~~latg~-~dg~i~iwd~~--~ 241 (303)
+.++.+.+-..+ ...+..+.-. . ....... ......++||+++|.+.. .+..|.+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 444433321111 1122222111 0 0000000 011234789999887765 67889999983 3
Q ss_pred Ce--EEEEeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecCC
Q 022074 242 GE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 283 (303)
Q Consensus 242 ~~--~~~~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~ 283 (303)
++ .+..+.........++++|+|++|+.+. .++.|.+|++..
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 43 3444444445589999999999888776 567899998753
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=1.4e-05 Score=73.31 Aligned_cols=192 Identities=10% Similarity=0.055 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCE-EEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC--CeEEEEcCccc
Q 022074 41 GIFSLKFSTDGRE-LVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~-l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~lWd~~~~ 114 (303)
....-.|+|||+. ++..+.+ ..|+++|+.+++.. .+....+......|+|+...++++.+.+ ..|.++|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678999999985 5544443 46899999888654 3434445566678987655566666555 45666675421
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
....+..+........|+|||+.|+-.+ ..+.-.|| |+..... +.+
T Consensus 268 -----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------~rl-- 316 (419)
T PRK04043 268 -----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------------------------EQV-- 316 (419)
T ss_pred -----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------------------------EeC--
Confidence 1222333332223446899998765444 44443444 3321100 000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---------CeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+..+. ..+.+||+|++++..... ..|++.|+.+++. ..+... .......|||
T Consensus 317 -------t~~g~----------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP 377 (419)
T PRK04043 317 -------VFHGK----------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS 377 (419)
T ss_pred -------ccCCC----------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC
Confidence 00010 012467888877766543 3788989888764 333322 2334688999
Q ss_pred CCCeEEEEeC-CCC--EEEeecCC
Q 022074 263 SQPMLVSSSW-DGD--VVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~-Dg~--i~~Wd~~~ 283 (303)
||++|+-.+. .+. |.+.++.+
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 9996554443 344 34445444
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.61 E-value=7.2e-06 Score=69.01 Aligned_cols=187 Identities=18% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCceEE---EEecccCCeEEEEEcc--CCCc-EEEEecCCCeEEEEcCccccCCCccceeecccccC---
Q 022074 60 DDCIYVYDLEANKLSL---RILAHTSDVNTVCFGD--ESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--- 130 (303)
Q Consensus 60 Dg~v~lwd~~~~~~~~---~~~~h~~~v~~l~~~~--~~~~-~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~--- 130 (303)
.|.+.+|++...+... .....+..++.+.|.. .+++ .++-+..+|.|.++...... .......+.+..-.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccchhhhhhee
Confidence 4678888887655332 1222335567777732 2344 56677888999998643110 00001111111111
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 131 v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
-.++++++.+..++++-.+|.+.+-+-.... ...++.+++|.+.....
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--------------------------------le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV--------------------------------LEKVQTWKVHEFEAWTA 171 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee--------------------------------eeecccccccceeeeee
Confidence 2356777778788888777777743322110 11234555555433222
Q ss_pred EEeeeeeeeCCCeEEEEEeCCCeEEEEECC-CCeEEEE-eecCCCCeEEEEECCC-CCeEEEEeCCCCEEEeecCCC
Q 022074 211 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVAA-LKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 211 ~~~~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~~~~-~~~h~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|+- .+..++.+||.|+.+..||++ .++.+.. .+.|...|.++.=||- ..+++||+.|-.|++||...+
T Consensus 172 --~f~~---~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 172 --KFSD---KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred --eccc---CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 2221 133689999999999999998 3444443 4678889999998875 558999999999999998754
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.60 E-value=0.00016 Score=64.36 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=135.7
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC----------CCeEEEEECCCCceE
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----------DDCIYVYDLEANKLS 74 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~----------Dg~v~lwd~~~~~~~ 74 (303)
+-+.|.+...|..-+.|.+.=++. ..+..+.|..-.. + +||||+.++++.. +..|.+||+.+.+..
T Consensus 15 v~V~d~~~~~~~~~v~ViD~~~~~-v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 15 VYVLDPGHFAATTQVYTIDGEAGR-VLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred EEEECCcccccCceEEEEECCCCE-EEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 556666766666777777764433 2233445544443 4 9999999888766 778999999999887
Q ss_pred EEEeccc-------CCeEEEEEccCCCcEEEEec-C-CCeEEEEcCccccCCCccceeecccccCeEE--------EEeC
Q 022074 75 LRILAHT-------SDVNTVCFGDESGHLIYSGS-D-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITF--------IDSR 137 (303)
Q Consensus 75 ~~~~~h~-------~~v~~l~~~~~~~~~l~s~s-~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~--------~~~~ 137 (303)
.++.--. .....+++++ ++++++... . +..|.+.|+.... ......- .++... ...+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~k----vv~ei~v-p~~~~vy~t~e~~~~~~~ 164 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKA----FVRMMDV-PDCYHIFPTANDTFFMHC 164 (352)
T ss_pred eEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCc----EEEEEeC-CCCcEEEEecCCccEEEe
Confidence 6655311 1223566765 577777665 3 6899999976322 2221111 111111 1122
Q ss_pred CCCCEE-EEEeCCCcEE-----EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEec--ccc--ee
Q 022074 138 GDGRYL-ISNGKDQAIK-----LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSV--LR 207 (303)
Q Consensus 138 ~~~~~l-~s~~~D~~v~-----lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~ 207 (303)
.||.++ ++...+|... +++-... ..+ .+. . -.+.+.+.+.......+..++- ... ..
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~-----~rP-~------~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLI-----NHP-A------YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP 231 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCcc-ccc-----cCC-c------eEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence 333332 2233333322 1111000 000 000 0 0011222222222222222220 000 00
Q ss_pred --eeEEE-----ee-----e-eeeeCCCeEEEEEe----------CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 208 --TLIRC-----HF-----S-PVYSTGQKYIYTGS----------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 208 --~~~~~-----~~-----~-~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
..... .+ . ..++++++.+.... ..+.|.++|..+++.+..+.. ..+++.+++|||+
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence 00000 00 0 23667777766632 235899999999999888763 3589999999999
Q ss_pred C-eEEEEe-CCCCEEEeecCCC
Q 022074 265 P-MLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 265 ~-~las~s-~Dg~i~~Wd~~~~ 284 (303)
+ .|.+.. .++.+.+.|.+..
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC
Confidence 9 777666 5788999997643
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.60 E-value=1.4e-06 Score=75.98 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=96.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE---ecccCCeEEEEEccCCCcEE--EEecCCCeEEEEcCcc
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLI--YSGSDDNLCKVWDRRC 113 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l--~s~s~dg~v~lWd~~~ 113 (303)
..+...+..++.++.+|++..+....+++........++ ..-...-+++.+...+...+ ..++....+.+|...
T Consensus 62 ~~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~- 140 (390)
T KOG3914|consen 62 SLAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD- 140 (390)
T ss_pred hccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc-
Confidence 345666778888999998887777667766544321111 11112223444422222222 122333344444422
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
........||..-+..+++++|++.++|+.+|..||+-.......+.+.
T Consensus 141 ----~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------- 189 (390)
T KOG3914|consen 141 ----SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--------------------------- 189 (390)
T ss_pred ----ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------
Confidence 1234456799999999999999999999999999999754321100000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+-||......+. . .+++.|++||.|+++++||+++|+.+.++
T Consensus 190 ------clGH~eFVS~is------l-~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 190 ------CLGHKEFVSTIS------L-TDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ------ccccHhheeeee------e-ccCceeeecCCCCcEEEEecccCCccccc
Confidence 112221111111 1 23566899999999999999999876554
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=2.1e-05 Score=72.68 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=100.8
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-C--CeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-D--NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-d--g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.++|.+.+.. ..+..+...+....|+|+ ++.|+..+. + ..|.+||+... . ...+......+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g----~-~~~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTG----R-REQITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCC----C-EEEccCCCCCcCCeEECC
Confidence 477778876543 445567778889999865 666655443 2 46888887532 1 112222223344577999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
+|+.|+ +.+.++ .|.+||+...... .+..+.. ....
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------------------~lt~~~~------~~~~ 291 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------------------RVTNHPA------IDTE 291 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE-----------------------------------EcccCCC------CcCC
Confidence 998876 555555 4666676431100 0000000 0123
Q ss_pred eeeeCCCeEEEEEeC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-C--CEEEeecCCC
Q 022074 216 PVYSTGQKYIYTGSH-D--SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-G--DVVRWEFPGN 284 (303)
Q Consensus 216 ~~~s~~~~~latg~~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-g--~i~~Wd~~~~ 284 (303)
+.|+||++.++..+. + ..|+++|+.+++.. .+..........+||||++.|+..+.+ + .|.+||+.+.
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 557888887766553 2 36888888777642 222122234567899999988776643 3 4777887653
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=2.8e-05 Score=65.39 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=106.9
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-c------cCCeEEEEEccCC-----CcEEEEecCCCeEEEEc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-H------TSDVNTVCFGDES-----GHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h------~~~v~~l~~~~~~-----~~~l~s~s~dg~v~lWd 110 (303)
..++||||+..||.+...|+|++||+....+. .+.. + ...|..+.|.... ...|+.-..+|.++-|=
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 56899999999999999999999999765432 2221 1 2345556663221 22456667777777554
Q ss_pred Ccccc-CCCcccee--ecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 111 RRCLN-VKGKPAGV--LMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 111 ~~~~~-~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+.... +.-+.... +.. +..+|.++.+++.-++|+.||.... ......+
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~a---------------------- 177 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMSKA---------------------- 177 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccccc----------------------
Confidence 32111 11111112 222 3568999999998888888775432 0000000
Q ss_pred ccccCCCCC-cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC------eEEEEECCCCeEEEEeecCCCCeEEEE
Q 022074 187 RDLKHPCDQ-SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS------CVYVYDLVSGEQVAALKYHTSPVRDCS 259 (303)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg------~i~iwd~~~~~~~~~~~~h~~~I~~v~ 259 (303)
..+.- ....+++. |..+. ++..+|+ +-.+|.+.+.+.-.....-.+.|..|.
T Consensus 178 ----~~~GLtaWRiL~~~----------------Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 178 ----SSCGLTAWRILSDS----------------PYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred ----cccCceEEEEcCCC----------------CcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 00000 00011111 11111 1122221 123444333332222223457899999
Q ss_pred ECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 260 WHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 260 ~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.||||..||+...+|.|.+|+++.-
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcc
Confidence 9999999999999999999999864
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=5.7e-06 Score=76.81 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCEEEE-eeCCCe--EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe--EEEEcCccccC
Q 022074 42 IFSLKFSTDGRELVA-GSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCLNV 116 (303)
Q Consensus 42 v~~l~~s~~g~~l~s-gs~Dg~--v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~lWd~~~~~~ 116 (303)
.....|+|||+.|+. .+.+|. |+++|+.+++.. ++..+........|+|+...++++...++. |.++|+..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--- 339 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--- 339 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC---
Confidence 346799999998765 456664 778898887643 455555556678897654444455555554 55555532
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
+. ...+..........+++|+|++|+..+. ++...|| |+.....
T Consensus 340 -g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------------------------- 386 (448)
T PRK04792 340 -GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------------------------- 386 (448)
T ss_pred -CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------------------------------
Confidence 11 1222111122234578999998876554 4545555 3321100
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
..+.... ....|.++|+++.++.... ++ .+++++. +|.....+..+.+.+...+|||
T Consensus 387 ----~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 387 ----QVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ----EEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 0000000 0013457888888776553 33 3778887 4555666666667788889987
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.4e-07 Score=85.21 Aligned_cols=203 Identities=18% Similarity=0.289 Sum_probs=126.5
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
..||.-.|.++.--.+.+-+++++.|.+|++|.++... .+.++..|+..|..+.|.. +...+ ++.||-++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~ScD~giH 807 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASCDGGIH 807 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-cccee--eeccCcce
Confidence 36999888888777788889999999999999886531 3345678999999999953 33444 45688999
Q ss_pred EEcCccccCCCcccee-ec----ccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 108 VWDRRCLNVKGKPAGV-LM----GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~-~~----~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
+||.. .+++... +. +....|.++. +-+...+. -++...+|+++|-|.. +|...+.
T Consensus 808 lWDPF----igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc-------------e~~~E~k- 868 (1034)
T KOG4190|consen 808 LWDPF----IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC-------------EWTCELK- 868 (1034)
T ss_pred eeccc----ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc-------------cceeeEE-
Confidence 99953 2222211 11 1122344442 22344444 3478999999998742 2221110
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
+....+- ....++. ...+.|.+++.|-..|+|.+.|.++|+.+.....-+.....++ .
T Consensus 869 ---------------Vcna~~P---na~~R~i---aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 869 ---------------VCNAPGP---NALTRAI---AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-A 926 (1034)
T ss_pred ---------------eccCCCC---chheeEE---EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-C
Confidence 0000000 0011111 1235678899999999999999999998776654333333333 2
Q ss_pred CCCCeEEEEeCCCCEEE-eec
Q 022074 262 PSQPMLVSSSWDGDVVR-WEF 281 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~-Wd~ 281 (303)
|..+.|+....|.++.+ |-.
T Consensus 927 psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred chhHHHHhhcccceeEeeehh
Confidence 55667777777888877 753
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.7e-07 Score=55.47 Aligned_cols=32 Identities=47% Similarity=0.596 Sum_probs=31.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 67 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd 67 (303)
.||+.+|.+|+|+|+++.+++|+.|++|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 68999999999999999999999999999997
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=8.4e-06 Score=75.18 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCEEEEeeC-CC----eEEEEECCCC--ceEEEEecc-cCCeEEEEEccCCCcE-EEEecCCCeEEEEcC
Q 022074 41 GIFSLKFSTDGRELVAGSS-DD----CIYVYDLEAN--KLSLRILAH-TSDVNTVCFGDESGHL-IYSGSDDNLCKVWDR 111 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~-Dg----~v~lwd~~~~--~~~~~~~~h-~~~v~~l~~~~~~~~~-l~s~s~dg~v~lWd~ 111 (303)
.....+|||||+.|+..+. +| .+.+|++..+ ....++... .......+|+|+ ++. +++...+|...+|..
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCCceEEEE
Confidence 3456789999998886553 23 2344677653 122233332 233456789765 554 445556776666643
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC---CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D---~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
... ..+.....+..+...+....++|+|+.|+..+.+ ..|.+||+......
T Consensus 311 ~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~------------------------- 364 (428)
T PRK01029 311 QID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY------------------------- 364 (428)
T ss_pred ECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-------------------------
Confidence 211 0111223343444456677899999988766543 35777776432110
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+.... .....+.++||++.|+... .+..|+++|+..++..... ...+.+...+|||-.
T Consensus 365 ----------~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 365 ----------QLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred ----------EccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 000000 0012355788888776533 2467999999877653333 344567788888753
No 269
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.51 E-value=6.8e-05 Score=67.71 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=111.1
Q ss_pred EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEE
Q 022074 55 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 134 (303)
Q Consensus 55 ~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~ 134 (303)
++-..+|.|.+.|..+.+...++......-..+.+++ ++++++.++.||.|.++|+.. .+.+..+.. ...-..+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~----~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLAT----GKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTS----SSEEEEEE--SSEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCc----ccEEEEEec-CCCcceE
Confidence 4556789999999999988877765433323456754 577888888999999999863 333444322 2335678
Q ss_pred EeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEe
Q 022074 135 DSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213 (303)
Q Consensus 135 ~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (303)
+++++|+++++++ ..+.+.++|.+.++......... .+... ... + ..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~-----------~~~~~-----~~~------------R-v~--- 131 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG-----------MPVDG-----PES------------R-VA--- 131 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E-----------E-TTT-----S----------------EE---
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeeccccc-----------ccccc-----cCC------------C-ce---
Confidence 8999999987665 68999999987644322111000 00000 000 0 00
Q ss_pred eeeeeeCCCe-EEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCCC
Q 022074 214 FSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 214 ~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~~ 284 (303)
....++... ++++--+.+.|.+-|....+.+. ....-.....+..|+|+++++ +++-....+-++|.+..
T Consensus 132 -aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 132 -AIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp -EEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred -eEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 011234445 44555556899999987654332 222344578899999999975 44566778888886643
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=0.00063 Score=59.10 Aligned_cols=252 Identities=14% Similarity=0.153 Sum_probs=138.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCC--CceEEE--EecccCCeEEEEEccCCCcEEEEecC-CCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEA--NKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSD-DNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~--~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~ 107 (303)
-.+.....=|+|++++++|.++-.+ |.|--|..+. |.+... ......+-+.++.. ++++.++++.. .|.|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEE
Confidence 3455567789999999999998654 6677776654 554321 11122334777884 56778888864 67999
Q ss_pred EEcCccccCCCccceeecccccC----------eEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeee
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEG----------ITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWD 176 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~ 176 (303)
++.++.......++. +..|.+. +.+..+.|+++++++.. .--.|.+|++............. .-..-
T Consensus 115 v~p~~~dG~l~~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~G 192 (346)
T COG2706 115 VYPLQADGSLQPVVQ-VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAG 192 (346)
T ss_pred EEEcccCCcccccee-eeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCC
Confidence 998753211111211 1224333 78888999999988766 34678899987433222111111 11111
Q ss_pred ceeeeCCCCCccccCCC--CCcceEE--ecc-cceeeeEE------------EeeeeeeeCCCeEEEEEe-CCCeEEEEE
Q 022074 177 YRWMDYPPQARDLKHPC--DQSVATY--KGH-SVLRTLIR------------CHFSPVYSTGQKYIYTGS-HDSCVYVYD 238 (303)
Q Consensus 177 ~~~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~------------~~~~~~~s~~~~~latg~-~dg~i~iwd 238 (303)
.+.+.+.|+.+..-..+ ...+..+ +.. .....+-. .......+++|++|.+.. ....|.++.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 23334444333211100 1111111 110 00000000 001122578999998874 334788887
Q ss_pred CCC--CeE--EEEeecCCCCeEEEEECCCCCeEEEEeCC-CCEEEeecCCCCccCCC
Q 022074 239 LVS--GEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 239 ~~~--~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~D-g~i~~Wd~~~~~~~~~~ 290 (303)
+.. +++ +.....+.....+..|+|++++|+.+.+| .++.++.....-++...
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 653 332 22223344457899999999998888875 57889987655444433
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.8e-07 Score=78.09 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=95.5
Q ss_pred CCccc------ceEEEEEcCCCCEEEEeeCCCeEEEEECCCC----ceEEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 36 GGYSF------GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 36 ~~~~~------~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
+||.+ -|+++.|...++.+..|...|.|...|++.+ .......-|...|+++....-+...|.+.+.+|+
T Consensus 243 tg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 243 TGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred cccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc
Confidence 56654 4777888888999999999999999999876 3344556788999999775435678888999999
Q ss_pred EEEEcCccccCCCccceeecccccCeE--EEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGIT--FIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
|++||.|... .+.-+..+.||...-. -+.+.++...++++|.|-..|||.++..
T Consensus 323 ikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 323 IKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 9999998432 2234567888876433 3345677778999999999999998853
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=8.2e-07 Score=82.87 Aligned_cols=203 Identities=24% Similarity=0.373 Sum_probs=133.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC--CeEEEEEccC--CCcEEEEecCCCeEEEEcCcccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS--DVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~--~v~~l~~~~~--~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+++.+++.+|.|+-++.++.-| +.+.|+...-...++..|.. .|-.+.|++. .+..+++-+.. .-.+|.+....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCC
Confidence 4578899999999999999888 67788876544444555543 5677788642 34456555544 44578864211
Q ss_pred CCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.....-.+.||..+++.+.|.+.. ..+++++.|..+-.||+|..... .+.+...
T Consensus 103 -~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--------~ys~~~w---------------- 157 (1081)
T KOG0309|consen 103 -SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--------FYSTSSW---------------- 157 (1081)
T ss_pred -ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--------eeeeecc----------------
Confidence 112223456889999999998754 46899999999999999864321 1111100
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEeC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSSW 272 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s~ 272 (303)
... ...++ ++.....+.+.+..+.|++||.+.|. .+..+++|...|+.++|+.-. ..+.+.+.
T Consensus 158 ------~s~---asqVk------wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 158 ------RSA---ASQVK------WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ------ccc---Cceee------ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence 000 00011 11111224445567789999998774 588899999999999997643 46888999
Q ss_pred CCCEEEeecCCC
Q 022074 273 DGDVVRWEFPGN 284 (303)
Q Consensus 273 Dg~i~~Wd~~~~ 284 (303)
|++++.|+-...
T Consensus 223 d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 223 DGTVKFWDYSKS 234 (1081)
T ss_pred CCceeeeccccc
Confidence 999999997543
No 273
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=3.2e-06 Score=75.50 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=120.8
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-------------------------------C----
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-------------------------------G---- 118 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-------------------------------~---- 118 (303)
..++..|.+.|+.|.|+. .++.++|++.|..|.+||.-..... +
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 346778999999999974 5889999999999999985211000 0
Q ss_pred ---------ccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcc--cccCccceeeeceeeeCCCCC
Q 022074 119 ---------KPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNAS--CNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 119 ---------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.....+..|.+.|..++.-|+. ..|+|+|.|+.++-+|+|...+... |...........-.+...|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 0012234477778777777755 4488999999999999886533222 211111100000011111111
Q ss_pred c-cccCC-CCCcceE-----------------EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC--C---
Q 022074 187 R-DLKHP-CDQSVAT-----------------YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G--- 242 (303)
Q Consensus 187 ~-~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~--~--- 242 (303)
. .+... .++.... +-.+.....-.......+|+.++..|.+...|-.|+++...- |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 1 11111 1111111 111111111111122346887777788888888999995432 2
Q ss_pred -------eEEEE-eecCCC--CeEEEE-ECCCCCeEEEEeCCCCEEEeecCC
Q 022074 243 -------EQVAA-LKYHTS--PVRDCS-WHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 243 -------~~~~~-~~~h~~--~I~~v~-~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..+.. +++|.. .|..+- |-|...+++|||+-|.|-+|+-.+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 22333 788864 466665 568889999999999999999654
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=9.6e-05 Score=67.30 Aligned_cols=196 Identities=13% Similarity=0.214 Sum_probs=117.5
Q ss_pred cccceEEEEEcCCCC--EEEEe-----eCCCeEEEEECCCCceE-----EEEecccCCeEEEEEccCCCcEEEEecC---
Q 022074 38 YSFGIFSLKFSTDGR--ELVAG-----SSDDCIYVYDLEANKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSD--- 102 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~--~l~sg-----s~Dg~v~lwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~s~--- 102 (303)
|..+|....+||.+. .+++- |.=+.||||.......- ..+... .=..+.|++...-+|+-++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka--dkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA--DKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc--ceeEEEeccCCceEEEEEEEeec
Confidence 456788888887533 44442 34447999977632211 111111 12244565433223332221
Q ss_pred --------CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccc
Q 022074 103 --------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 103 --------dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
+.++++.++. +.....-....++|.++.|+++++.|+.+. .=.++-|+|++....
T Consensus 242 ktn~SYYGEq~Lyll~t~-----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---------- 306 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ-----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---------- 306 (566)
T ss_pred CCCccccccceEEEEEec-----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe----------
Confidence 2355665542 111112222467899999999998886544 346778888863210
Q ss_pred eeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEEEEee
Q 022074 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~ 249 (303)
.+++...+ ...-|+|.|.+++.+| -.|.+-|||..+.+++..++
T Consensus 307 -------~df~egpR--------------------------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 307 -------FDFPEGPR--------------------------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred -------EeCCCCCc--------------------------cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 01111100 0122677788888766 57889999999998888887
Q ss_pred cCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGNG 285 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~ 285 (303)
.- .-+-++|+|||++++|+.. |+.+++|+..+..
T Consensus 354 a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 354 AA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 54 4577899999999988876 6889999987653
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.5e-05 Score=74.44 Aligned_cols=223 Identities=10% Similarity=0.121 Sum_probs=129.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---------------EEEEecccCCeEEEEEccCCCcEEEEecCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDN 104 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg 104 (303)
....|++|+.+..++++|+.||.+++..+.+... -.++.+|++.|..+.|+ ++.+.|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCc
Confidence 4588999999999999999999999998765431 12467899999999996 5567788889999
Q ss_pred eEEEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 105 LCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 105 ~v~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
.|.+|=+.- +.-.... .....-|.+++|..+|..+.....||.|.+=.+..-. +....+ .... ...+.+
T Consensus 94 lIiVWmlyk----gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeL--kg~~--l~hv~w 164 (1189)
T KOG2041|consen 94 LIIVWMLYK----GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKEL--KGQL--LAHVLW 164 (1189)
T ss_pred eEEEEeeec----ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhc--chhe--ccceee
Confidence 999997631 1111111 1123447788898899888877777776553322100 000000 0000 000111
Q ss_pred CCCCccccCCC-------------------CCcceEEecc-c-ceeeeEEEeee--e--eeeCCCeEEEEEeCCCeEEEE
Q 022074 183 PPQARDLKHPC-------------------DQSVATYKGH-S-VLRTLIRCHFS--P--VYSTGQKYIYTGSHDSCVYVY 237 (303)
Q Consensus 183 ~~~~~~~~~~~-------------------~~~~~~~~~~-~-~~~~~~~~~~~--~--~~s~~~~~latg~~dg~i~iw 237 (303)
+++.+.+.... ..+....+|. . ....+...++. + ...|+...||.+-..|.+.|.
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 11111100000 0000000000 0 00011111111 1 124688899999999999988
Q ss_pred ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 238 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 238 d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
.-.+...-..+. ....|....|+|+|.+||.++.|
T Consensus 245 R~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 245 RSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 765544322333 22678999999999999998865
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.36 E-value=0.00013 Score=65.50 Aligned_cols=187 Identities=17% Similarity=0.231 Sum_probs=121.5
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceEEEEec------cc--CCe---EEEE-EccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 48 STDGRELVAGSSDDCIYVYDLEANKLSLRILA------HT--SDV---NTVC-FGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 48 s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~------h~--~~v---~~l~-~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+.||++++- +.-|.|.+||..+..+...-.+ .+ ..+ .-+. |+..++++++..|. |.+.+.+.-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~--- 349 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW--- 349 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC---
Confidence 346877664 4667899999988765432111 01 111 1111 44456788887774 566665421
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCC-cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.+ -..-.+|...|....+..+++-++.|..|+ .+-++|.+.....
T Consensus 350 -~~--~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------------------------------- 395 (668)
T COG4946 350 -DG--YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------------------------------- 395 (668)
T ss_pred -CC--eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-------------------------------
Confidence 11 112346777898888888888899999999 9999997642210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.+. +.-.+....+++|++++.+.....|.+.|+++|+....=+.-.+-|++.+|||+++++|-+=-+|
T Consensus 396 ----r~e~~------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 396 ----RIEKD------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred ----EeeCC------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 00000 00011223467899999999999999999999985322234457899999999999999776654
Q ss_pred ----CEEEeecCC
Q 022074 275 ----DVVRWEFPG 283 (303)
Q Consensus 275 ----~i~~Wd~~~ 283 (303)
.|+++|..+
T Consensus 466 y~tq~Iklydm~~ 478 (668)
T COG4946 466 YYTQSIKLYDMDG 478 (668)
T ss_pred eeeeeEEEEecCC
Confidence 678888765
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=3.2e-06 Score=69.99 Aligned_cols=93 Identities=23% Similarity=0.401 Sum_probs=70.9
Q ss_pred EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CC
Q 022074 63 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 141 (303)
Q Consensus 63 v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 141 (303)
.+.|+++..+...........|.+++-+|...+++++|+.||.+-+||.|.. ..+...+..|...++-+.|+|. +.
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCch
Confidence 4556555443322222233458999988877889999999999999998843 4566778889999999999884 56
Q ss_pred EEEEEeCCCcEEEEEcc
Q 022074 142 YLISNGKDQAIKLWDIR 158 (303)
Q Consensus 142 ~l~s~~~D~~v~lWdl~ 158 (303)
.|++++.||.+--||-.
T Consensus 238 ~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAS 254 (319)
T ss_pred heeEecCCCcEEEEcCC
Confidence 79999999999999965
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.9e-06 Score=78.06 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=110.9
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-Cc--cceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.+.+|...|..++.- ++.+-|+++++|++|++|.++..... +. ..-+++.|..+|..+.|-.+-++++++ |+.+
T Consensus 730 nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 456788888888663 45678999999999999998742211 11 222467899999999887776677655 8999
Q ss_pred EEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEE-EeCC
Q 022074 153 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHD 231 (303)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat-g~~d 231 (303)
.+||.=......+. +++.+ . +.. ..++|.- +.+...+.. ++.+
T Consensus 807 HlWDPFigr~Laq~-------~dapk---------------~-------~a~---~~ikcl~----nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQM-------EDAPK---------------E-------GAG---GNIKCLE----NVDRHILIAGCSAE 850 (1034)
T ss_pred eeecccccchhHhh-------hcCcc---------------c-------CCC---ceeEecc----cCcchheeeeccch
Confidence 99995221111000 00000 0 000 0111111 112334444 4789
Q ss_pred CeEEEEECCCCeEEEEee-----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 232 SCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~-----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+++++|.+..+-..+++ +...-+.+++.-+.|+++|.+=.+|.|..-|...
T Consensus 851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 999999999887665554 3445688999999999999999999999888653
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.32 E-value=1.7e-06 Score=75.49 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=73.9
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESG 94 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 94 (303)
+|+..|+++.- +...-.-||-.-++.++++||+++|+++..|+.||+-..+.-.....+ .+|+..|..++..+ +
T Consensus 131 ~~~~di~s~~~---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 131 VYSFDILSADS---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--N 205 (390)
T ss_pred ceeeeeecccc---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--C
Confidence 46667777633 222233799999999999999999999999999999877665444443 47999999999854 4
Q ss_pred cEEEEecCCCeEEEEcCcc
Q 022074 95 HLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~ 113 (303)
..|+|+|.|++|++||++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred ceeeecCCCCcEEEEeccc
Confidence 5689999999999999863
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.30 E-value=0.00028 Score=71.99 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=118.6
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEec-cc-------------CCeEEEEEccCCCcEEEEecCC
Q 022074 39 SFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILA-HT-------------SDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 39 ~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~-------------~~v~~l~~~~~~~~~l~s~s~d 103 (303)
.++ ..++++++ |+.+++-+..+.|+++|.... ....+.. .. ..-..+++.++.+.++++-..+
T Consensus 568 ~~P-~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 568 KFP-GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCC-ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 444 46888874 566777777888999998654 3322222 10 1235677754433344444556
Q ss_pred CeEEEEcCccccCCCccceeec----------cc-------ccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLM----------GH-------LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~----------~h-------~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+.|+.+|.... .+..+. +. -..-..+++++ ++.++++.+.++.|++||.......
T Consensus 646 ~~Ir~id~~~~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-- 718 (1057)
T PLN02919 646 HALREIDFVNE-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-- 718 (1057)
T ss_pred ceEEEEecCCC-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE--
Confidence 78998886421 111111 00 01224677888 5667788888999999997532100
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCCCeE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~ 244 (303)
.+. ...... ...+...............++++++ ++++.+.++.|++||+.++..
T Consensus 719 --------~~~-------G~G~~~---------~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 719 --------VFS-------GDGYER---------NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred --------EEe-------cCCccc---------cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 000 000000 0000000000000111234667776 555667789999999987653
Q ss_pred EEEee-------------c--------CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 245 VAALK-------------Y--------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 245 ~~~~~-------------~--------h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
..... . .-.....++++++|+++++-..++.|++||..+.
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 21110 0 0112468999999999999999999999998643
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.23 E-value=0.00043 Score=62.22 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=91.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCC-eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg-~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
-||.++|.=..+..+++-++.|..|| .+-|+|..++. .+++...-+.|.++..+ ++++.++.+.....+-+.|+..
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididn- 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDN- 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecC-
Confidence 58999999999999988999999999 89999998886 34566667889999986 4688888888777887778753
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEE----EeCCCcEEEEEccc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLIS----NGKDQAIKLWDIRK 159 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~~D~~v~lWdl~~ 159 (303)
+.+.-.-....+-++.++++++++.+|- |-....|+++|+..
T Consensus 433 ---gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 433 ---GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ---CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 2222222334456889999999998875 44567899999865
No 282
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=2.8e-05 Score=70.99 Aligned_cols=117 Identities=14% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|-.+|.++.++-+-..|.+++.|..+-.|+.+..+....+......+..++++++ +..+++|+. +|++||++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D-~~~l~~as~--~ik~~~~~--- 172 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD-GKILLTASR--QIKVLDIE--- 172 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC-CCEEEeccc--eEEEEEcc---
Confidence 578899999999999999999999999999999999998888888889999999765 788888885 89999986
Q ss_pred CCCccceeecccccCeEEEEeCCC-----CCEEEE-EeCCCcEEEEEccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGD-----GRYLIS-NGKDQAIKLWDIRK 159 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s-~~~D~~v~lWdl~~ 159 (303)
+.+....|.||...|.++.|-.+ |.++++ ...+.-+.+|-++.
T Consensus 173 -~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 173 -TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 55677889999999999888655 666655 44678888887664
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.1e-05 Score=65.32 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.+|..-|..++|||..+ .+..++-+.+|.|.|+++.........+ ..+.+++|.-++.+.+..|..+|.|.+||.|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 57888999999999776 7888999999999999999877777777 67899999777788999999999999999873
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.13 E-value=0.0014 Score=66.04 Aligned_cols=198 Identities=16% Similarity=0.236 Sum_probs=123.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEE----ECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc-
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVY----DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR- 112 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lw----d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~- 112 (303)
-...|.++.+-++...++.+..+|.|.+. +..+.... ..-.-+.+|.+.+|+|+ .++|+.++.++++.+-...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPD-EELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccc
Confidence 34679999999999999999999999999 55444322 23345679999999865 6788888888888764311
Q ss_pred -----------ccc---------------CC---Ccc--------------ceeecccccCeEEEEeCCCCCEEEEEeC-
Q 022074 113 -----------CLN---------------VK---GKP--------------AGVLMGHLEGITFIDSRGDGRYLISNGK- 148 (303)
Q Consensus 113 -----------~~~---------------~~---~~~--------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~- 148 (303)
... .. ++. ...+. +.+.-..++|..||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 000 00 000 00111 2334557889999999988775
Q ss_pred ---C--CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 149 ---D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 149 ---D--~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
+ +.+|+|+-.. ...... + .+..+ .-...+.|.|.
T Consensus 231 ~~~~~~R~iRVy~ReG-~L~stS---------------------------E-~v~gL------------e~~l~WrPsG~ 269 (928)
T PF04762_consen 231 PETGSRRVIRVYSREG-ELQSTS---------------------------E-PVDGL------------EGALSWRPSGN 269 (928)
T ss_pred cCCCceeEEEEECCCc-eEEecc---------------------------c-cCCCc------------cCCccCCCCCC
Confidence 2 5788887421 100000 0 00000 00122456777
Q ss_pred EEEEEeC---CCeEEEEECCCCeEEEEee----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 224 YIYTGSH---DSCVYVYDLVSGEQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 224 ~latg~~---dg~i~iwd~~~~~~~~~~~----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++|+.-. ...|.+|. ++|-.-..|. .....|..++||+|+..||..-.|. +++|..
T Consensus 270 lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 7777542 34455554 5665544443 3356899999999999999987665 999974
No 285
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.10 E-value=0.002 Score=57.78 Aligned_cols=184 Identities=19% Similarity=0.265 Sum_probs=103.1
Q ss_pred cceEEEEEcCCCCEEEEee-CCCeEEEEECCCCc--eEE--EE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 40 FGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK--LSL--RI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~--~~~--~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
....++.|+|+|+++++.. ....|++|+++... +.. .+ .....+-..+.|+++.....+....+++|.++++..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 3468899999999888864 23469999997765 322 12 234457789999765444455667788999998651
Q ss_pred ccCCCccceeec----ccc--cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 114 LNVKGKPAGVLM----GHL--EGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 114 ~~~~~~~~~~~~----~h~--~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
............ +.. .....+.++|+|++|..+. ...+|-+|++........
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~--------------------- 282 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT--------------------- 282 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE---------------------
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE---------------------
Confidence 111111111111 111 2466788999999876655 577899998843110000
Q ss_pred ccccCCCCCcceEEe-cccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEEC--CCCeEEEEee-cCCCCeEEEEE
Q 022074 187 RDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSGEQVAALK-YHTSPVRDCSW 260 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~--~~~~~~~~~~-~h~~~I~~v~~ 260 (303)
.+.... +... .....+++++++|++++ .++.|.+|++ ++|.+...-. ..-....||.|
T Consensus 283 ---------~~~~~~~~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 283 ---------LVQTVPTGGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ---------EEEEEEESSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ---------EEEEEeCCCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 000000 0000 11223678999988876 6778999976 5776533321 22345666665
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.07 E-value=4e-05 Score=65.20 Aligned_cols=124 Identities=21% Similarity=0.317 Sum_probs=87.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEeccc-----CCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
++|..-|.+++|+.|.+.++++ .|=.|.+|.+.--... .-+.+|+ ..++...|+|..-++|.-.+..|+|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 6899999999999999988876 4667999987643222 2234454 35677789887677787888899999
Q ss_pred EEcCccccCCCcccee------------ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 108 VWDRRCLNVKGKPAGV------------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
+-|+|....-..+... +.+-..++..+.|+++|+|+++-.. -+|++||++..+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998732111111111 1223456777889999999988765 789999998643
No 287
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.06 E-value=0.0039 Score=55.63 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=61.7
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---------CCCeEEEEcCccccCCCccceeecc-----
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---------DDNLCKVWDRRCLNVKGKPAGVLMG----- 126 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~lWd~~~~~~~~~~~~~~~~----- 126 (303)
++|.+.|..+++....+..-..+- .+ ++++...+.++.+ .+..|.+||..... ....+.-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----PIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----EEeEEccCCCch
Confidence 789999999988766555322222 23 6665444444555 58899999986432 2222211
Q ss_pred --cccCeEEEEeCCCCCEEEEEe-C-CCcEEEEEcccccC
Q 022074 127 --HLEGITFIDSRGDGRYLISNG-K-DQAIKLWDIRKMSS 162 (303)
Q Consensus 127 --h~~~v~~~~~~~~~~~l~s~~-~-D~~v~lWdl~~~~~ 162 (303)
....-..++++++|++|+... . +..|-+.|+...+.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 112233567899999988766 4 79999999986543
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=5.3e-06 Score=79.15 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=80.6
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC-eEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~lWd~~~~~ 115 (303)
-|+....|++|+.+.++|++|+..|.|++|++.+|........|...|+.+..+.+...+|.++++.. -..+|+...
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-- 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-- 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc--
Confidence 45578999999999999999999999999999999988888899999999987544333444444444 567999753
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
...+...| ..-.++.|+..-..-+.|..-....+||+..
T Consensus 1177 -~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1177 -TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred -ccCccccc----cccceeehhhhHHHHHhcccccceEEEeccc
Confidence 22233233 2234555655432233344446788999865
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.00045 Score=65.48 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=136.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC-----------CcEEEEecCCCeEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----------GHLIYSGSDDNLCKV 108 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~l~s~s~dg~v~l 108 (303)
....+++|+|.|- ++-| .-..|.+.|..+-+.+..+..|...|+.+.|.|.. --+++++.-.|.|.+
T Consensus 16 sN~~A~Dw~~~GL-iAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSGL-IAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccce-EEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3467889999873 3334 44569999999988888888899999999996531 125778888999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEe---CCCC-CEEEEEeCCCcEEEEEcccccCCcccccC------ccceeeece
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDS---RGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLG------FRSYEWDYR 178 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~------~~~~~~~~~ 178 (303)
||.. ....+..+..|.+++-.+.| .++. ..|+.-..-..+-+|+........+.... ++...|+.+
T Consensus 94 ~d~~----~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFV----LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEeh----hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9975 22334445556666544433 2333 45667677788899977654433332211 111111111
Q ss_pred eeeC----------------CCCC--ccc--cCCCCC----cceEEecccceee-----eEEEeeeeeeeCCCeEEEEEe
Q 022074 179 WMDY----------------PPQA--RDL--KHPCDQ----SVATYKGHSVLRT-----LIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 179 ~~~~----------------~~~~--~~~--~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~latg~ 229 (303)
.+.+ +|.. +.+ ...+.. ...+..|...... .+.....-.|+|.-+.++-..
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 1100 0100 000 000000 0000001000000 000000112444444444445
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~Wd~~ 282 (303)
--..+.++|++-...+....-..+.+.=+.|-|+++ .|.+.=.||.+.+|--+
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 567799999988888888776666667778888875 79999999999999754
No 290
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=5.4e-06 Score=76.49 Aligned_cols=203 Identities=13% Similarity=0.221 Sum_probs=122.4
Q ss_pred cceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCceE--EEEecccCCeEEEEEccCCCcEEEEec----CCCeEEEEcC
Q 022074 40 FGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s----~dg~v~lWd~ 111 (303)
+.+.|+++.-+.+ .+++|..+|.|-+-........ ....+|...+++++|++-+.+.|+.|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4578888775443 7889999999999877554322 234567788999999876667777663 3678899998
Q ss_pred ccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 112 RCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
...-...+....+.+ -.++..++.+..+.+++++|..-+.+.++|+|..... ++. + +++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~--~~s-v--------------nTk--- 196 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS--VSS-V--------------NTK--- 196 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh--hhh-h--------------hhh---
Confidence 532101011112222 3345556667778888999999999999999842110 000 0 000
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE-CCCCeE-EEEeecCC-----CCeEEEEECCC
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSGEQ-VAALKYHT-----SPVRDCSWHPS 263 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd-~~~~~~-~~~~~~h~-----~~I~~v~~sp~ 263 (303)
...|.. + .| |+ ..|+++ ..||.|.+|| ..+-+. +..+ .|. ..+..++|.|.
T Consensus 197 --------~vqG~t----V-----dp-~~--~nY~cs-~~dg~iAiwD~~rnienpl~~i-~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 197 --------YVQGIT----V-----DP-FS--PNYFCS-NSDGDIAIWDTYRNIENPLQII-LRNENKKPKQLFALAYCPT 254 (783)
T ss_pred --------hcccce----e-----cC-CC--CCceec-cccCceeeccchhhhccHHHHH-hhCCCCcccceeeEEeccC
Confidence 000000 0 01 22 335554 4599999999 333322 2111 222 24899999998
Q ss_pred CC-eEEEEeC-CCCEEEeecCCC
Q 022074 264 QP-MLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~-~las~s~-Dg~i~~Wd~~~~ 284 (303)
.+ ++++... .++|++.|+...
T Consensus 255 rtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CcchhhhhccCcceEEEeccccc
Confidence 65 4555444 478999997643
No 291
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.97 E-value=3e-05 Score=44.11 Aligned_cols=39 Identities=38% Similarity=0.655 Sum_probs=34.6
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
++.+..+..|...|+++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.92 E-value=0.0022 Score=53.78 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=71.9
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCC--eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce-eeccccc
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLE 129 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~ 129 (303)
.+.-++.|.+++++++..+... ...|... ++.+.+++ +++++++.+....|..|.+..... .... .+..-++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~a~t~D 204 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESE--YIENIYEAPTSD 204 (344)
T ss_pred ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccc--eeeeeEecccCC
Confidence 3666788888988888766443 3334443 77888864 588998999888999997752111 1111 2222334
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.=-+.+|+....++|++..||++.|||+|.+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 4456778888999999999999999999864
No 293
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.0003 Score=64.15 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=78.1
Q ss_pred ccceEEEEEcCCCCEEEEe--eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCcc
Q 022074 39 SFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRC 113 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sg--s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~ 113 (303)
++||+++.|+++|+.++++ =.=.++.|||++..- +. .--.+.=+++.|+| .+++++-++. .|.+-+||...
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~--df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF--DFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE--eCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence 5799999999999865553 345689999996653 22 22335567888975 6788776654 68999999752
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeC------CCcEEEEEccc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------DQAIKLWDIRK 159 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------D~~v~lWdl~~ 159 (303)
.+.+..+ ....-+-+.|+|||++|+|+.. |..++||+...
T Consensus 346 ----~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 346 ----RKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ----hhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 2223333 1233456689999999998775 89999998753
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.0011 Score=60.81 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=50.1
Q ss_pred eeeeCCCeEEEEE---eCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCC
Q 022074 216 PVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGN 284 (303)
Q Consensus 216 ~~~s~~~~~latg---~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~ 284 (303)
.-++|.|++++.+ |..|.+.++|....+. ......| ...+.+.|.|+|++++|++. |.--++|++++.
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 4478899998876 4678999999874332 1112234 35689999999999999886 566778998876
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.89 E-value=0.0046 Score=56.16 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=118.7
Q ss_pred cceEEEEEcCCCC--EEEE-----eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEe------c-----
Q 022074 40 FGIFSLKFSTDGR--ELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG------S----- 101 (303)
Q Consensus 40 ~~v~~l~~s~~g~--~l~s-----gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~------s----- 101 (303)
.+|..-+|+|.|+ .|+. .+.++.++||.+..+....+-.-..-.-..+.|++ .++.++.= +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeeccccee
Confidence 4577788888643 3333 35688899999986654322111111224556654 34433211 1
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeecee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 179 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (303)
....+.|++++ .+-+....+-.+.|..+.|.|.++.+++.+ .+.++-++|++.- . .+
T Consensus 253 gesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l-------~~---- 311 (561)
T COG5354 253 GESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----L-------RF---- 311 (561)
T ss_pred ccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-----e-------EE----
Confidence 12456677654 222333334567899999999888886655 6778888887631 0 00
Q ss_pred eeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEE-EEeecCCCCe
Q 022074 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQV-AALKYHTSPV 255 (303)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~-~~~~~h~~~I 255 (303)
.+|++.+ ..+.|||.+++++.++ ..|.|-+||...+-++ ..+.+. ..
T Consensus 312 -~~Pe~~r--------------------------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~ 362 (561)
T COG5354 312 -YFPEQKR--------------------------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NT 362 (561)
T ss_pred -ecCCccc--------------------------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--Cc
Confidence 0111110 1234777888888866 4678999998766543 366554 35
Q ss_pred EEEEECCCCCeEEEEeC------CCCEEEeecCCCCcc
Q 022074 256 RDCSWHPSQPMLVSSSW------DGDVVRWEFPGNGEA 287 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~~~ 287 (303)
.-+.||||++++-++-. |..+++||+.+....
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 67889999997666533 788999998776433
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.88 E-value=0.012 Score=49.92 Aligned_cols=186 Identities=18% Similarity=0.222 Sum_probs=107.7
Q ss_pred eEEEEEc-CCCCEEEEeeCCCeEEEEECCCCceEEEEec-----ccCCeEEEEEccCCCcEEEEecCC--------CeEE
Q 022074 42 IFSLKFS-TDGRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCK 107 (303)
Q Consensus 42 v~~l~~s-~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~d--------g~v~ 107 (303)
...+.+. ++ ..++.+..++ +.++|..+++....... .....+.+++.+ ++++.++.... |.|.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceE
Confidence 6677777 55 5556666666 56669988865433222 234678888864 57777766543 4566
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.++.. ++ ...........+.++++++++.| ++-+..+.|..+++........... .....+.
T Consensus 119 ~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~-- 181 (246)
T PF08450_consen 119 RIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR---------VFIDFPG-- 181 (246)
T ss_dssp EEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE---------EEEE-SS--
T ss_pred EECCC-----Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee---------eEEEcCC--
Confidence 66632 11 22222234456788999999866 5677788888888753221000000 0000000
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC-CCCC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP 265 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s-p~~~ 265 (303)
. . ...+ ...+..+|.+.++....+.|.++|.+ |+.+..+......+++++|. |+.+
T Consensus 182 -------~-~-g~pD-------------G~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 182 -------G-P-GYPD-------------GLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp -------S-S-CEEE-------------EEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred -------C-C-cCCC-------------cceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 0 0 0000 01234578888887889999999987 88888887665689999994 5655
Q ss_pred -eEEEE
Q 022074 266 -MLVSS 270 (303)
Q Consensus 266 -~las~ 270 (303)
+++|.
T Consensus 239 ~L~vTt 244 (246)
T PF08450_consen 239 TLYVTT 244 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 44443
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.86 E-value=7.7e-05 Score=68.61 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=55.0
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|+...|+.|++||.|.+||...+... +....-.++.++|||+|.+++.|++.|.+.+||.+-+
T Consensus 267 ~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 267 RSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5678899999999999999998766432 3345567899999999999999999999999997654
No 298
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.86 E-value=0.0022 Score=63.82 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=120.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc----ccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLN 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~----~~~ 115 (303)
..|.++.|..+.+.++.+..+|.|.+-|..+..... .-.-..+|.+.+|+++ .+.++-.+.++++.+-... ...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPD-EELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCC-CcEEEEEeCCcEEEEEeccccchhcc
Confidence 579999999999999999999999999888776432 3345678999999764 6788888877888653210 000
Q ss_pred C-------CC--------ccceeecc------------c---------ccCeEEEEeCCCCCEEEEEe----CC-CcEEE
Q 022074 116 V-------KG--------KPAGVLMG------------H---------LEGITFIDSRGDGRYLISNG----KD-QAIKL 154 (303)
Q Consensus 116 ~-------~~--------~~~~~~~~------------h---------~~~v~~~~~~~~~~~l~s~~----~D-~~v~l 154 (303)
. .. +....|.| + .+.-+.+.|..||.++++.. .+ +.+++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 00 00001111 0 11123477889999998732 24 89999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEE---eCC
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG---SHD 231 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg---~~d 231 (303)
||-. ...+.... ..+. .+. +..+-|.|.++++- .+|
T Consensus 227 ~drE-g~Lns~se----~~~~------------------l~~------------------~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 227 YDRE-GALNSTSE----PVEG------------------LQH------------------SLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred eccc-chhhcccC----cccc------------------ccc------------------ceeecCCCCeEeeeeecCCC
Confidence 9865 11110000 0000 000 01122445555552 345
Q ss_pred CeEEEEECCCCeEEE----EeecCCCCeEEEEECCCCCeEEE---EeCCCCEEEeecC
Q 022074 232 SCVYVYDLVSGEQVA----ALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~~~~~----~~~~h~~~I~~v~~sp~~~~las---~s~Dg~i~~Wd~~ 282 (303)
+.|.++. ++|-.-. .+.....+|..++|+.++..||. ......+++|...
T Consensus 266 ~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 6788886 3453322 22344556999999999999888 6666669999754
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.85 E-value=0.00019 Score=69.06 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=96.0
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---------CCeEEEEcCccccCCCc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~v~lWd~~~~~~~~~ 119 (303)
.+++.+.+|...|+|.|-|.++-+.++++..|.+.+.++.. .++.|++++. |..|++||+|-. +
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----r 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM----R 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhh----h
Confidence 46789999999999999999999999999999998888655 3678888874 667889998732 1
Q ss_pred cceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 120 PAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.+..+.-+.++ ..+.|.|. ...++.++.-|.+.+-|...... |+....+..++...+.
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~ 316 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN--------------------PPAGVKMVNPNGSGIS 316 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC--------------------CccceeEEccCCCcce
Confidence 22222223232 23334442 34567777778888887432111 1111111112211111
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.-.+|+++..+|.|..+|.|.+|--
T Consensus 317 ----------------~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 317 ----------------AFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ----------------eEEecCCCceEEEecccCcEeeecC
Confidence 1235778999999999999999973
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.83 E-value=0.00074 Score=62.32 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred EEEEECCCCceEE---EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC
Q 022074 63 IYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139 (303)
Q Consensus 63 v~lwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 139 (303)
-.+|+...++... +.......|.+.+++| +.+.|+.|..||+|.+||... ....+....-..+.++|+|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~------~~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTR------GVTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCC------CeeeeeeecccceEEEEcCC
Confidence 3677777665432 2335667899999976 467888999999999999642 12223334445678899999
Q ss_pred CCEEEEEeCCCcEEEEEccc
Q 022074 140 GRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 140 ~~~l~s~~~D~~v~lWdl~~ 159 (303)
|..++.|+.-|.+.+||+..
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 99999999999999999863
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00049 Score=65.89 Aligned_cols=108 Identities=13% Similarity=0.247 Sum_probs=77.4
Q ss_pred EEEcCCCCEEEEee----CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 45 LKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 45 l~~s~~g~~l~sgs----~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.+|+|....+++++ ..|.|.|| +++|....-+ ...-.+.++||+|. .-+|+.|=.-|.+.+|... ..+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~----~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTN----TTET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChH-HHHHhhccccceeEEEecC----Ccee
Confidence 57888888888876 46789888 3445422111 11113567999764 4467777778899999853 2233
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
......|..++..+.|+++|+.++|+..-|.|.+|....
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 344556999999999999999999999999999997653
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=7.6e-05 Score=66.38 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=116.5
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDI 157 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl 157 (303)
-|.+.|+.+.. ...+.+.+++.||.++.|....... ...+..+..|...+.++..+-++.++.|.+. |+.+|++|+
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isG-vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISG-VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccc-eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 36566666653 3467999999999999997431110 1123345567777888888889999999777 999999998
Q ss_pred ccccCCcccccCccc--eeeeceeeeCCCCCc-ccc--CCCCCcceEEecccc---eeeeEEEeeeee----eeCCCeEE
Q 022074 158 RKMSSNASCNLGFRS--YEWDYRWMDYPPQAR-DLK--HPCDQSVATYKGHSV---LRTLIRCHFSPV----YSTGQKYI 225 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~s~~~~~l 225 (303)
..........+.+.+ .+|.. .+.+.. .+. ......+...++... ...-...|++|+ +.+-+..+
T Consensus 84 En~DminmiKL~~lPg~a~wv~----skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVT----SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred eccchhhhcccccCCCceEEec----CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 764433222222111 11111 000000 000 001111222211110 001112233332 34556677
Q ss_pred EEEeCCCeEEEEECCC-Ce-----E---------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 226 YTGSHDSCVYVYDLVS-GE-----Q---------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 226 atg~~dg~i~iwd~~~-~~-----~---------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++....|-|.-|..+- .+ . +..+........++.|+|++..+++-+.|+.++++.+.+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 8888889999998762 11 1 1122233457899999999999999999999999998765
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.76 E-value=0.021 Score=57.65 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=76.1
Q ss_pred cccceEEEEEcCCCCEEEEeeC---C---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEE
Q 022074 38 YSFGIFSLKFSTDGRELVAGSS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKV 108 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~---D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~l 108 (303)
+...-..|+|..||+++|+.+. + ..+|||+-+ |.+......-.+--.+++|. |+++++++... ...|..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEE
Confidence 4456788999999999999874 3 478999876 54443333333334577895 56889988764 456677
Q ss_pred EcCccccCCCccceeec----ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 109 WDRRCLNVKGKPAGVLM----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
|... +-..+.|. .....|..+.|+.++..|+.--.|. |.+|-..
T Consensus 286 fErN-----GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 286 FERN-----GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred EecC-----CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 7632 22222221 2345688999999999888866555 9999764
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.76 E-value=0.011 Score=53.59 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=107.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
.+..+++++.+|.+.-+|..+|+..-+..-.......... .+..++.++.++.+..+|....+...+. .+ .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~--~~---~~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRA--KL---SS 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeee--cc---Cc
Confidence 3678999999999999999999865443322221222222 2456777888999999997533221110 01 01
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC--CCccccCCCCCcceEEe---ccc
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP--QARDLKHPCDQSVATYK---GHS 204 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 204 (303)
.+.+.... .+..++.+..++.+..||.+..+.............. .....|. ....+.......+..++ |..
T Consensus 136 ~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~--~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL--RGSASPVIADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee--cCCCCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 11110001 2346667778899999998754433222111000000 0000000 00000000111111111 110
Q ss_pred ceeee-------------EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 205 VLRTL-------------IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 205 ~~~~~-------------~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
..... .....+|.. .+..+..++.+|.++.+|.++|+.+-..+. .. ... ....+..+..++
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~--p~~~~~~vyv~~ 286 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQG--PAVDDNRLYVTD 286 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccC--ceEeCCEEEEEC
Confidence 00000 000112222 234677788899999999999987655431 11 111 122456777777
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.||.+..+|...
T Consensus 287 ~~G~l~~~d~~t 298 (377)
T TIGR03300 287 ADGVVVALDRRS 298 (377)
T ss_pred CCCeEEEEECCC
Confidence 899999988754
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.75 E-value=0.0053 Score=55.67 Aligned_cols=175 Identities=18% Similarity=0.135 Sum_probs=100.7
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEec-ccC---C------e-EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILA-HTS---D------V-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~---~------v-~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
..++.+..+|.+.-+|+.+|+..-+... ... . + ....+ .+..++.++.+|.++.+|.+..+.
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~---- 263 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRV---- 263 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcE----
Confidence 4678888899999999999875432211 000 0 0 01111 134677788899999999753221
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
.-... . ...... ...+..++.++.|+.+..+|....+.. |.... +
T Consensus 264 ~W~~~-~-~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~-----------W~~~~--------------------~ 308 (377)
T TIGR03300 264 LWKRD-A-SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSEL-----------WKNDE--------------------L 308 (377)
T ss_pred EEeec-c-CCccCc--eEeCCEEEEECCCCeEEEEECCCCcEE-----------Ecccc--------------------c
Confidence 11110 0 111111 124567888888999999997543211 11000 0
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
.+ ....+|.. .+..+++++.+|.++++|..+|+.+..++.+..++..--.-.++ .|..++.||.|..|
T Consensus 309 ~~--------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 309 KY--------RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred cC--------CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 00 00011221 24578889999999999999999988887665443322222233 47788889998865
No 306
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0072 Score=52.66 Aligned_cols=194 Identities=14% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCeEEEEECCCC--ceE-EEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCcc--ceeecccccCe
Q 022074 60 DDCIYVYDLEAN--KLS-LRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP--AGVLMGHLEGI 131 (303)
Q Consensus 60 Dg~v~lwd~~~~--~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~--~~~~~~h~~~v 131 (303)
+.-|++|++.+. ++. .+...+.+..+-++|+++ .+.|.++.+ +|.|.-|.+... .++. +.....-..+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~--~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPD--DGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCC--CCeEEEeeccccCCCCC
Confidence 345999988743 221 234456678889999754 556666654 466666654311 1111 11111112233
Q ss_pred EEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 132 TFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
+.++++++++++++++. -+.|.++-++..-..... . ..+.+.... .| ......
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v------------~~~~h~g~~------p~-~rQ~~~ 145 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV-------V------------QVVKHTGSG------PH-ERQESP 145 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccc-------e------------eeeecCCCC------CC-ccccCC
Confidence 77889999999888775 578888876542110000 0 000000000 00 000111
Q ss_pred EEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEE----EeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecCCC
Q 022074 211 RCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVA----ALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 211 ~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~----~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~~ 284 (303)
.+|+ ..+.|++++|++.. ..-+|.+|++..|++.. .+ ....-...+.|+|++++.-... -++++.+|+....
T Consensus 146 h~H~-a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 146 HVHS-ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred ccce-eeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 1222 24678998888864 34469999999776422 22 2234568999999999755544 4899999987654
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0038 Score=59.61 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=83.9
Q ss_pred CCcccceEEEEEcCC-------------CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC----CCcEEE
Q 022074 36 GGYSFGIFSLKFSTD-------------GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE----SGHLIY 98 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-------------g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~ 98 (303)
+.|++.|+-..+.-+ |+++++||.||+|.|-.+.+++...++ ....++..++++|+ ..++++
T Consensus 55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv 133 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFV 133 (846)
T ss_pred ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhhee
Confidence 678888888777766 999999999999999999888765433 44568899999765 356899
Q ss_pred EecCCCeEEEEcCccccCCCccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+|+.-| +.++..+-. +.... .+..-.++|.++.|. |+++|=++ |-.|++||+..
T Consensus 134 ~GG~ag-lvL~er~wl---gnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~ 188 (846)
T KOG2066|consen 134 SGGMAG-LVLSERNWL---GNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPT 188 (846)
T ss_pred ecCcce-EEEehhhhh---cCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccc
Confidence 999988 888764311 11111 233344678888874 66777665 45579999864
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.69 E-value=0.0059 Score=51.26 Aligned_cols=196 Identities=18% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc-cceeeccc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGH 127 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~-~~~~~~~h 127 (303)
++++.+++++.++.++.||..+|+..-+.... +.+..... .. +..++.++.++.++.+|.+..+...+ ........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ec-ccccccccceeeeEecccCCcceeeeecccccccc
Confidence 35778888899999999999999876554432 22111112 12 34556666778999998653322111 00000000
Q ss_pred -ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccce
Q 022074 128 -LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 206 (303)
Q Consensus 128 -~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (303)
........+ .+..++.+..++.+..+|++..+....... ..+.... .+..+
T Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~------------~~~~~~~--------~~~~~------ 162 (238)
T PF13360_consen 111 GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPV------------GEPRGSS--------PISSF------ 162 (238)
T ss_dssp STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEES------------STT-SS----------EEEE------
T ss_pred ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeec------------CCCCCCc--------ceeee------
Confidence 011111222 266788888899999999875433221111 0000000 00000
Q ss_pred eeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 207 RTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 207 ~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
......+.+ .++ .+..++.++. +.+ |..+++.+-... ...+..+ ..+++..|+.++.++.+..||+...
T Consensus 163 ---~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 163 ---SDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ---TTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ---cccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 000011222 234 5566666664 566 999998663222 2222221 4567777777779999999998754
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.001 Score=62.69 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=135.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec--ccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+..-||+..|.-+.|+.+.+.|-++..+|.|.+|=+-.|.....+.. .++-|.+++|+. +++.+...-.||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEe
Confidence 34459999999999999999999999999999998887765433322 345678889965 477777777788776532
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc---cCCccccc---------C--ccceeee
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM---SSNASCNL---------G--FRSYEWD 176 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~---~~~~~~~~---------~--~~~~~~~ 176 (303)
++....-+ ..+.|. -...+.+++|.++++-+-..|.+.++|.... +...+|.. + ...+.|.
T Consensus 144 vdGNRIwg---KeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 144 VDGNRIWG---KELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred eccceecc---hhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 21100000 011110 0124557888888888888899999986531 11111100 0 1111121
Q ss_pred ce-eeeCCCCCccccCCCCCcceEEe-----cccceeeeEEEeeeeeeeCCCeEEEEEeCCC---------eEEEEECCC
Q 022074 177 YR-WMDYPPQARDLKHPCDQSVATYK-----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---------CVYVYDLVS 241 (303)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---------~i~iwd~~~ 241 (303)
.. ....+|+.+.+...-.+...-+. ....+...---.....++++|..||.+|.|. .|.++.. -
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~ 297 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-Y 297 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-c
Confidence 11 01112222222111111100000 0000000000011234678899999988643 4666654 4
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
|+.+.+++.....|++++|-..|-.+|-+- |+.|.+=+
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 677888888888999999988887666664 55555433
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0088 Score=57.67 Aligned_cols=196 Identities=13% Similarity=0.178 Sum_probs=115.2
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEecccCC-eEEEEEccCCCcEEEEecCCC-----eEEEEcCccccCCC
Q 022074 46 KFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG 118 (303)
Q Consensus 46 ~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg-----~v~lWd~~~~~~~~ 118 (303)
+|++++..++.|+.||.|.+++- +... .-+..+... |..+.. .+..+.|++.++|+ .+++||+.-...+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678889999999999877743 3322 345556555 444433 34446788777665 48999986332222
Q ss_pred cccee----eccc-----ccCeEEEEeCCCCCEEEEEeCCCcEEEEE--cccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 119 KPAGV----LMGH-----LEGITFIDSRGDGRYLISNGKDQAIKLWD--IRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 119 ~~~~~----~~~h-----~~~v~~~~~~~~~~~l~s~~~D~~v~lWd--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
.|... ...| ..++.+++++.+-..+|.|=.||.|.++. +.+.... .. .+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~--------------~~----- 166 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQ--------------DY----- 166 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ce--------------ee-----
Confidence 13222 1222 33577888888888889999999999983 2111100 00 00
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCe
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
.+....++. - ..+..+++.++-+.....|.+|.+....+ +..+..|..+++|.+|++..+.
T Consensus 167 --~~~~~~pIT----------g------L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 167 --SHRGKEPIT----------G------LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred --eccCCCCce----------e------eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc
Confidence 000000110 0 11222344433344456789999875442 5557788899999999998875
Q ss_pred EEEEeCCCCEEEeecCC
Q 022074 267 LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~ 283 (303)
++.|+. .-+.+++.++
T Consensus 229 fIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 229 FICAGS-EFLYFYDSDG 244 (933)
T ss_pred EEEecC-ceEEEEcCCC
Confidence 666553 4677887653
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=5.6e-05 Score=72.44 Aligned_cols=158 Identities=12% Similarity=0.245 Sum_probs=101.4
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC--c
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--A 151 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~--~ 151 (303)
+..+..|+..-+|++|+- ..+.|+.|+..|.|++++..++ .-.....+|..+|+-+..+.+|..+++.+.-. -
T Consensus 1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG----~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSG----SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCc----cccccccccccccccccccCCcceeeeeccccCch
Confidence 345667888889999964 5678899999999999997643 33456778999999998888998877765432 4
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
.-+|++.. ... ...++++.. .+ .|+..-++-+.|..-
T Consensus 1169 saLW~~~s---~~~------------------------------~~Hsf~ed~----~v------kFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1169 SALWDASS---TGG------------------------------PRHSFDEDK----AV------KFSNSLQFRALGTEA 1205 (1516)
T ss_pred HHHhcccc---ccC------------------------------ccccccccc----ee------ehhhhHHHHHhcccc
Confidence 66787653 111 111111111 01 122222222334444
Q ss_pred CeEEEEECCCCeEEEEe-e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 232 SCVYVYDLVSGEQVAAL-K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~-~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....+||+.++.++.++ . +.+..=+.+.|||+..+++--| .+||+..+
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR~~ 1257 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVRIP 1257 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc-----eeeeeccH
Confidence 56899999998765542 2 2233447888999998877544 57998754
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.57 E-value=0.0096 Score=54.17 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCC---------------eEEEEECCCCceEEEEecccCC--eE-EEEEccCCCcEEEEecC
Q 022074 41 GIFSLKFSTDGRELVAGSSDD---------------CIYVYDLEANKLSLRILAHTSD--VN-TVCFGDESGHLIYSGSD 102 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg---------------~v~lwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~s~ 102 (303)
-|+-+.|+|++++|.+=+.-. .+.+||..++.++..+...... .. -+.|+.+ +++++=- -
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~-D~y~ARv-v 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID-DKYVARV-V 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeec-chhhhhh-c
Confidence 388899999999999876433 4899999999887665544433 33 5566543 3444322 2
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC--CEEE-----EEeCCCcEEEEEcccccCCcccccCccceee
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLI-----SNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 175 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~-----s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~ 175 (303)
...++++++. .+....+...+ ...++....++|.+ ..|+ ..+.+..+++|.+..-....+.++ +
T Consensus 151 ~~sl~i~e~t-~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f----- 221 (561)
T COG5354 151 GSSLYIHEIT-DNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F----- 221 (561)
T ss_pred cCeEEEEecC-CccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E-----
Confidence 3468888852 22222233222 13556666777753 2233 255677777776642111111100 0
Q ss_pred eceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 176 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
.. +.+...++... . .+-+.....+..+..++ .+..+++++++....--. ....++|
T Consensus 222 k~----------------~~~qLkW~~~g--~-~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~i~V~-~~~~~pV 277 (561)
T COG5354 222 KV----------------SGVQLKWQVLG--K-YLLVLVMTHTKSNKSYF----GESNLYLLRITERSIPVE-KDLKDPV 277 (561)
T ss_pred ee----------------cccEEEEecCC--c-eEEEEEEEeeeccccee----ccceEEEEeeccccccee-ccccccc
Confidence 00 00000000000 0 00000000111122222 256789999875553222 2567899
Q ss_pred EEEEECCCCCeEE--EEeCCCCEEEeecCCC
Q 022074 256 RDCSWHPSQPMLV--SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 256 ~~v~~sp~~~~la--s~s~Dg~i~~Wd~~~~ 284 (303)
.+.+|+|+++.++ +|-.+-++.++|++++
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc
Confidence 9999999987554 4457888888888766
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.55 E-value=0.041 Score=46.65 Aligned_cols=192 Identities=15% Similarity=0.187 Sum_probs=107.2
Q ss_pred EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 44 SLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 44 ~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
+..|.+ +|..+.+--..+.|..|+..++.... ..... ...+++..+++ .++.+..++. .++|...... ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~-~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~~--~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG-PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGKV--TVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS-EEEEEEECTTS-EEEEEETTCE-EEEETTTTEE--EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC-CceEEEEccCC-EEEEEEcCce-EEEecCCCcE--EEEe
Confidence 467887 66666666678899999998886532 22222 56666653445 4445555444 4457642211 1111
Q ss_pred eec--c-cccCeEEEEeCCCCCEEEEEeCCC--------cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 123 VLM--G-HLEGITFIDSRGDGRYLISNGKDQ--------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 123 ~~~--~-h~~~v~~~~~~~~~~~l~s~~~D~--------~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
... . .....+.+.+.++|++.++..... .|..++.. .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~------------------------------- 124 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G------------------------------- 124 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-------------------------------
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-------------------------------
Confidence 111 1 223467788889998777765432 22222221 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE-EEeCCCeEEEEECCCC-e-E-----EEEeecCCCCeEEEEECCC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSG-E-Q-----VAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-tg~~dg~i~iwd~~~~-~-~-----~~~~~~h~~~I~~v~~sp~ 263 (303)
.+... ..-+.......++++++.|+ +-+..+.|+.+++... . . ...+..-.+..-.+++..+
T Consensus 125 ----~~~~~------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 125 ----KVTVV------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp ----EEEEE------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred ----eEEEE------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 00000 00011112345788887664 6678899999998532 2 1 1122222234788999999
Q ss_pred CCeEEEEeCCCCEEEeecCCC
Q 022074 264 QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++.++.-..+.|.+++..+.
T Consensus 195 G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp S-EEEEEETTTEEEEEETTSC
T ss_pred CCEEEEEcCCCEEEEECCCcc
Confidence 999888888899999997643
No 314
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.00033 Score=57.36 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEE--eCCCCEEEeecCCCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNG 285 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~--s~Dg~i~~Wd~~~~~ 285 (303)
+.+..++++||.||-|+++-.+.+....+|+ .++.....+..+++++.+ |.|..++.|++....
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 4578889999999999999888888888888 899999999999999999 999999999987654
No 315
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.42 E-value=0.00028 Score=39.84 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 67 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd 67 (303)
.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46788899999999999999999999999995
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0055 Score=58.58 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.+.|++++ ++.++-|+-+|.|++++....- .+...|... ...+.+++|||.||+|.+-.+.. ...
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~----~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFT----DDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-------ccCCceEEEecCCCcEEEeeccC----Ccc
Confidence 46666666 6789999999999999875542 334444332 34589999999999999876532 111
Q ss_pred ceeecccccCeEEEEeCCC-----CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 121 AGVLMGHLEGITFIDSRGD-----GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...+ .....+.+++++|+ .+.+++||.-| +.++.-+.+....+. ..+...+
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----------------------~l~~~eG 161 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----------------------VLSEGEG 161 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----------------------eeecCcc
Confidence 2222 23356777788776 56789998877 777754322110000 0000000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CeEEEEECCCCCeEEE
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVS 269 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~------~I~~v~~sp~~~~las 269 (303)
. +..+.| .|.++|=++.+| |++||..+++.+..++-... .-..+.|.+..++++.
T Consensus 162 ~------------I~~i~W------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 162 P------------IHSIKW------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred c------------eEEEEe------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 1 111222 367888888777 89999999988877653322 2346778777765554
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
-+ -+|++..++
T Consensus 223 W~--d~v~i~~I~ 233 (846)
T KOG2066|consen 223 WG--DSVKICSIK 233 (846)
T ss_pred cC--CeEEEEEEe
Confidence 33 478887776
No 317
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.13 Score=47.54 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=88.5
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.+-|.+... ...+... +......|+|+..+.++..+. +..|.++|+.. ++ ...+....+......|+|
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t----g~-~~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT----GK-KEKIASSQGMLVVSDVSK 242 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC----Cc-EEEEecCCCcEEeeEECC
Confidence 34444444333 2223333 355677897653333443332 45788888642 22 222323344455667999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
||+.++ +.+.++ .|.++|+..... ..++.... ....
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------------------~~LT~~~~------~d~~ 281 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------------------TQITNYPG------IDVN 281 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-----------------------------------EEcccCCC------ccCc
Confidence 997764 444444 444445432110 00000000 0123
Q ss_pred eeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-------C--CEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-------G--DVVRWEFPG 283 (303)
Q Consensus 216 ~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-------g--~i~~Wd~~~ 283 (303)
|.|+|||+.|+-.+. .+ .|++.|+.+++...... ... ....|||||+.|+-.+.. + .|.+-|+.+
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 558888877666553 22 68888998776533221 111 124899999987766554 2 456666654
Q ss_pred C
Q 022074 284 N 284 (303)
Q Consensus 284 ~ 284 (303)
.
T Consensus 359 g 359 (419)
T PRK04043 359 D 359 (419)
T ss_pred C
Confidence 3
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0025 Score=57.08 Aligned_cols=216 Identities=16% Similarity=0.099 Sum_probs=130.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEEEccCCC----cEEEEecCCCeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~s~dg~v~lWd 110 (303)
..|-..|.+++.+-+|-.+.+.+. |..++++|+.+-....-+.-. ..-..+.|....+ .+.++.-.++.+.++|
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 477788999999999999999777 999999999876544212111 1111222311122 3344455789999999
Q ss_pred CccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.+... .+...+. -|..+|..+...+.+..+++....|-|.-|..... .......+.|.+.
T Consensus 129 ~~~d~---~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-----~qfPr~~l~~~~K----------- 189 (558)
T KOG0882|consen 129 GFGDF---CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-----FQFPRTNLNFELK----------- 189 (558)
T ss_pred CcCCc---CccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-----ccCcccccccccc-----------
Confidence 76322 1222222 38889999999999999999999999999986531 0000001111111
Q ss_pred cCCCCCcceEEecccceeeeEEEe---eeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-----------------
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCH---FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK----------------- 249 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~----------------- 249 (303)
+. ..+....++. .+..|+|++..+++-+.|..|++++.++|+.+..+.
T Consensus 190 -~e-----------TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 190 -HE-----------TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred -cc-----------chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 00 0000001111 122367889999999999999999999986443332
Q ss_pred ---------------cCC-CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 ---------------YHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ---------------~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|. .+-+-+.|...+++|+-++.= -|++.++..+
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn 307 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN 307 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence 111 234456677788888877653 3556665543
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.11 E-value=0.07 Score=44.66 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred CCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec--ccccCeEEEE
Q 022074 60 DDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFID 135 (303)
Q Consensus 60 Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~--~h~~~v~~~~ 135 (303)
+|+|..||+.+|+..-+..-- .....+... .. +..+++++.++.+..||....+ ..-... +......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PD-GGRVYVASGDGNLYALDAKTGK----VLWRFDLPGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EE-TTEEEEEETTSEEEEEETTTSE----EEEEEECSSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-Ee-CCEEEEEcCCCEEEEEECCCCC----EEEEeecccccccee---
Confidence 689999999999876554321 111121122 22 4466677889999999975332 221111 1111111
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 136 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 136 ~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
...+..++.+..|+.++.+|.+..+. .|.......++.. . ...
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~-----------~W~~~~~~~~~~~--~-----------------------~~~ 115 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKV-----------LWSIYLTSSPPAG--V-----------------------RSS 115 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCE-----------EEEEEE-SSCTCS--T-----------------------B--
T ss_pred -eecccccccccceeeeEecccCCcce-----------eeeeccccccccc--c-----------------------ccc
Confidence 11344666666888999999765332 1210000000000 0 000
Q ss_pred eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
.....++..++.+..++.|..+|.++|+.+-......
T Consensus 116 ~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 0011125567888889999999999999877766543
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.073 Score=49.24 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-----------CCeEEEEc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWD 110 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----------dg~v~lWd 110 (303)
-.=+.|||-|.+|++-=.-| |.+|--..-....+ ..| ..|..+.|+| +.++|+|=+. ...+++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R-F~H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR-FYH-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh-ccC-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence 44589999999999998888 88994433322222 234 4688888964 6778887553 25889999
Q ss_pred CccccCCCccceeeccccc--C-eEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLE--G-ITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~--~-v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
++.+ ...+.|....+ . -..+.|+.|+.|+|.-.. .+|.|++..+.
T Consensus 289 I~tG----~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf 336 (698)
T KOG2314|consen 289 IATG----LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF 336 (698)
T ss_pred cccc----chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce
Confidence 8743 33333322112 2 234578999999987665 67888886653
No 321
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0029 Score=51.91 Aligned_cols=106 Identities=20% Similarity=0.325 Sum_probs=63.7
Q ss_pred CCEEEEeeCCCeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc-
Q 022074 51 GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 128 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~- 128 (303)
+..+++|+.||.|.+|....- ........-...+.+....-..+.+..++++||.+|.|... ..+..+...+|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeeccccC
Confidence 557999999999999977621 11111111112222322223345577789999999999864 334455555566
Q ss_pred cCeEEEEeCCCCCEEEEE--eCCCcEEEEEcccc
Q 022074 129 EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKM 160 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~--~~D~~v~lWdl~~~ 160 (303)
.++........++.++.. |.|..++.|++...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 445444445555666666 67777777776643
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.87 E-value=0.24 Score=42.16 Aligned_cols=210 Identities=12% Similarity=0.138 Sum_probs=105.4
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.|-...+..|+|+|+.+ .+++....+.|.-++++ |+...++.-. .+....+++. .++.++++.-.++.+.++++..
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE--
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEec
Confidence 34444599999999866 45556667778777764 5555544322 3567888885 4466666666689998887632
Q ss_pred ccCCCcc--ceee-----cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 114 LNVKGKP--AGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 114 ~~~~~~~--~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
....... ...+ ..+..++-.+++.+.++.|+.+-.....+++.++......... .... .
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~------~~~~--~------ 161 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF------VSDD--Q------ 161 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E------EEE---H------
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee------eccc--c------
Confidence 2111100 0111 1234458889999887777777777777787765421000000 0000 0
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC---------CCeEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRD 257 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~---------~~I~~ 257 (303)
.... ...........++.| ..+.+++-..++..|-..| .+|+.+..+.-.. .....
T Consensus 162 ---------~~~~--~~~~~~d~S~l~~~p---~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 162 ---------DLDD--DKLFVRDLSGLSYDP---RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp ---------HHH---HT--SS---EEEEET---TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred ---------cccc--ccceeccccceEEcC---CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence 0000 000000111111111 2467788888999999999 5677666554221 35789
Q ss_pred EEECCCCCeEEEEeCCCCEE
Q 022074 258 CSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~ 277 (303)
|+|.++|++.+++ +-+...
T Consensus 227 Ia~d~~G~LYIvs-EpNlfy 245 (248)
T PF06977_consen 227 IAFDPDGNLYIVS-EPNLFY 245 (248)
T ss_dssp EEE-TT--EEEEE-TTTEEE
T ss_pred EEECCCCCEEEEc-CCceEE
Confidence 9999999876665 433333
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.69 E-value=0.3 Score=43.17 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=39.8
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEE-eCCCCEEEeecCCC
Q 022074 233 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGN 284 (303)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~-s~Dg~i~~Wd~~~~ 284 (303)
.|+++|+++++.+.++.. ..++.+++.+.+.+ +|.+. ..++.|.+||....
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 388999999999988863 24688999999865 66554 45799999998754
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.67 E-value=0.084 Score=50.26 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=58.7
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc-------CCCcEEEEecCCCeEEEEcCcccc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD-------ESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~-------~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.-+.++++|+++.+.+.+. +.+.....+..-+.. ..+.|+. ++++.... .++.|.+.|.+...
T Consensus 238 d~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~ 307 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAA 307 (635)
T ss_pred ccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence 4567888888888776322 112211111111111 2222221 23544443 25689999975310
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 161 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~ 161 (303)
..+.....+..-....+.++++|||++++.++ .+.+|-+.|+.+.+
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 01111222222334567888999999986555 69999999998754
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.65 E-value=0.16 Score=37.21 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=60.1
Q ss_pred eEEEEEc---CCC-CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFS---TDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s---~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
|.++++. .|| +.|++||.|..||+|+- .....++..+ +.|..++... ...|+.+-.+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCc-----
Confidence 4555555 343 47999999999999955 3444444433 5677777643 3689999999999998742
Q ss_pred Cccceeecccc-cCeEEEEeCCCC-CEEEEEeCCCcE
Q 022074 118 GKPAGVLMGHL-EGITFIDSRGDG-RYLISNGKDQAI 152 (303)
Q Consensus 118 ~~~~~~~~~h~-~~v~~~~~~~~~-~~l~s~~~D~~v 152 (303)
.+.-+.=..|. -++...++..+| ..|++|=.+|.|
T Consensus 72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 11111111111 122233344444 347777777765
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.52 E-value=0.00072 Score=62.92 Aligned_cols=143 Identities=24% Similarity=0.321 Sum_probs=90.8
Q ss_pred EEEccCchhhccccccccccCcCc-ccccCCCcccceEEEEEcC-CCCEEEEee----CCCeEEEEECCCCce----EEE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDF-SAADDGGYSFGIFSLKFST-DGRELVAGS----SDDCIYVYDLEANKL----SLR 76 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~-~g~~l~sgs----~Dg~v~lwd~~~~~~----~~~ 76 (303)
|+-||+++ .+|.+--. +..+. +.+.-+||-.+..+++|++ |.+.||+|= .|..+.|||+.++-. ...
T Consensus 72 IlavG~at--G~I~l~s~-r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 72 ILAVGSAT--GNISLLSV-RHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred hhhhcccc--CceEEeec-CCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 45567666 55543322 11223 3555688999999999997 556666663 466799999988721 112
Q ss_pred Eec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 022074 77 ILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKL 154 (303)
Q Consensus 77 ~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~l 154 (303)
+.+ ...+.+.+||. .+.+++++|.....++++|+|....... .+ .+..+..+.+.| ..+|+++.. |+.|-+
T Consensus 149 fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~---sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi 221 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVS---SV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI 221 (783)
T ss_pred cccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhh---hh--hhhhcccceecCCCCCceeccc-cCceee
Confidence 222 34567788996 5567888999999999999872111111 11 122344455566 566777766 999999
Q ss_pred EE-ccc
Q 022074 155 WD-IRK 159 (303)
Q Consensus 155 Wd-l~~ 159 (303)
|| .+.
T Consensus 222 wD~~rn 227 (783)
T KOG1008|consen 222 WDTYRN 227 (783)
T ss_pred ccchhh
Confidence 99 443
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.46 E-value=0.22 Score=50.30 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=70.6
Q ss_pred EEEEEcCCCCEEEEee----CC-CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---CCCeEEEEcCccc
Q 022074 43 FSLKFSTDGRELVAGS----SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCL 114 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs----~D-g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~ 114 (303)
.+|+|..||+++++.. .+ .+|++||-+ |.+...-....+--.+++|-| .+..+++.. .|+.|.++.....
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence 4689999999999843 23 789999987 544322222233345889965 677877663 4667888874311
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEE---EeCCCcEEEEEcc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLIS---NGKDQAIKLWDIR 158 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~D~~v~lWdl~ 158 (303)
. .+.....+......+..+.|+.++..|+. ......|++|-+.
T Consensus 277 ~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 277 R-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred c-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 1 01001011111223788899999888876 5555669999764
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.42 E-value=0.065 Score=52.69 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred eCCCeEEEEECCCCceEEEEecccCC-eEEEEEccC----CCcEEEEecCCCeEEEEcCccccCCCccce-eec--cccc
Q 022074 58 SSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLM--GHLE 129 (303)
Q Consensus 58 s~Dg~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~--~h~~ 129 (303)
.....++-.|+.+|+.+..+..|... |..++-..+ .+...+.|-.+..+..||.|... .+.+. ... ....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--CceeeccccccccCC
Confidence 34577999999999999988887754 666653211 12344567667788899988422 11111 010 1223
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
...|++...+| +||.|+.+|.||+||- ... . ....++++.-++..++...+++.+...|.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~-~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGK-R--AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cch-h--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 57788777777 7999999999999983 211 1 11223333334444444455555544444
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.42 E-value=0.069 Score=52.51 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=45.5
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
...++|.|+.+|.||+||- .|...+ .+.+-..||..|+.+.||++|++.+ +.-|.+.+.
T Consensus 587 ~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 587 EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3457999999999999994 444333 3556678999999999999987776 456666764
No 330
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.35 E-value=0.019 Score=35.16 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=27.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLE 69 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~ 69 (303)
..|.+++|+|..+.+|.|+.||.|.|+.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 459999999999999999999999999983
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.32 E-value=0.83 Score=41.70 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.2
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEECCCCCeEEEEeCCCCEEEeec
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~-v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+..++.++.||.+++.|..+|+.+...+.....+.+ -.+ .+..|..++.||.+..++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 345778899999999999999988776644333322 111 2446777788999998775
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.32 E-value=0.14 Score=47.13 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=101.9
Q ss_pred cceEEEEEcCCCCEEEEee---CC-CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE--cCcc
Q 022074 40 FGIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW--DRRC 113 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs---~D-g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW--d~~~ 113 (303)
..+..=.|+++++.++-.+ .. ..++++|+++++....+ ...+.-..-.|+|+..+++++...||...+| |+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3566678999988755543 22 35899999988754332 2333344557887766777888888877666 5432
Q ss_pred ccCCCccceeecccccCe-EEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 114 LNVKGKPAGVLMGHLEGI-TFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
. ....+. +..++ ..=+++|+|++++ +.++.|.-.||-+.......
T Consensus 272 ~-----~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--------------------------- 318 (425)
T COG0823 272 K-----NLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--------------------------- 318 (425)
T ss_pred C-----cceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---------------------------
Confidence 1 122222 22222 2445889999876 44456666666443211000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~--i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
...+..+ .....|..||||++++..+. +|. |.+.|+.++..+..+. +..-...-.|.|+++.+.
T Consensus 319 ----~riT~~~--------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ----TRLTFSG--------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ----eEeeccC--------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 0001111 11124667899999888774 344 6666666655433332 222334456777776544
Q ss_pred EE
Q 022074 269 SS 270 (303)
Q Consensus 269 s~ 270 (303)
..
T Consensus 386 ~~ 387 (425)
T COG0823 386 FS 387 (425)
T ss_pred Ee
Confidence 33
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.26 E-value=0.28 Score=35.95 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred eEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC---CCC-CeEEEEeCCCCEE
Q 022074 223 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH---PSQ-PMLVSSSWDGDVV 277 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s---p~~-~~las~s~Dg~i~ 277 (303)
..++.|-++|+|-+|+-..+ +=..+.- ..+.++++. .|| +-|++|-.+|.+-
T Consensus 54 ~~F~Y~l~NGTVGvY~~~~R--lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDRSQR--LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeCcce--eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55888999999999986432 2223322 224554433 333 3699998888775
No 334
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.066 Score=51.47 Aligned_cols=237 Identities=15% Similarity=0.140 Sum_probs=117.8
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCccccCC-Cccce
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVK-GKPAG 122 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~-~~~~~ 122 (303)
.+|+|.-+.++-...-.-+.|+|++-.+....+.-..+++.-+.+.|+ ..+.|++.-.||.+.+|-.+..... ..+..
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 566776665555556667999999887766554444455666666553 3567889999999999976532111 11111
Q ss_pred eecc-cccCeEEEE-----------eCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 123 VLMG-HLEGITFID-----------SRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 123 ~~~~-h~~~v~~~~-----------~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.+.- -.+.+.++. ..|. ...++.--.++.+-+|.++..+.......+........ .+......+
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf---~f~~~~~~v 392 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF---DFNLSTKLV 392 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc---cccCceeeh
Confidence 1110 011111111 1222 23344444577888999874322111111110000000 000000000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeee-----eC-------CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVY-----ST-------GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~-------~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 257 (303)
.-...-.+....+|..-..+.+.+..|.+ .| ...++|.|.+.|+|.++|+.++...+.+..|...|.+
T Consensus 393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkg 472 (1062)
T KOG1912|consen 393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKG 472 (1062)
T ss_pred hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceee
Confidence 00000000000011111111111111111 01 1347888999999999999999988899999999999
Q ss_pred EEECCCCCeEE---------EEeCCCCEEEeecCCC
Q 022074 258 CSWHPSQPMLV---------SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 258 v~~sp~~~~la---------s~s~Dg~i~~Wd~~~~ 284 (303)
+.|-...+++- +++--+.+.+=|+++.
T Consensus 473 leW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG 508 (1062)
T KOG1912|consen 473 LEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG 508 (1062)
T ss_pred eeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence 99965444322 2222345556666544
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.062 Score=50.99 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.=-+++..+++++.|+.-|.+++|+-.++.....-. +..+.+.....+ ++..+++.|+..|.|.++-+.. .+...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~-~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNK-ELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhc-cCCCc
Confidence 34445566789999999999999999998886543222 122333444554 4577888888899998886432 11111
Q ss_pred c--ce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 120 P--AG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 120 ~--~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
. .. .-..|...|+++.|++++..+.+|..-|+|-+-.|..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 11 1123778899999999999999999999999876654
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.017 Score=51.22 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=65.8
Q ss_pred EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CC
Q 022074 63 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 141 (303)
Q Consensus 63 v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 141 (303)
++.++..+-+....+..|...|..++|+|.+.-++..++.+..+++.|++... ....+..| ..+++++|..+ .+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcc
Confidence 44444444333334556777899999987554478899999999999987332 23334445 67888888765 46
Q ss_pred EEEEEeCCCcEEEEEcccc
Q 022074 142 YLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 142 ~l~s~~~D~~v~lWdl~~~ 160 (303)
+|..|-..|.|.+||+|..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeEEeccCceEEEEEccCC
Confidence 7888889999999999963
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.022 Score=53.25 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=57.3
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-EEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~-~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|.-.++|++.++|.+-++... .+.+-++..|..+++ +++|.|||+.||.|=.||+|++-|+...
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44556789999999999999886 677888887888888 9999999999999999999999998643
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.04 E-value=0.83 Score=41.75 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=108.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-------------------------------------------EE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------------------------------------LR 76 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-------------------------------------------~~ 76 (303)
..|..++|+++...+++|...|.|-||.....+.. ..
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 46899999999889999999999988844221100 01
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc-ccee--ec-ccccCeEEEEeC-----CCC---CEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV--LM-GHLEGITFIDSR-----GDG---RYLI 144 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~-~~~~--~~-~h~~~v~~~~~~-----~~~---~~l~ 144 (303)
+....+.|++++-+ +-+ .++.|.++|.+.+.|+|.....-. .+.. .. ...+.++++.|. .|+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 12224678888874 334 788899999999999974321100 0000 00 122345555543 333 5678
Q ss_pred EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEE----eeeeeeeC
Q 022074 145 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC----HFSPVYST 220 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~ 220 (303)
.|...|.+.+|.+-... ..... ..+. ........+ -..+..++........... ....-..
T Consensus 160 vGTn~G~v~~fkIlp~~-~g~f~-----v~~~--~~~~~~~~~------i~~I~~i~~~~G~~a~At~~~~~~l~~g~~- 224 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSS-NGRFS-----VQFA--GATTNHDSP------ILSIIPINADTGESALATISAMQGLSKGIS- 224 (395)
T ss_dssp EEETTSEEEEEEEEE-G-GG-EE-----EEEE--EEE--SS----------EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EEeCCCCEEEEEEecCC-CCceE-----EEEe--eccccCCCc------eEEEEEEECCCCCcccCchhHhhccccCCC-
Confidence 89999999999874211 01000 0000 000000000 0011111111000000000 0000000
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE-----CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-----HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~-----sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...+++ ...+..|+++...+.+..............+.+ ...+..|++-..+|.++++-++.-
T Consensus 225 i~g~vV-vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 225 IPGYVV-VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp --EEEE-EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cCcEEE-EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 112344 344778999999887765443322223334555 235668999999999999999854
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.93 E-value=0.89 Score=38.54 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=44.6
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
-|++++.|...|.+++.+.++|.....+..- +.|.+-+....++.++..++.|++.+.-|.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 4778999999999999999999654333321 2333333334457788999999999887765
No 340
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.91 E-value=0.033 Score=34.12 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.4
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
..+|..++|+|+..+||.+..||.+.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999974
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.89 E-value=1.1 Score=39.19 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred EEEEcC-CCCEEEEeeCCCe-EEEEECCCCceEEEEecccCCeE--EEEEccCCCcEEEEec-----CCCeEEEEcCccc
Q 022074 44 SLKFST-DGRELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGS-----DDNLCKVWDRRCL 114 (303)
Q Consensus 44 ~l~~s~-~g~~l~sgs~Dg~-v~lwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~s-----~dg~v~lWd~~~~ 114 (303)
.++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. --+|++ ++++|++.- ..|.|-+||...
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC-
Confidence 456677 4555666666664 57889999987665544332211 235754 577777653 367899999751
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 147 (303)
.-..+..+..|.-.-.-+.+.+||+.|+.+.
T Consensus 87 --~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 87 --GYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred --CcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 2234556666655555666788887776654
No 342
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.23 Score=45.98 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQV-AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~-~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...++|.||.+|.||+||- .+... ..+.+-..+|..+..+.+|.+++..+ +..|.+-+...
T Consensus 440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 3457999999999999997 45443 34677888999999999999887776 45666666543
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.079 Score=49.73 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=58.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE-EEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..+.-+.|+|.-..+|.+..+|.|.+..+. .+..-.+.-|+..++ +++|.| +++.++.|-+||+|++-|..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 358889999999999999999999998887 333444554777777 999975 49999999999999999975
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.068 Score=50.72 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=52.5
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeE---E--EEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQ---V--AAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~---~--~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|++..++|.|++.|.|.++-+..+.+ + ... +.|...|++++|++++..|.+|..-|++.+-.+..
T Consensus 84 vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 84 VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 355677889999999999998866432 1 111 24778999999999999999999999999887764
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.68 E-value=0.96 Score=43.36 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.3
Q ss_pred eeeCCCeEEEEEe-CCCeEEEEECCCCeE------------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 217 VYSTGQKYIYTGS-HDSCVYVYDLVSGEQ------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 217 ~~s~~~~~latg~-~dg~i~iwd~~~~~~------------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+||||+++++++ .+.++.|.|+.+.+. +.+.+.-.+ ....+|.++|+...|--.|..+..|++..
T Consensus 327 ~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 327 NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4688999877765 699999999987653 344443233 45789999999999999999999999864
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=1.1 Score=41.68 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
|.+|...+.+ .|.+||+.+++.+..+... +|..+.||+++.++|-.+.+ ++.+.+.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 4444444433 6888888888877777532 47888888888887777644 6666654
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.7 Score=42.62 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=74.6
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCC-----eEEEEECCCCc-----eE---EEEecc-----cCCeEEEEEccCCCcE
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDD-----CIYVYDLEANK-----LS---LRILAH-----TSDVNTVCFGDESGHL 96 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg-----~v~lwd~~~~~-----~~---~~~~~h-----~~~v~~l~~~~~~~~~ 96 (303)
.+|..++...-+..++ ++|++-+.|+ .++||+++.-+ .. .++..| ..+++.++.+ .+-+.
T Consensus 61 qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~ 139 (933)
T KOG2114|consen 61 QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKT 139 (933)
T ss_pred eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccE
Confidence 4566664444455555 5777766655 48999986531 11 133332 2467778885 44778
Q ss_pred EEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 97 l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
+++|-.||.|..+..+.....+........-.++|+.+.+..++...+-...-..|.+|.+.
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 89999999999986432111122122222234689999998888774444445778888775
No 348
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.31 Score=45.15 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=85.0
Q ss_pred CCcccceEE-EEEcCCCCE-EEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC------CcEEEEecCCCeEE
Q 022074 36 GGYSFGIFS-LKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------GHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~-l~~s~~g~~-l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~s~dg~v~ 107 (303)
.||+..-.. +....+.+. +.++..-..++=.|+++|+.+..+.-+.. |+-+.+.|+. +..-+.|-.|..|.
T Consensus 329 ~g~S~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vf 407 (644)
T KOG2395|consen 329 DGKSIDPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVF 407 (644)
T ss_pred CccccCcchhhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceE
Confidence 455533332 333334443 44455555688889999999888877766 6666665431 11223455577888
Q ss_pred EEcCccccCCCccceeecccc----cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
-||.|..... .+...++|. ....|.+...+| +++.||.+|.|||||-- +. . ....++.+.-++..+...
T Consensus 408 riDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~-~--AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 408 RIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GR-R--AKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EecccccCcc--eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hh-h--hhhcccccCCceeeEEee
Confidence 8998843321 233333442 235566655555 89999999999999852 11 1 112233333344444444
Q ss_pred CCCccccCCCC
Q 022074 184 PQARDLKHPCD 194 (303)
Q Consensus 184 ~~~~~~~~~~~ 194 (303)
.+++.+...|+
T Consensus 481 adGKwil~Tc~ 491 (644)
T KOG2395|consen 481 ADGKWILATCK 491 (644)
T ss_pred ccCcEEEEecc
Confidence 45555544444
No 349
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.90 E-value=0.71 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.7
Q ss_pred cccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 127 h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
..+.|..+..+|||+.|++...+|.|.+|++-.++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 35678899999999999999999999999986544
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.87 E-value=3.1 Score=38.27 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=36.0
Q ss_pred eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCC
Q 022074 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQP 265 (303)
Q Consensus 217 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~ 265 (303)
..||+++++|.-..+|.+.+.+.+-.+.+.++... ..+...+.|--+..
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 46889999999999999999987766666666544 34556777755543
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.82 E-value=2.7 Score=37.18 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=95.0
Q ss_pred eEEEEECCCCceEEEEe-cccCCeEEEE---EccC---CCcEEEEecC----------CCeEEEEcCccccCCCccceee
Q 022074 62 CIYVYDLEANKLSLRIL-AHTSDVNTVC---FGDE---SGHLIYSGSD----------DNLCKVWDRRCLNVKGKPAGVL 124 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~-~h~~~v~~l~---~~~~---~~~~l~s~s~----------dg~v~lWd~~~~~~~~~~~~~~ 124 (303)
.|+|.|..+......+. ..+..+.+++ +..+ ..++++.|.. .|.+.++++.............
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888887776554322 2233445443 3211 1456665542 2889999875320001112211
Q ss_pred --cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEe
Q 022074 125 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201 (303)
Q Consensus 125 --~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (303)
....++|.++... .+ +|+.+ .++.|.+|++.... .. ..+.+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~--------------------------------~~~~~~ 127 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLL--------------------------------KKAFYD 127 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEE--------------------------------EEEEE-
T ss_pred EEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccch--------------------------------hhheec
Confidence 1235678887655 34 34333 34899999987533 00 011111
Q ss_pred cccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 202 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
...... .+ ...+.+++.|..-+.+.++..+. .+.+..+. ....+++++.|-++++.++.++.+|++.+
T Consensus 128 ~~~~i~-sl--------~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 128 SPFYIT-SL--------SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp BSSSEE-EE--------EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred ceEEEE-EE--------eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 111000 01 11145788898888888875443 33333332 23456899999877789999999999999
Q ss_pred eecCC
Q 022074 279 WEFPG 283 (303)
Q Consensus 279 Wd~~~ 283 (303)
+..+.
T Consensus 199 l~~~~ 203 (321)
T PF03178_consen 199 LRYNP 203 (321)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 99864
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.79 E-value=0.034 Score=53.86 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=57.2
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++|..-.|+.|-+-|.+.+|...+.+.-.....|..+|..+.|||+|..|.|+..=|.+.+|...
T Consensus 67 WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 67 WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45666678889999999999988877766667899999999999999999999999999999865
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.17 Score=50.45 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=53.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEE---EEccCCCcEEEEecCCCeEEEEcC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV---CFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+||.+++|+.+|+.++.|=.+|.|.+||+.+++....+..|..++..+ .+.. .+..++++...|. +|.+
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 589999999999999999999999999999998877766666554444 3433 3457888888886 4653
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.10 E-value=4.5 Score=36.86 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEeccc-C---------Ce-EEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHT-S---------DV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~---------~v-~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
.+..+++++.+|.+.-+|.++|+..-+..-.. . .+ ..... .+..++.++.++.+.-+|.+..+...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 36678888889999999999987653322111 0 00 01111 13456677788999989876443322
Q ss_pred ccceeecccccCeEE-EEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 119 KPAGVLMGHLEGITF-IDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
+.. +.+ .+.+ ..+ .+..++.+..++.+..+|....+.
T Consensus 145 ~~~--~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 145 QTK--VAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ccc--CCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 111 111 1110 001 133566667778888888765443
No 355
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.87 E-value=3.4 Score=34.63 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC--CCeEEEEe
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS--QPMLVSSS 271 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~--~~~las~s 271 (303)
+|.+.++.-..++|...|..+|+.+.+++-....|++++|--. .-+.+|+.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 4677777888899999999999999999989999999999543 22444444
No 356
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.87 E-value=0.2 Score=43.68 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=46.1
Q ss_pred eeeCCCeEEEEE-----eCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 217 VYSTGQKYIYTG-----SHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 217 ~~s~~~~~latg-----~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
+||+||++|++- ...|.|-|||.. +.+.+.++..|..-..++.+.||++.|+.+-
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 488999988884 457899999998 6677889998888889999999998777763
No 357
>PHA02713 hypothetical protein; Provisional
Probab=93.59 E-value=4.7 Score=38.76 Aligned_cols=60 Identities=7% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCeEEEEEeCC------CeEEEEECCC-C--eEEEEeecCCCCeEEEEECCCCCeEEEEeCCC--CEEEeecC
Q 022074 221 GQKYIYTGSHD------SCVYVYDLVS-G--EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFP 282 (303)
Q Consensus 221 ~~~~latg~~d------g~i~iwd~~~-~--~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg--~i~~Wd~~ 282 (303)
+++..+.||.+ ..+..||..+ . +.+..+.........+.+ ++.+.+.||.|+ .+..+|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 45666667643 2477899886 3 344444433333333334 788899999888 56666654
No 358
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.37 E-value=1.5 Score=42.40 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=36.7
Q ss_pred eeeeeCCCeEEEEEeC------------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 215 SPVYSTGQKYIYTGSH------------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 215 ~~~~s~~~~~latg~~------------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.|.|+|+|+.+++... .+.+++.++..++... .....|.++.|||||..+|-.. ++.+.+
T Consensus 401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 4567777666655532 2344444554444322 2345799999999999777655 466655
No 359
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.36 E-value=2.1 Score=41.39 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEc-cCCCcEEEEecCCCeEEEEcCc-----cc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRR-----CL 114 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~~~~l~s~s~dg~v~lWd~~-----~~ 114 (303)
..-+.-|.-++..++-+...++.|||.+.+.+..+. ....+.|.++.|. .++++.+++.+....|.++.-. ..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 444555666776666666667999999998765432 2456789999994 3568888899999999998531 01
Q ss_pred cCCCcccee--ecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 115 NVKGKPAGV--LMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+...++.. +..|+ .+|....|.++|.+++.+| ..+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111112221 23344 4577777888886555443 67888864
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.12 E-value=6.3 Score=35.39 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=60.2
Q ss_pred cCCCCEEEEee---------CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC--
Q 022074 48 STDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-- 116 (303)
Q Consensus 48 s~~g~~l~sgs---------~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~-- 116 (303)
|||+++++... ..+.+.|+|+.+++... +......+....|+|+ ++.++-.. ++.|.+++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEE
Confidence 57888777742 34578999999986543 3333567888899865 66766554 56888887532100
Q ss_pred ---CCccceeecccc---------cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 022074 117 ---KGKPAGVLMGHL---------EGITFIDSRGDGRYLISNG-KDQAIKLWDIR 158 (303)
Q Consensus 117 ---~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~ 158 (303)
.+ ....+.|-. +.-..+-|+||+++|+... .+..|+.+.+-
T Consensus 78 lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 78 LTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp SES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred ecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 01 001111111 1223566899999988765 45667776553
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.11 E-value=3 Score=38.20 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCCEEEEe-eCCC----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC----------
Q 022074 39 SFGIFSLKFSTDGRELVAG-SSDD----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---------- 103 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sg-s~Dg----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---------- 103 (303)
...+....+||||+++|-+ +..| +++++|+++++........... ..+.|.++ ++.|+-...+
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d-~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDD-GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTT-SSEEEEEECSTTTSS-CCGC
T ss_pred eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCC-CCEEEEEEeCcccccccCCC
Confidence 4445578999999988765 4444 4999999999765432222112 23899754 4554444322
Q ss_pred -CeEEEEcCccccCCCccceeecccccC--eEEEEeCCCCCEEEE-EeCCC---cEEEEEccc
Q 022074 104 -NLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLIS-NGKDQ---AIKLWDIRK 159 (303)
Q Consensus 104 -g~v~lWd~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s-~~~D~---~v~lWdl~~ 159 (303)
..|+.|++... ...-...+.+.... ...+..+.++++++. .+... .+.+-|+..
T Consensus 201 ~~~v~~~~~gt~--~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 201 PRQVYRHKLGTP--QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp CEEEEEEETTS---GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CcEEEEEECCCC--hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 23677776421 11112334443333 456778899998764 33333 355556654
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=0.54 Score=47.13 Aligned_cols=102 Identities=21% Similarity=0.372 Sum_probs=67.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
.+..++.|+.-|.+-..|+.+.--. ..-..-.++|++++|+ .++..++.|-.+|-|.+||.. .+.+.+.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 4567888888888988888654111 1111234689999995 568888889899999999964 334444444444
Q ss_pred cC---eEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 129 EG---ITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 129 ~~---v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.+ |..+....++..++++..-|+ +|.+.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 33 444444555667888777676 77654
No 363
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.65 E-value=8.2 Score=35.54 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCCCCe--EEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV--RDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I--~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.++.++.++.+.||.-.+ ++=.-+....|| .-..|.....+|++-+.+|.+.+--+-
T Consensus 302 ~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred EEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 488899999999996432 211111122333 233344456689999999999998763
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.60 E-value=6.9 Score=34.53 Aligned_cols=193 Identities=17% Similarity=0.241 Sum_probs=99.6
Q ss_pred eEEEEEcCC----CCEEEEeeC----------CCeEEEEECCCC-----ceEE-EEecccCCeEEEEEccCCCcEEEEec
Q 022074 42 IFSLKFSTD----GRELVAGSS----------DDCIYVYDLEAN-----KLSL-RILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 42 v~~l~~s~~----g~~l~sgs~----------Dg~v~lwd~~~~-----~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
+..+.+..+ ..++++|+. .|.|.+|++... ++.. ......++|.+++-. ++. ++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee
Confidence 444555543 467887763 288999999884 2221 123456789998764 344 43333
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
++.|.+|++.... .-.+. .+......+.++... +++++.|...+.+.++..+.... .+
T Consensus 106 -g~~l~v~~l~~~~-~l~~~-~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~----~l------------- 163 (321)
T PF03178_consen 106 -GNKLYVYDLDNSK-TLLKK-AFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN----KL------------- 163 (321)
T ss_dssp -TTEEEEEEEETTS-SEEEE-EEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-----E-------------
T ss_pred -cCEEEEEEccCcc-cchhh-heecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC----EE-------------
Confidence 4699999875322 01111 121122245555443 55999999999999885543100 00
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-------Ce-EEE-Eeec-C
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------GE-QVA-ALKY-H 251 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-------~~-~~~-~~~~-h 251 (303)
...........+..+ .+-.++..++.+..+|.+.++.... ++ .+. ...- .
T Consensus 164 ----------------~~va~d~~~~~v~~~----~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l 223 (321)
T PF03178_consen 164 ----------------ILVARDYQPRWVTAA----EFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL 223 (321)
T ss_dssp ----------------EEEEEESS-BEEEEE----EEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred ----------------EEEEecCCCccEEEE----EEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence 000000000011111 1222335789999999999998752 22 222 2222 2
Q ss_pred CCCeEEE---EECCC--C------CeEEEEeCCCCEEEe
Q 022074 252 TSPVRDC---SWHPS--Q------PMLVSSSWDGDVVRW 279 (303)
Q Consensus 252 ~~~I~~v---~~sp~--~------~~las~s~Dg~i~~W 279 (303)
...|+++ .+.|. + +.++-++.+|.|-.-
T Consensus 224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4578887 55562 2 248888889998843
No 365
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=92.57 E-value=8.2 Score=35.34 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE--ec------ccCCeEEEEEcc----CCC---cEEEEecCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI--LA------HTSDVNTVCFGD----ESG---HLIYSGSDD 103 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~--~~------h~~~v~~l~~~~----~~~---~~l~s~s~d 103 (303)
..+|.+++.| |=.+++.|..+|++.|.|++....+... .. ....++++.|.. +++ -.+++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 6789999998 5669999999999999999777655431 12 123567777741 222 367889999
Q ss_pred CeEEEEcC
Q 022074 104 NLCKVWDR 111 (303)
Q Consensus 104 g~v~lWd~ 111 (303)
|.+.+|.+
T Consensus 165 G~v~~fkI 172 (395)
T PF08596_consen 165 GNVLTFKI 172 (395)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEE
Confidence 99999976
No 366
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.14 E-value=0.58 Score=27.90 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCeEEEEECCCC---CeEEEEeCCCCEEEeecCCCCc
Q 022074 253 SPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 253 ~~I~~v~~sp~~---~~las~s~Dg~i~~Wd~~~~~~ 286 (303)
+.|.+|+|||.. .+|+-+-.-+.+.++|...+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 368899999854 4899888889999999886443
No 367
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.83 E-value=7.4 Score=33.19 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=26.7
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
..+++.++.+|+.|+..+..|.++...+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 44678899999999999999999877776654
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.81 E-value=9.1 Score=36.93 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceEEEEecccCCe--EEEEEccCCCcEEEEecCCCe-----EEEEcCccccC
Q 022074 50 DGRELVAGSSD------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNV 116 (303)
Q Consensus 50 ~g~~l~sgs~D------g~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~dg~-----v~lWd~~~~~~ 116 (303)
++...++||.| .++..||..+++.. .+..-...- ..++. -++.+.+.|+.||. |-.||.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~-~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~-- 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT-PVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTN-- 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCcee-ccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCC--
Confidence 56788889988 36788999888743 222211111 12222 23678888998875 445665422
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.................+.+ +|...+.||.|+.-
T Consensus 407 ~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 22222222211222222222 56777888876654
No 369
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.33 E-value=0.72 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCeEEEEEccCCC--cEEEEecCCCeEEEEcCc
Q 022074 82 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 82 ~~v~~l~~~~~~~--~~l~s~s~dg~v~lWd~~ 112 (303)
+.+.++.|+|... ++|+-+-..|.|.++|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 3578999987655 788888889999999987
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.07 E-value=1.6 Score=40.27 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCEEEEe-eCCCe--EEEEECCCCceEEEEecccCCeE-EEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFSTDGRELVAG-SSDDC--IYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg~--v~lwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
-..-+|+|||++|+-. ..||. |++.|+.++.... + .+..++. .=.|+|+....+++.+..|.=.+|-... .
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~---~ 314 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL---E 314 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC---C
Confidence 3445799999976665 45665 5666887776432 2 3333333 3356666555666777777555553221 1
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
+.....+.-....-..-.++|+|.+|+-.+..
T Consensus 315 g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 315 GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 22222332222222245689999999877643
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.52 E-value=0.77 Score=41.28 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=39.3
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+.+.++|+.+++.. .+......+....|||+|+.+|-.. ++.|.+++....
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 457999999997643 3333367899999999999988886 689999987654
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.30 E-value=5.6 Score=34.06 Aligned_cols=107 Identities=23% Similarity=0.366 Sum_probs=61.6
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc--e----
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--G---- 122 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~--~---- 122 (303)
..++.|+.|+.+| +++++........++. +...|..+...++-+ .|+.-+ |++++++++.......... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 9999993333222222 223388888765544 444444 4999999986432221100 0
Q ss_pred ----eecccccCeEEEE--eCCCCCEEEEEeCCCcEEEEEccc
Q 022074 123 ----VLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 123 ----~~~~h~~~v~~~~--~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.-......+..++ -...+...+.....++|.+|....
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 0111223454444 233445556666667999998765
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.26 E-value=12 Score=32.86 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=60.7
Q ss_pred cccccccCcCc-ccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 20 NVTEIHDGLDF-SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+|.+=.+|.+- .++. .+-...+..+..++||+++++++.-....-||.-.......-..-...|..+.|.++ +.+.+
T Consensus 125 ~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw~ 202 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLWM 202 (302)
T ss_dssp -EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EEE
T ss_pred cEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEEE
Confidence 45555555522 1222 344467899999999999988866665667765433222222334578999999754 55544
Q ss_pred EecCCCeEEEEcCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 99 SGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
....|.++.=+......+. ++......-.-.+..+++.+++...++|+..
T Consensus 203 -~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 203 -LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred -EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 4478888876511000000 0111111112346788898888777776654
No 374
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.26 E-value=2.1 Score=35.67 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEE-------ee-------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAA-------LK-------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++.+|++-..+|.+++||+.+++.+.. +. .....|..+..+.+|.-+++-+ +|....|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 577899999999999999998875321 11 2446799999999998777665 5778888753
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.19 E-value=18 Score=34.86 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=54.4
Q ss_pred cCCCCEEEEeeCCC------eEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCC------CeEEEEcCccc
Q 022074 48 STDGRELVAGSSDD------CIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCL 114 (303)
Q Consensus 48 s~~g~~l~sgs~Dg------~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~lWd~~~~ 114 (303)
+..+..++.||.++ .+..||..++...... ..+...-.+++.. ++.+.++|+.| .++..||.+..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 34466778888774 6888999888533211 1222233444443 35788899988 35556776532
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.......+...........+ +|...+.||.|+.-
T Consensus 360 --~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~ 393 (571)
T KOG4441|consen 360 --QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEK 393 (571)
T ss_pred --ceeccCCccCccccceeEEE--CCEEEEEecccccc
Confidence 22223223222222222222 57778899998553
No 376
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.93 E-value=2.5 Score=24.45 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=26.7
Q ss_pred CCeEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 221 GQKYIYT-GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 221 ~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
++++|.+ .-.+++|.++|..+++.+..+..- .....+.|+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 4454444 456899999999999888877653 333455553
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=16 Score=33.32 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.-..++++++++.+.++.. ++++.+.|..+.+.......-..+ ..+++.+......++-..++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4567889999988888765 688999999988877664433334 778886553335555567889999986422211
Q ss_pred -CccceeecccccCeEEEEeCCCCCEEEEEeC-C--CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 118 -GKPAGVLMGHLEGITFIDSRGDGRYLISNGK-D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 118 -~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D--~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
....... .-...-..+.+.+++.++..... + +.+...|......... ..+..
T Consensus 196 ~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---------------~~~~~-------- 251 (381)
T COG3391 196 RGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---------------DLPVG-------- 251 (381)
T ss_pred cccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---------------ccccc--------
Confidence 1100011 11122235567888886544333 2 4777777653211000 00000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEeecCC---CCeEEEEECCC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT---SPVRDCSWHPS 263 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~h~---~~I~~v~~sp~ 263 (303)
. . .......+|+++++.... ..+.+.+.|..+........... ..+..+++.+.
T Consensus 252 -----~----------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 252 -----S----------G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred -----c----------C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 0 0 000112456777777763 45889999988877665544332 24566666554
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.79 E-value=19 Score=33.13 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.+++..++.||+++++|--..+|.+.+..-
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 368999999999999999999999988763
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=18 Score=32.83 Aligned_cols=198 Identities=15% Similarity=0.127 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec--CCCeEEEEcCccccCCC
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~lWd~~~~~~~~ 118 (303)
-..++.++.++.+++.. .++.|.+.|..+.+.......- .....+++.++.....++-. .++++.+.|.. ..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~----t~ 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA----TN 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCC----CC
Confidence 34577888888655544 4578999997777655433221 24567778665444544444 36788777743 22
Q ss_pred cccee-ecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 119 KPAGV-LMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 119 ~~~~~-~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
..... ..|- .+ ..+++.++|+.++ +...++.+.+.|........ .. + ...
T Consensus 151 ~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---------------~----------~~~ 202 (381)
T COG3391 151 KVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---------------V----------GSL 202 (381)
T ss_pred eEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---------------c----------ccc
Confidence 22222 2222 22 6778899998654 45578999999854321110 00 0 000
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC---CCeEEEEECCCCeEEEE-ee-cCCCCeEEEEECCCCCeEEEE-
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAA-LK-YHTSPVRDCSWHPSQPMLVSS- 270 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~-~~-~h~~~I~~v~~sp~~~~las~- 270 (303)
+. .....+...+++++.++..... ++.+...|..++..... .. +-. ....+..+|++.++-..
T Consensus 203 ~~----------~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 203 VG----------VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred cc----------cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence 00 0000111224566665444433 36899999988776544 21 222 45778999999976666
Q ss_pred eCCCCEEEeecCC
Q 022074 271 SWDGDVVRWEFPG 283 (303)
Q Consensus 271 s~Dg~i~~Wd~~~ 283 (303)
+..+.+.+-|...
T Consensus 272 ~~~~~V~vid~~~ 284 (381)
T COG3391 272 SQGGTVSVIDGAT 284 (381)
T ss_pred cCCCeEEEEeCCC
Confidence 3346777766543
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.06 E-value=16 Score=31.23 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=64.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--------------EecccCCeEEEE-EccCCCcEEEEecCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDN 104 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~--------------~~~h~~~v~~l~-~~~~~~~~l~s~s~dg 104 (303)
.+|..|...++-+.+++= .|+.++++++..-..... ......++...+ -....+...+......
T Consensus 36 ~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 349999999887766654 459999999876432221 122334566655 1122333444444455
Q ss_pred eEEEEcCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 105 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 105 ~v~lWd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.+.+|......... ...+.+. -.+.+..+.+. ++.++.|.. +...+.|+..
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~ 166 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-KGFYLIDLNT 166 (275)
T ss_pred EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-CceEEEecCC
Confidence 88888764321111 2222332 23566677776 445666654 5577888774
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.71 E-value=1.8 Score=37.29 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=48.4
Q ss_pred eeeCCCeEEEEEeC-----CCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 217 VYSTGQKYIYTGSH-----DSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 217 ~~s~~~~~latg~~-----dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+||+||.+|..--. -|.|-|||.+.+ +.+.++..|..-..++.|.+||+.|+.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 58899998876432 467999999855 45788889988889999999999998884 666655
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=87.63 E-value=19 Score=35.04 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=42.1
Q ss_pred eCCCeEEEEEeCCCeEEEEECC-----CC----eEEEEe--ecCC-CCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 219 STGQKYIYTGSHDSCVYVYDLV-----SG----EQVAAL--KYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 219 s~~~~~latg~~dg~i~iwd~~-----~~----~~~~~~--~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.|+++.+++-|-...|.++-.. +. ..+..+ ..|+ .+|.+..|-++|.+++.+| +.+.+++-
T Consensus 83 t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 83 TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 4677888888888888888542 11 122222 3344 5899999999999877775 67888874
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=87.06 E-value=14 Score=31.38 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=59.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC--C-ceE--EEEe------cccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N-KLS--LRIL------AHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~--~-~~~--~~~~------~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
.++.++-.++|++.++.++++-...-..||.++. + ... .... .....+..++++|..+++++-++.+..
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 4667899999999988888887777777887754 2 111 1111 123467899998888899999999999
Q ss_pred EEEEcCccccCCCccceeec---c-c-----ccCeEEEEeCCCCCEEEEE
Q 022074 106 CKVWDRRCLNVKGKPAGVLM---G-H-----LEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~---~-h-----~~~v~~~~~~~~~~~l~s~ 146 (303)
+...|.. +++...+. + | -..--.+++.++|++.+++
T Consensus 195 l~~~d~~-----G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 195 LLELDRQ-----GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEE-TT-------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEECCC-----CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 9998853 23222221 1 1 0134567788888655554
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.73 E-value=39 Score=34.35 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=73.6
Q ss_pred cceEEEEEcCC-CCEEEEee----------CCCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 40 FGIFSLKFSTD-GRELVAGS----------SDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~-g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
..+.++.|..| +.++++|. ..|.|.||....++....+..+ .+.|.++.. -+++++ ++-+.+|
T Consensus 775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkll--A~In~~v 850 (1096)
T KOG1897|consen 775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLL--AGINQSV 850 (1096)
T ss_pred eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEE--EecCcEE
Confidence 36777778877 66788875 2456777776663222222222 244555543 235565 4445699
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
++|+.. ..+..+....|...+..+...-.|..++.|...+++.+-..+.+
T Consensus 851 rLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 851 RLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred EEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 999975 22344455667788888888888889999999999888766543
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.81 E-value=27 Score=31.70 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=33.1
Q ss_pred eCCCeEEEEEeCC----------------CeEEEEECCCCeEEEEeecCC---------CC--eEEEEECCCCCe-EEEE
Q 022074 219 STGQKYIYTGSHD----------------SCVYVYDLVSGEQVAALKYHT---------SP--VRDCSWHPSQPM-LVSS 270 (303)
Q Consensus 219 s~~~~~latg~~d----------------g~i~iwd~~~~~~~~~~~~h~---------~~--I~~v~~sp~~~~-las~ 270 (303)
++|+++++.-|.| -.|++++.+.++.. .+..|. .. =--..||||+++ |.++
T Consensus 291 s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 291 SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp -TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 4677766654443 26778888877642 122221 11 135689999985 7788
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
...|...++=++
T Consensus 370 d~~G~~~vY~v~ 381 (386)
T PF14583_consen 370 DMEGPPAVYLVE 381 (386)
T ss_dssp -TTSS-EEEEEE
T ss_pred CCCCCccEEEEe
Confidence 888888777543
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.98 E-value=32 Score=31.77 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=44.7
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..++..-+.||.+.+++-+.--....+.. ---..-+.|.+....+++++.+..+.-+..+.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 45778889999999999776443334433 22234577888889999999999999888643
No 387
>PHA02713 hypothetical protein; Provisional
Probab=84.55 E-value=17 Score=34.93 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=18.1
Q ss_pred CCeEEEEEeCCC--eEEEEECCCCe
Q 022074 221 GQKYIYTGSHDS--CVYVYDLVSGE 243 (303)
Q Consensus 221 ~~~~latg~~dg--~i~iwd~~~~~ 243 (303)
++++.++||.|+ .+..||+.+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 578888999888 77888887654
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.48 E-value=12 Score=34.49 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 79 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~ 79 (303)
.+.+|..+|+++++++...=|.|.|+|+.++.....+++
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 588899999999999888888999999999876544444
No 389
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.23 E-value=5.9 Score=36.30 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=43.4
Q ss_pred eeCCCeEEEEE-eCC----CeEEEEECCCCeEEEE-eecCCCCeEEEEECCCCCeEEEEeCCC-----------CEEEee
Q 022074 218 YSTGQKYIYTG-SHD----SCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDG-----------DVVRWE 280 (303)
Q Consensus 218 ~s~~~~~latg-~~d----g~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp~~~~las~s~Dg-----------~i~~Wd 280 (303)
+||+++++|-+ +.. -.+++.|+.+|+.+.. +... ....+.|.+|+..|+-...|. .+++|+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 67888887754 333 4499999999987643 2221 123499999988766555443 267777
Q ss_pred cCCCCc
Q 022074 281 FPGNGE 286 (303)
Q Consensus 281 ~~~~~~ 286 (303)
+....+
T Consensus 209 ~gt~~~ 214 (414)
T PF02897_consen 209 LGTPQS 214 (414)
T ss_dssp TTS-GG
T ss_pred CCCChH
Confidence 765533
No 390
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.64 E-value=6.3 Score=22.61 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCCCEEEEee-CCCeEEEEECCCCceEEEEe
Q 022074 49 TDGRELVAGS-SDDCIYVYDLEANKLSLRIL 78 (303)
Q Consensus 49 ~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~ 78 (303)
|++++|+++. .+++|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5778777765 47889999998887665544
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.44 E-value=14 Score=35.74 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCEEEEeeCC------------CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 42 IFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~D------------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
...=+|+|||+.+.+.+.. +.+.+.+++.+.... ...+.|..+.|+++ +..++-.. ++.|.+=
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va 473 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD-GVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC-CCEEEEEE-CCEEEEE
Confidence 6677899998877776532 223333443332211 33467999999865 66555443 4666552
Q ss_pred ---cCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 110 ---DRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 110 ---d~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
......... .+.....+-.+.+..++|..++.+ +.+..+....+|.+
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYV 524 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEE
Confidence 111110000 011111122233567888888874 45555555556654
No 392
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.37 E-value=49 Score=32.64 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=27.4
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.||+.++|+--.++|.|.+-+.+..+++.+++
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 57788999999999999999988877777765
No 393
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=8.7 Score=35.45 Aligned_cols=113 Identities=11% Similarity=0.151 Sum_probs=70.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-Eec---ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-~~~---h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+++|.+|.||+|.+.+|+--.|.+|.+++...++.... ... .+..+-..+|.+. .-++-.+.. -+-+|-..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~-G~e~y~v~-- 140 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQ-GIEFYQVL-- 140 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecC-CeEEEEEc--
Confidence 34899999999999999999999999998744432211 111 2234777788643 334434433 34555422
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEE-e-CCCcEEEEEc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-G-KDQAIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-~D~~v~lWdl 157 (303)
...+..+....|.-+|.+..+.++.+.++-+ + ..+++.=+.+
T Consensus 141 -pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 141 -PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred -hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 2334455666788899998888887765433 3 3444443443
No 394
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.12 E-value=10 Score=31.61 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=42.3
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE------e--------cccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI------L--------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~------~--------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+.+..+++++++-+.+|.+++||+.+++....- . .....|..+..+ ++|.-+++-+ +|..+.|+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCCEEEEEe-CCCEEEec
Confidence 335567899999999999999999998754211 1 233456666664 4455454443 46667776
Q ss_pred C
Q 022074 111 R 111 (303)
Q Consensus 111 ~ 111 (303)
.
T Consensus 94 ~ 94 (219)
T PF07569_consen 94 P 94 (219)
T ss_pred c
Confidence 4
No 395
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.86 E-value=29 Score=34.26 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=46.7
Q ss_pred eeeeee--CCCeEEEEEeCCCeEEEEECCCCe-EEEEe--ecCCCCeEEEEECCCC---C---eEEEEeCCCCEEEeec
Q 022074 214 FSPVYS--TGQKYIYTGSHDSCVYVYDLVSGE-QVAAL--KYHTSPVRDCSWHPSQ---P---MLVSSSWDGDVVRWEF 281 (303)
Q Consensus 214 ~~~~~s--~~~~~latg~~dg~i~iwd~~~~~-~~~~~--~~h~~~I~~v~~sp~~---~---~las~s~Dg~i~~Wd~ 281 (303)
|..+++ ...+++|.++....|.||-....+ ..... ..|...|-+|+|-++. . .|++++-.|++.+|++
T Consensus 167 WGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 167 WGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 444444 556788888888889988654321 11111 1244568899997754 2 7999999999999998
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.63 E-value=10 Score=31.83 Aligned_cols=54 Identities=24% Similarity=0.443 Sum_probs=42.0
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
++...+|+..++.-+.++|..+|..+|+...++.-.+..++++||.-++-+.|.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~y 270 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILY 270 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEE
Confidence 334557877777778889999999999998888877889999999655444444
No 397
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=31 Score=36.09 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=34.3
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~ 290 (303)
..+.+||..++.....+.|-+-++.|++..|++.++.+...+
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r 280 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR 280 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCcccee
Confidence 356789999999888889999999999999999776444443
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.41 E-value=0.56 Score=46.24 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE-----------ECCCCCeEEEEeCCCCEEEeecCC
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-----------WHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~-----------~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++..++..+-.++.|++..+..... ..+..|..++.+++ .||||..+|+++.||.++.|.+..
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 3446677777888888887754332 33455877666665 599999999999999999998653
No 399
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.42 E-value=7.7 Score=22.04 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCCCeEEEEECCCCCeEE-EEeCC--CCEEEe
Q 022074 251 HTSPVRDCSWHPSQPMLV-SSSWD--GDVVRW 279 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~la-s~s~D--g~i~~W 279 (303)
....-....|||||+.|+ ++..+ |.-.+|
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999998655 44455 565555
No 400
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.09 E-value=30 Score=28.65 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=31.4
Q ss_pred CEEEEeeCCCeEEEEECCCC--ceEEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 52 RELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
+.|..+.....|.+|++.+. +...++ ..-+.|..+.++ ..|++++|--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~-~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYS-EAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEec-cccceEEEEE
Confidence 44544455667999999832 233333 334788899996 4588988874
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.03 E-value=18 Score=35.87 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=53.5
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC----------c--eEEE-E--------ecccCCeEEEEEccC--C
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----------K--LSLR-I--------LAHTSDVNTVCFGDE--S 93 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----------~--~~~~-~--------~~h~~~v~~l~~~~~--~ 93 (303)
.-.+.|..|..|++|+.++..|..| |.|..+... + ..++ + ..+...|..+.|+|. +
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 4557899999999999999998887 666666431 1 1111 1 123346888999875 3
Q ss_pred CcEEEEecCCCeEEEEcCc
Q 022074 94 GHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~ 112 (303)
+..|+.=..|+++|+||+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCeEEEEecCCEEEEEecC
Confidence 5677777889999999985
No 402
>PHA03098 kelch-like protein; Provisional
Probab=79.58 E-value=58 Score=30.98 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCCCEEEEeeCCC------eEEEEECCCCceEEEEecc---cCCeEEEEEccCCCcEEEEecCC-----CeEEEEcCc
Q 022074 49 TDGRELVAGSSDD------CIYVYDLEANKLSLRILAH---TSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRR 112 (303)
Q Consensus 49 ~~g~~l~sgs~Dg------~v~lwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~s~d-----g~v~lWd~~ 112 (303)
.++..++.||.++ .+..||..+.+.. .+..- -.....+.. ++++++.|+.+ ..+..||..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCC
Confidence 3456677776543 4778888877643 22211 111122222 35677777765 245567754
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.28 E-value=49 Score=32.73 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=71.4
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-------C----ce-E-------EEEecccCCeEEEEEc-cCCCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-------N----KL-S-------LRILAHTSDVNTVCFG-DESGH 95 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-------~----~~-~-------~~~~~h~~~v~~l~~~-~~~~~ 95 (303)
..|.-....+..-.+.+.|+++..||.|.+|.+++ . .. . .-......-+..++++ .+..+
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce
Confidence 45665555555556778899999999999996521 0 00 0 0011122345666764 13467
Q ss_pred EEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-----CC-EEEEEeCCCcEEEEEc
Q 022074 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GR-YLISNGKDQAIKLWDI 157 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~-~l~s~~~D~~v~lWdl 157 (303)
++|.++....|.||-..... .......-..|...|-+++|-++ |. .+++++=.|.+-+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888889888643211 11111111124555666665432 32 6778888999999887
No 404
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.96 E-value=33 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 68 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~ 68 (303)
..-.+.|..+..++.|..++-.|.+|.+ |..+
T Consensus 100 ~~V~feV~~vl~s~~GS~VaL~G~~Gi~-vMeL 131 (741)
T KOG4460|consen 100 NPVLFEVYQVLLSPTGSHVALIGIKGLM-VMEL 131 (741)
T ss_pred CcceEEEEEEEecCCCceEEEecCCeeE-EEEc
Confidence 3566889999999999999999999954 4445
No 405
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.08 E-value=69 Score=33.27 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 68 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~ 68 (303)
.|+...-..++|+|....++.|+.+|.|.++-.
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEecc
Confidence 355557788999999999999999999999944
No 406
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=77.40 E-value=57 Score=29.70 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred ECCCCceEEEEecccCCeEEEEE-----ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc-cCeEEEEeCCCC
Q 022074 67 DLEANKLSLRILAHTSDVNTVCF-----GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDG 140 (303)
Q Consensus 67 d~~~~~~~~~~~~h~~~v~~l~~-----~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~ 140 (303)
|..||..+.++.........+.| ..+..++|+++..||.-.+|-+... ++ .+..+.... +.......++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~--t~-~i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLA--TG-EITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETT--T--EEEE---SS-B-TTT-EE-TTS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcc--cC-EEEECccCCCCCccceEEecCC
Confidence 77788777777666555555544 3344467777777776666643211 11 222232221 222123345667
Q ss_pred CEEEEEeCCCcEEEEEccccc
Q 022074 141 RYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 141 ~~l~s~~~D~~v~lWdl~~~~ 161 (303)
+.++-.-.++.|+--|++.++
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--
T ss_pred CeEEEEECCCeEEEEECCcCc
Confidence 776555555778888887654
No 407
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.14 E-value=27 Score=27.76 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=23.6
Q ss_pred CeEEEEeCCCC------CEEEEEeCCCcEEEEEcc
Q 022074 130 GITFIDSRGDG------RYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 130 ~v~~~~~~~~~------~~l~s~~~D~~v~lWdl~ 158 (303)
.+..++|+|.| .+|+....++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68888898854 678899999999999743
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.69 E-value=9.4 Score=39.12 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=74.2
Q ss_pred cceEEEEEcCCCCEEEEe--eCCCeEEEEECCCCceEE-----EEecc------cCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 40 FGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSL-----RILAH------TSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sg--s~Dg~v~lwd~~~~~~~~-----~~~~h------~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
.++.-+..++|+...++. +.+..|..||+++-.... .+..| -..+.++.|+|......+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456677777787765543 344478999997643211 11112 23456778887666667778889999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
++.-+.... .....+ --...++++.|++.|.+++.|-..|++.=|...
T Consensus 181 ~V~~~~~~~---~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLA---QNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhh---hhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 887654211 111111 123568899999999999999999999888643
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=75.54 E-value=52 Score=30.37 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=26.1
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.+..+..+|.+++.++...-|.|.|+|+...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 4667888999999888888899999998754
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.60 E-value=41 Score=31.12 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=59.2
Q ss_pred EEEEEcCCCCEEEEeeC--------------------CCeEEEEECCCCceEEEEeccc--CCeEEEEEcc--CCCcEEE
Q 022074 43 FSLKFSTDGRELVAGSS--------------------DDCIYVYDLEANKLSLRILAHT--SDVNTVCFGD--ESGHLIY 98 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~--------------------Dg~v~lwd~~~~~~~~~~~~h~--~~v~~l~~~~--~~~~~l~ 98 (303)
+..-|.|.-+.++|..+ -.++.+||+.+.+....+.--. ...-.+.|.+ ....-|+
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 44556676667776653 3479999999998876655332 2345667733 3445566
Q ss_pred EecCCCeEEEEcC-ccccCC-Cccceee----ccc------------ccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccc
Q 022074 99 SGSDDNLCKVWDR-RCLNVK-GKPAGVL----MGH------------LEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 159 (303)
Q Consensus 99 s~s~dg~v~lWd~-~~~~~~-~~~~~~~----~~h------------~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~ 159 (303)
.+...++|.+|=. +...-. .+.+... .+. ..-++.+.++.|+++|..+. .+|.+|-||+..
T Consensus 264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 6677777776632 100000 0011110 000 13367888999999987666 589999999875
Q ss_pred c
Q 022074 160 M 160 (303)
Q Consensus 160 ~ 160 (303)
.
T Consensus 344 P 344 (461)
T PF05694_consen 344 P 344 (461)
T ss_dssp T
T ss_pred C
Confidence 3
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.68 E-value=66 Score=27.36 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=62.3
Q ss_pred ceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc-CccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD-RRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd-~~~~~~~~ 118 (303)
.+.+.+++++|+.++.-. .++.-.||-...+....... ....+..-.|.+. +.+.+....+...+++. .... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g--~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASG--TG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCC-CCEEEEEcCCCceEEEEecCCC--cc
Confidence 688999999999776655 22223344333333332222 2235666678654 66666666666666663 1111 11
Q ss_pred ccceeeccccc-CeEEEEeCCCCCEEEEEe---CCCcEEEEEcc
Q 022074 119 KPAGVLMGHLE-GITFIDSRGDGRYLISNG---KDQAIKLWDIR 158 (303)
Q Consensus 119 ~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~---~D~~v~lWdl~ 158 (303)
.+...-..... .|..+.+++||..++-.. .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 11111111112 799999999998876544 34555555443
No 412
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=69.58 E-value=80 Score=27.86 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=34.9
Q ss_pred CCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCeEEEEECC-CCC-eEEEEe
Q 022074 221 GQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQP-MLVSSS 271 (303)
Q Consensus 221 ~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp-~~~-~las~s 271 (303)
+|.+.+++..+| .|.+|+.+ |+++..++.+...+++++|=- +.+ +++|+.
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 456554544444 89999998 999988888877888999854 444 344443
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=69.57 E-value=85 Score=29.77 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=65.8
Q ss_pred cCCCcccceEEEEEcC-CCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC------CcEEEEecCCCe
Q 022074 34 DDGGYSFGIFSLKFST-DGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------GHLIYSGSDDNL 105 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~-~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~s~dg~ 105 (303)
+++|-+.....+-.+. +.+.| ..|+.-..++=.|+..|+.+..+..|... -+.|+|.. +..-+.|-.+..
T Consensus 461 ~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s 538 (776)
T COG5167 461 DDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS 538 (776)
T ss_pred CCCCCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc
Confidence 3455555555555554 34443 34555666777799999988888877665 45555421 223334544555
Q ss_pred EEEEcCccccCCCccceeec--cc--ccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 106 CKVWDRRCLNVKGKPAGVLM--GH--LEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~--~h--~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
|.--|.|... ..+.... .. .....+... ....+++.+|.-|-||+||-
T Consensus 539 vFrIDPR~~g---NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDR 590 (776)
T COG5167 539 VFRIDPRARG---NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDR 590 (776)
T ss_pred eEEecccccC---Cceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehh
Confidence 5545765322 1121111 11 112223222 23459999999999999983
No 414
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.07 E-value=16 Score=34.91 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCeEEEEECCC----CeEEEE--eecC--------------------CCCeEEEEECC----CCCeEEEE
Q 022074 221 GQKYIYTGSHDSCVYVYDLVS----GEQVAA--LKYH--------------------TSPVRDCSWHP----SQPMLVSS 270 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~----~~~~~~--~~~h--------------------~~~I~~v~~sp----~~~~las~ 270 (303)
+...++.+..||.+...+... +..... +..+ .....+++.++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 345677778888888877654 221111 1111 23466777777 77899999
Q ss_pred eCCCCEEEeecCCC
Q 022074 271 SWDGDVVRWEFPGN 284 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~ 284 (303)
+.|++||+||+...
T Consensus 237 ~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 237 SRDHTLRIWSLETG 250 (547)
T ss_dssp ETTSEEEEEETTTT
T ss_pred eCCCeEEEEECCCC
Confidence 99999999998755
No 415
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.59 E-value=14 Score=19.79 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEEE
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~~ 246 (303)
.++.++.+|.++.+|.++|+.+-
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 47778899999999999988753
No 416
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=68.50 E-value=82 Score=27.60 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCEEEEeeCCCeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC------C----
Q 022074 50 DGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------G---- 118 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~------~---- 118 (303)
++++++.|+.+| +.+.++... ....++ .+...|.++......+-+++-+++...++++++...... .
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 346899999999 777776542 222223 344578888876554444444555566999987533210 0
Q ss_pred -ccceeecccccCeEEEEeC-CCCCEEEEEeCCCcEEEEEc
Q 022074 119 -KPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 119 -~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~D~~v~lWdl 157 (303)
+....-.+|..+....... .....+++++.-.+|.++..
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~ 130 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQW 130 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEc
Confidence 0011122344433322222 22334566666777777643
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=68.15 E-value=87 Score=27.84 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEE---E-eecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVA---A-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~---~-~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
.++++++.-..+.|....++.+..+. . +.....++.++++.|||.++++.+.+|+|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56777777777888888887553322 2 223445899999999999999998999885
No 418
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.62 E-value=15 Score=35.11 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=26.4
Q ss_pred ceEEEEEcC----CCCEEEEeeCCCeEEEEECCCCceEE
Q 022074 41 GIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSL 75 (303)
Q Consensus 41 ~v~~l~~s~----~g~~l~sgs~Dg~v~lwd~~~~~~~~ 75 (303)
...+++.+. +..++++-+.|+++|+||+.+++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 345555555 67789999999999999999998743
No 419
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=67.42 E-value=89 Score=27.58 Aligned_cols=118 Identities=11% Similarity=0.035 Sum_probs=62.5
Q ss_pred ceEEEEEcCCCCEEEEeeC------C---CeEEEEECC-CCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 41 GIFSLKFSTDGRELVAGSS------D---DCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~------D---g~v~lwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
..+.+...|+|.+-++--. + ..-+||.+. .+.....+..+-..-+.++|+|+...+.++=+..+.+.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4556777888875554322 0 011345444 45555555555556689999876444444445567787776
Q ss_pred Ccc--ccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCC-cEEEEEcc
Q 022074 111 RRC--LNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR 158 (303)
Q Consensus 111 ~~~--~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl~ 158 (303)
+.. .....+...... .....--.++...+|++.+++..++ .|..|+..
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 542 111111111111 1122333455667787775444443 78888765
No 420
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=67.35 E-value=1.1e+02 Score=28.78 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccC------Ce-E-EEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS------DV-N-TVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~------~v-~-~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+..++.++.++.++-+|.++|+..-+...... .+ . .+.. ..+..++.++.++.|+-+|.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCC
Confidence 55677888899999999999976544322211 00 0 0111 11246677888999998887543
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.02 E-value=1.2e+02 Score=28.45 Aligned_cols=158 Identities=13% Similarity=0.174 Sum_probs=84.0
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
.+.+-| .+.++++ -+-..|.+.=|..+..+ ...++..-..-.+++.++.|++|...++.--.|.+|.+++.......
T Consensus 25 sngvFf-DDaNkql-favrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFF-DDANKQL-FAVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceee-ccCcceE-EEEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 345555 3333343 34445567777765433 22333333334568999999999999999999999999976322111
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
... .+.|..+- ..+..+.|. +...+|.-...| +.+|-....+
T Consensus 102 l~~-----------------------~~~ck~k~---------~~IlGF~W~-----~s~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 102 LEY-----------------------TQECKTKN---------ANILGFCWT-----SSTEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred hHH-----------------------HHHhccCc---------ceeEEEEEe-----cCeeEEEEecCC-eEEEEEchhh
Confidence 000 00011000 011122221 123344444333 4455443322
Q ss_pred -EEEEeecCCCCeEEEEECCCCCe--EEEEeCCCCEEEeecC
Q 022074 244 -QVAALKYHTSPVRDCSWHPSQPM--LVSSSWDGDVVRWEFP 282 (303)
Q Consensus 244 -~~~~~~~h~~~I~~v~~sp~~~~--las~s~Dg~i~~Wd~~ 282 (303)
.+...+.|+..|+-..|.|+.+. |+|+-..+++.-+.+.
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 24455778888999999999884 3444355555555443
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.04 E-value=5.8 Score=40.53 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=43.6
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 225 latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+....|+.|++..+........--.-....++++|||.|.+++.|-.+|++.=+.+..
T Consensus 171 ~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 171 SAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 56677888899887754433222112345789999999999999999999999887653
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=64.99 E-value=5 Score=40.01 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE----------ccCCCcEEEEecCCCeEEEEc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF----------GDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~----------~~~~~~~l~s~s~dg~v~lWd 110 (303)
-|.-+-|-++..++..+-.+++++|....+... ..+.+|...+..++| ..++|+.|+.+..||.|+.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444445777788888899999987766532 234557665555433 134688999999999998885
Q ss_pred C
Q 022074 111 R 111 (303)
Q Consensus 111 ~ 111 (303)
+
T Consensus 264 i 264 (1283)
T KOG1916|consen 264 I 264 (1283)
T ss_pred e
Confidence 4
No 424
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.85 E-value=21 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=26.9
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 228 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
+..+|.+.-||+.+++..-.+.+ -.-.+.|+.|||+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 44577899999999874323333 2367999999999965544
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=64.56 E-value=37 Score=30.24 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEE----ecccCCeEEEEEcc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI----LAHTSDVNTVCFGD 91 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~----~~h~~~v~~l~~~~ 91 (303)
-.+|+|.|||+.++ +...|.|++++ ..+.. ...+ .........++++|
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence 36788999986555 45688898888 34433 1111 11234667888866
No 426
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=64.05 E-value=95 Score=26.72 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=40.8
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.++..---.++...+||..+.+++.++.. ...-|.++ .|+..|+.++....|+.+|++
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TT
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCc
Confidence 34444456788999999999999988864 35678888 577778888777888888865
No 427
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=63.33 E-value=1.1e+02 Score=27.34 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=73.0
Q ss_pred cccccccCcCccc----ccCCCcccc----eEEEEEcCCCCEEEEee--CCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 20 NVTEIHDGLDFSA----ADDGGYSFG----IFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 20 ~~~~~~~~~~~~~----~~~~~~~~~----v~~l~~s~~g~~l~sgs--~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
.|.++|+...+++ +.+.+|++- ....+++.||+++++.. ---+|.|.|+..++...++.- .++..+.-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP 144 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYP 144 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEe
Confidence 5666776665541 122444542 23368889999988864 345799999999987655432 34444433
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCc-cceeecccccCe-EEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.. +..|.+-+.||++--..+........ ....|..-.+.+ ..-.+...+..++=-+.+|.|+--|+...
T Consensus 145 ~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 145 SG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS
T ss_pred cC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC
Confidence 32 35688888899888776642211111 111121111221 11112233444554677788888877653
No 428
>PRK10115 protease 2; Provisional
Probab=63.17 E-value=1.6e+02 Score=29.18 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=60.4
Q ss_pred cceEEEEEcCCCCEEEEeeC-CC----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC-----CeEEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSS-DD----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-----NLCKVW 109 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~-Dg----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~lW 109 (303)
..+..+.++|||++|+-+.. +| ++++.|+.++........... ..++|.++...++.+...+ ..|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 66778999999998777543 23 588899988863322222111 4588975544444444322 355666
Q ss_pred cCccccCCCccceeecccccCeE-EEEeCCCCCEEEEEe---CCCcEEEEEcc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGIT-FIDSRGDGRYLISNG---KDQAIKLWDIR 158 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~---~D~~v~lWdl~ 158 (303)
++... ...-...+.+...... ....+.++.+++..+ .++.+.+++..
T Consensus 205 ~lgt~--~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTP--ASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCC--hhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 65421 1111223332222222 223344666654333 34567777743
No 429
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=61.94 E-value=30 Score=21.82 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCEEEEeeC
Q 022074 42 IFSLKFSTDGRELVAGSS 59 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~ 59 (303)
++++...|||+++++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 678899999999999864
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=61.50 E-value=1.2e+02 Score=27.23 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=26.5
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
|.|.-+|...++. ..+.......+.++|+|+|+++++-..+
T Consensus 164 g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 5677777766553 2332222346899999999988775543
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=60.84 E-value=43 Score=27.77 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=37.3
Q ss_pred eEEEEEeCCCeEEEEECCC--CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 223 KYIYTGSHDSCVYVYDLVS--GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~--~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..|..+.....|.+|++.+ .+.+.+|. .-++|..+.++.-|.+|+|-=++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeec
Confidence 3444445667899999873 34566775 348999999999999999875543
No 432
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=60.80 E-value=2.4e+02 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=14.7
Q ss_pred cccCeEEEEeCCCCCEEEEEeCC
Q 022074 127 HLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 127 h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
|-.+..+++.+|+|..++.-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 44566677778887766554433
No 433
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.45 E-value=1.2e+02 Score=26.62 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=77.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|-+..+.++.|+|+.+.|.+-.+...-.|+=...|++..++.- --..-..+.|. .++.+.++--.+.++.++-+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCC
Confidence 56667799999999999999888877666665556766544321 11233566663 33555555566777777654311
Q ss_pred cCC------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 115 NVK------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 115 ~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
... .-+.........+.-.+++.+.++.|..+-.-+.++||...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 000 00111111225568889999998888888887888888765
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.44 E-value=1.5e+02 Score=29.67 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=24.6
Q ss_pred eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 209 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 209 ~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
+....|.| .+.++..|+.=.+|+++|+||+...
T Consensus 149 i~qv~WhP-~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 149 IKQVRWHP-WSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEEEcC-CCCCCCeEEEEecCCEEEEEecCCC
Confidence 34455555 3556788999999999999999653
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=59.78 E-value=29 Score=32.64 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQV-AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~-~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....|+|.||..|.|++||-. |... ..+.+-...|..+..+.+|.++++.+. ..|.+-|++..
T Consensus 571 TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence 345689999999999999953 3332 335666778999999999998776664 57777887654
No 436
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.62 E-value=18 Score=20.67 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=16.2
Q ss_pred CCCEEEEeeCCCeEEEEECCC
Q 022074 50 DGRELVAGSSDDCIYVYDLEA 70 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~ 70 (303)
.+..++.++.||.++-+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466899999999999998764
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=59.61 E-value=1.6e+02 Score=27.78 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=31.2
Q ss_pred CCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCCCeEEEEeCC-----CCEEEeecCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWD-----GDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~~~las~s~D-----g~i~~Wd~~~ 283 (303)
+++..+.|+ .+.+||.++.+ .+..+.........+. -++++.+.||.+ .++..+|+..
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 466666664 46788887653 2332322222222222 367778887754 3466666543
No 438
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=59.26 E-value=25 Score=18.47 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=14.5
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEE
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVY 66 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lw 66 (303)
..++.+++|+.+++-+....|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 456666677666666555555543
No 439
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.03 E-value=1.3e+02 Score=26.45 Aligned_cols=53 Identities=28% Similarity=0.349 Sum_probs=35.8
Q ss_pred EcCCCCEEEEeeCC-----CeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEe
Q 022074 47 FSTDGRELVAGSSD-----DCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 47 ~s~~g~~l~sgs~D-----g~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
||+||.+|++.-+| |.|-|||...+ +.+.++..|.-+-..+.+.++ +..++.+
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-Grtlvva 179 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVA 179 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEe
Confidence 89999998876433 56899998754 233456666666677888654 6665544
No 440
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=57.91 E-value=1.7e+02 Score=27.62 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
.+..++.++.||.++.+|.++|+.+-.++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456788889999999999999998877653
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.77 E-value=1.6 Score=40.40 Aligned_cols=114 Identities=12% Similarity=0.217 Sum_probs=72.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.+-....|.+.+..++.++.+..+..||-..... .+. ...+..-.++|..+.+..++-+.+.+.+.+||+... .
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e----y 108 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE----Y 108 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhccee-ccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhh----h
Confidence 3445567888888899999999999998755432 222 233445566775444455667788999999997421 1
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
......+-...-.-+.+++....++.+...+.+++++.+.
T Consensus 109 tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 109 TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred HHHHhccCcchHHHHhhccCCccccccccccceEEEeccc
Confidence 1111122122222245667677778888889999998764
No 442
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.51 E-value=35 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEE
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
.+.+++.||.++-+|.++|+..-+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 4666799999999999999876444
No 443
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=55.75 E-value=2e+02 Score=27.84 Aligned_cols=66 Identities=11% Similarity=0.257 Sum_probs=38.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEEC--CCCceEEEEecccCCeEEEEEccCC---CcEEEEecCCCeEEEEcCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~--~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~s~dg~v~lWd~~ 112 (303)
.|+..++|. ||+.++-- .+++-+- +-|. ....++-..|..++|.|.. ...++......-|.+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT----~L~l~~gE~kfGd--s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLT----DLQLHNGEPKFGD--SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEE----eeeeeCCccccCC--ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999998 66654432 1222211 1111 1234555679999997752 2244556666789999763
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=55.68 E-value=1e+02 Score=26.80 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec------CCCeEEEEcCc
Q 022074 59 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS------DDNLCKVWDRR 112 (303)
Q Consensus 59 ~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s------~dg~v~lWd~~ 112 (303)
....|.+||..+.+....-.+-.+.|..+.|. ++.++++.|. ....+..||..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecC
Confidence 35569999998887554333445789999996 3466777664 34567788865
No 445
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=54.65 E-value=1.3e+02 Score=26.49 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC-C----eEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-~----v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
=+.+|....+|.+|++.-.-.+|.+.|..+|+..-++.+... . -...++.+ +.+.+-.+..+++|.++|-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcC
Confidence 478889999999999998888999999999987766654411 1 11234433 2444445567889999983
No 446
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.73 E-value=1.9e+02 Score=27.00 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=54.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE------------------------EE-eccc-C--------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL------------------------RI-LAHT-S-------- 82 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~------------------------~~-~~h~-~-------- 82 (303)
........++++|+|+.++++ .||.-.|+.....+... .+ ..-+ .
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC
Confidence 344457889999999988884 56667777643222110 00 0000 0
Q ss_pred -CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 83 -DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 83 -~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.+..+ | . |.+|+..+ ++.|.+||.. +++.++.+. ..+|..+.|++++++++-.+. ..+.+++..
T Consensus 109 ~~~~~I-f-~--G~LL~~~~-~~~i~~yDw~----~~~~i~~i~--v~~vk~V~Ws~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 109 FSVEKI-F-G--GNLLGVKS-SDFICFYDWE----TGKLIRRID--VSAVKYVIWSDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp S-EEEE-E----SSSEEEEE-TTEEEEE-TT----T--EEEEES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred cccceE-E-c--CcEEEEEC-CCCEEEEEhh----HcceeeEEe--cCCCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence 01111 1 1 45555554 4489999975 334444442 234788889999998887765 577777643
No 447
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=51.38 E-value=1.6e+02 Score=25.37 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=93.9
Q ss_pred EEEEcCCCCEEEEeeCCC--eEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 44 SLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg--~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.+.|..+|..+-+.+.-| .|+.+|+.+++...+.. ...-.-..++... +++..-.=.++...+||.... +.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl----~~ 122 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTL----KK 122 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTT----EE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccc----eE
Confidence 356766787777777766 68999999998654332 1222223344322 233333445778889997532 23
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
...+.- ...=+.++ .++..|+.......+.++|.......... ...
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i-------------------------------~V~ 168 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI-------------------------------QVT 168 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-------------------------------E-E
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-------------------------------EEE
Confidence 333321 22233443 34555655554577777776532211100 000
Q ss_pred ecccceee--eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec------------C---CCCeEEEEECCC
Q 022074 201 KGHSVLRT--LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------H---TSPVRDCSWHPS 263 (303)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~------------h---~~~I~~v~~sp~ 263 (303)
.+...... .+.+. +|...|=--....|...|..+|+.+..+.. + .+=.+.+||.|.
T Consensus 169 ~~g~pv~~LNELE~i-------~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 169 DNGRPVSNLNELEYI-------NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp ETTEE---EEEEEEE-------TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred ECCEECCCcEeEEEE-------cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 00000000 11111 466666666778899999999988776631 0 234889999887
Q ss_pred CC-eEEEE
Q 022074 264 QP-MLVSS 270 (303)
Q Consensus 264 ~~-~las~ 270 (303)
.+ +++||
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 65 67777
No 448
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.65 E-value=2.8e+02 Score=28.01 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccC--------CeEEEEEcc---------------CCCcEEEEecCCCeEE
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK 107 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~--------~v~~l~~~~---------------~~~~~l~s~s~dg~v~ 107 (303)
+..++.++.++.|.=+|.++|++.-++..... .+..+.+.. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66788888899999999999987644432211 112233311 1234677788888887
Q ss_pred EEcCc
Q 022074 108 VWDRR 112 (303)
Q Consensus 108 lWd~~ 112 (303)
-.|.+
T Consensus 274 ALDA~ 278 (764)
T TIGR03074 274 ALDAD 278 (764)
T ss_pred EEECC
Confidence 77754
No 449
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=49.82 E-value=2.3e+02 Score=26.65 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=37.1
Q ss_pred CeEEEEEeCCCeEEEEECCCCe------EEEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEE
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGE------QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVR 278 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~------~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~ 278 (303)
+.+|+++-..+.|+...+.... ....+.. ..+|.+|+-+||| .+.+..+.+|.+.-
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~ 431 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK 431 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc
Confidence 5667777677778777775331 1222333 5799999999997 66666667777653
No 450
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=47.39 E-value=1.5e+02 Score=26.17 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=48.2
Q ss_pred eeeeeeCCCeEEEEEeCCCeEEEEECC------CCeE-EEEeec-----CCCCeEEEEECCCCCe------------EEE
Q 022074 214 FSPVYSTGQKYIYTGSHDSCVYVYDLV------SGEQ-VAALKY-----HTSPVRDCSWHPSQPM------------LVS 269 (303)
Q Consensus 214 ~~~~~s~~~~~latg~~dg~i~iwd~~------~~~~-~~~~~~-----h~~~I~~v~~sp~~~~------------las 269 (303)
|-..++|.+.+.++....+...+||.. ..+. +-.+.. -....+.+.|+....+ ++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 445577888888988899999999985 2222 223321 2346788888864333 677
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
+++||+|.-|...
T Consensus 106 ~tEdGTisaW~p~ 118 (336)
T TIGR03118 106 VTEDGTLSGWAPA 118 (336)
T ss_pred EeCCceEEeecCc
Confidence 8899999999954
No 451
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=47.01 E-value=2.7e+02 Score=27.04 Aligned_cols=67 Identities=9% Similarity=0.242 Sum_probs=41.3
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEe-cCCCeEEEEcC
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDR 111 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~-s~dg~v~lWd~ 111 (303)
.+-|+|....|++=.....-.++++..+....+. ....+.|.|.||.. ++++|+.+ +..=--++||-
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEecC
Confidence 4789998887777665554456666554322221 23457799999975 56666555 33223468984
No 452
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=45.98 E-value=2.3e+02 Score=25.55 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCEEEEee-----------CCC-eEEEEECCC--Cce--EEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 42 IFSLKFSTDGRELVAGS-----------SDD-CIYVYDLEA--NKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-----------~Dg-~v~lwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
..+|+|.++|+..++-. ..+ .|.+++..+ |+. ...+.........+++.+ ++ +++ ++...-
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCeE
Confidence 56789999999766642 223 677776543 221 122332334457777754 45 554 444433
Q ss_pred EEEEcCccccCCC-ccceeecc-------cccCeEEEEeCCCCCEEEEEe
Q 022074 106 CKVWDRRCLNVKG-KPAGVLMG-------HLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 106 v~lWd~~~~~~~~-~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~~ 147 (303)
.++.|........ +....+.+ +......+.+.++|.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3343542111111 11111111 123356778889988777655
No 453
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=45.01 E-value=53 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred EEEEEcCCCCEEEEee-CCCeEEEEECCC
Q 022074 43 FSLKFSTDGRELVAGS-SDDCIYVYDLEA 70 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~ 70 (303)
..|.++|++++|.+++ ..+.|++|+.+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 5788999999887765 567899987653
No 454
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=39.92 E-value=2.3e+02 Score=23.98 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEE-CCCCceEE-EEecc-c-CCeEEEEEccCCCcEEEEec---CCCeEEEEcCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSL-RILAH-T-SDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRC 113 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd-~~~~~~~~-~~~~h-~-~~v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~ 113 (303)
.+..-+|+++|...++...+...+++. ..++.... .+... . ..|..+.++++ +.+++-.. .++.|.+=-+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpD-G~RvA~v~~~~~~~~v~va~V~- 144 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPD-GTRVAVVVEDGGGGRVYVAGVV- 144 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCC-CcEEEEEEecCCCCeEEEEEEE-
Confidence 577778999988777766666677773 33333221 12111 1 27999999875 55554333 34566553221
Q ss_pred ccCCC------ccceeecccccCeEEEEeCCCCCEEEEEeC
Q 022074 114 LNVKG------KPAGVLMGHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 114 ~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
....+ .+..........+..++|.+++.+++.+..
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 00111 111222223457889999998877665544
No 455
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=39.58 E-value=3.2e+02 Score=25.52 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=50.1
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCC--CCEEEEeeC-CCeEEEE-ECCCCceEE----EEecc--------
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSS-DDCIYVY-DLEANKLSL----RILAH-------- 80 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~sgs~-Dg~v~lw-d~~~~~~~~----~~~~h-------- 80 (303)
+.++||+..+....+.+|.+--.+...-|.|..+ ..+-.+|+. .++|.+| ..+.+.... .+..-
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 6679999988888878887654556778888754 555444443 3345444 434443221 11110
Q ss_pred ---------cCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 81 ---------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 81 ---------~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
..-++.+..+.++.-+.+++=..|.||.||+..
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 123577777665444455666699999999864
No 456
>PHA03098 kelch-like protein; Provisional
Probab=39.00 E-value=2.6e+02 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.2
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCce
Q 022074 50 DGRELVAGSSD------DCIYVYDLEANKL 73 (303)
Q Consensus 50 ~g~~l~sgs~D------g~v~lwd~~~~~~ 73 (303)
+++..+.||.+ ..+..||..+++.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 56666777632 3578899887754
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=38.08 E-value=2.5e+02 Score=23.83 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=43.6
Q ss_pred EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-C--CeEEEEcCccccCCCcccee--ecccccCeEEEEeC
Q 022074 63 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-D--NLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSR 137 (303)
Q Consensus 63 v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-d--g~v~lWd~~~~~~~~~~~~~--~~~h~~~v~~~~~~ 137 (303)
-.+||+.+++....-...+-.+..=.+. ++++++.+|+. + ..+|+++............. ......---....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4689999887543222233333333454 46889988875 3 35777774210000000000 00111111122345
Q ss_pred CCCCEEEEEeCC
Q 022074 138 GDGRYLISNGKD 149 (303)
Q Consensus 138 ~~~~~l~s~~~D 149 (303)
+||+.|+.||.+
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 789999998876
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=37.77 E-value=2.9e+02 Score=24.51 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=55.6
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+-...++++.+.+++.+++++ ..|.+..-....++....+. .-...+..+.+.+ ++..++. +..|.+++=... ..
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d-~G 245 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPD-DL 245 (334)
T ss_pred CCcceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCC-CC
Confidence 334578999999988766554 55655332112233232222 2335677888865 3555554 456776542111 11
Q ss_pred CCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 116 VKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 116 ~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.+.+....... -...+..+.+.++++.++ ++.++.+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 11111111100 112466677777776554 44556544
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.76 E-value=1.5e+02 Score=27.69 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=61.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-Eecc-cC----CeE-EEEEccCCCcEEEEecCCCeEEEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAH-TS----DVN-TVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-~~~h-~~----~v~-~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
..-..|..+-..|||+.+++-+. .++.++++.......+ +... .+ .|+ .+.. -..+.-++.++.||-|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l-L~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL-LSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH-HhCceeEEEEcCCCceeee
Confidence 33446788889999998887655 5788998877654322 1111 11 122 1111 1235567788999999887
Q ss_pred -cCccccCC-CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 110 -DRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 110 -d~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
|.+..... -..++.+.-....+..+.-..+.+-+++-+..|++.++-
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~ 344 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFY 344 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeee
Confidence 54311110 011111211122333333233334456666666666554
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=2.6e+02 Score=23.40 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=30.7
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEee------------cCCCCeEEEEECCCC-CeEEEE
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALK------------YHTSPVRDCSWHPSQ-PMLVSS 270 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~------------~h~~~I~~v~~sp~~-~~las~ 270 (303)
|...|---.+..|-..|..+|+.+..++ .|..-.+.+++-|++ ++++||
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4444444455556666666666544432 344567899999987 678887
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=36.00 E-value=2.2e+02 Score=24.41 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=38.1
Q ss_pred eEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE---EC-CCCCeEEEEeCCCCEEE
Q 022074 223 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS---WH-PSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~---~s-p~~~~las~s~Dg~i~~ 278 (303)
..|+.|.++|.|+|.|......+..++-..-|+.=.+ |. -|. .++.++.||.|.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdy-RI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDY-RIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccce-EEEEEeCCCEEEE
Confidence 5799999999999999988887777765555553222 22 222 3666667888765
No 462
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.87 E-value=2.2e+02 Score=24.44 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=37.8
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc--cCCCcEEEEecCCCeEEE
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG--DESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~s~dg~v~l 108 (303)
.++.|..+|.|.|.|...-....++.-..-++.-.+.. .+.+.+++.++.||.|++
T Consensus 197 cLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred eEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 68999999999999998877665554443344322221 113457788888988875
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=35.47 E-value=3.2e+02 Score=24.27 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=58.0
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc----cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
...++++.+.++++.+++| ..|.+++=..+.+........+ ...+..+.+.+ .++.+ .++.+|.+.. ... .
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~~-S~d-~ 288 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLLV-SKD-G 288 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEEE-eCC-C
Confidence 4568889999988876665 5676543234555433322211 13467777865 34454 4556776654 211 1
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
..+........+-......+.+..+++.++ .|..|.|.-|+
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 112221111011123455555555555544 55668877775
No 464
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=32.71 E-value=1.7e+02 Score=25.64 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=48.4
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC-----CeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-----PVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~-----~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+|.+|++.-.-..|.+.|.++|+.+=.+.+... +-...+|-.|.+++-.+..+++|.++|-.
T Consensus 153 ~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 153 DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 5678999999999999999999988767654411 12235666777788788899999999974
No 465
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=32.31 E-value=3.5e+02 Score=23.80 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=48.8
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
.+....++. +...+..|.|+. ..+.|+.... .....+.+..+.-. +++++++.++.-....-||... ....+..
T Consensus 108 ~i~~l~~~~-~~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~--~~w~~~~ 182 (302)
T PF14870_consen 108 GITALGDGS-AELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRS-SDGRYVAVSSRGNFYSSWDPGQ--TTWQPHN 182 (302)
T ss_dssp EEEEEETTE-EEEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE--TTS-EEEEETTSSEEEEE-TT---SS-EEEE
T ss_pred EEEEcCCCc-EEEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEEC-CCCcEEEEECcccEEEEecCCC--ccceEEc
Confidence 333333443 333445565422 2334444333 33344567777664 5677887776655566787320 0111111
Q ss_pred eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 123 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 123 ~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
+ .-...+..+.|.+++.+.+.+ +.+.+++=+
T Consensus 183 r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 183 R--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred c--CccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 1 123568899999998776644 888888776
No 466
>PHA02790 Kelch-like protein; Provisional
Probab=31.80 E-value=4.4e+02 Score=24.78 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=45.5
Q ss_pred CCCEEEEeeCCC---eEEEEECCCCceEEEEec--cc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 50 DGRELVAGSSDD---CIYVYDLEANKLSLRILA--HT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 50 ~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~--h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
+|+..+.||.++ ++..||..+++... ... .. .....+.. ++++.+.|+ .+..||.+.. .......
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~--~W~~~~~ 432 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSN--TWTLIDD 432 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCC--cEeEcCC
Confidence 577777777654 46788887765432 111 11 11122222 255666664 4667776422 2222221
Q ss_pred ecccccCeEEEEeCCCCCEEEEEeCC-----CcEEEEEc
Q 022074 124 LMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDI 157 (303)
Q Consensus 124 ~~~h~~~v~~~~~~~~~~~l~s~~~D-----~~v~lWdl 157 (303)
+.........+.. ++...+.||.+ .++..||.
T Consensus 433 m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 433 PIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 2111112222222 56677888765 23445554
No 467
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.89 E-value=2.5e+02 Score=21.57 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=32.8
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
+.++.-|.|| |+|.|..++.+..... -..|+.++..+.+.+.|+-...|+.-.
T Consensus 51 kv~L~VS~~G-i~vvd~~Tk~~i~~~~--i~~ISfca~D~~d~r~FayIakd~~~~ 103 (138)
T cd01268 51 KAVLWVSGDG-LRVVDEKTKGLIVDQT--IEKVSFCAPDRNFDRGFSYICRDGTTR 103 (138)
T ss_pred EEEEEEecCc-EEEEecCCCcEEEEEe--EEEEEEEecCCCCCcEEEEEecCCCcc
Confidence 3567778888 9999998887654321 123444444445566777666666543
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.29 E-value=1.2e+02 Score=30.38 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK 72 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~ 72 (303)
+.++.-+|.|+-++.+..||+|++|+.-..+
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 6778888999999999999999999876554
No 469
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=30.24 E-value=1.9e+02 Score=20.09 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=30.5
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~ 282 (303)
+.|..||.++ ......--...+.+..+|++++ .++....++|++++..
T Consensus 36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4466676543 2222222245689999999885 4555567899998864
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.06 E-value=4.4e+02 Score=24.23 Aligned_cols=129 Identities=6% Similarity=-0.066 Sum_probs=0.0
Q ss_pred cccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----eEEEEecccCC--eEEEEEcc
Q 022074 20 NVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSD--VNTVCFGD 91 (303)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~~~--v~~l~~~~ 91 (303)
++..-++..+.. .+...+-...+.++.|.++|..++++ .+|.+ ++....+. ........... +..+.+.+
T Consensus 260 ~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~ 337 (398)
T PLN00033 260 NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS 337 (398)
T ss_pred cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcC
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
+..++.++.+|.+.... ....+......-..-......+.|.++++-+++| .+|.|.-|
T Consensus 338 --d~~~~a~G~~G~v~~s~--D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 338 --KKEAWAAGGSGILLRST--DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred --CCcEEEEECCCcEEEeC--CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=30.02 E-value=4.8e+02 Score=24.63 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCCCEEEEeeCCCeEEEE-ECCCCceE--EEEec---ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 49 TDGRELVAGSSDDCIYVY-DLEANKLS--LRILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lw-d~~~~~~~--~~~~~---h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
..|.-+++++.||-|.-| |+..+... ..+.. ....+..+.- ..+.+.|++-+.+|++.++-.. .++.-
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st-----~~~~l 351 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST-----SEKLL 351 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc-----cCcce
Confidence 456678889999998777 55443211 11111 1123333332 1235567777888888876521 11122
Q ss_pred eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 123 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 123 ~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.+..-.++..-++++|.+.++++-. .+.++++.+...
T Consensus 352 L~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 352 LFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred ehhhhhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 2222334556678899998888875 488999988754
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.51 E-value=1.2e+02 Score=24.05 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=25.9
Q ss_pred CeEEEEECCCCC------eEEEEeCCCCEEEeecCC
Q 022074 254 PVRDCSWHPSQP------MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 254 ~I~~v~~sp~~~------~las~s~Dg~i~~Wd~~~ 283 (303)
.+.+++|||.|- +||.-..++.+.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 789999999652 899999999999999764
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=28.51 E-value=4.2e+02 Score=23.52 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCC-------ceEEEEec-----ccCCeEEEEEccC-----------CCcEEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KLSLRILA-----HTSDVNTVCFGDE-----------SGHLIY 98 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-------~~~~~~~~-----h~~~v~~l~~~~~-----------~~~~l~ 98 (303)
-+.|+++|.+..-++....++..+||.... .+...+.. .....+-+.|+.. ....|+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 467999999988888778889999999721 12222221 1123445555321 123577
Q ss_pred EecCCCeEEEEcCccccCCC--ccceeec-ccccCe-EEEEeC--CCCCEEEEEe-CCCcEEEEEcccccCCcccccCcc
Q 022074 99 SGSDDNLCKVWDRRCLNVKG--KPAGVLM-GHLEGI-TFIDSR--GDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~--~~~~~~~-~h~~~v-~~~~~~--~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
.+++||+|.-|..... .+. .....+. +...+| ..+++. ..+.+|..+. ..++|.++|-.-.+... ...+.
T Consensus 105 f~tEdGTisaW~p~v~-~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g~F~ 181 (336)
T TIGR03118 105 FVTEDGTLSGWAPALG-TTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PGSFI 181 (336)
T ss_pred EEeCCceEEeecCcCC-cccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CCCcc
Confidence 8999999999984311 110 0111121 111233 223332 2344554433 57888888754221100 00000
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 249 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-- 249 (303)
.|....--.+ --+..+.+.-.+.+..+ .++++.=+.|-.-|.|-++|. .|+++.++.
T Consensus 182 -----------DP~iPagyAP--FnIqnig~~lyVtYA~q-------d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~ 240 (336)
T TIGR03118 182 -----------DPALPAGYAP--FNVQNLGGTLYVTYAQQ-------DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS 240 (336)
T ss_pred -----------CCCCCCCCCC--cceEEECCeEEEEEEec-------CCcccccccCCCcceEEEEcC-CCcEEEEeccC
Confidence 0000000000 01122222111111110 112222344556789999997 578887773
Q ss_pred cCCCCeEEEEECC------CCCeEEEEeCCCCEEEeecCCC
Q 022074 250 YHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ~h~~~I~~v~~sp------~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.-...|.|+..| .+.+|+.-=.||+|..+|....
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 3345668888866 4678888888999999997543
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.14 E-value=4e+02 Score=23.16 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=45.4
Q ss_pred CCcccceEEEEEcCCCCEEEEee------CCCeEEEEECCCCceEEEEecc-----cCCeEEEEEccCCC-cEEEEec-C
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESG-HLIYSGS-D 102 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs------~Dg~v~lwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~-~~l~s~s-~ 102 (303)
++-+..|.++.|..+.+.+++|. ....+..||.++.... .+..- .++|..+.+...+. +..+.|. .
T Consensus 33 ~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~ 111 (281)
T PF12768_consen 33 NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA 111 (281)
T ss_pred CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEEeeccCCceEEEeceec
Confidence 45677899999996555555554 3456888999887542 23331 26788887744333 3444443 2
Q ss_pred --CCeEEEEcC
Q 022074 103 --DNLCKVWDR 111 (303)
Q Consensus 103 --dg~v~lWd~ 111 (303)
+..+.-||-
T Consensus 112 ~g~~~l~~~dG 122 (281)
T PF12768_consen 112 NGSTFLMKYDG 122 (281)
T ss_pred CCCceEEEEcC
Confidence 335666774
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=26.59 E-value=3.1e+02 Score=25.74 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--E---E-ec-ccCCeEEEEEccCC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--R---I-LA-HTSDVNTVCFGDES 93 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~---~-~~-h~~~v~~l~~~~~~ 93 (303)
-..|+|.|||+.+++--..|.|++++..++.... . + .. -.++...++++|+.
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5688999999776665446899999765543211 1 1 11 24677888987653
No 476
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=26.42 E-value=18 Score=18.37 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=5.4
Q ss_pred EECCCCCe
Q 022074 259 SWHPSQPM 266 (303)
Q Consensus 259 ~~sp~~~~ 266 (303)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47787764
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=25.55 E-value=3.1e+02 Score=20.98 Aligned_cols=105 Identities=12% Similarity=0.193 Sum_probs=58.6
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCce-------EEEEecccCCeEEEEEcc----CCCcEEEEecCCCeEEEEcCccc
Q 022074 46 KFSTDGRELVAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGD----ESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 46 ~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-------~~~~~~h~~~v~~l~~~~----~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|......|++++.-|+|.|.+...... ..++..-+..|++++-.+ +..+.|+.|+.. .+-.||....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccC
Confidence 3455555788888999999998764421 123455667788886532 235567777654 7778997421
Q ss_pred cCCCccceeecccccCeEEEEeC---C-CCCEEEEEeCCCcEEEEEc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSR---G-DGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~---~-~~~~l~s~~~D~~v~lWdl 157 (303)
.... +..-.++|.++.+. . +.++++.|| +-.|.=||.
T Consensus 84 ---~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~ 124 (136)
T PF14781_consen 84 ---SDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDY 124 (136)
T ss_pred ---chhh--hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCC
Confidence 1111 11233566666542 2 334444443 344444443
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=25.27 E-value=1.3e+02 Score=30.16 Aligned_cols=59 Identities=14% Similarity=0.351 Sum_probs=38.7
Q ss_pred eCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 219 STGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 219 s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+|.++-++.+..||.|.+|+...+.. +.+. ..|-..+.|...| |+++..|+...-|.-.
T Consensus 23 hp~~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 23 HPGGQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cCCCceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc--eEEEeccchhheeecc
Confidence 46788899999999999999876543 3222 2244445554444 5555567777777643
No 479
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=25.15 E-value=8e+02 Score=25.61 Aligned_cols=110 Identities=14% Similarity=0.009 Sum_probs=55.2
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|+..-..++..|. .|+.|+=...+ .||+++-. .....+....+.....++. +...++.++.++.+...++...
T Consensus 445 ~gf~~~~~Tif~S~i~g~~lvQvTs~-~iRl~ss~--~~~~~W~~p~~~ti~~~~~--n~sqVvvA~~~~~l~y~~i~~~ 519 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTINGNQLVQVTSN-SIRLVSSA--GLRSEWRPPGKITIGVVSA--NASQVVVAGGGLALFYLEIEDG 519 (1096)
T ss_pred ccccccCceEEEEccCCceEEEEecc-cEEEEcch--hhhhcccCCCceEEEEEee--cceEEEEecCccEEEEEEeecc
Confidence 45554445554442 34443333333 48888765 2233444444444444442 2446666776666666665321
Q ss_pred cCCCccceeec--ccccCeEEEEeCCCC------CEEEEEeCCCcEEEE
Q 022074 115 NVKGKPAGVLM--GHLEGITFIDSRGDG------RYLISNGKDQAIKLW 155 (303)
Q Consensus 115 ~~~~~~~~~~~--~h~~~v~~~~~~~~~------~~l~s~~~D~~v~lW 155 (303)
. ..... .-...|.|++++|-| ++++.|-.+..+.+-
T Consensus 520 ~-----l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 520 G-----LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred c-----eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 1 11111 123468899888642 256666655554444
No 480
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=24.93 E-value=2.5e+02 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.5
Q ss_pred cCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 129 EGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
-.|.++....+|+.+.+|..| +.+|.+.
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 457788777789988888887 8899865
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.93 E-value=1.8e+02 Score=30.82 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=48.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECC----CCce--------------------EEEEe-cccCCeEEEEEccCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLE----ANKL--------------------SLRIL-AHTSDVNTVCFGDESG 94 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~----~~~~--------------------~~~~~-~h~~~v~~l~~~~~~~ 94 (303)
..|.|+....+|+.+++| .|| .||++. .+-. ..++. .+.++|..+.. .++.
T Consensus 179 ~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I-D~SR 254 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI-DNSR 254 (1311)
T ss_pred ceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe-cccc
Confidence 458899988899887766 555 345542 2210 01223 45678888888 4567
Q ss_pred cEEEEecCCCeEEEEcCcc
Q 022074 95 HLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~ 113 (303)
..+.+=++.|+|..||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 7888999999999999853
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=24.39 E-value=5.5e+02 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=24.9
Q ss_pred CeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 254 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 254 ~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|.+++..+..+.|.+...+|.|++|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488888988889999999999999999964
No 483
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=24.16 E-value=1.5e+02 Score=16.85 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCeEEEEeCCC
Q 022074 253 SPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 253 ~~I~~v~~sp~~~~las~s~Dg 274 (303)
....++++.++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 4578999999999999998776
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=3.1e+02 Score=26.28 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=40.7
Q ss_pred eCCCeEEEEEeCCCeEEEEEC---------CCCe------------EEEEeecCCCCeEEEEECCCC---CeEEEEeCCC
Q 022074 219 STGQKYIYTGSHDSCVYVYDL---------VSGE------------QVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDG 274 (303)
Q Consensus 219 s~~~~~latg~~dg~i~iwd~---------~~~~------------~~~~~~~h~~~I~~v~~sp~~---~~las~s~Dg 274 (303)
++.|+.++-.|.+|.+-++=. +.|+ .+.+-. ..-.+..++|+|+. ..|.--+.|.
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceEEEEecCc
Confidence 556777777777776544421 1221 111111 23467789999985 5677777799
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++++....
T Consensus 191 viRiy~lS~~ 200 (741)
T KOG4460|consen 191 VIRIYSLSEP 200 (741)
T ss_pred EEEEEecCCc
Confidence 9999997644
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.15 E-value=2.7e+02 Score=26.71 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE--CCCCCeEEEEeCCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW--HPSQPMLVSSSWDG 274 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~--sp~~~~las~s~Dg 274 (303)
.+.+++.+..+|.++.+|.++|+.+-.++....-.-+-.- ....+|++.++.-|
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~G~g 526 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSGWG 526 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEEeccC
No 486
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=22.76 E-value=1.1e+02 Score=22.37 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.3
Q ss_pred ccccCCCcccceEEEEEcCCCCEEEEeeCCCe
Q 022074 31 SAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 62 (303)
Q Consensus 31 ~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~ 62 (303)
|..|+.||-.+|.-++..-+|+++.-|-..+.
T Consensus 60 s~~d~~g~~rpv~fla~rvngqyimeglas~f 91 (147)
T KOG3356|consen 60 SMTDEHGHQRPVAFLAGRVNGQYIMEGLASSF 91 (147)
T ss_pred cccccCCcCcceEEEeccccceeeehhhcccc
Confidence 36678999999999999999999887765553
No 487
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.73 E-value=5.3e+02 Score=22.72 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=42.6
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEE-cCccccCCCcccee--eccc--ccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW-DRRCLNVKGKPAGV--LMGH--LEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW-d~~~~~~~~~~~~~--~~~h--~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
+.+-+..++++.|+|+...+|++..+ +.-.+| +. ++..+++ +.+- .++|.. -.++.+.++--+++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~-----~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~ 151 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTK-----EGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccccceeeCCCcceEEEecCC-CceEEEEec-----CCceEEEecccccCChhHeEE---ecCCEEEEEehhcce
Confidence 45555679999998775555555554 444444 32 2333322 2222 233444 345667777778888
Q ss_pred EEEEEccc
Q 022074 152 IKLWDIRK 159 (303)
Q Consensus 152 v~lWdl~~ 159 (303)
+.++.+..
T Consensus 152 l~~~~vd~ 159 (316)
T COG3204 152 LYLFTVDA 159 (316)
T ss_pred EEEEEEcC
Confidence 88887654
No 488
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=22.30 E-value=1.4e+02 Score=15.81 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVY 66 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lw 66 (303)
|.+++.++ ++++++..-+-+|+|
T Consensus 4 i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEec
Confidence 66777664 588888888889987
No 489
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=22.04 E-value=3.7e+02 Score=20.57 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=45.2
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEE-----------EECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDC-----------SWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v-----------~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+.+..||.+.+++..+|+.+..+...+ +-|..+ ....+.++-++--+||.+.+-|..+.
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg 115 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATG 115 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCC
Confidence 45667789999999999999998885332 222211 14567789999999999999996654
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=21.35 E-value=8.6e+02 Score=24.59 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=69.7
Q ss_pred CcccceEEEEEc---C----CCCEEEEeeCCCeEEEEECCCCc---------------eEEEEecc---cCCeEEEEEcc
Q 022074 37 GYSFGIFSLKFS---T----DGRELVAGSSDDCIYVYDLEANK---------------LSLRILAH---TSDVNTVCFGD 91 (303)
Q Consensus 37 ~~~~~v~~l~~s---~----~g~~l~sgs~Dg~v~lwd~~~~~---------------~~~~~~~h---~~~v~~l~~~~ 91 (303)
....||..|.|. . ..++|++= ....+.|+...-.+ ....+..+ ......++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 566899999999 2 12355554 44567788722111 11222211 12456889998
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCC-cccee---eccc-------ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGV---LMGH-------LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~-~~~~~---~~~h-------~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.+...||.....|...+||+....... ..... ..|+ .+....+.|..+-+.|+.+++ ..+.++|++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 777899999999999999982111111 01111 1111 122334556666666776665 66777777653
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.34 E-value=3.8e+02 Score=27.58 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=38.3
Q ss_pred CCCeEEEEECCCCeEEEE-eecCCCCeEEEEECCCCCeEEE-EeCCC-----CEEEeecCCC
Q 022074 230 HDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVS-SSWDG-----DVVRWEFPGN 284 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp~~~~las-~s~Dg-----~i~~Wd~~~~ 284 (303)
..+.|.+-|......... + .+..+|.+=+|||||+.||= .+.++ .|.+=++...
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~-~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEI-EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CCCeEEEEecCCCCceEEEe-cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 345888889876554322 3 46789999999999999887 56555 4666676544
No 492
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=21.31 E-value=1.3e+02 Score=17.63 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=12.8
Q ss_pred CCeEEEEEeCCC------eEEEEECCCCe
Q 022074 221 GQKYIYTGSHDS------CVYVYDLVSGE 243 (303)
Q Consensus 221 ~~~~latg~~dg------~i~iwd~~~~~ 243 (303)
++++++.||.+. .+.+||+.+++
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 456666666433 47788887764
Done!