Query 022075
Match_columns 303
No_of_seqs 242 out of 1650
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 3E-13 6.5E-18 92.3 2.4 44 33-76 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.1 2.9E-11 6.2E-16 115.7 3.3 48 33-80 230-278 (348)
3 PHA02929 N1R/p28-like protein; 99.1 9E-11 2E-15 107.5 4.7 53 28-80 170-227 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.7E-10 3.7E-15 87.4 4.1 45 32-76 19-73 (73)
5 PLN03208 E3 ubiquitin-protein 99.0 1.3E-10 2.8E-15 103.0 3.8 54 28-84 14-83 (193)
6 KOG0317 Predicted E3 ubiquitin 99.0 1.1E-10 2.3E-15 108.3 3.3 52 30-84 237-288 (293)
7 KOG0823 Predicted E3 ubiquitin 99.0 1.5E-10 3.3E-15 104.3 3.1 54 29-85 44-100 (230)
8 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.5E-10 5.4E-15 76.0 2.7 39 35-75 1-39 (39)
9 COG5243 HRD1 HRD ubiquitin lig 98.9 4.5E-09 9.7E-14 100.4 10.3 57 23-80 279-345 (491)
10 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.4E-10 1.8E-14 77.3 3.4 47 31-80 1-48 (50)
11 smart00504 Ubox Modified RING 98.9 1.7E-09 3.6E-14 78.5 5.0 58 32-92 1-58 (63)
12 KOG0320 Predicted E3 ubiquitin 98.9 7.6E-10 1.7E-14 96.2 2.2 53 31-84 130-182 (187)
13 cd00162 RING RING-finger (Real 98.9 1.8E-09 3.9E-14 71.9 3.6 44 34-79 1-45 (45)
14 PF15227 zf-C3HC4_4: zinc fing 98.9 1.4E-09 3.1E-14 73.8 2.6 38 35-75 1-42 (42)
15 PF12861 zf-Apc11: Anaphase-pr 98.9 2E-09 4.3E-14 83.5 3.8 52 31-82 20-84 (85)
16 COG5540 RING-finger-containing 98.8 1.9E-09 4.2E-14 100.5 3.3 49 32-80 323-372 (374)
17 TIGR00599 rad18 DNA repair pro 98.8 4.9E-09 1.1E-13 102.5 5.4 60 31-93 25-84 (397)
18 PHA02926 zinc finger-like prot 98.8 3.4E-09 7.4E-14 95.3 2.9 54 27-80 165-230 (242)
19 PF00097 zf-C3HC4: Zinc finger 98.8 4.8E-09 1E-13 70.1 2.9 39 35-75 1-41 (41)
20 PF14634 zf-RING_5: zinc-RING 98.7 1.1E-08 2.3E-13 70.0 3.4 44 34-77 1-44 (44)
21 KOG0287 Postreplication repair 98.7 9.6E-09 2.1E-13 97.2 2.8 61 32-95 23-83 (442)
22 KOG0311 Predicted E3 ubiquitin 98.6 7.7E-08 1.7E-12 91.6 6.3 49 32-82 43-92 (381)
23 PF04564 U-box: U-box domain; 98.5 1.7E-07 3.8E-12 70.8 5.0 63 31-96 3-66 (73)
24 smart00184 RING Ring finger. E 98.5 1.2E-07 2.5E-12 60.8 3.5 38 35-75 1-39 (39)
25 KOG0802 E3 ubiquitin ligase [P 98.5 4.4E-08 9.5E-13 99.9 2.2 51 31-81 290-342 (543)
26 KOG2164 Predicted E3 ubiquitin 98.5 6E-08 1.3E-12 96.2 2.6 52 32-86 186-242 (513)
27 COG5574 PEX10 RING-finger-cont 98.5 7.4E-08 1.6E-12 88.6 2.4 50 32-84 215-266 (271)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 3.2E-07 6.9E-12 62.6 2.8 34 35-69 1-35 (43)
29 PF14835 zf-RING_6: zf-RING of 98.3 2.1E-07 4.5E-12 68.4 1.8 57 32-92 7-63 (65)
30 COG5194 APC11 Component of SCF 98.3 3.8E-07 8.3E-12 69.5 2.5 36 48-83 49-84 (88)
31 KOG2177 Predicted E3 ubiquitin 98.3 3.4E-07 7.4E-12 82.6 2.0 45 30-77 11-55 (386)
32 KOG1493 Anaphase-promoting com 98.2 2.7E-07 5.8E-12 69.8 0.5 51 32-82 20-83 (84)
33 TIGR00570 cdk7 CDK-activating 98.2 9.1E-07 2E-11 83.8 4.0 54 32-85 3-59 (309)
34 COG5432 RAD18 RING-finger-cont 98.2 7.8E-07 1.7E-11 82.9 2.8 51 32-85 25-75 (391)
35 KOG1734 Predicted RING-contain 98.0 1.5E-06 3.2E-11 80.3 -0.2 53 30-82 222-283 (328)
36 PF11793 FANCL_C: FANCL C-term 97.9 1.8E-06 3.9E-11 64.9 -0.4 50 32-81 2-67 (70)
37 KOG2660 Locus-specific chromos 97.8 5.3E-06 1.2E-10 78.6 0.9 49 32-82 15-63 (331)
38 COG5219 Uncharacterized conser 97.8 6E-06 1.3E-10 86.8 0.5 49 32-80 1469-1523(1525)
39 KOG0828 Predicted E3 ubiquitin 97.8 1.3E-05 2.7E-10 79.5 2.3 49 32-80 571-634 (636)
40 KOG1039 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 76.5 3.0 57 26-82 155-223 (344)
41 KOG1785 Tyrosine kinase negati 97.7 0.00025 5.4E-09 69.0 10.8 48 34-84 371-420 (563)
42 smart00744 RINGv The RING-vari 97.7 4E-05 8.6E-10 53.7 3.2 42 34-76 1-49 (49)
43 KOG0824 Predicted E3 ubiquitin 97.6 2.8E-05 6E-10 73.0 2.6 48 32-82 7-55 (324)
44 KOG0978 E3 ubiquitin ligase in 97.6 2.5E-05 5.5E-10 81.0 1.5 51 32-85 643-694 (698)
45 KOG0825 PHD Zn-finger protein 97.5 2.7E-05 5.8E-10 80.7 -0.2 52 32-83 123-174 (1134)
46 KOG4265 Predicted E3 ubiquitin 97.4 0.00011 2.5E-09 70.4 3.2 48 30-80 288-336 (349)
47 KOG2930 SCF ubiquitin ligase, 97.4 8E-05 1.7E-09 59.6 1.8 50 32-81 46-109 (114)
48 KOG0804 Cytoplasmic Zn-finger 97.4 6.6E-05 1.4E-09 73.8 1.5 47 32-80 175-222 (493)
49 KOG4159 Predicted E3 ubiquitin 97.4 0.00012 2.5E-09 72.1 3.0 56 23-81 75-130 (398)
50 KOG4172 Predicted E3 ubiquitin 97.3 5.5E-05 1.2E-09 53.9 0.2 46 32-80 7-54 (62)
51 KOG1645 RING-finger-containing 97.2 0.00027 5.9E-09 68.8 4.0 54 31-84 3-60 (463)
52 KOG4692 Predicted E3 ubiquitin 97.2 0.0002 4.4E-09 68.7 3.0 53 25-80 415-467 (489)
53 PF11789 zf-Nse: Zinc-finger o 97.2 0.00016 3.5E-09 52.2 1.7 41 32-74 11-53 (57)
54 KOG0827 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 69.5 2.5 47 33-79 5-55 (465)
55 KOG0297 TNF receptor-associate 97.2 0.00018 3.9E-09 70.8 1.9 51 31-83 20-70 (391)
56 KOG3970 Predicted E3 ubiquitin 97.1 0.00067 1.4E-08 61.6 5.2 64 30-94 48-119 (299)
57 KOG2879 Predicted E3 ubiquitin 97.1 0.00042 9E-09 64.5 3.3 51 28-80 235-287 (298)
58 KOG4445 Uncharacterized conser 97.0 0.0002 4.4E-09 67.3 0.7 50 32-81 115-187 (368)
59 KOG1428 Inhibitor of type V ad 96.8 0.0011 2.3E-08 72.9 3.9 70 31-100 3485-3569(3738)
60 KOG1813 Predicted E3 ubiquitin 96.8 0.00077 1.7E-08 63.3 2.5 60 33-95 242-301 (313)
61 COG5152 Uncharacterized conser 96.7 0.0012 2.5E-08 59.0 2.6 48 32-82 196-243 (259)
62 KOG1002 Nucleotide excision re 96.3 0.0017 3.8E-08 65.3 1.7 52 28-82 532-588 (791)
63 PF14570 zf-RING_4: RING/Ubox 96.2 0.0041 9E-08 43.4 2.7 45 35-79 1-47 (48)
64 COG5222 Uncharacterized conser 96.1 0.005 1.1E-07 58.1 3.6 50 33-84 275-326 (427)
65 KOG1941 Acetylcholine receptor 96.1 0.0022 4.8E-08 62.4 1.0 51 29-79 362-415 (518)
66 KOG1814 Predicted E3 ubiquitin 96.0 0.0072 1.6E-07 59.2 4.0 45 34-78 186-238 (445)
67 COG5236 Uncharacterized conser 96.0 0.006 1.3E-07 58.7 3.4 54 23-79 52-107 (493)
68 KOG3268 Predicted E3 ubiquitin 95.5 0.0079 1.7E-07 52.9 2.2 51 32-82 165-230 (234)
69 KOG3039 Uncharacterized conser 95.5 0.012 2.7E-07 54.2 3.5 54 32-85 221-275 (303)
70 KOG0826 Predicted E3 ubiquitin 95.4 0.012 2.6E-07 56.2 3.2 55 23-79 291-345 (357)
71 KOG4739 Uncharacterized protei 95.3 0.0059 1.3E-07 56.0 0.7 46 33-81 4-49 (233)
72 COG5175 MOT2 Transcriptional r 95.3 0.011 2.4E-07 56.7 2.5 53 31-83 13-67 (480)
73 PF05883 Baculo_RING: Baculovi 95.3 0.0091 2E-07 50.3 1.7 46 31-76 25-76 (134)
74 KOG1952 Transcription factor N 95.1 0.01 2.2E-07 62.7 1.8 46 32-77 191-244 (950)
75 KOG4185 Predicted E3 ubiquitin 95.1 0.022 4.7E-07 53.6 3.8 48 32-79 3-54 (296)
76 KOG2932 E3 ubiquitin ligase in 95.1 0.12 2.6E-06 49.3 8.6 41 35-79 93-133 (389)
77 KOG1571 Predicted E3 ubiquitin 94.8 0.016 3.6E-07 55.9 2.1 47 28-80 301-347 (355)
78 PHA03096 p28-like protein; Pro 94.5 0.022 4.8E-07 53.9 2.2 45 33-77 179-231 (284)
79 PF04641 Rtf2: Rtf2 RING-finge 94.1 0.043 9.3E-07 51.1 3.3 53 31-84 112-165 (260)
80 KOG0801 Predicted E3 ubiquitin 93.4 0.028 6E-07 48.9 0.5 31 29-59 174-204 (205)
81 PF12906 RINGv: RING-variant d 93.4 0.056 1.2E-06 37.4 1.9 40 35-75 1-47 (47)
82 PF10367 Vps39_2: Vacuolar sor 93.2 0.035 7.5E-07 43.8 0.9 33 30-63 76-108 (109)
83 KOG4275 Predicted E3 ubiquitin 93.2 0.016 3.5E-07 54.6 -1.2 42 32-80 300-342 (350)
84 KOG1940 Zn-finger protein [Gen 92.9 0.066 1.4E-06 50.4 2.4 52 28-80 154-206 (276)
85 PF03854 zf-P11: P-11 zinc fin 92.9 0.04 8.6E-07 38.3 0.6 31 51-81 16-47 (50)
86 PF14447 Prok-RING_4: Prokaryo 92.9 0.06 1.3E-06 38.6 1.6 47 32-83 7-53 (55)
87 PHA02825 LAP/PHD finger-like p 92.8 0.11 2.4E-06 45.0 3.3 46 31-80 7-59 (162)
88 KOG1001 Helicase-like transcri 92.7 0.031 6.7E-07 58.8 -0.2 46 33-82 455-502 (674)
89 KOG0298 DEAD box-containing he 92.4 0.036 7.7E-07 61.1 -0.1 44 33-78 1154-1197(1394)
90 PHA02862 5L protein; Provision 92.4 0.1 2.2E-06 44.6 2.6 47 32-82 2-55 (156)
91 PF08746 zf-RING-like: RING-li 92.1 0.14 3.1E-06 34.7 2.6 39 35-75 1-43 (43)
92 KOG2114 Vacuolar assembly/sort 92.1 0.078 1.7E-06 56.3 1.9 43 32-79 840-882 (933)
93 KOG2817 Predicted E3 ubiquitin 90.6 0.22 4.8E-06 48.8 3.1 46 34-79 336-384 (394)
94 COG5220 TFB3 Cdk activating ki 90.5 0.079 1.7E-06 48.8 0.0 52 30-81 8-65 (314)
95 PF10272 Tmpp129: Putative tra 90.3 0.16 3.5E-06 49.5 2.0 32 53-84 311-355 (358)
96 KOG3002 Zn finger protein [Gen 89.2 0.28 6E-06 46.9 2.6 43 31-80 47-91 (299)
97 KOG4367 Predicted Zn-finger pr 89.1 0.25 5.5E-06 49.1 2.3 34 30-66 2-35 (699)
98 PF05290 Baculo_IE-1: Baculovi 87.9 0.39 8.4E-06 40.5 2.3 48 32-81 80-133 (140)
99 PF02891 zf-MIZ: MIZ/SP-RING z 86.3 0.75 1.6E-05 32.2 2.7 43 33-78 3-50 (50)
100 KOG1812 Predicted E3 ubiquitin 85.6 0.29 6.2E-06 48.3 0.5 37 32-68 146-183 (384)
101 KOG4362 Transcriptional regula 85.4 0.23 4.9E-06 52.1 -0.4 46 32-80 21-69 (684)
102 COG5183 SSM4 Protein involved 85.2 0.61 1.3E-05 49.7 2.6 54 29-83 9-69 (1175)
103 KOG3800 Predicted E3 ubiquitin 85.1 1 2.2E-05 42.7 3.7 52 34-85 2-56 (300)
104 PF07800 DUF1644: Protein of u 85.1 0.94 2E-05 39.3 3.3 33 31-66 1-46 (162)
105 KOG3053 Uncharacterized conser 83.9 0.79 1.7E-05 42.7 2.5 57 29-85 17-87 (293)
106 KOG0827 Predicted E3 ubiquitin 83.4 0.12 2.5E-06 50.7 -3.2 51 32-82 196-247 (465)
107 KOG3899 Uncharacterized conser 83.3 0.53 1.1E-05 44.7 1.1 31 53-83 325-368 (381)
108 KOG4718 Non-SMC (structural ma 83.0 0.61 1.3E-05 42.3 1.3 46 32-79 181-226 (235)
109 KOG2034 Vacuolar sorting prote 82.7 0.64 1.4E-05 49.9 1.6 34 32-66 817-850 (911)
110 PF14446 Prok-RING_1: Prokaryo 80.9 1.5 3.3E-05 31.3 2.5 33 32-64 5-38 (54)
111 KOG3161 Predicted E3 ubiquitin 80.4 0.64 1.4E-05 48.3 0.6 40 32-73 11-51 (861)
112 KOG3579 Predicted E3 ubiquitin 79.0 1.2 2.6E-05 42.1 1.9 40 27-69 263-306 (352)
113 KOG2807 RNA polymerase II tran 78.9 1.6 3.5E-05 42.0 2.7 46 32-77 330-375 (378)
114 KOG1815 Predicted E3 ubiquitin 75.5 1.7 3.7E-05 43.6 2.0 38 29-68 67-104 (444)
115 KOG0825 PHD Zn-finger protein 75.4 1.7 3.7E-05 46.3 2.0 50 30-79 94-153 (1134)
116 COG5109 Uncharacterized conser 73.9 2.4 5.2E-05 40.7 2.4 45 33-77 337-384 (396)
117 KOG2068 MOT2 transcription fac 72.9 2.8 6E-05 40.5 2.6 48 33-80 250-298 (327)
118 KOG0309 Conserved WD40 repeat- 71.9 2.5 5.4E-05 45.0 2.1 40 34-74 1030-1069(1081)
119 KOG3039 Uncharacterized conser 70.5 2.9 6.3E-05 38.9 2.1 33 32-67 43-75 (303)
120 KOG0824 Predicted E3 ubiquitin 70.5 1.4 3.1E-05 41.9 0.1 47 32-80 105-151 (324)
121 KOG1609 Protein involved in mR 66.6 3.2 6.8E-05 38.8 1.5 49 32-80 78-134 (323)
122 KOG1100 Predicted E3 ubiquitin 66.3 2.8 6E-05 38.0 1.0 38 35-79 161-199 (207)
123 PF07975 C1_4: TFIIH C1-like d 65.7 2.9 6.3E-05 29.5 0.8 41 35-75 2-49 (51)
124 KOG1812 Predicted E3 ubiquitin 61.4 4.3 9.4E-05 40.1 1.5 43 32-75 306-351 (384)
125 PF07191 zinc-ribbons_6: zinc- 59.5 1.7 3.8E-05 32.7 -1.3 41 32-80 1-41 (70)
126 KOG0802 E3 ubiquitin ligase [P 59.2 4.4 9.6E-05 41.7 1.1 45 32-83 479-523 (543)
127 KOG2066 Vacuolar assembly/sort 58.8 4.4 9.5E-05 43.3 1.0 50 25-75 777-830 (846)
128 KOG2789 Putative Zn-finger pro 57.3 4.3 9.4E-05 40.1 0.6 31 34-65 76-106 (482)
129 PF14569 zf-UDP: Zinc-binding 56.9 13 0.00027 28.7 3.0 50 31-80 8-62 (80)
130 KOG1829 Uncharacterized conser 56.7 4.6 0.0001 41.9 0.8 26 47-75 531-556 (580)
131 KOG3799 Rab3 effector RIM1 and 54.8 3.8 8.3E-05 34.8 -0.2 28 32-66 65-92 (169)
132 KOG2169 Zn-finger transcriptio 53.7 24 0.00052 37.2 5.5 58 34-95 308-371 (636)
133 TIGR00622 ssl1 transcription f 52.9 11 0.00024 31.0 2.2 45 32-76 55-110 (112)
134 COG5627 MMS21 DNA repair prote 52.1 13 0.00029 34.4 2.9 68 32-101 189-260 (275)
135 PF04710 Pellino: Pellino; In 48.5 5.9 0.00013 39.2 0.0 34 45-81 301-340 (416)
136 PF04216 FdhE: Protein involve 47.3 2.3 5E-05 40.1 -3.0 45 32-77 172-219 (290)
137 PLN02189 cellulose synthase 46.5 18 0.00038 40.2 3.2 48 32-80 34-87 (1040)
138 smart00249 PHD PHD zinc finger 46.0 11 0.00024 24.2 1.1 31 34-64 1-31 (47)
139 KOG3005 GIY-YIG type nuclease 44.6 13 0.00028 35.0 1.6 47 33-79 183-242 (276)
140 KOG0269 WD40 repeat-containing 44.3 20 0.00044 38.3 3.1 44 34-78 781-826 (839)
141 PF13901 DUF4206: Domain of un 44.0 15 0.00033 32.9 1.9 39 33-76 153-196 (202)
142 PF06906 DUF1272: Protein of u 43.5 44 0.00096 24.1 3.8 47 34-82 7-54 (57)
143 PF01363 FYVE: FYVE zinc finge 42.9 12 0.00027 27.1 1.0 37 29-65 6-43 (69)
144 PLN02436 cellulose synthase A 42.1 24 0.00052 39.3 3.4 48 32-80 36-89 (1094)
145 PF02318 FYVE_2: FYVE-type zin 41.4 17 0.00037 29.7 1.7 46 31-77 53-102 (118)
146 PF06844 DUF1244: Protein of u 41.4 16 0.00034 27.3 1.3 12 56-67 11-22 (68)
147 PLN02638 cellulose synthase A 40.5 28 0.0006 38.9 3.6 48 32-80 17-70 (1079)
148 KOG3842 Adaptor protein Pellin 39.4 29 0.00063 33.6 3.1 50 31-80 340-414 (429)
149 smart00064 FYVE Protein presen 39.4 25 0.00055 25.3 2.2 36 31-66 9-45 (68)
150 KOG4185 Predicted E3 ubiquitin 37.9 5.6 0.00012 37.3 -1.9 48 31-78 206-265 (296)
151 PF10497 zf-4CXXC_R1: Zinc-fin 37.8 32 0.00069 27.7 2.7 47 32-79 7-71 (105)
152 KOG2231 Predicted E3 ubiquitin 37.2 23 0.00051 37.5 2.3 43 34-79 2-51 (669)
153 PF13240 zinc_ribbon_2: zinc-r 36.4 5.9 0.00013 23.2 -1.3 7 70-76 14-20 (23)
154 PLN02195 cellulose synthase A 36.2 38 0.00083 37.4 3.8 50 31-81 5-60 (977)
155 PF00628 PHD: PHD-finger; Int 35.3 15 0.00033 24.9 0.4 43 34-76 1-49 (51)
156 smart00647 IBR In Between Ring 34.8 8.7 0.00019 27.0 -0.9 32 34-65 20-58 (64)
157 PLN02400 cellulose synthase 33.3 31 0.00067 38.5 2.6 48 32-80 36-89 (1085)
158 KOG1356 Putative transcription 32.6 16 0.00035 39.5 0.3 47 32-79 229-281 (889)
159 TIGR01562 FdhE formate dehydro 32.0 11 0.00025 36.1 -0.8 45 32-77 184-232 (305)
160 PF10146 zf-C4H2: Zinc finger- 31.7 36 0.00079 31.3 2.4 28 57-84 196-223 (230)
161 PRK03564 formate dehydrogenase 29.7 16 0.00035 35.1 -0.3 46 31-77 186-234 (309)
162 KOG1815 Predicted E3 ubiquitin 29.4 15 0.00032 36.9 -0.6 38 32-69 226-268 (444)
163 KOG4451 Uncharacterized conser 29.2 40 0.00086 31.2 2.2 28 56-83 250-277 (286)
164 PF04710 Pellino: Pellino; In 28.5 19 0.00041 35.8 0.0 51 31-81 327-402 (416)
165 PLN02915 cellulose synthase A 28.0 45 0.00099 37.1 2.7 48 32-80 15-68 (1044)
166 smart00132 LIM Zinc-binding do 27.9 44 0.00096 20.5 1.7 36 35-79 2-37 (39)
167 COG3813 Uncharacterized protei 27.9 67 0.0015 24.5 2.8 50 35-86 8-58 (84)
168 KOG2979 Protein involved in DN 26.4 73 0.0016 29.9 3.4 41 32-74 176-218 (262)
169 PLN02248 cellulose synthase-li 26.0 51 0.0011 37.0 2.7 32 52-83 149-180 (1135)
170 KOG4021 Mitochondrial ribosoma 25.8 46 0.001 30.1 1.9 25 70-94 109-133 (239)
171 cd00065 FYVE FYVE domain; Zinc 25.1 49 0.0011 22.7 1.6 34 33-66 3-37 (57)
172 KOG4218 Nuclear hormone recept 24.2 65 0.0014 31.7 2.7 15 28-42 11-25 (475)
173 PF01485 IBR: IBR domain; Int 22.7 11 0.00023 26.4 -2.2 33 33-65 19-58 (64)
174 PF13832 zf-HC5HC2H_2: PHD-zin 22.4 63 0.0014 25.5 2.0 33 31-65 54-88 (110)
175 COG2824 PhnA Uncharacterized Z 22.3 31 0.00066 28.2 0.1 10 34-43 5-14 (112)
176 COG4847 Uncharacterized protei 21.7 65 0.0014 25.8 1.8 33 32-65 6-38 (103)
177 KOG0956 PHD finger protein AF1 21.6 36 0.00079 36.2 0.5 52 28-79 113-181 (900)
178 PTZ00303 phosphatidylinositol 21.5 50 0.0011 35.8 1.5 34 33-66 461-500 (1374)
179 KOG3113 Uncharacterized conser 21.4 86 0.0019 29.5 2.8 49 34-84 113-162 (293)
180 COG3492 Uncharacterized protei 21.3 49 0.0011 26.3 1.1 13 56-68 42-54 (104)
181 PF13771 zf-HC5HC2H: PHD-like 21.0 30 0.00064 26.2 -0.2 36 27-64 31-68 (90)
182 TIGR03774 RPE2 Rickettsial pal 20.3 36 0.00077 22.0 0.1 12 279-290 2-13 (35)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.36 E-value=3e-13 Score=92.31 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.3
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR 76 (303)
++|+||++.|...+.++.++|+|.||..||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999998777888889999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.9e-11 Score=115.67 Aligned_cols=48 Identities=35% Similarity=1.019 Sum_probs=43.8
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPIS 80 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~ 80 (303)
++|.||+|+|..++.+++|+|+|.||..||+.|+... ..||+||..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 5899999999999999999999999999999999765 56999999764
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.08 E-value=9e-11 Score=107.54 Aligned_cols=53 Identities=28% Similarity=0.830 Sum_probs=43.1
Q ss_pred CCCCccccccccccccCCCC-----eeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 28 QDSCDDACSICLEEFSESDP-----STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~-----~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+.+.+.+|+||++.+.+... ..+++|+|.||..||..|+..+.+||+||..+.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 34557899999999743221 245689999999999999999999999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.04 E-value=1.7e-10 Score=87.42 Aligned_cols=45 Identities=36% Similarity=1.006 Sum_probs=36.1
Q ss_pred ccccccccccccC----------CCCeeeccCCccccHHhHHHHHhcCCCCCCCc
Q 022075 32 DDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (303)
Q Consensus 32 d~~C~ICle~f~~----------~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR 76 (303)
++.|.||++.|.+ .-++.+..|+|.||..||..|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999999931 23345678999999999999999999999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.3e-10 Score=102.96 Aligned_cols=54 Identities=33% Similarity=0.784 Sum_probs=42.5
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc----------------CCCCCCCcccCcCCCc
Q 022075 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDA 84 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~----------------~~~CP~CR~~l~~~d~ 84 (303)
+...+.+|+||++.+ .++ +++.|+|.||+.||..|+.. ...||+||..+....+
T Consensus 14 ~~~~~~~CpICld~~--~dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 14 DSGGDFDCNICLDQV--RDP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred cCCCccCCccCCCcC--CCc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 344578899999998 444 55799999999999999842 2479999999975543
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=108.27 Aligned_cols=52 Identities=33% Similarity=0.901 Sum_probs=44.2
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
+.+..|.|||+.. ..+..++|||.|||.||.+|+..+..||+||..+...++
T Consensus 237 ~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 3467799999996 345778999999999999999999999999999876543
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.5e-10 Score=104.32 Aligned_cols=54 Identities=35% Similarity=0.751 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcccCcCCCcc
Q 022075 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLKDAT 85 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~~l~~~d~~ 85 (303)
+...-+|.||||.- .+ ++++.|||.|||.||++|++. ++.||+||..+..+...
T Consensus 44 ~~~~FdCNICLd~a--kd-PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA--KD-PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeecccc--CC-CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 44466899999996 34 566789999999999999975 45799999988766544
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.99 E-value=2.5e-10 Score=75.96 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.9
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
|+||++.+ .+++++++|||.||..||.+|++....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999 5666789999999999999999998899998
No 9
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.5e-09 Score=100.39 Aligned_cols=57 Identities=30% Similarity=0.846 Sum_probs=44.5
Q ss_pred hhcCCCCCCccccccccccc-cCC---------CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 23 VEGGIQDSCDDACSICLEEF-SES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 23 ~~~~~~~~~d~~C~ICle~f-~~~---------~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
.+.++ ...|..|.||+|++ ..+ ..++.++|||.||.+|+.-|++++++||+||.++.
T Consensus 279 t~eql-~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 279 TEEQL-TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhhh-cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 33333 44588999999994 322 12356799999999999999999999999999853
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.92 E-value=8.4e-10 Score=77.26 Aligned_cols=47 Identities=34% Similarity=0.798 Sum_probs=39.3
Q ss_pred CccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCc
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
++..|.||++.+ ..+.+++|+|. ||..|+..|++....||+||+++.
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 367899999997 33677799999 999999999999999999999875
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.92 E-value=1.7e-09 Score=78.54 Aligned_cols=58 Identities=21% Similarity=0.430 Sum_probs=47.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~ 92 (303)
+..|+||++.+ .+| .+++|||.||..||.+|++.+..||+|+..+...++..+..+..
T Consensus 1 ~~~Cpi~~~~~--~~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVM--KDP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcC--CCC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence 35799999999 555 45699999999999999988889999999997777666544443
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-10 Score=96.22 Aligned_cols=53 Identities=34% Similarity=0.709 Sum_probs=43.6
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
.--.|+|||+.+....+ .-++|||.||..||...++....||+|++.|..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 34569999999943222 447999999999999999999999999998876654
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=1.8e-09 Score=71.87 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=38.2
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccC
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l 79 (303)
+|+||++.+ .++..+++|+|.||..|+..|+.. ...||.|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 566777779999999999999987 77899998764
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.86 E-value=1.4e-09 Score=73.79 Aligned_cols=38 Identities=37% Similarity=0.947 Sum_probs=28.7
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHhcC----CCCCCC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----~~CP~C 75 (303)
|+||++.| .+|++ ++|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~--~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 56655 5999999999999999653 369987
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=2e-09 Score=83.51 Aligned_cols=52 Identities=42% Similarity=1.013 Sum_probs=41.3
Q ss_pred Ccccccccccccc----------CCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcccCcCC
Q 022075 31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (303)
Q Consensus 31 ~d~~C~ICle~f~----------~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~~l~~~ 82 (303)
.|+.|.||...|. +.-++..-.|+|.||..||++|+.. +..||+||+++..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 3788999999885 1224555689999999999999975 46899999988644
No 16
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.9e-09 Score=100.50 Aligned_cols=49 Identities=37% Similarity=0.911 Sum_probs=44.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~CR~~l~ 80 (303)
..+|.||++.|...+.+++++|.|.||..|+.+|+. .+..||+||..+.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 467999999997777889999999999999999998 5789999999875
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=4.9e-09 Score=102.54 Aligned_cols=60 Identities=27% Similarity=0.560 Sum_probs=48.8
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHH
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~ 93 (303)
....|+||++.| ..++ +++|+|.||..||..|+.....||+|+..+....+..+..+..+
T Consensus 25 ~~l~C~IC~d~~--~~Pv-itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 25 TSLRCHICKDFF--DVPV-LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred cccCCCcCchhh--hCcc-CCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 378999999999 5554 67999999999999999888899999999876666555544443
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.77 E-value=3.4e-09 Score=95.34 Aligned_cols=54 Identities=26% Similarity=0.644 Sum_probs=41.7
Q ss_pred CCCCCccccccccccccCC------CCeeeccCCccccHHhHHHHHhcC------CCCCCCcccCc
Q 022075 27 IQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPIS 80 (303)
Q Consensus 27 ~~~~~d~~C~ICle~f~~~------~~~~vl~C~H~Fc~~CI~~Wl~~~------~~CP~CR~~l~ 80 (303)
.+.+.+.+|+||+|.+... ....+.+|+|.||..||..|...+ ..||+||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3556689999999986322 123567999999999999999753 45999999875
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.77 E-value=4.8e-09 Score=70.09 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=34.1
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHh--cCCCCCCC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~--~~~~CP~C 75 (303)
|+||++.+ .++..+++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998 56666889999999999999998 45679988
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=1.1e-08 Score=69.95 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.7
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
.|+||++.|.+..+..+++|+|.||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965667889999999999999999866778999985
No 21
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.67 E-value=9.6e-09 Score=97.16 Aligned_cols=61 Identities=28% Similarity=0.670 Sum_probs=51.7
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~ 95 (303)
-+.|.||.|+| ..+ .+++|+|.||..||..+|..+..||.|+.++.+.++..+.+++.+.+
T Consensus 23 lLRC~IC~eyf--~ip-~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 23 LLRCGICFEYF--NIP-MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred HHHHhHHHHHh--cCc-eeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence 56799999999 444 55689999999999999999999999999999888887766655443
No 22
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.7e-08 Score=91.58 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~ 82 (303)
++.|+|||+.+ ...++...|.|.||.+||..-+.. .+.||.||+.+..+
T Consensus 43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 77899999999 666788899999999999888865 67999999988544
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.50 E-value=1.7e-07 Score=70.78 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=46.9
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCCcchHHHHHHHHHH
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQE 96 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d~~~~~l~e~~~~e 96 (303)
++..|+||.+.| .+|+. ++|||.|+..||..|+.. ...||+|+..+...++.++..+.....+
T Consensus 3 ~~f~CpIt~~lM--~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~ 66 (73)
T PF04564_consen 3 DEFLCPITGELM--RDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEE 66 (73)
T ss_dssp GGGB-TTTSSB---SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHH
T ss_pred cccCCcCcCcHh--hCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHH
Confidence 367899999999 56554 589999999999999988 7899999999998888887666554443
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=1.2e-07 Score=60.80 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=32.4
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~C 75 (303)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999984 4466679999999999999998 56679987
No 25
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.4e-08 Score=99.89 Aligned_cols=51 Identities=33% Similarity=0.785 Sum_probs=42.7
Q ss_pred CccccccccccccCCCC--eeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022075 31 CDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~--~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
.++.|.||+|.+..... ++.++|+|.||..|+..|++++.+||+||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 37889999999943322 5667999999999999999999999999995543
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6e-08 Score=96.17 Aligned_cols=52 Identities=40% Similarity=0.769 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-----CCCCCCcccCcCCCcch
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATS 86 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-----~~CP~CR~~l~~~d~~~ 86 (303)
+..|||||+.. .- +..+.|||+||+.||..++... ..||+||..|..+++.+
T Consensus 186 ~~~CPICL~~~--~~-p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPP--SV-PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCC--Cc-ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 77899999997 33 3445799999999999988653 46999999998877654
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.4e-08 Score=88.59 Aligned_cols=50 Identities=36% Similarity=0.824 Sum_probs=41.7
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHH-HHhcCCC-CCCCcccCcCCCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKDA 84 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~-Wl~~~~~-CP~CR~~l~~~d~ 84 (303)
|-.|.||++.. .. +..++|+|.||+.||.. |-.++.. ||+||+.+..++.
T Consensus 215 d~kC~lC~e~~--~~-ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEP--EV-PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeeccc--CC-cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 66799999997 44 45569999999999999 9877765 9999999877653
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.35 E-value=3.2e-07 Score=62.62 Aligned_cols=34 Identities=41% Similarity=0.898 Sum_probs=21.6
Q ss_pred ccccccccc-CCCCeeeccCCccccHHhHHHHHhcC
Q 022075 35 CSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRS 69 (303)
Q Consensus 35 C~ICle~f~-~~~~~~vl~C~H~Fc~~CI~~Wl~~~ 69 (303)
|+||++ |. +..++.+|+|||.||..||.+|+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 63 34567778999999999999999743
No 29
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.33 E-value=2.1e-07 Score=68.40 Aligned_cols=57 Identities=28% Similarity=0.695 Sum_probs=29.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~ 92 (303)
-..|++|.+.| .+|+.+..|.|.||..||...+. ..||+|+.+...+|...+..+..
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDS 63 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhc
Confidence 46799999999 78888889999999999977554 35999999999898877766554
No 30
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.30 E-value=3.8e-07 Score=69.55 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.4
Q ss_pred eeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 48 ~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
+..-.|.|.||.+||.+||..+..||++|+++...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 445679999999999999999999999999986544
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.4e-07 Score=82.60 Aligned_cols=45 Identities=31% Similarity=0.778 Sum_probs=39.1
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
.++..|+||++.| .++ ++++|+|.||..||..|+.....||.||.
T Consensus 11 ~~~~~C~iC~~~~--~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYF--REP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHh--hcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3488999999999 555 77899999999999999885568999995
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.7e-07 Score=69.81 Aligned_cols=51 Identities=39% Similarity=0.931 Sum_probs=39.0
Q ss_pred cccccccccccc----------CCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~----------~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~~l~~~ 82 (303)
+++|.||.-.|. ++-|...-.|.|.||..||++|+.. +..||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 448999988884 2234445579999999999999964 45799999987643
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=9.1e-07 Score=83.80 Aligned_cols=54 Identities=24% Similarity=0.477 Sum_probs=39.4
Q ss_pred ccccccccccccCCCC--eeeccCCccccHHhHHHHH-hcCCCCCCCcccCcCCCcc
Q 022075 32 DDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPISLKDAT 85 (303)
Q Consensus 32 d~~C~ICle~f~~~~~--~~vl~C~H~Fc~~CI~~Wl-~~~~~CP~CR~~l~~~d~~ 85 (303)
+..||||......... ..+..|||.||..|+..++ .....||.|+..+....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 5679999995322222 2333799999999999966 4456899999988776644
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.20 E-value=7.8e-07 Score=82.91 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=43.0
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~ 85 (303)
-+.|-||-+.| .. +..++|+|.||..||..+|..+..||+||....+....
T Consensus 25 ~lrC~IC~~~i--~i-p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 25 MLRCRICDCRI--SI-PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLR 75 (391)
T ss_pred HHHhhhhhhee--ec-ceecccccchhHHHHHHHhcCCCCCccccccHHhhhcc
Confidence 66799999998 44 35579999999999999999999999999987654433
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.5e-06 Score=80.33 Aligned_cols=53 Identities=32% Similarity=0.802 Sum_probs=41.3
Q ss_pred CCccccccccccccCCC-------CeeeccCCccccHHhHHHHHh--cCCCCCCCcccCcCC
Q 022075 30 SCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~-------~~~vl~C~H~Fc~~CI~~Wl~--~~~~CP~CR~~l~~~ 82 (303)
-+|..|.||-..+.... ....+.|+|.||..||..|+. ++++||+|++.+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 34778999998874322 345579999999999999984 467899999887543
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.92 E-value=1.8e-06 Score=64.92 Aligned_cols=50 Identities=40% Similarity=0.893 Sum_probs=24.3
Q ss_pred ccccccccccccCCC--Ceee---ccCCccccHHhHHHHHhc---C--------CCCCCCcccCcC
Q 022075 32 DDACSICLEEFSESD--PSTV---TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~--~~~v---l~C~H~Fc~~CI~~Wl~~---~--------~~CP~CR~~l~~ 81 (303)
+.+|.||+..+.+.. +..+ ..|+..||..||.+|+.. . ..||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999999875222 2222 379999999999999963 1 149999998753
No 37
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.82 E-value=5.3e-06 Score=78.62 Aligned_cols=49 Identities=29% Similarity=0.645 Sum_probs=43.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
-.+|.+|-.+| .+..+++.|.|.||..||.+++...+.||.|...+...
T Consensus 15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 67899999999 67778889999999999999999999999998776443
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.78 E-value=6e-06 Score=86.83 Aligned_cols=49 Identities=31% Similarity=0.935 Sum_probs=38.4
Q ss_pred cccccccccccc--CC-CC-eeeccCCccccHHhHHHHHhc--CCCCCCCcccCc
Q 022075 32 DDACSICLEEFS--ES-DP-STVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~--~~-~~-~~vl~C~H~Fc~~CI~~Wl~~--~~~CP~CR~~l~ 80 (303)
-.+|+||+..+. +. -| -++..|+|.||..|+.+|++. +..||+||..+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 567999998874 11 12 356789999999999999976 468999997764
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.3e-05 Score=79.52 Aligned_cols=49 Identities=33% Similarity=0.861 Sum_probs=38.5
Q ss_pred ccccccccccccCC--------------CCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCc
Q 022075 32 DDACSICLEEFSES--------------DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~--------------~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~ 80 (303)
...|+||+..+.-. ....+++|.|.||..|+..|... +-.||.||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 55699999887311 11345799999999999999985 558999999875
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.7e-05 Score=76.48 Aligned_cols=57 Identities=35% Similarity=0.867 Sum_probs=42.6
Q ss_pred CCCCCCccccccccccccCCC-----CeeeccCCccccHHhHHHHHh--c-----CCCCCCCcccCcCC
Q 022075 26 GIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (303)
Q Consensus 26 ~~~~~~d~~C~ICle~f~~~~-----~~~vl~C~H~Fc~~CI~~Wl~--~-----~~~CP~CR~~l~~~ 82 (303)
..+...+.+|.||++.+.... -..+++|.|.||..||..|-+ + .+.||.||......
T Consensus 155 a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 155 ALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred CcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 345567899999999984322 112367999999999999973 3 36799999877543
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.74 E-value=0.00025 Score=68.96 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=40.7
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc--CCCCCCCcccCcCCCc
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--~~~CP~CR~~l~~~d~ 84 (303)
-|-||-|. .+.+.+-+|||..|..|+..|... ...||.||..|.....
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 49999998 567889999999999999999854 5789999999876543
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.68 E-value=4e-05 Score=53.69 Aligned_cols=42 Identities=29% Similarity=0.769 Sum_probs=31.8
Q ss_pred ccccccccccCCCCeeeccCC-----ccccHHhHHHHHhcC--CCCCCCc
Q 022075 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~-----H~Fc~~CI~~Wl~~~--~~CP~CR 76 (303)
.|-||++... .+...+.+|. |.+|..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998433 3344567886 789999999999654 5899994
No 43
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.8e-05 Score=73.02 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=39.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC-CCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~-~~CP~CR~~l~~~ 82 (303)
+.+|.||+... .- ++.+.|+|.||..||..-++.. ..|++||.+|...
T Consensus 7 ~~eC~IC~nt~--n~-Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG--NC-PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC--Cc-CccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56799999986 33 4667999999999998877664 5699999999654
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.5e-05 Score=80.96 Aligned_cols=51 Identities=27% Similarity=0.652 Sum_probs=42.6
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCCcccCcCCCcc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT 85 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~CR~~l~~~d~~ 85 (303)
-+.|+.|-.-+++ ..++.|+|.||..|+...+. +...||.|...|...|+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 5679999988743 56779999999999999985 567899999999877654
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=2.7e-05 Score=80.73 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=42.9
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
...|+||+..|.+.....-..|.|.||..||..|.....+||+||..|...+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 4469999998865555555789999999999999999999999999885443
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=70.42 Aligned_cols=48 Identities=31% Similarity=0.733 Sum_probs=39.1
Q ss_pred CCccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCc
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+.-.+|.||+... ....+++|.|. .|..|.+..--..+.||+||+++.
T Consensus 288 ~~gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSES---RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCC---cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 3467899999996 44678899996 588998877666788999999884
No 47
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=8e-05 Score=59.64 Aligned_cols=50 Identities=26% Similarity=0.690 Sum_probs=37.7
Q ss_pred cccccccccccc------------CCCC--eeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022075 32 DDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~------------~~~~--~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
-+.|.||.--+- ..+. +..-.|.|.||..||.+|++.+..||+|.+.+..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 456999875431 0111 3336799999999999999999999999887754
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=6.6e-05 Score=73.79 Aligned_cols=47 Identities=34% Similarity=0.846 Sum_probs=35.5
Q ss_pred ccccccccccccCCCC-eeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
--+|+||||.+.+... +..+.|.|.||..|+..|.. .+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 5579999999943322 23458999999999999954 47999987554
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00012 Score=72.14 Aligned_cols=56 Identities=25% Similarity=0.643 Sum_probs=45.4
Q ss_pred hhcCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022075 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 23 ~~~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
..++.+...+.+|.||+..| -.+ ++++|||.||..||.+-+.....||.||..+..
T Consensus 75 ~s~~~~~~sef~c~vc~~~l--~~p-v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRAL--YPP-VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hccCccccchhhhhhhHhhc--CCC-ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33444556688999999998 444 555999999999999988888899999999875
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=5.5e-05 Score=53.91 Aligned_cols=46 Identities=33% Similarity=0.746 Sum_probs=35.7
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHh-cCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQ-RSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~-~~~~CP~CR~~l~ 80 (303)
+++|.||+|-..+ .++..|+|. .|..|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4789999998632 345589996 58899777665 6789999999874
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00027 Score=68.85 Aligned_cols=54 Identities=28% Similarity=0.791 Sum_probs=40.7
Q ss_pred CccccccccccccCC--CCeeeccCCccccHHhHHHHHhc--CCCCCCCcccCcCCCc
Q 022075 31 CDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (303)
Q Consensus 31 ~d~~C~ICle~f~~~--~~~~vl~C~H~Fc~~CI~~Wl~~--~~~CP~CR~~l~~~d~ 84 (303)
+..+|+||++.+... ..+..+.|+|.|..+||.+|+-+ ...||.|..+-.....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence 356899999998533 23556899999999999999953 3579999876544443
No 52
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0002 Score=68.65 Aligned_cols=53 Identities=21% Similarity=0.484 Sum_probs=44.6
Q ss_pred cCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
...-+.+|..|+||+.-- ......+|+|.-|+.||...+...+.|..|+..+.
T Consensus 415 ~~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 445667899999999763 33456799999999999999999999999998875
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.22 E-value=0.00016 Score=52.21 Aligned_cols=41 Identities=37% Similarity=0.829 Sum_probs=30.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc--CCCCCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--~~~CP~ 74 (303)
...|||.+..| .+|++-..|+|.|-...|..|++. ...||.
T Consensus 11 ~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 67899999999 788888899999999999999944 457998
No 54
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00019 Score=69.49 Aligned_cols=47 Identities=26% Similarity=0.772 Sum_probs=33.5
Q ss_pred cccccccccccCCCCeeec-cCCccccHHhHHHHHhcC---CCCCCCcccC
Q 022075 33 DACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRS---SQCPMCWQPI 79 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl-~C~H~Fc~~CI~~Wl~~~---~~CP~CR~~l 79 (303)
..|.||.+.+-....+.-+ .|||.||..|+..|+..- ..||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4699996555322233223 499999999999999863 4799998443
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.15 E-value=0.00018 Score=70.81 Aligned_cols=51 Identities=31% Similarity=0.757 Sum_probs=43.4
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
++..|+||...+ .+++..+.|+|.||..|+..|+..+..||.|+..+....
T Consensus 20 ~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 478999999999 566554699999999999999999999999988775443
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00067 Score=61.58 Aligned_cols=64 Identities=27% Similarity=0.539 Sum_probs=47.4
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHHhc--------CCCCCCCcccCcCCCcchHHHHHHHH
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--------~~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
+++-.|..|--.+..++.+++ .|.|.||+.|+.+|... ..+||.|..+|.........+.+++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLr 119 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALR 119 (299)
T ss_pred CCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHH
Confidence 346679999999877777665 89999999999999754 24699999988765444334444443
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00042 Score=64.50 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=41.8
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc--CCCCCCCcccCc
Q 022075 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--~~~CP~CR~~l~ 80 (303)
....+.+|++|-+.- ..|.+..+|+|.||..||..-+.. +..||.|-....
T Consensus 235 ~~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344588999999996 678888889999999999887654 478999977654
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.01 E-value=0.0002 Score=67.31 Aligned_cols=50 Identities=34% Similarity=0.824 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc-----------------------CCCCCCCcccCcC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-----------------------~~~CP~CR~~l~~ 81 (303)
...|.|||--|-++...+++.|.|.||..|+.++|.. ...||+||..|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3469999999977777899999999999999877531 1259999988743
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.79 E-value=0.0011 Score=72.89 Aligned_cols=70 Identities=34% Similarity=0.655 Sum_probs=48.6
Q ss_pred CccccccccccccCCCCeeeccCCccccHHhHHHHHhcC----------CCCCCCcccCcCC---Ccc--hHHHHHHHHH
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISLK---DAT--SQELLEAVEQ 95 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~----------~~CP~CR~~l~~~---d~~--~~~l~e~~~~ 95 (303)
-|+.|.||+-+-....|...+.|+|.||..|....|++. -.||+|+.+|... |+. ..++++.+..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~edV~~ 3564 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYEDVRR 3564 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 378899999876555677778999999999998777543 2599999988543 322 2344555554
Q ss_pred HHhhh
Q 022075 96 ERSIR 100 (303)
Q Consensus 96 er~~r 100 (303)
....|
T Consensus 3565 KA~MR 3569 (3738)
T KOG1428|consen 3565 KALMR 3569 (3738)
T ss_pred HHhhh
Confidence 44443
No 60
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00077 Score=63.34 Aligned_cols=60 Identities=32% Similarity=0.520 Sum_probs=46.3
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcchHHHHHHHHH
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~~~l~e~~~~ 95 (303)
..|-||..+| ..| +++.|+|.||..|...-++....|++|-+.+........+++..+..
T Consensus 242 f~c~icr~~f--~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~ 301 (313)
T KOG1813|consen 242 FKCFICRKYF--YRP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKL 301 (313)
T ss_pred cccccccccc--ccc-hhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHh
Confidence 3499999999 444 55699999999999999999999999988776555444555444443
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.66 E-value=0.0012 Score=59.03 Aligned_cols=48 Identities=25% Similarity=0.619 Sum_probs=39.4
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
...|.||-++| .. ++++.|+|.||..|...-++....|-+|-+.....
T Consensus 196 PF~C~iCKkdy--~s-pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 196 PFLCGICKKDY--ES-PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred ceeehhchhhc--cc-hhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 45799999999 33 45679999999999998888889999997765433
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.31 E-value=0.0017 Score=65.25 Aligned_cols=52 Identities=23% Similarity=0.682 Sum_probs=40.8
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc-----CCCCCCCcccCcCC
Q 022075 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLK 82 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~-----~~~CP~CR~~l~~~ 82 (303)
++-.+.+|.+|-+.- +......|.|.||..||.++... ..+||.|-..+...
T Consensus 532 enk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 334478899999985 44566799999999999998753 46899998877544
No 63
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.22 E-value=0.0041 Score=43.37 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=22.7
Q ss_pred cccccccccCCCCe-eeccCCccccHHhHHHHHh-cCCCCCCCcccC
Q 022075 35 CSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (303)
Q Consensus 35 C~ICle~f~~~~~~-~vl~C~H~Fc~~CI~~Wl~-~~~~CP~CR~~l 79 (303)
|++|.+.+...+.- .-=+|++.+|..|....+. ....||-||+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999998333222 2236889999999988886 478899999875
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.12 E-value=0.005 Score=58.13 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=39.6
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHh-cCCCCCCC-cccCcCCCc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC-WQPISLKDA 84 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~-~~~~CP~C-R~~l~~~d~ 84 (303)
+.|+.|-..+ .+++....|+|.||..||...|. ..+.||.| |+.+....+
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l 326 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL 326 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhcc
Confidence 7899999998 77777778999999999987764 56789999 444544433
No 65
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=0.0022 Score=62.38 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=39.5
Q ss_pred CCCccccccccccccCCC-CeeeccCCccccHHhHHHHHhcC--CCCCCCcccC
Q 022075 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPI 79 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l 79 (303)
++-++-|..|-+.+...+ ....++|.|+||..|+.+++..+ .+||.||+..
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 334678999999985433 24558999999999999999664 5799999543
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0072 Score=59.24 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=35.4
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcC--------CCCCCCccc
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--------SQCPMCWQP 78 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--------~~CP~CR~~ 78 (303)
.|.||++...-......++|.|.||..|+..++... -.||-|...
T Consensus 186 ~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 186 DCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 599999998554677889999999999999998531 248776543
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.96 E-value=0.006 Score=58.66 Aligned_cols=54 Identities=20% Similarity=0.443 Sum_probs=42.1
Q ss_pred hhcCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHH--HhcCCCCCCCcccC
Q 022075 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPI 79 (303)
Q Consensus 23 ~~~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~W--l~~~~~CP~CR~~l 79 (303)
...+.+|+++..|.||-+.+. -+.++||+|..|.-|..+. |-..+.|++||..+
T Consensus 52 sSaddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 344556777788999999863 3567899999999998654 45678999999876
No 68
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0079 Score=52.94 Aligned_cols=51 Identities=33% Similarity=0.767 Sum_probs=36.0
Q ss_pred ccccccccccccCCCCe--e--eccCCccccHHhHHHHHhc-----C------CCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPS--T--VTSCKHEFHLQCVLEWCQR-----S------SQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~--~--vl~C~H~Fc~~CI~~Wl~~-----~------~~CP~CR~~l~~~ 82 (303)
-..|.||+.+-.++... + -..|+..||.-|+..||.. + ..||+|.+++..|
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 44588888775433221 1 2579999999999999964 1 2599999988644
No 69
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.012 Score=54.16 Aligned_cols=54 Identities=15% Similarity=0.355 Sum_probs=45.1
Q ss_pred ccccccccccccCCCCee-eccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcc
Q 022075 32 DDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~-vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~ 85 (303)
--.|+||.+.+.+..+.. +-+|+|+||..|..++......||+|-+++..+|+.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 446999999997666544 458999999999999999899999999999877643
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.012 Score=56.23 Aligned_cols=55 Identities=18% Similarity=0.518 Sum_probs=42.6
Q ss_pred hhcCCCCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022075 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 23 ~~~~~~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
.++++.......|+||+... .++..+.--|-+||+.||..++...+.||+=-.+.
T Consensus 291 se~e~l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cccccCCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34444555577899999987 55555556799999999999999999999865554
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.0059 Score=55.97 Aligned_cols=46 Identities=28% Similarity=0.672 Sum_probs=34.2
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcC
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
..|.-|...- +.++..++.|.|+||..|...-. ...||+|++.+..
T Consensus 4 VhCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFP-SQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccC-CCCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 3577777654 36778899999999999964322 2389999998743
No 72
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.30 E-value=0.011 Score=56.71 Aligned_cols=53 Identities=21% Similarity=0.504 Sum_probs=37.4
Q ss_pred CccccccccccccCCCCe-eeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCC
Q 022075 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~-~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d 83 (303)
+|+.|+.|+|.+...+.- .--+||...|.-|+...-+. ...||-||..+....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 366699999998433332 22478888888887655443 568999999876554
No 73
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.29 E-value=0.0091 Score=50.32 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=32.4
Q ss_pred CccccccccccccCCCCeeeccCC------ccccHHhHHHHHhcCCCCCCCc
Q 022075 31 CDDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW 76 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~------H~Fc~~CI~~Wl~~~~~CP~CR 76 (303)
...+|.||++.+.+.+-+..+.|+ |.||..|+.+|-.....=|.=|
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 467899999999653345555666 8999999999954444434433
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.13 E-value=0.01 Score=62.71 Aligned_cols=46 Identities=37% Similarity=0.925 Sum_probs=36.0
Q ss_pred ccccccccccccCCCCe-eeccCCccccHHhHHHHHhcC-------CCCCCCcc
Q 022075 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQ 77 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~-~vl~C~H~Fc~~CI~~Wl~~~-------~~CP~CR~ 77 (303)
-.+|.||++.+....++ ....|.|+||..||.+|.... -.||.|..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 56799999999665554 236799999999999998542 25999974
No 75
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.022 Score=53.61 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=38.8
Q ss_pred ccccccccccccCCC---CeeeccCCccccHHhHHHHHhc-CCCCCCCcccC
Q 022075 32 DDACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~---~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l 79 (303)
...|-||-++|...+ -++++.|+|.||..|+...+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 357999999997553 3577899999999999877765 35799999985
No 76
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.12 Score=49.30 Aligned_cols=41 Identities=27% Similarity=0.651 Sum_probs=28.2
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
|.-|--.+ ..--++.+|+|+||++|... ...+.||.|-..+
T Consensus 93 Cd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 93 CDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred ecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 55565444 22345689999999999643 3467899997655
No 77
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.016 Score=55.90 Aligned_cols=47 Identities=32% Similarity=0.659 Sum_probs=33.9
Q ss_pred CCCCccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
++...+.|.||++.+++ ...++|||.-| |..-. +....||+||..+.
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 34456679999999743 55669999877 76443 33455999998774
No 78
>PHA03096 p28-like protein; Provisional
Probab=94.48 E-value=0.022 Score=53.90 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=32.0
Q ss_pred cccccccccccCCC-----CeeeccCCccccHHhHHHHHhcC---CCCCCCcc
Q 022075 33 DACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (303)
Q Consensus 33 ~~C~ICle~f~~~~-----~~~vl~C~H~Fc~~CI~~Wl~~~---~~CP~CR~ 77 (303)
.+|.||++...... -..+..|.|.||..||..|-... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999975321 12446899999999999997542 34555544
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.15 E-value=0.043 Score=51.13 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=40.7
Q ss_pred CccccccccccccCCCCe-eeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022075 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~-~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
..-.|||....|...... .+-+|||+|+..+|.+.- ....||+|-++|...|.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 356799999999443343 345999999999999873 45679999999876654
No 80
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.028 Score=48.87 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.7
Q ss_pred CCCccccccccccccCCCCeeeccCCccccH
Q 022075 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHL 59 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~ 59 (303)
.....+|.||||++..++.+..|+|.++||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 4445689999999998898888999999986
No 81
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.35 E-value=0.056 Score=37.38 Aligned_cols=40 Identities=30% Similarity=0.901 Sum_probs=25.6
Q ss_pred cccccccccCCCCeeeccCCc-----cccHHhHHHHHhc--CCCCCCC
Q 022075 35 CSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQR--SSQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H-----~Fc~~CI~~Wl~~--~~~CP~C 75 (303)
|-||++.-.+.. ..+.+|.. ..|..|+..|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999864433 34457763 6799999999974 4678887
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.25 E-value=0.035 Score=43.82 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=26.4
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHH
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~ 63 (303)
+.+..|++|-..|.. ....+.||+|.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 346779999999954 445667999999999974
No 83
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.016 Score=54.62 Aligned_cols=42 Identities=29% Similarity=0.671 Sum_probs=31.4
Q ss_pred ccccccccccccCCCCeeeccCCcc-ccHHhHHHHHhcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~-Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+.-|.||++.. .+ -..|+|||. -|..|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP--~D-CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP--RD-CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC--cc-eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 56799999996 33 456699995 47788644 348999998764
No 84
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.93 E-value=0.066 Score=50.42 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=41.2
Q ss_pred CCCCccccccccccccCCC-CeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+...+..||||.+.+.... .+.+++|+|..|..|+.+.....-.||+|.+ +.
T Consensus 154 e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~ 206 (276)
T KOG1940|consen 154 ERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PG 206 (276)
T ss_pred hhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hH
Confidence 3334556999999986554 4567899999999999998877789999988 54
No 85
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.90 E-value=0.04 Score=38.32 Aligned_cols=31 Identities=32% Similarity=0.814 Sum_probs=23.0
Q ss_pred ccCC-ccccHHhHHHHHhcCCCCCCCcccCcC
Q 022075 51 TSCK-HEFHLQCVLEWCQRSSQCPMCWQPISL 81 (303)
Q Consensus 51 l~C~-H~Fc~~CI~~Wl~~~~~CP~CR~~l~~ 81 (303)
..|. |..|..|+...+..+..||+|++++..
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3676 999999999999999999999998754
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.90 E-value=0.06 Score=38.59 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=33.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
+..|..|... .....+++|+|..|..|..- .+-+-||.|-.++...+
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 3456667665 33456679999999999543 45678999988886543
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.75 E-value=0.11 Score=44.98 Aligned_cols=46 Identities=30% Similarity=0.757 Sum_probs=34.3
Q ss_pred CccccccccccccCCCCeeeccCCc-----cccHHhHHHHHhcC--CCCCCCcccCc
Q 022075 31 CDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~H-----~Fc~~CI~~Wl~~~--~~CP~CR~~l~ 80 (303)
.+..|-||.+.- +.. ..+|.. ..|..|+.+|+..+ ..|+.|+.++.
T Consensus 7 ~~~~CRIC~~~~--~~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEY--DVV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCC--CCc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 477899999885 221 236665 45999999999654 57999998774
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.67 E-value=0.031 Score=58.80 Aligned_cols=46 Identities=33% Similarity=0.796 Sum_probs=36.9
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcC--CCCCCCcccCcCC
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~ 82 (303)
..|.||++ . +...++.|+|.||..|+...+... ..||.||..+..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 68999999 3 446677999999999999887653 3699999877544
No 89
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.45 E-value=0.036 Score=61.10 Aligned_cols=44 Identities=32% Similarity=0.713 Sum_probs=36.8
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCccc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~ 78 (303)
-.|.||++.+.. --.+..|+|.||..|+..|+..+..||.|+..
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 379999999943 23345799999999999999999999999753
No 90
>PHA02862 5L protein; Provisional
Probab=92.42 E-value=0.1 Score=44.62 Aligned_cols=47 Identities=23% Similarity=0.653 Sum_probs=35.0
Q ss_pred ccccccccccccCCCCeeeccCC-----ccccHHhHHHHHhc--CCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~-----H~Fc~~CI~~Wl~~--~~~CP~CR~~l~~~ 82 (303)
.+.|-||++.- ++. .-+|. ..-|..|+.+|+.. ...|++|+.++..+
T Consensus 2 ~diCWIC~~~~--~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVC--DER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcC--CCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 46799999985 222 24665 47899999999965 45799999988543
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.14 E-value=0.14 Score=34.72 Aligned_cols=39 Identities=26% Similarity=0.750 Sum_probs=22.1
Q ss_pred cccccccccCCCCeeec--cCCccccHHhHHHHHhcCC--CCCCC
Q 022075 35 CSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQRSS--QCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~Wl~~~~--~CP~C 75 (303)
|.+|.+.+. .-..-. .|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~--~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT--QGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-S--SSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHe--eeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888873 334443 5888999999999997654 69987
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=0.078 Score=56.31 Aligned_cols=43 Identities=26% Similarity=0.691 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
...|.+|--.+ +.|.+--.|+|.||.+|+. .....||.|+..+
T Consensus 840 ~skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 35799999998 7777777999999999997 4567899998743
No 93
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.22 Score=48.84 Aligned_cols=46 Identities=20% Similarity=0.454 Sum_probs=38.2
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcC---CCCCCCcccC
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPI 79 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~---~~CP~CR~~l 79 (303)
.|||=.+--.+.+|+..+.|||+.+.+-|.+..+.. ..||+|-...
T Consensus 336 ~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 336 ICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 599988887778888889999999999999988654 4699995443
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.48 E-value=0.079 Score=48.80 Aligned_cols=52 Identities=23% Similarity=0.474 Sum_probs=36.5
Q ss_pred CCccccccccccccCCCCee--e-ccCCccccHHhHHHHHhc-CCCCC--CCcccCcC
Q 022075 30 SCDDACSICLEEFSESDPST--V-TSCKHEFHLQCVLEWCQR-SSQCP--MCWQPISL 81 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~--v-l~C~H~Fc~~CI~~Wl~~-~~~CP--~CR~~l~~ 81 (303)
..|..||||..+..-.-.+. + ..|.|..|-+|+.+.+.. ...|| -|-+.+..
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 34678999997743222222 3 349999999999999876 46899 68665543
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.26 E-value=0.16 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.790 Sum_probs=24.7
Q ss_pred CCccccHHhHHHHHhcC-------------CCCCCCcccCcCCCc
Q 022075 53 CKHEFHLQCVLEWCQRS-------------SQCPMCWQPISLKDA 84 (303)
Q Consensus 53 C~H~Fc~~CI~~Wl~~~-------------~~CP~CR~~l~~~d~ 84 (303)
|...+|..|+-+|+..+ ..||+||+.+...|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 55677999999998532 359999999876653
No 96
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.24 E-value=0.28 Score=46.87 Aligned_cols=43 Identities=30% Similarity=0.651 Sum_probs=33.3
Q ss_pred CccccccccccccCCCCeeeccC--CccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 31 CDDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C--~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+-++||||.+.+ ..|+. .| ||..|..|-. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l--~~Pi~--QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPL--SPPIF--QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccC--cccce--ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 356799999998 44443 56 5999999954 45678999999986
No 97
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=89.12 E-value=0.25 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.541 Sum_probs=27.4
Q ss_pred CCccccccccccccCCCCeeeccCCccccHHhHHHHH
Q 022075 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl 66 (303)
++++.|+||...| .+| .+++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~--~ep-iil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFY--REP-IILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhc--cCc-eEeecccHHHHHHHHhhc
Confidence 3588999999999 555 455999999999987544
No 98
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.90 E-value=0.39 Score=40.51 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=35.1
Q ss_pred ccccccccccccCCCCeee---ccCCccccHHhHHHHHhc---CCCCCCCcccCcC
Q 022075 32 DDACSICLEEFSESDPSTV---TSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL 81 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~v---l~C~H~Fc~~CI~~Wl~~---~~~CP~CR~~l~~ 81 (303)
--+|.||.|...+ .-.+ .-||-..|..|-...++. ...||.|+..+..
T Consensus 80 lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4479999999633 2222 249999999997766554 5789999988754
No 99
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.26 E-value=0.75 Score=32.15 Aligned_cols=43 Identities=21% Similarity=0.544 Sum_probs=23.3
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhc---C--CCCCCCccc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---S--SQCPMCWQP 78 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~---~--~~CP~CR~~ 78 (303)
+.|+|....+ ..|++...|.|.-|++- ..|+.. . -.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999998 77899999999877553 344432 2 369999763
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=0.29 Score=48.31 Aligned_cols=37 Identities=30% Similarity=0.652 Sum_probs=27.1
Q ss_pred cccccccc-ccccCCCCeeeccCCccccHHhHHHHHhc
Q 022075 32 DDACSICL-EEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (303)
Q Consensus 32 d~~C~ICl-e~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~ 68 (303)
..+|.||+ +.....+-..+..|+|.||..|+..++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56799999 44432222235789999999999998864
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.39 E-value=0.23 Score=52.06 Aligned_cols=46 Identities=30% Similarity=0.702 Sum_probs=36.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~~l~ 80 (303)
+.+|+||+..+. .+ ..+.|.|.||..|+..-+.. ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~--~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVK--EP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEee--cc-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 788999999983 44 55699999999998765543 467999986553
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.20 E-value=0.61 Score=49.66 Aligned_cols=54 Identities=31% Similarity=0.705 Sum_probs=40.0
Q ss_pred CCCccccccccccccCCCCeeeccCCc-----cccHHhHHHHHhcC--CCCCCCcccCcCCC
Q 022075 29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H-----~Fc~~CI~~Wl~~~--~~CP~CR~~l~~~d 83 (303)
.+++..|-||..+=..++|..- ||++ ..|.+|+.+|+..+ ..|-+|..++..++
T Consensus 9 N~d~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3456889999988655555444 7774 57999999999764 56999998875543
No 103
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=1 Score=42.70 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=36.5
Q ss_pred ccccccccccCC--CCeeeccCCccccHHhHHHHHhc-CCCCCCCcccCcCCCcc
Q 022075 34 ACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT 85 (303)
Q Consensus 34 ~C~ICle~f~~~--~~~~vl~C~H~Fc~~CI~~Wl~~-~~~CP~CR~~l~~~d~~ 85 (303)
.|++|.-...-. --..+-+|+|..|..|+...+.. ...||.|-..+....+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 588887653211 12334589999999999998865 56899998776554443
No 104
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.06 E-value=0.94 Score=39.34 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=20.6
Q ss_pred CccccccccccccCCCCeeeccCC------------c-cccHHhHHHHH
Q 022075 31 CDDACSICLEEFSESDPSTVTSCK------------H-EFHLQCVLEWC 66 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C~------------H-~Fc~~CI~~Wl 66 (303)
+|..|+||||.. .+ .++|-|. . .-|.-||..+-
T Consensus 1 ed~~CpICme~P--HN-AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHP--HN-AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCC--Cc-eEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 378899999986 33 3333333 1 23467888774
No 105
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=0.79 Score=42.74 Aligned_cols=57 Identities=19% Similarity=0.511 Sum_probs=38.3
Q ss_pred CCCccccccccccccCCCCe-eeccCC-----ccccHHhHHHHHhcC--------CCCCCCcccCcCCCcc
Q 022075 29 DSCDDACSICLEEFSESDPS-TVTSCK-----HEFHLQCVLEWCQRS--------SQCPMCWQPISLKDAT 85 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~-~vl~C~-----H~Fc~~CI~~Wl~~~--------~~CP~CR~~l~~~d~~ 85 (303)
.+.|..|-||+..=++.... -+-||. |..|..|+..|+..+ ..||.|+..+...-+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~ 87 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQ 87 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccc
Confidence 33477899999885332222 234665 788999999998532 2599999877544333
No 106
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.41 E-value=0.12 Score=50.67 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=41.0
Q ss_pred ccccccccccccCC-CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022075 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 32 d~~C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
...|.||.+.++.. +....+.|+|.+|..||..|+.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45699999998533 3344568999999999999999988899999887543
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=0.53 Score=44.67 Aligned_cols=31 Identities=26% Similarity=0.701 Sum_probs=24.3
Q ss_pred CCccccHHhHHHHHhc-------------CCCCCCCcccCcCCC
Q 022075 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKD 83 (303)
Q Consensus 53 C~H~Fc~~CI~~Wl~~-------------~~~CP~CR~~l~~~d 83 (303)
|...+|.+|+-.|+.. +-+||+||+.+...|
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5677889999988743 347999999987655
No 108
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=83.01 E-value=0.61 Score=42.29 Aligned_cols=46 Identities=24% Similarity=0.544 Sum_probs=38.3
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
-..|.+|-... -...+.-.|+-.||..|+.+++++...||.|---|
T Consensus 181 lk~Cn~Ch~Lv--Iqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLV--IQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHh--heeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 45699999987 55567778888999999999999999999995433
No 109
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.72 E-value=0.64 Score=49.88 Aligned_cols=34 Identities=29% Similarity=0.661 Sum_probs=28.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl 66 (303)
.+.|.+|...|. ..+-.+-+|+|.||+.||.+..
T Consensus 817 ~d~C~~C~~~ll-~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLL-IKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhh-cCcceeeeccchHHHHHHHHHH
Confidence 677999999984 4576778999999999998764
No 110
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.91 E-value=1.5 Score=31.32 Aligned_cols=33 Identities=21% Similarity=0.606 Sum_probs=26.3
Q ss_pred ccccccccccccCCCCee-eccCCccccHHhHHH
Q 022075 32 DDACSICLEEFSESDPST-VTSCKHEFHLQCVLE 64 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~-vl~C~H~Fc~~CI~~ 64 (303)
...|.+|-+.|++++.++ ...|+-.||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456999999998666654 478999999999643
No 111
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.40 E-value=0.64 Score=48.33 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=29.2
Q ss_pred ccccccccccccCCC-CeeeccCCccccHHhHHHHHhcCCCCC
Q 022075 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCP 73 (303)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~Wl~~~~~CP 73 (303)
-+.|.||+..|.... .++-+.|+|..|..|+...+.. +||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--SCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--cCC
Confidence 457999987775332 3455699999999999876544 566
No 112
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=1.2 Score=42.15 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=29.7
Q ss_pred CCCCCccccccccccccCCCCeeeccC----CccccHHhHHHHHhcC
Q 022075 27 IQDSCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS 69 (303)
Q Consensus 27 ~~~~~d~~C~ICle~f~~~~~~~vl~C----~H~Fc~~CI~~Wl~~~ 69 (303)
+-....+.|.+|.|.+ .+...+ .| .|+||+-|-.+.++.+
T Consensus 263 ~A~~apLcCTLC~ERL--EDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 263 AAPSAPLCCTLCHERL--EDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred cCCCCceeehhhhhhh--ccCcee-ecCCCcccceecccCHHHHHhh
Confidence 3344468899999999 444444 56 4999999999888754
No 113
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=78.89 E-value=1.6 Score=42.04 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=35.2
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
+..|-.|.+........+...|++.||.+|-.-.-..-..||.|-.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 4459999888766667788899999999995443344567999963
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.46 E-value=1.7 Score=43.57 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=30.4
Q ss_pred CCCccccccccccccCCCCeeeccCCccccHHhHHHHHhc
Q 022075 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~ 68 (303)
+..+..|-||.+.+.. ....+.|+|.||..|+..++..
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 3447889999999833 4556799999999999998864
No 115
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.43 E-value=1.7 Score=46.31 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCccccccccccccCCCC-eee---ccCCccccHHhHHHHHhc------CCCCCCCcccC
Q 022075 30 SCDDACSICLEEFSESDP-STV---TSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (303)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~v---l~C~H~Fc~~CI~~Wl~~------~~~CP~CR~~l 79 (303)
...+.|.||.-.|.+.+. .-. -.|+|.||..||..|..+ .-.|++|..-|
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 335668888887754211 112 249999999999999854 22477776533
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.86 E-value=2.4 Score=40.75 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=35.9
Q ss_pred cccccccccccCCCCeeeccCCccccHHhHHHHHhc---CCCCCCCcc
Q 022075 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~---~~~CP~CR~ 77 (303)
-.||+--+.-.+.+|+..+.|+|+.-..-+....+. ...||+|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 358887777777788888999999999998877654 356999954
No 117
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.86 E-value=2.8 Score=40.47 Aligned_cols=48 Identities=25% Similarity=0.664 Sum_probs=36.8
Q ss_pred cccccccccccCCCCeee-ccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 33 DACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~v-l~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
..|+||.+.....+...+ -+|++..|+.|+..-...+..||.||+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 569999998743332222 368888899999888888999999997664
No 118
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.91 E-value=2.5 Score=44.98 Aligned_cols=40 Identities=28% Similarity=0.742 Sum_probs=29.4
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCC
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~ 74 (303)
.|.||--.+. +-......|+|..|..|..+|+.....||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3555544331 223455789999999999999999989987
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.52 E-value=2.9 Score=38.92 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=27.3
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHh
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~ 67 (303)
-+.|..||..+ .+| .+++=||.||..||++++.
T Consensus 43 FdcCsLtLqPc--~dP-vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPC--RDP-VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccc--cCC-ccCCCCeeeeHHHHHHHHH
Confidence 56799999998 555 4558999999999999864
No 120
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.48 E-value=1.4 Score=41.94 Aligned_cols=47 Identities=30% Similarity=0.688 Sum_probs=39.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
.+.|.||...+ .-+.+.-.|+|.||..|...|.....-||.|+....
T Consensus 105 ~~~~~~~~g~l--~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 105 HDICYICYGKL--TVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ccceeeeeeeE--EecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 66799999998 444455579999999999999999999999988664
No 121
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=66.56 E-value=3.2 Score=38.81 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=34.7
Q ss_pred ccccccccccccCCCC-eeeccCC-----ccccHHhHHHHHh--cCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~-~~vl~C~-----H~Fc~~CI~~Wl~--~~~~CP~CR~~l~ 80 (303)
+..|-||.+....... ....+|. +..|..|+..|+. ....|-.|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4679999997632221 2344665 5679999999997 4567999987653
No 122
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.32 E-value=2.8 Score=37.98 Aligned_cols=38 Identities=26% Similarity=0.610 Sum_probs=28.0
Q ss_pred cccccccccCCCCeeeccCCc-cccHHhHHHHHhcCCCCCCCcccC
Q 022075 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H-~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
|-+|.+. ...+.++||.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChh
Confidence 8889887 45577889996 467777433 45699998754
No 123
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=65.71 E-value=2.9 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.643 Sum_probs=20.5
Q ss_pred cccccccccCC-------CCeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022075 35 CSICLEEFSES-------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 35 C~ICle~f~~~-------~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
|--|+..|... .......|++.||.+|=.-.-+.-..||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCC
Confidence 55566666432 124457899999999943222334579988
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.38 E-value=4.3 Score=40.08 Aligned_cols=43 Identities=26% Similarity=0.562 Sum_probs=31.2
Q ss_pred ccccccccccccCC---CCeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022075 32 DDACSICLEEFSES---DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
-..|++|.-.+.-. ..++.. |+|.||+.|...|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 34588887665211 335665 99999999999998888777665
No 125
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=59.50 E-value=1.7 Score=32.69 Aligned_cols=41 Identities=24% Similarity=0.636 Sum_probs=22.3
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~ 80 (303)
+..||.|...+. ... +|.+|..|-.. +.....||.|.+++.
T Consensus 1 e~~CP~C~~~L~------~~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE------WQG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE------EET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccE------EeC-CEEECcccccc-ceecccCCCcccHHH
Confidence 467999998872 222 77788888654 344567999988773
No 126
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.21 E-value=4.4 Score=41.68 Aligned_cols=45 Identities=31% Similarity=0.880 Sum_probs=36.9
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
.+.|.||++.. ..++++|. |.-|+.+|+..+..||+|++.+...+
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 56799999997 34666788 78899999999999999998776544
No 127
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.82 E-value=4.4 Score=43.28 Aligned_cols=50 Identities=30% Similarity=0.611 Sum_probs=34.8
Q ss_pred cCCCCCCccccccccccccCC----CCeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022075 25 GGIQDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 25 ~~~~~~~d~~C~ICle~f~~~----~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
.+..-..+..|.-|++..... ..+.+..|+|.||..|+.....+.+ |-.|
T Consensus 777 ~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 777 RGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred cCeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 333444466799999987422 3467789999999999977665554 5555
No 128
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=57.31 E-value=4.3 Score=40.14 Aligned_cols=31 Identities=16% Similarity=0.544 Sum_probs=23.5
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHH
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~W 65 (303)
+|+||+-++-.....+ -.|.-..|..|+.++
T Consensus 76 ecpicflyyps~~n~~-rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 76 ECPICFLYYPSAKNLV-RCCSETICGECFAPF 106 (482)
T ss_pred cCceeeeecccccchh-hhhccchhhhheecc
Confidence 7999999984323333 379999999999876
No 129
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=56.90 E-value=13 Score=28.67 Aligned_cols=50 Identities=18% Similarity=0.423 Sum_probs=19.8
Q ss_pred CccccccccccccCCC--Cee--eccCCccccHHhHH-HHHhcCCCCCCCcccCc
Q 022075 31 CDDACSICLEEFSESD--PST--VTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~--~~~--vl~C~H~Fc~~CI~-~Wl~~~~~CP~CR~~l~ 80 (303)
....|.||-+.+.... .+. .-.|.--.|..|.. +.-...+.||.|+..+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3557999999974222 233 35688888999974 33345788999997764
No 130
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=56.75 E-value=4.6 Score=41.92 Aligned_cols=26 Identities=31% Similarity=0.834 Sum_probs=19.4
Q ss_pred CeeeccCCccccHHhHHHHHhcCCCCCCC
Q 022075 47 PSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (303)
Q Consensus 47 ~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~C 75 (303)
..+...|++.||..|+.. .+..||.|
T Consensus 531 ~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred ceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 345678999999999533 34459999
No 131
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.84 E-value=3.8 Score=34.78 Aligned_cols=28 Identities=29% Similarity=0.695 Sum_probs=17.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl 66 (303)
|.+|.||+..-. .-.|+| .|..|-.++.
T Consensus 65 datC~IC~KTKF------ADG~GH-~C~YCq~r~C 92 (169)
T KOG3799|consen 65 DATCGICHKTKF------ADGCGH-NCSYCQTRFC 92 (169)
T ss_pred Ccchhhhhhccc------ccccCc-ccchhhhhHH
Confidence 889999997731 225666 3445544443
No 132
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=53.68 E-value=24 Score=37.21 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=35.4
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhc--C----CCCCCCcccCcCCCcchHHHHHHHHH
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--S----SQCPMCWQPISLKDATSQELLEAVEQ 95 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~--~----~~CP~CR~~l~~~d~~~~~l~e~~~~ 95 (303)
.|+|+.-.+ .-+.+-..|+|.=|++- .|+.. . -.||+|.+.....++.....+..+..
T Consensus 308 ~CPl~~~Rm--~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 308 NCPLSKMRM--SLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred cCCccccee--ecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 488877665 44455555666555544 34321 1 25999999888888776655555443
No 133
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.88 E-value=11 Score=30.96 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=33.6
Q ss_pred ccccccccccccCC-----------CCeeeccCCccccHHhHHHHHhcCCCCCCCc
Q 022075 32 DDACSICLEEFSES-----------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (303)
Q Consensus 32 d~~C~ICle~f~~~-----------~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR 76 (303)
...|--|+..|... .......|++.||.+|=.-|-+.-..||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999988431 1234578999999999777766667899985
No 134
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=52.07 E-value=13 Score=34.37 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=47.0
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcCC--CCCC--CcccCcCCCcchHHHHHHHHHHHhhhc
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPM--CWQPISLKDATSQELLEAVEQERSIRA 101 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~--~CP~--CR~~l~~~d~~~~~l~e~~~~er~~r~ 101 (303)
+..|+|-+..+ .-|+.-..|.|.|=.+-|...++... .||. |-+.+...++.-...++.-+.....+.
T Consensus 189 ~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 189 SNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRN 260 (275)
T ss_pred cccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHh
Confidence 66799976665 34555578999999999999998654 5775 766666666655556665555555543
No 135
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.49 E-value=5.9 Score=39.24 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=0.0
Q ss_pred CCCeeeccCCccccHHhHHHHHhc------CCCCCCCcccCcC
Q 022075 45 SDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISL 81 (303)
Q Consensus 45 ~~~~~vl~C~H~Fc~~CI~~Wl~~------~~~CP~CR~~l~~ 81 (303)
.+|...+.|+|++.++ .|-.. ...||+||..-..
T Consensus 301 ~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 301 RQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------
T ss_pred cCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 4566778999988764 56532 4579999986543
No 136
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.34 E-value=2.3 Score=40.11 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCeeec---cCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 32 DDACSICLEEFSESDPSTVT---SCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl---~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
...||||-..-.-.. +... .-.|.+|..|-.+|--....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 468999987642110 0111 13688999999999888889999954
No 137
>PLN02189 cellulose synthase
Probab=46.55 E-value=18 Score=40.17 Aligned_cols=48 Identities=21% Similarity=0.521 Sum_probs=33.7
Q ss_pred ccccccccccccCCC--Ce--eeccCCccccHHhHHHHH--hcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSESD--PS--TVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~~--~~--~vl~C~H~Fc~~CI~~Wl--~~~~~CP~CR~~l~ 80 (303)
...|.||-|.+.... .+ .+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 457999999974221 22 33457778999998 443 34678999998875
No 138
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=44.58 E-value=13 Score=35.04 Aligned_cols=47 Identities=30% Similarity=0.559 Sum_probs=32.7
Q ss_pred cccccccccccCCCCeee----ccCCccccHHhHHHHHh-c--------CCCCCCCcccC
Q 022075 33 DACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQ-R--------SSQCPMCWQPI 79 (303)
Q Consensus 33 ~~C~ICle~f~~~~~~~v----l~C~H~Fc~~CI~~Wl~-~--------~~~CP~CR~~l 79 (303)
.+|-||.+.+...+..+. ..|.-.+|..|+-..+. . ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 579999999843333332 45888899999988432 2 23699998854
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.27 E-value=20 Score=38.33 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCC--Cccc
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM--CWQP 78 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~--CR~~ 78 (303)
.|.+|-..+. +..+...-|+|.-|.+|+..|+....-||. |-..
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 4888887763 223444679999999999999999887776 6443
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=43.95 E-value=15 Score=32.92 Aligned_cols=39 Identities=31% Similarity=0.726 Sum_probs=26.3
Q ss_pred ccccccccc-----ccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCc
Q 022075 33 DACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (303)
Q Consensus 33 ~~C~ICle~-----f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR 76 (303)
..|-||-.. |......+...|+..||..|.. ...||.|.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 457778742 2112334567899999999965 26799994
No 142
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=43.49 E-value=44 Score=24.14 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=30.9
Q ss_pred ccccccccccCCC-CeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCC
Q 022075 34 ACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (303)
Q Consensus 34 ~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~ 82 (303)
.|-.|-.++.... ...+-.=...||..|....| ...||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3666777764433 23331223679999998876 67899998877543
No 143
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.91 E-value=12 Score=27.07 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=19.0
Q ss_pred CCCccccccccccccCCC-CeeeccCCccccHHhHHHH
Q 022075 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 29 ~~~d~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~W 65 (303)
+.+...|.+|...|.--. ....-.||+.||..|....
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 344678999999995322 2445689999999987543
No 144
>PLN02436 cellulose synthase A
Probab=42.07 E-value=24 Score=39.31 Aligned_cols=48 Identities=23% Similarity=0.621 Sum_probs=33.6
Q ss_pred ccccccccccccCC---CC-eeeccCCccccHHhHHHHH--hcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~-~~vl~C~H~Fc~~CI~~Wl--~~~~~CP~CR~~l~ 80 (303)
...|.||-|++... ++ +.+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 44799999997422 22 233457778999998 443 34678999998875
No 145
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.36 E-value=17 Score=29.67 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=28.3
Q ss_pred CccccccccccccCC--CCeeeccCCccccHHhHHHHHhcCC--CCCCCcc
Q 022075 31 CDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (303)
Q Consensus 31 ~d~~C~ICle~f~~~--~~~~vl~C~H~Fc~~CI~~Wl~~~~--~CP~CR~ 77 (303)
.+..|.+|...|.-- .......|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 477899999876422 3356688999999999543 11111 3766654
No 146
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=41.36 E-value=16 Score=27.29 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.8
Q ss_pred cccHHhHHHHHh
Q 022075 56 EFHLQCVLEWCQ 67 (303)
Q Consensus 56 ~Fc~~CI~~Wl~ 67 (303)
-||.-||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 147
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=40.53 E-value=28 Score=38.86 Aligned_cols=48 Identities=21% Similarity=0.609 Sum_probs=33.9
Q ss_pred ccccccccccccCC---CC-eeeccCCccccHHhHHHHH--hcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~-~~vl~C~H~Fc~~CI~~Wl--~~~~~CP~CR~~l~ 80 (303)
...|.||-|++... ++ +.+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 34699999997422 22 334567778999998 443 34678999998774
No 148
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.45 E-value=29 Score=33.60 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=33.1
Q ss_pred Ccccccccccccc--------------CCCC--eeeccCCccccHHhHHHHHhc---------CCCCCCCcccCc
Q 022075 31 CDDACSICLEEFS--------------ESDP--STVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPIS 80 (303)
Q Consensus 31 ~d~~C~ICle~f~--------------~~~~--~~vl~C~H~Fc~~CI~~Wl~~---------~~~CP~CR~~l~ 80 (303)
.+.+|++|+..-. +.-+ ....+|+|..-..-..-|.+- +..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3678999987521 1111 133689997777777788653 346999977664
No 149
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=5.6 Score=37.26 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=36.4
Q ss_pred CccccccccccccCC---CCeeecc--------CCccccHHhHHHHHhcC-CCCCCCccc
Q 022075 31 CDDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQRS-SQCPMCWQP 78 (303)
Q Consensus 31 ~d~~C~ICle~f~~~---~~~~vl~--------C~H~Fc~~CI~~Wl~~~-~~CP~CR~~ 78 (303)
.+..|.||...+... ....++. |+|..|..|+..-+... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 356799999998621 2245556 99999999999887554 589999874
No 151
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.79 E-value=32 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCeee------ccC---CccccHHhHHHHHhcC---------CCCCCCcccC
Q 022075 32 DDACSICLEEFSESDPSTV------TSC---KHEFHLQCVLEWCQRS---------SQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~v------l~C---~H~Fc~~CI~~Wl~~~---------~~CP~CR~~l 79 (303)
...|..|...-.+ ..+.. ..| .-.||..||..++... -.||.||..-
T Consensus 7 g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 7 GKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 4567777764311 11122 455 7789999998887432 3599998743
No 152
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.18 E-value=23 Score=37.46 Aligned_cols=43 Identities=30% Similarity=0.640 Sum_probs=31.9
Q ss_pred ccccccccccCCCCeeeccCCc-cccHHhHHHHHh--c----CCCCCCCcccC
Q 022075 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H-~Fc~~CI~~Wl~--~----~~~CP~CR~~l 79 (303)
.|.||-..+ .. +..-.|+| ..|..|...... . ...||+||..+
T Consensus 2 ~c~ic~~s~--~~-~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP--DF-VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc--cc-cccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 499999886 33 34458999 999999877642 2 45689999855
No 153
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=36.42 E-value=5.9 Score=23.21 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=3.1
Q ss_pred CCCCCCc
Q 022075 70 SQCPMCW 76 (303)
Q Consensus 70 ~~CP~CR 76 (303)
+.||.|-
T Consensus 14 ~fC~~CG 20 (23)
T PF13240_consen 14 KFCPNCG 20 (23)
T ss_pred cchhhhC
Confidence 3444443
No 154
>PLN02195 cellulose synthase A
Probab=36.18 E-value=38 Score=37.41 Aligned_cols=50 Identities=20% Similarity=0.435 Sum_probs=35.4
Q ss_pred CccccccccccccCC---CC-eeeccCCccccHHhHHHHHh--cCCCCCCCcccCcC
Q 022075 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISL 81 (303)
Q Consensus 31 ~d~~C~ICle~f~~~---~~-~~vl~C~H~Fc~~CI~~Wl~--~~~~CP~CR~~l~~ 81 (303)
....|.||-+.+... ++ +.+-.|+--.|..|. ++-. .++.||.|+..+.+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 345799999987422 22 334578888999998 5443 36789999998873
No 155
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.32 E-value=15 Score=24.85 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=26.1
Q ss_pred ccccccccccCCCCeeeccCCccccHHhHHHHHh------cCCCCCCCc
Q 022075 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCW 76 (303)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~------~~~~CP~CR 76 (303)
.|.||......+.-+.--.|...||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3788888442222234467999999999753321 134577664
No 156
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.79 E-value=8.7 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=20.3
Q ss_pred ccc--cccccccCC----C-CeeeccCCccccHHhHHHH
Q 022075 34 ACS--ICLEEFSES----D-PSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 34 ~C~--ICle~f~~~----~-~~~vl~C~H~Fc~~CI~~W 65 (303)
-|+ =|...+... . .+....|++.||+.|...|
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 477 564444322 2 2333478999999998887
No 157
>PLN02400 cellulose synthase
Probab=33.35 E-value=31 Score=38.52 Aligned_cols=48 Identities=21% Similarity=0.537 Sum_probs=33.6
Q ss_pred ccccccccccccCC---CC-eeeccCCccccHHhHHHHH--hcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~-~~vl~C~H~Fc~~CI~~Wl--~~~~~CP~CR~~l~ 80 (303)
...|.||-|++... ++ +.+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchh-heecccCCccCcccCCccc
Confidence 44799999997422 22 234567777999997 443 34678999998774
No 158
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=32.62 E-value=16 Score=39.45 Aligned_cols=47 Identities=19% Similarity=0.558 Sum_probs=33.0
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhc------CCCCCCCcccC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~------~~~CP~CR~~l 79 (303)
...|..|...+.. .--+...|++.||..|+..|.-+ -..|++||...
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 5679999877621 23456789999999999999621 13477776544
No 159
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.04 E-value=11 Score=36.08 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=30.5
Q ss_pred ccccccccccccCCCCeee----ccCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~v----l~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
...||||-..-.-.. ++. -.=.+.+|..|-.+|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 448999987642110 011 122467888999999888899999965
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.70 E-value=36 Score=31.33 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=21.3
Q ss_pred ccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022075 57 FHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 57 Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
-|..|....-..-..||+|+.....+++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 5888887766677899999988765543
No 161
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.67 E-value=16 Score=35.14 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=31.6
Q ss_pred CccccccccccccCCCCeee---ccCCccccHHhHHHHHhcCCCCCCCcc
Q 022075 31 CDDACSICLEEFSESDPSTV---TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~v---l~C~H~Fc~~CI~~Wl~~~~~CP~CR~ 77 (303)
....||||-..-.-.- ++. -.=.+.+|..|-.+|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3678999987742110 000 123467889999999988899999964
No 162
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=15 Score=36.90 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=26.1
Q ss_pred ccccccccccccCCC-C--eeec--cCCccccHHhHHHHHhcC
Q 022075 32 DDACSICLEEFSESD-P--STVT--SCKHEFHLQCVLEWCQRS 69 (303)
Q Consensus 32 d~~C~ICle~f~~~~-~--~~vl--~C~H~Fc~~CI~~Wl~~~ 69 (303)
...||.|...+.... . +... +|+|.||+.|+..|....
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 445999999884322 1 1222 499999999988887653
No 163
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=29.20 E-value=40 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=21.6
Q ss_pred cccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 56 EFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 56 ~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
..|..|....-..-..||+|+.....++
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 4688888777777789999998775544
No 164
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=28.51 E-value=19 Score=35.76 Aligned_cols=51 Identities=24% Similarity=0.586 Sum_probs=0.0
Q ss_pred Ccccccccccccc--------------CCCCe--eeccCCccccHHhHHHHHhc---------CCCCCCCcccCcC
Q 022075 31 CDDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (303)
Q Consensus 31 ~d~~C~ICle~f~--------------~~~~~--~vl~C~H~Fc~~CI~~Wl~~---------~~~CP~CR~~l~~ 81 (303)
.+.+|+||+..-. +..++ ..-+|||..=.....-|.+- +..||.|-..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 3778999996521 11222 22589998878888888653 2469999887753
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.03 E-value=45 Score=37.11 Aligned_cols=48 Identities=21% Similarity=0.552 Sum_probs=33.8
Q ss_pred ccccccccccccCC---CC-eeeccCCccccHHhHHHHH--hcCCCCCCCcccCc
Q 022075 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (303)
Q Consensus 32 d~~C~ICle~f~~~---~~-~~vl~C~H~Fc~~CI~~Wl--~~~~~CP~CR~~l~ 80 (303)
...|.||-|.+... ++ +.+-.|+--.|..|. ++- ..++.||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 44699999997422 22 234568888999998 443 34678999998774
No 166
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=27.90 E-value=44 Score=20.46 Aligned_cols=36 Identities=19% Similarity=0.627 Sum_probs=20.6
Q ss_pred cccccccccCCCCeeeccCCccccHHhHHHHHhcCCCCCCCcccC
Q 022075 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (303)
Q Consensus 35 C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l 79 (303)
|..|-+.+.... ..+..=+..||..|+ .|..|...|
T Consensus 2 C~~C~~~i~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGE-LVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCc-EEEEeCCccccccCC--------CCcccCCcC
Confidence 777888774331 223233566666663 567776655
No 167
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.86 E-value=67 Score=24.47 Aligned_cols=50 Identities=14% Similarity=0.417 Sum_probs=30.2
Q ss_pred cccccccccCC-CCeeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCcch
Q 022075 35 CSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATS 86 (303)
Q Consensus 35 C~ICle~f~~~-~~~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~~~ 86 (303)
|--|-.++-.+ ....+-.=.|.||..|....| +..||.|-..+......+
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 44455555322 222332234889999986543 568999988887655444
No 168
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.40 E-value=73 Score=29.90 Aligned_cols=41 Identities=15% Similarity=0.411 Sum_probs=32.5
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHHHhcC--CCCCC
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM 74 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~Wl~~~--~~CP~ 74 (303)
+..|||=...+ ..|+.-..|+|.|=.+-|..++... -.||+
T Consensus 176 s~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 45699977676 5677778999999999999998764 35887
No 169
>PLN02248 cellulose synthase-like protein
Probab=25.96 E-value=51 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=27.6
Q ss_pred cCCccccHHhHHHHHhcCCCCCCCcccCcCCC
Q 022075 52 SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (303)
Q Consensus 52 ~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d 83 (303)
.|+...|.+|....++....||-|+.++...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 67889999999999998889999999885543
No 170
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=46 Score=30.08 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=20.1
Q ss_pred CCCCCCcccCcCCCcchHHHHHHHH
Q 022075 70 SQCPMCWQPISLKDATSQELLEAVE 94 (303)
Q Consensus 70 ~~CP~CR~~l~~~d~~~~~l~e~~~ 94 (303)
+-||+||......|.....+++.+.
T Consensus 109 npCPICRDeyL~~DyRN~~LlEQF~ 133 (239)
T KOG4021|consen 109 NPCPICRDEYLYFDYRNPGLLEQFL 133 (239)
T ss_pred CCCCccccceEEEeccCHHHHHHHh
Confidence 4599999998888888777777655
No 171
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.05 E-value=49 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.9
Q ss_pred cccccccccccCCC-CeeeccCCccccHHhHHHHH
Q 022075 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (303)
Q Consensus 33 ~~C~ICle~f~~~~-~~~vl~C~H~Fc~~CI~~Wl 66 (303)
..|.+|-..|.... ......|++.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46899988774322 23456899999999976543
No 172
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.24 E-value=65 Score=31.67 Aligned_cols=15 Identities=13% Similarity=0.674 Sum_probs=11.3
Q ss_pred CCCCccccccccccc
Q 022075 28 QDSCDDACSICLEEF 42 (303)
Q Consensus 28 ~~~~d~~C~ICle~f 42 (303)
.+..+..|++|-+..
T Consensus 11 dedl~ElCPVCGDkV 25 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKV 25 (475)
T ss_pred ccccccccccccCcc
Confidence 444567799999886
No 173
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.68 E-value=11 Score=26.44 Aligned_cols=33 Identities=30% Similarity=0.630 Sum_probs=18.1
Q ss_pred ccccc--ccccccCCC---C--eeeccCCccccHHhHHHH
Q 022075 33 DACSI--CLEEFSESD---P--STVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 33 ~~C~I--Cle~f~~~~---~--~~vl~C~H~Fc~~CI~~W 65 (303)
.-|+- |-..+.... . ++...|++.||+.|...|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 46776 776664221 1 445569999999987776
No 174
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.43 E-value=63 Score=25.49 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=23.9
Q ss_pred CccccccccccccCCCCeeec--cCCccccHHhHHHH
Q 022075 31 CDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEW 65 (303)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl--~C~H~Fc~~CI~~W 65 (303)
....|.||.... +..+... .|...||..|....
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 367899999885 4444443 48889999998653
No 175
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.30 E-value=31 Score=28.17 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=7.1
Q ss_pred cccccccccc
Q 022075 34 ACSICLEEFS 43 (303)
Q Consensus 34 ~C~ICle~f~ 43 (303)
.|++|-.+|.
T Consensus 5 ~cp~c~sEyt 14 (112)
T COG2824 5 PCPKCNSEYT 14 (112)
T ss_pred CCCccCCceE
Confidence 4888877763
No 176
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.70 E-value=65 Score=25.78 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.1
Q ss_pred ccccccccccccCCCCeeeccCCccccHHhHHHH
Q 022075 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (303)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C~H~Fc~~CI~~W 65 (303)
+-.|.||-..+..++.-+.++ .-..|++|+.+=
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHH
Confidence 446999999998888877777 777899998764
No 177
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=21.63 E-value=36 Score=36.20 Aligned_cols=52 Identities=27% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCCCccccccccccccCCCC-----eee--ccCCccccHHhHHHH--H-h-------cCCCCCCCcccC
Q 022075 28 QDSCDDACSICLEEFSESDP-----STV--TSCKHEFHLQCVLEW--C-Q-------RSSQCPMCWQPI 79 (303)
Q Consensus 28 ~~~~d~~C~ICle~f~~~~~-----~~v--l~C~H~Fc~~CI~~W--l-~-------~~~~CP~CR~~l 79 (303)
.|-...+|.||-|.-.+.+. +++ -.|+-.||.-|.... | + .-+.|-+|+..|
T Consensus 113 ~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 113 HDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 45567789999998433221 222 358889999997654 1 1 235799998655
No 178
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.55 E-value=50 Score=35.85 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=25.7
Q ss_pred cccccccccccCC------CCeeeccCCccccHHhHHHHH
Q 022075 33 DACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWC 66 (303)
Q Consensus 33 ~~C~ICle~f~~~------~~~~vl~C~H~Fc~~CI~~Wl 66 (303)
..|.+|...|..- ...++-.||..||..|-..+.
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 5799999999421 234567899999999986553
No 179
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.41 E-value=86 Score=29.54 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=33.8
Q ss_pred ccccccccccCCCC-eeeccCCccccHHhHHHHHhcCCCCCCCcccCcCCCc
Q 022075 34 ACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (303)
Q Consensus 34 ~C~ICle~f~~~~~-~~vl~C~H~Fc~~CI~~Wl~~~~~CP~CR~~l~~~d~ 84 (303)
.|+|---.|...-. ..+-.|||+|-..-+.+. ....|++|-+.+...|.
T Consensus 113 iCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 113 ICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred ecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 58887666622111 233589999988777664 36789999998876654
No 180
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=49 Score=26.30 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.2
Q ss_pred cccHHhHHHHHhc
Q 022075 56 EFHLQCVLEWCQR 68 (303)
Q Consensus 56 ~Fc~~CI~~Wl~~ 68 (303)
-||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999864
No 181
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=20.95 E-value=30 Score=26.24 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCCCCccccccccccccCCCCee--eccCCccccHHhHHH
Q 022075 27 IQDSCDDACSICLEEFSESDPST--VTSCKHEFHLQCVLE 64 (303)
Q Consensus 27 ~~~~~d~~C~ICle~f~~~~~~~--vl~C~H~Fc~~CI~~ 64 (303)
+.......|.+|.... +..+. ...|.-.||..|...
T Consensus 31 ~~~~~~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 31 IKRRRKLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHHhCCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 3344467899999885 33332 257999999999754
No 182
>TIGR03774 RPE2 Rickettsial palindromic element RPE2 domain. This model describes protein translations of a second family, RPE2, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding regions that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=20.30 E-value=36 Score=22.02 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.8
Q ss_pred hhhhcccccccc
Q 022075 279 FNAVSMRYNCKG 290 (303)
Q Consensus 279 ~~~~s~~~k~s~ 290 (303)
.|+|+..|||=.
T Consensus 2 Vns~~~gyKe~g 13 (35)
T TIGR03774 2 VNSVGFGYKERG 13 (35)
T ss_pred cccccccccccC
Confidence 488999999953
Done!