Your job contains 1 sequence.
>022076
MVSKIPNPAEGFYLDPNGMALPGLGPFASSATTPTAAAAAAGTSTVSTSEDPSKKIRKPY
TITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTA
EHLPPPRPKRKAAHPYPQKASKNAPMLSQVSGSFQSSSAQLEPGHFLRPDSSSMLMIPMA
SAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHP
LRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHV
GVF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022076
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2149589 - symbol:AT5G52660 species:3702 "Arabi... 814 4.1e-81 1
TAIR|locus:2124928 - symbol:AT4G01280 species:3702 "Arabi... 604 7.3e-59 1
TAIR|locus:2025411 - symbol:ASG4 "ALTERED SEED GERMINATIO... 368 1.1e-56 2
TAIR|locus:2075049 - symbol:RVE8 "REVEILLE 8" species:370... 571 2.3e-55 1
TAIR|locus:2151251 - symbol:LCL1 "LHY/CCA1-like 1" specie... 559 4.3e-54 1
DICTYBASE|DDB_G0288783 - symbol:mybG "myb domain-containi... 299 5.7e-38 2
TAIR|locus:2044345 - symbol:CCA1 "circadian clock associa... 234 3.0e-21 2
TAIR|locus:2167210 - symbol:RVE1 "REVEILLE 1" species:370... 237 1.1e-19 1
TAIR|locus:2169135 - symbol:RVE2 "REVEILLE 2" species:370... 231 2.5e-19 1
TAIR|locus:504955668 - symbol:AT3G10113 species:3702 "Ara... 224 1.4e-18 1
TAIR|locus:2200970 - symbol:LHY "LATE ELONGATED HYPOCOTYL... 233 1.5e-18 1
TAIR|locus:2014114 - symbol:EPR1 "EARLY-PHYTOCHROME-RESPO... 224 2.8e-18 1
DICTYBASE|DDB_G0277927 - symbol:mybH "SWIRM domain-contai... 160 1.7e-08 2
DICTYBASE|DDB_G0274463 - symbol:mybJ "myb domain-containi... 139 1.5e-06 1
UNIPROTKB|J9P785 - symbol:MYSM1 "Uncharacterized protein"... 130 3.0e-06 2
TAIR|locus:2150149 - symbol:AT5G01200 species:3702 "Arabi... 119 5.2e-05 1
TAIR|locus:2166459 - symbol:AT5G05790 species:3702 "Arabi... 119 5.7e-05 1
TAIR|locus:2011216 - symbol:AT1G19000 species:3702 "Arabi... 119 6.1e-05 1
TAIR|locus:2151621 - symbol:AT5G61620 species:3702 "Arabi... 119 7.7e-05 1
UNIPROTKB|F1NJR7 - symbol:MYSM1 "Histone H2A deubiquitina... 121 7.8e-05 2
UNIPROTKB|F1NCM9 - symbol:MYSM1 "Histone H2A deubiquitina... 121 7.9e-05 2
TAIR|locus:2042872 - symbol:AT2G38090 species:3702 "Arabi... 118 9.0e-05 1
TAIR|locus:2154508 - symbol:AT5G58900 species:3702 "Arabi... 116 0.00014 1
TAIR|locus:2133667 - symbol:AT4G09450 species:3702 "Arabi... 112 0.00015 1
UNIPROTKB|Q5F3F2 - symbol:MYSM1 "Histone H2A deubiquitina... 118 0.00018 2
DICTYBASE|DDB_G0289151 - symbol:mybI "myb domain-containi... 122 0.00018 2
TAIR|locus:2159607 - symbol:AT5G08520 species:3702 "Arabi... 109 0.00021 2
TAIR|locus:2027181 - symbol:AT1G74840 species:3702 "Arabi... 113 0.00026 1
ZFIN|ZDB-GENE-041014-28 - symbol:mysm1 "Myb-like, SWIRM a... 121 0.00031 2
TAIR|locus:2028461 - symbol:AT1G49010 species:3702 "Arabi... 113 0.00038 1
UNIPROTKB|A0JMR6 - symbol:mysm1 "Histone H2A deubiquitina... 118 0.00043 1
TAIR|locus:2074723 - symbol:AT3G11280 species:3702 "Arabi... 110 0.00057 1
UNIPROTKB|Q8S9H7 - symbol:DIVARICATA "Transcription facto... 111 0.00061 1
DICTYBASE|DDB_G0276877 - symbol:mybK "SSXT family protein... 116 0.00080 1
>TAIR|locus:2149589 [details] [associations]
symbol:AT5G52660 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0009723
"response to ethylene stimulus" evidence=IEP] [GO:0009737 "response
to abscisic acid stimulus" evidence=IEP] [GO:0009739 "response to
gibberellin stimulus" evidence=IEP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0009753 "response to
jasmonic acid stimulus" evidence=IEP] [GO:0046686 "response to
cadmium ion" evidence=IEP] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 SMART:SM00717 GO:GO:0009737 EMBL:CP002688
GO:GO:0046686 GO:GO:0009753 GO:GO:0009723 GO:GO:0003677
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237512 eggNOG:NOG279643 EMBL:BT002002 EMBL:AY550303
EMBL:BT025882 IPI:IPI00536078 RefSeq:NP_568776.2 UniGene:At.29606
UniGene:At.67328 ProteinModelPortal:Q8H0W3 SMR:Q8H0W3
EnsemblPlants:AT5G52660.2 GeneID:835343 KEGG:ath:AT5G52660
TAIR:At5g52660 InParanoid:Q8H0W3 OMA:STSEPND PhylomeDB:Q8H0W3
ProtClustDB:CLSN2680521 ArrayExpress:Q8H0W3 Genevestigator:Q8H0W3
Uniprot:Q8H0W3
Length = 331
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 179/310 (57%), Positives = 201/310 (64%)
Query: 1 MVSKIPNPAEGFYLDPNGMALPGLGP-FXXXXXXXXXXXXXXXXXX--------XXXXED 51
MVS+ N ++G++LDP GM +PGLGP F ED
Sbjct: 1 MVSR--N-SDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEED 57
Query: 52 PSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF
Sbjct: 58 LSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 117
Query: 112 LKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRPDS 171
LKVQK+GT EHL QKA KN + +P RP+S
Sbjct: 118 LKVQKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPN--DPSFMFRPES 175
Query: 172 SSMLMI-PMASAATSWTNNVQTVSLSPASKGPEVANNR-SNSTDSTPKARVSGELTDQGG 229
SSMLM P +AA WTNN QT+S +P K ANN S+S+++TP+ R
Sbjct: 176 SSMLMTSPTTAAAAPWTNNAQTISFTPLPKAGAGANNNCSSSSENTPRPR-------SNR 228
Query: 230 ELTDQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSI 289
+ D GN H LRVLPDFAQVY FIGSVFDP AS+H+QKLKKMDPIDVETVLLLMRNLSI
Sbjct: 229 DARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSI 288
Query: 290 NLTSPDFEDH 299
NL+SPDFEDH
Sbjct: 289 NLSSPDFEDH 298
>TAIR|locus:2124928 [details] [associations]
symbol:AT4G01280 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0000303 "response
to superoxide" evidence=RCA] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA] [GO:0009873 "ethylene mediated
signaling pathway" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 SMART:SM00717 GO:GO:0009737 GO:GO:0046686
EMBL:CP002687 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0009651 GO:GO:0003700 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237512 ProtClustDB:CLSN2682863
EMBL:AB493668 IPI:IPI00656826 RefSeq:NP_001031568.1
UniGene:At.44234 ProteinModelPortal:C0SVG5 SMR:C0SVG5
EnsemblPlants:AT4G01280.2 GeneID:827903 KEGG:ath:AT4G01280
TAIR:At4g01280 eggNOG:NOG272389 OMA:KSGANEH PhylomeDB:C0SVG5
Genevestigator:C0SVG5 Uniprot:C0SVG5
Length = 303
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 143/304 (47%), Positives = 177/304 (58%)
Query: 1 MVSKIPNPAEGF-YLDPNGMALPGLGPFXXXXXXXXXXXXXXXXXXXXXXEDPSKKIRKP 59
MVS P P +GF D + M+LP F EDP+ KIRKP
Sbjct: 1 MVSVNPRP-KGFPVFDSSNMSLPSSDGFGSIPATGRTSTVSFS-------EDPTTKIRKP 52
Query: 60 YTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119
YTI KSRE+WT+ EHDKFLEAL LFDRDWKKIEAF+GSKTV+QIRSHAQKYFLKVQK+G
Sbjct: 53 YTIKKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYFLKVQKSGA 112
Query: 120 AEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRPDSSSML--MI 177
EHL KA KN + LEPG+ DS S++
Sbjct: 113 NEHLPPPRPKRKASHPYPIKAPKN---VAYTSLPSSSTLPLLEPGYLYSSDSKSLMGNQA 169
Query: 178 PMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNN 237
AS ++SW N+ T P EV ++T P R E T++ +T N
Sbjct: 170 VCASTSSSW-NHESTNLPKPVI---EVEEPGVSATAPLPNNRCRQEDTERVRAVTKPNNE 225
Query: 238 SH---PLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSINLTSP 294
P RV+P+FA+VY+FIGSVFDPN S H+Q+LK+MDPI++ETVLLLM+NLS+NLTSP
Sbjct: 226 ESCEKPHRVMPNFAEVYSFIGSVFDPNTSGHLQRLKQMDPINMETVLLLMQNLSVNLTSP 285
Query: 295 DFED 298
+F +
Sbjct: 286 EFAE 289
>TAIR|locus:2025411 [details] [associations]
symbol:ASG4 "ALTERED SEED GERMINATION 4" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:Y12776
EMBL:AC061957 GO:GO:0003677 GO:GO:0009651 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AY519508 EMBL:AJ937211 EMBL:BT029347
IPI:IPI00536561 RefSeq:NP_171659.1 UniGene:At.49839
ProteinModelPortal:Q6R0H0 SMR:Q6R0H0 IntAct:Q6R0H0
EnsemblPlants:AT1G01520.1 GeneID:839337 KEGG:ath:AT1G01520
TAIR:At1g01520 eggNOG:KOG0724 HOGENOM:HOG000237512
InParanoid:Q6R0H0 OMA:SHIMEQG PhylomeDB:Q6R0H0
ProtClustDB:CLSN2682863 Genevestigator:Q6R0H0 Uniprot:Q6R0H0
Length = 287
Score = 368 (134.6 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 74/117 (63%), Positives = 82/117 (70%)
Query: 7 NPAEGFYLDPNGMALPGLGPFXXXXXXXXXXXXXXXXXXXXXXEDPSKKIRKPYTITKSR 66
NP++ L P M+LPG EDP+KK+RKPYTITKSR
Sbjct: 5 NPSQAHCL-PMKMSLPGFNTLPHTATTIPVSIRSNRTMSFF--EDPTKKVRKPYTITKSR 61
Query: 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHL 123
E+WTE EHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHAQKYFLKVQKNGT EHL
Sbjct: 62 ENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHL 118
Score = 233 (87.1 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 43/69 (62%), Positives = 57/69 (82%)
Query: 230 ELTDQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSI 289
E DQ + P RV P+FA+VY FIGSVFDP + HV++LK+MDPI++ETVLLLM+NLS+
Sbjct: 208 ETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSV 267
Query: 290 NLTSPDFED 298
NLTSP+F++
Sbjct: 268 NLTSPEFDE 276
>TAIR|locus:2075049 [details] [associations]
symbol:RVE8 "REVEILLE 8" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0032922 "circadian
regulation of gene expression" evidence=IMP] [GO:0043966 "histone
H3 acetylation" evidence=IMP] [GO:0048573 "photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 GO:GO:0046686 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0009651 GO:GO:0003700 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
GO:GO:0032922 GO:GO:0048573 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237512
GO:GO:0043966 ProtClustDB:CLSN2689417 EMBL:AY091106 EMBL:AY122969
IPI:IPI00517009 RefSeq:NP_187571.2 UniGene:At.40072
ProteinModelPortal:Q8RWU3 SMR:Q8RWU3 STRING:Q8RWU3 PRIDE:Q8RWU3
EnsemblPlants:AT3G09600.1 GeneID:820117 KEGG:ath:AT3G09600
TAIR:At3g09600 InParanoid:Q8RWU3 OMA:RVISPQH PhylomeDB:Q8RWU3
Genevestigator:Q8RWU3 Uniprot:Q8RWU3
Length = 298
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 130/248 (52%), Positives = 151/248 (60%)
Query: 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 109
E SKK+RKPYTITKSRESWTE EHDKFLEALQLFDRDWKKIE F+GSKTVIQIRSHAQK
Sbjct: 27 EGSSKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 86
Query: 110 YFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRP 169
YFLKVQKNGT H+ QKASKNA M PG +
Sbjct: 87 YFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMPLQVSTSFTTTRNGDMPG-YASW 145
Query: 170 DSSSMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGG 229
D +SML+ + S ++ SKG + N S ST S T G
Sbjct: 146 DDASMLLNRVISPQHELAT-LRGAEADIGSKG--LLNVSSPSTSGMG----SSSRTVSGS 198
Query: 230 ELTDQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNLSI 289
E+ + L +PDFA+VY FIGSVFDP HV+KLK+MDPI+ ETVLLLMRNL++
Sbjct: 199 EIVRKAKQPPVLHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTV 258
Query: 290 NLTSPDFE 297
NL++PD E
Sbjct: 259 NLSNPDLE 266
>TAIR|locus:2151251 [details] [associations]
symbol:LCL1 "LHY/CCA1-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 GO:GO:0005634 EMBL:CP002688
GO:GO:0046686 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0003677 GO:GO:0007623 GO:GO:0009651 GO:GO:0003700
GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009739 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237512
EMBL:AY519514 EMBL:AJ937209 IPI:IPI00528959 RefSeq:NP_568108.1
RefSeq:NP_850756.1 UniGene:At.20108 ProteinModelPortal:Q6R0G4
SMR:Q6R0G4 STRING:Q6R0G4 EnsemblPlants:AT5G02840.1
EnsemblPlants:AT5G02840.2 GeneID:831766 KEGG:ath:AT5G02840
TAIR:At5g02840 eggNOG:NOG319149 InParanoid:Q6R0G4 OMA:AYTITKS
PhylomeDB:Q6R0G4 ProtClustDB:CLSN2689417 Genevestigator:Q6R0G4
Uniprot:Q6R0G4
Length = 293
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 128/250 (51%), Positives = 155/250 (62%)
Query: 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 109
E P KK+RK YTITKSRESWTE EHDKFLEALQLFDRDWKKIE F+GSKTVIQIRSHAQK
Sbjct: 32 EAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 91
Query: 110 YFLKVQKNGTAEHLXXXXXXXXXXXXXXQKASKNAPMLXXXXXXXXXXXXXLEPGHFLRP 169
YFLKVQKNGT H+ QKASKNA M L PG+
Sbjct: 92 YFLKVQKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNL-PGYTPWD 150
Query: 170 DSSSMLMIPMASAATSWTNNVQTVSLSPASKGP-EVANNRSNSTDSTPKARVSGELTDQG 228
D +S L+ S + + T+ + G ++ + S S + S L+D
Sbjct: 151 DDTSALLNIAVSGVIPPEDELDTLCGAEVDVGSNDMISETSPSASGIGSS--SRTLSDSK 208
Query: 229 G-ELTDQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMRNL 287
G L Q + H L PDFA+VY FIGSVFDP++ ++KLK+MDPI+ ETVLLLMRNL
Sbjct: 209 GLRLAKQAPSMHGL---PDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNL 265
Query: 288 SINLTSPDFE 297
++NL++PDFE
Sbjct: 266 TVNLSNPDFE 275
>DICTYBASE|DDB_G0288783 [details] [associations]
symbol:mybG "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 dictyBase:DDB_G0288783 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GenomeReviews:CM000154_GR
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AAFI02000125 RefSeq:XP_636518.1 HSSP:Q5VVJ2
ProteinModelPortal:Q54IF9 PRIDE:Q54IF9 EnsemblProtists:DDB0220514
GeneID:8626803 KEGG:ddi:DDB_G0288783 eggNOG:NOG279643 OMA:NNTGERI
Uniprot:Q54IF9
Length = 423
Score = 299 (110.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 55/71 (77%), Positives = 62/71 (87%)
Query: 53 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 112
S K RKPYTI+K RE+WT+ EH KFLEAL LFDRDWKKIE+F+GSKTVIQIRSHAQKYF+
Sbjct: 28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFI 87
Query: 113 KVQKNGTAEHL 123
KVQKN T E +
Sbjct: 88 KVQKNNTGERI 98
Score = 124 (48.7 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 33/143 (23%), Positives = 69/143 (48%)
Query: 164 GHFLRPDSSSMLMIPMASAATSWTN------NVQTVSLSPASKGPEVANNRSNSTDSTPK 217
G F+ PDS S +S+ +W N+ ++P+ ++ + +
Sbjct: 121 GAFI-PDSLSGNHFISSSSFATWMTYRGLMPNISESQINPSDLQKQL-EQLQQAQQYIQQ 178
Query: 218 ARVSGELTDQGGELT-DQGNNSHPLRVLPDFAQVYTFIGSVFDPNASDHVQKLKKMDPID 276
A + + + + G L + +N+ + P+F ++Y F+ ++F+ N + + L + ID
Sbjct: 179 AVTTAQSSQRNGGLPPNPSSNNGGTTLTPNFPKIYAFLSNLFESNGTSFTEALSDLSMID 238
Query: 277 VETVLLLMRNLSINLTSPDFEDH 299
ET+ +LM NL+INL + + D+
Sbjct: 239 RETMQILMHNLAINLANQQYRDN 261
Score = 40 (19.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 206 NNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
NN +N+ ++ + + GG+ DQ +++
Sbjct: 333 NNNNNNNNNNNNNNNNNNNNNNGGDFGDQNHSN 365
Score = 40 (19.1 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 182 AATSWTNNVQTVSLSPASKGPEVANNRS---NSTDSTPKARVSGELTDQGGELTDQGNNS 238
A + +N QT+S K E + + + +ST VSG+ D + NN+
Sbjct: 254 ANQQYRDNHQTLSEQYRMKRDEDEDLNAIMISPRNSTGNINVSGDFYDNNSNNNNNNNNN 313
Query: 239 H 239
+
Sbjct: 314 N 314
>TAIR|locus:2044345 [details] [associations]
symbol:CCA1 "circadian clock associated 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0010243 "response to
organic nitrogen" evidence=IEP] [GO:0048574 "long-day
photoperiodism, flowering" evidence=IGI;RCA] [GO:0007623 "circadian
rhythm" evidence=IEP;IGI;RCA;IMP;TAS] [GO:0019904 "protein domain
specific binding" evidence=ISS] [GO:0043496 "regulation of protein
homodimerization activity" evidence=IMP] [GO:0009409 "response to
cold" evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042754 "negative regulation of circadian rhythm"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009639 "response to red or far
red light" evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0042752 "regulation of
circadian rhythm" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 GO:GO:0009737
GO:GO:0005634 GO:GO:0046686 GO:GO:0045892 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733 GO:GO:0009753
GO:GO:0009723 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0043565 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739
GO:GO:0010243 GO:GO:0043496 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC005310 GO:GO:0048574
EMBL:U28422 EMBL:U79156 EMBL:AY519511 EMBL:BT001096 EMBL:BT001105
IPI:IPI00522826 IPI:IPI00545715 PIR:T02684 RefSeq:NP_850460.1
RefSeq:NP_850461.1 UniGene:At.10956 ProteinModelPortal:P92973
SMR:P92973 IntAct:P92973 STRING:P92973 PRIDE:P92973
EnsemblPlants:AT2G46830.1 GeneID:819296 KEGG:ath:AT2G46830
GeneFarm:1652 TAIR:At2g46830 eggNOG:NOG310744 HOGENOM:HOG000084594
InParanoid:P92973 KO:K12134 OMA:HPEMANE PhylomeDB:P92973
ProtClustDB:CLSN2918288 GO:GO:0042754 Uniprot:P92973
Length = 608
Score = 234 (87.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 43/72 (59%), Positives = 55/72 (76%)
Query: 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 109
ED K RKPYTITK RE WTE EH++F+EAL+L+ R W+KIE + +KT +QIRSHAQK
Sbjct: 8 EDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQK 67
Query: 110 YFLKVQKNGTAE 121
+F KV+K A+
Sbjct: 68 FFSKVEKEAEAK 79
Score = 47 (21.6 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 203 EVANNRSNSTDSTPKARVSGELTDQGGELTDQG 235
E N S + ++R+S +TD ++D+G
Sbjct: 457 EDTNKPQTSESNARRSRISSNITDPWKSVSDEG 489
>TAIR|locus:2167210 [details] [associations]
symbol:RVE1 "REVEILLE 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0007623 "circadian rhythm" evidence=IEP;RCA] [GO:0009734 "auxin
mediated signaling pathway" evidence=IMP] [GO:0009851 "auxin
biosynthetic process" evidence=IMP] [GO:0010600 "regulation of
auxin biosynthetic process" evidence=IMP] [GO:0009651 "response to
salt stress" evidence=RCA] [GO:0009723 "response to ethylene
stimulus" evidence=RCA] [GO:0009733 "response to auxin stimulus"
evidence=RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=RCA] [GO:0009751 "response to salicylic acid stimulus"
evidence=RCA] [GO:0009753 "response to jasmonic acid stimulus"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 EMBL:CP002688 GO:GO:0009734 GO:GO:0003677
GO:GO:0007623 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009851 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010600 IPI:IPI00524365
RefSeq:NP_568344.2 UniGene:At.21718 ProteinModelPortal:F4KGY6
SMR:F4KGY6 EnsemblPlants:AT5G17300.1 GeneID:831595
KEGG:ath:AT5G17300 OMA:TKERERW Uniprot:F4KGY6
Length = 387
Score = 237 (88.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 51 DPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110
D + K+RKPYTITK RE WT+ EH KF+EAL+L+ R W++IE +GSKT +QIRSHAQK+
Sbjct: 40 DYAPKVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKF 99
Query: 111 FLKVQKNGT 119
F KV + T
Sbjct: 100 FSKVAREAT 108
>TAIR|locus:2169135 [details] [associations]
symbol:RVE2 "REVEILLE 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
[GO:0009651 "response to salt stress" evidence=IEP;RCA] [GO:0009723
"response to ethylene stimulus" evidence=IEP;RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP;RCA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP;RCA] [GO:0009739
"response to gibberellin stimulus" evidence=IEP;RCA] [GO:0009751
"response to salicylic acid stimulus" evidence=IEP;RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=IEP;RCA] [GO:0007623
"circadian rhythm" evidence=IEP;RCA] [GO:0009845 "seed germination"
evidence=IMP] [GO:0009909 "regulation of flower development"
evidence=IMP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 GO:GO:0009737 EMBL:CP002688 GO:GO:0009733
GO:GO:0009753 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 GO:GO:0009845
GO:GO:0009909 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00528444
RefSeq:NP_198542.1 UniGene:At.30502 UniGene:At.68589
ProteinModelPortal:F4K5X6 SMR:F4K5X6 PRIDE:F4K5X6
EnsemblPlants:AT5G37260.1 GeneID:833700 KEGG:ath:AT5G37260
OMA:SSHTEES ArrayExpress:F4K5X6 Uniprot:F4K5X6
Length = 287
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
K RKPYTITK RE WTE EH+KF+EAL+L+ R W++IE +G+KT +QIRSHAQK+F KV
Sbjct: 25 KTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKV 84
Query: 115 QKN 117
++
Sbjct: 85 ARD 87
>TAIR|locus:504955668 [details] [associations]
symbol:AT3G10113 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002686 GO:GO:0006355 GO:GO:0003677 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
UniGene:At.27131 IPI:IPI00534114 RefSeq:NP_683543.1
UniGene:At.53244 ProteinModelPortal:F4J2J6 SMR:F4J2J6
EnsemblPlants:AT3G10113.1 GeneID:820173 KEGG:ath:AT3G10113
PhylomeDB:F4J2J6 Uniprot:F4J2J6
Length = 336
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 37/60 (61%), Positives = 51/60 (85%)
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
K+RKPYT+TK RE W+E EHD+FLEA++L+ R W++I+ IG+KT +QIRSHAQK+F K+
Sbjct: 54 KVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFFSKM 113
>TAIR|locus:2200970 [details] [associations]
symbol:LHY "LATE ELONGATED HYPOCOTYL" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IEP;RCA] [GO:0009733 "response to auxin stimulus"
evidence=IEP;RCA] [GO:0009737 "response to abscisic acid stimulus"
evidence=IEP;RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IEP;RCA] [GO:0009751 "response to salicylic acid stimulus"
evidence=IEP;RCA] [GO:0009753 "response to jasmonic acid stimulus"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0048574 "long-day photoperiodism, flowering"
evidence=IGI;RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA;IMP] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0007623 "circadian rhythm"
evidence=IGI;RCA] [GO:0009409 "response to cold" evidence=IGI]
[GO:0042754 "negative regulation of circadian rhythm" evidence=IMP]
[GO:0009639 "response to red or far red light" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0046686 GO:GO:0009733 GO:GO:0009753 GO:GO:0009723
GO:GO:0007623 GO:GO:0009651 GO:GO:0009409 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0044212 GO:GO:0009739 GO:GO:0043433
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0048574 HOGENOM:HOG000084594 GO:GO:0042754
EMBL:AC007323 EMBL:AJ006404 EMBL:AY519507 EMBL:AK316728
EMBL:AK316829 IPI:IPI00517620 RefSeq:NP_001030924.1
RefSeq:NP_171614.1 RefSeq:NP_849568.1 UniGene:At.25466
ProteinModelPortal:Q6R0H1 SMR:Q6R0H1 IntAct:Q6R0H1 STRING:Q6R0H1
PRIDE:Q6R0H1 EnsemblPlants:AT1G01060.1 EnsemblPlants:AT1G01060.2
EnsemblPlants:AT1G01060.3 GeneID:839341 KEGG:ath:AT1G01060
GeneFarm:1653 TAIR:At1g01060 eggNOG:NOG269073 InParanoid:Q6R0H1
KO:K12133 OMA:QKFFTKL PhylomeDB:Q6R0H1 ProtClustDB:CLSN2682827
Uniprot:Q6R0H1
Length = 645
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 109
E+ K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE IG+KT +QIRSHAQK
Sbjct: 8 EELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQK 67
Query: 110 YFLKVQK 116
+F K++K
Sbjct: 68 FFTKLEK 74
>TAIR|locus:2014114 [details] [associations]
symbol:EPR1 "EARLY-PHYTOCHROME-RESPONSIVE1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009651 "response to salt stress" evidence=IEP]
[GO:0009723 "response to ethylene stimulus" evidence=IEP]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=IEP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 EMBL:CP002684
GO:GO:0046686 GO:GO:0009723 GO:GO:0003677 GO:GO:0007623
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC013354 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00891668
RefSeq:NP_001117304.1 UniGene:At.27131 ProteinModelPortal:B3H5A8
SMR:B3H5A8 EnsemblPlants:AT1G18330.2 GeneID:838413
KEGG:ath:AT1G18330 TAIR:At1g18330 eggNOG:NOG263004
HOGENOM:HOG000064617 OMA:NSCTSDI PhylomeDB:B3H5A8
ProtClustDB:CLSN2682175 Genevestigator:B3H5A8 Uniprot:B3H5A8
Length = 372
Score = 224 (83.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 37/60 (61%), Positives = 51/60 (85%)
Query: 55 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114
K+RKPYT+TK RE W+E EHD+FLEA++L+ R W++I+ IG+KT +QIRSHAQK+F K+
Sbjct: 65 KVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFFSKM 124
>DICTYBASE|DDB_G0277927 [details] [associations]
symbol:mybH "SWIRM domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000555
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF01398 Pfam:PF04433 PROSITE:PS50934
SMART:SM00232 SMART:SM00717 dictyBase:DDB_G0277927 GO:GO:0005634
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000023 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 eggNOG:NOG329351 HSSP:Q5VVJ2 RefSeq:XP_642011.1
ProteinModelPortal:Q54Z40 MEROPS:M67.A12 EnsemblProtists:DDB0220617
GeneID:8621224 KEGG:ddi:DDB_G0277927 KO:K11865 OMA:PIQQSPI
Uniprot:Q54Z40
Length = 1217
Score = 160 (61.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118
+R SWT+ E F+EA +L+D+D KKI+ + +KT++Q+RSHAQK+ LK++KNG
Sbjct: 149 TRSSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEKNG 202
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 206 NNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
NN +N+ ++ + +G +D GN +
Sbjct: 316 NNNNNNNNNNNNSFFNGNDNGNNSSYSDNGNGN 348
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 187 TNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNN 237
T++ +S + +S + + S+S+ ST + SG + G GN+
Sbjct: 351 TSSKSDLSNTRSSGSSSSSGSSSSSSSSTISSGGSGGRSSGGSSGRSSGNS 401
>DICTYBASE|DDB_G0274463 [details] [associations]
symbol:mybJ "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
dictyBase:DDB_G0274463 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0003682
EMBL:AAFI02000012 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 RefSeq:XP_644160.1 ProteinModelPortal:Q869R9
EnsemblProtists:DDB0220506 GeneID:8619589 KEGG:ddi:DDB_G0274463
eggNOG:NOG264937 OMA:KGAWKEI Uniprot:Q869R9
Length = 734
Score = 139 (54.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 63 TKSRESWTEPEHDKFLEALQLFDRD-WKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119
T ++ WT+ EH +FL +Q+ + WK+I F+G++T QI+SHAQKY+L+ QK T
Sbjct: 373 TSLKQGWTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYLR-QKQET 429
>UNIPROTKB|J9P785 [details] [associations]
symbol:MYSM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 PROSITE:PS50934 SMART:SM00717
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
GeneTree:ENSGT00530000063766 EMBL:AAEX03003792
Ensembl:ENSCAFT00000045716 Uniprot:J9P785
Length = 358
Score = 130 (50.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 50 EDPSKKIRKPYTITKSRE---SWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 106
ED K +++ ++ TKS WT E + F + L F R W KI IGS+TV+Q++S+
Sbjct: 57 EDDKKYMKRAHSPTKSASYSVKWTIEEKELFEQGLAKFGRRWTKIAKLIGSRTVLQVKSY 116
Query: 107 AQKYFL-KVQKNG 118
A++YF KV+ +G
Sbjct: 117 ARQYFKNKVKLDG 129
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 223 ELTDQGGELTDQG---NNSHPLRV-LPDFAQVYTFIGS-VFDPNASDHVQKLKK 271
++TD+ ELT Q N+S+ + + +P + G + N D V K K
Sbjct: 183 DITDEADELTSQAPQKNSSNDVLLNIPSSISHESSQGEFIASYNQEDSVSKSSK 236
>TAIR|locus:2150149 [details] [associations]
symbol:AT5G01200 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AL137189
HOGENOM:HOG000237920 EMBL:AY519530 IPI:IPI00517812 PIR:T45960
RefSeq:NP_195740.1 UniGene:At.27639 ProteinModelPortal:Q9LFB6
SMR:Q9LFB6 EnsemblPlants:AT5G01200.1 GeneID:831676
KEGG:ath:AT5G01200 TAIR:At5g01200 eggNOG:NOG260690
InParanoid:Q9LFB6 OMA:SAANSDY PhylomeDB:Q9LFB6
ProtClustDB:CLSN2916637 ArrayExpress:Q9LFB6 Genevestigator:Q9LFB6
Uniprot:Q9LFB6
Length = 267
Score = 119 (46.9 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKYFLKVQKNG 118
WTE EH +FL L+ + + DW+ I ++F+ ++T Q+ SHAQKYFL+ +G
Sbjct: 148 WTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDG 199
>TAIR|locus:2166459 [details] [associations]
symbol:AT5G05790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB005237
HOGENOM:HOG000237920 ProtClustDB:CLSN2684400 EMBL:AY519531
EMBL:BT026054 IPI:IPI00544524 RefSeq:NP_196198.1 UniGene:At.32952
ProteinModelPortal:Q9FFJ9 SMR:Q9FFJ9 EnsemblPlants:AT5G05790.1
GeneID:830464 KEGG:ath:AT5G05790 TAIR:At5g05790 eggNOG:NOG242423
InParanoid:Q9FFJ9 OMA:ISRNFVG PhylomeDB:Q9FFJ9 ArrayExpress:Q9FFJ9
Genevestigator:Q9FFJ9 Uniprot:Q9FFJ9
Length = 277
Score = 119 (46.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKVQKNGTAE 121
WTE EH +FL L + + DW+ I F+GSKT Q+ SHAQKY+ + Q +G +
Sbjct: 133 WTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQR-QLSGAKD 186
>TAIR|locus:2011216 [details] [associations]
symbol:AT1G19000 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC068602
EMBL:AY045881 EMBL:AY079415 EMBL:AK316815 IPI:IPI00546856
PIR:G86323 RefSeq:NP_173334.1 RefSeq:NP_849689.1 UniGene:At.23413
ProteinModelPortal:Q9LMC7 SMR:Q9LMC7 IntAct:Q9LMC7 STRING:Q9LMC7
PRIDE:Q9LMC7 EnsemblPlants:AT1G19000.1 EnsemblPlants:AT1G19000.2
GeneID:838481 KEGG:ath:AT1G19000 TAIR:At1g19000 InParanoid:Q9LMC7
OMA:GYASAND PhylomeDB:Q9LMC7 ProtClustDB:CLSN2682289
ArrayExpress:Q9LMC7 Genevestigator:Q9LMC7 Uniprot:Q9LMC7
Length = 285
Score = 119 (46.9 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLK 113
WTE EH +FL LQ + DWK I F+ S+T Q+ SHAQKYFL+
Sbjct: 104 WTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKYFLR 150
>TAIR|locus:2151621 [details] [associations]
symbol:AT5G61620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR001005 InterPro:IPR001878
InterPro:IPR009057 Pfam:PF00249 PROSITE:PS50158 SMART:SM00343
SMART:SM00717 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB012239 IPI:IPI00529008
RefSeq:NP_200970.1 UniGene:At.55665 ProteinModelPortal:Q9FKF9
SMR:Q9FKF9 PaxDb:Q9FKF9 PRIDE:Q9FKF9 EnsemblPlants:AT5G61620.1
GeneID:836284 KEGG:ath:AT5G61620 TAIR:At5g61620 eggNOG:NOG325297
HOGENOM:HOG000152521 InParanoid:Q9FKF9 OMA:HNGHNAR PhylomeDB:Q9FKF9
ProtClustDB:CLSN2713497 Genevestigator:Q9FKF9 Uniprot:Q9FKF9
Length = 317
Score = 119 (46.9 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 53 SKKIRKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKI-EAFIGSKTVIQIRSHAQKY 110
SKK + + K + WTE EH FL L + DW+ I ++F+ ++T Q+ SHAQKY
Sbjct: 95 SKKGKTAHEKKKGKP-WTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQVASHAQKY 153
Query: 111 FLKVQKN 117
F+++ N
Sbjct: 154 FIRLNVN 160
>UNIPROTKB|F1NJR7 [details] [associations]
symbol:MYSM1 "Histone H2A deubiquitinase MYSM1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000555
InterPro:IPR001005 InterPro:IPR007526 InterPro:IPR009057
Pfam:PF00249 Pfam:PF01398 Pfam:PF04433 PROSITE:PS50934
SMART:SM00232 SMART:SM00717 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GeneTree:ENSGT00530000063766 EMBL:AADN02012509
IPI:IPI00573219 Ensembl:ENSGALT00000017668 ArrayExpress:F1NJR7
Uniprot:F1NJR7
Length = 829
Score = 121 (47.7 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115
+R P WT E + F + L F R W KI IGS+TV+Q++S+A++YF
Sbjct: 107 VRSPTKPGSYSLKWTSEEKELFEQGLVKFGRRWTKIAKLIGSRTVLQVKSYARQYFKNKA 166
Query: 116 KNGTAE 121
KN +E
Sbjct: 167 KNDGSE 172
Score = 45 (20.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 162 EPGHFLRPDSSSMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKAR-- 219
+P + +P ++L A+ + N ++V+L + T + AR
Sbjct: 277 DPQNTKQPTVDALLFQDGAATCSQHVNGDKSVNLEYQQCNDFIEKAEQGRTGMSHGARQI 336
Query: 220 VSGELTDQGGELTDQGNNSHP 240
EL ++ +L D G HP
Sbjct: 337 TDQELNEEQRDLADNGLLFHP 357
>UNIPROTKB|F1NCM9 [details] [associations]
symbol:MYSM1 "Histone H2A deubiquitinase MYSM1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0004843 "ubiquitin-specific protease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008237 "metallopeptidase
activity" evidence=IEA] [GO:0016578 "histone deubiquitination"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000555 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF01398
Pfam:PF04433 PROSITE:PS50934 SMART:SM00232 SMART:SM00717
GO:GO:0045893 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008237 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0003713 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0016585
GO:GO:0016578 GO:GO:0004843 GO:GO:0004221
GeneTree:ENSGT00530000063766 IPI:IPI00820738 OMA:ENGLIPW
EMBL:AADN02012509 Ensembl:ENSGALT00000038040 ArrayExpress:F1NCM9
Uniprot:F1NCM9
Length = 832
Score = 121 (47.7 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115
+R P WT E + F + L F R W KI IGS+TV+Q++S+A++YF
Sbjct: 109 VRSPTKPGSYSLKWTSEEKELFEQGLVKFGRRWTKIAKLIGSRTVLQVKSYARQYFKNKA 168
Query: 116 KNGTAE 121
KN +E
Sbjct: 169 KNDGSE 174
Score = 45 (20.9 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 162 EPGHFLRPDSSSMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKAR-- 219
+P + +P ++L A+ + N ++V+L + T + AR
Sbjct: 279 DPQNTKQPTVDALLFQDGAATCSQHVNGDKSVNLEYQQCNDFIEKAEQGRTGMSHGARQI 338
Query: 220 VSGELTDQGGELTDQGNNSHP 240
EL ++ +L D G HP
Sbjct: 339 TDQELNEEQRDLADNGLLFHP 359
>TAIR|locus:2042872 [details] [associations]
symbol:AT2G38090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002685 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006122 EMBL:AY519529
EMBL:AK118135 IPI:IPI00542058 RefSeq:NP_181344.2 UniGene:At.46819
ProteinModelPortal:Q8GXN7 SMR:Q8GXN7 EnsemblPlants:AT2G38090.1
GeneID:818387 KEGG:ath:AT2G38090 TAIR:At2g38090
HOGENOM:HOG000237920 InParanoid:Q8GXN7 OMA:HRQFLMG PhylomeDB:Q8GXN7
ProtClustDB:CLSN2918198 Genevestigator:Q8GXN7 Uniprot:Q8GXN7
Length = 298
Score = 118 (46.6 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKVQKNG 118
WTE EH +FL L+ + + DW+ I F+ ++T Q+ SHAQKYF++ Q NG
Sbjct: 143 WTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIR-QVNG 193
>TAIR|locus:2154508 [details] [associations]
symbol:AT5G58900 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB016885
HOGENOM:HOG000237920 EMBL:BT005473 EMBL:AY519533 EMBL:AK118891
IPI:IPI00547099 RefSeq:NP_200698.1 UniGene:At.7757
ProteinModelPortal:Q9FIL9 SMR:Q9FIL9 DNASU:836007
EnsemblPlants:AT5G58900.1 GeneID:836007 KEGG:ath:AT5G58900
TAIR:At5g58900 eggNOG:NOG325121 InParanoid:Q9FIL9 OMA:PFTLDWA
PhylomeDB:Q9FIL9 ProtClustDB:CLSN2914846 ArrayExpress:Q9FIL9
Genevestigator:Q9FIL9 Uniprot:Q9FIL9
Length = 288
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 57 RKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKV 114
R P K WTE EH FL L+ + + DW+ I F+ ++T Q+ SHAQKYF++
Sbjct: 131 RSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 190
Query: 115 QKNG 118
G
Sbjct: 191 LSGG 194
>TAIR|locus:2133667 [details] [associations]
symbol:AT4G09450 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AL161514
HOGENOM:HOG000237920 EMBL:AY122911 IPI:IPI00520050 PIR:C85096
RefSeq:NP_192683.1 UniGene:At.33693 ProteinModelPortal:Q9M0P7
SMR:Q9M0P7 DNASU:826528 EnsemblPlants:AT4G09450.1 GeneID:826528
KEGG:ath:AT4G09450 TAIR:At4g09450 eggNOG:NOG301281
InParanoid:Q9M0P7 OMA:EGLNKFG PhylomeDB:Q9M0P7
ProtClustDB:CLSN2684024 Genevestigator:Q9M0P7 Uniprot:Q9M0P7
Length = 200
Score = 112 (44.5 bits), Expect = 0.00015, P = 0.00015
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEAF-IGSKTVIQIRSHAQKYFLKVQKNGT 119
W+E E FLE L F + DWK I + + S+T Q+ SHAQKYF + ++ T
Sbjct: 93 WSEEEQRLFLEGLNKFGKGDWKNISRYCVKSRTSTQVASHAQKYFARQKQEST 145
>UNIPROTKB|Q5F3F2 [details] [associations]
symbol:MYSM1 "Histone H2A deubiquitinase MYSM1"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016578 "histone deubiquitination"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=ISS] [GO:0008237 "metallopeptidase activity" evidence=ISS]
[GO:0004843 "ubiquitin-specific protease activity" evidence=ISS]
[GO:0042393 "histone binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR000555 InterPro:IPR001005
InterPro:IPR007526 InterPro:IPR009057 Pfam:PF00249 Pfam:PF01398
Pfam:PF04433 PROSITE:PS50934 SMART:SM00232 SMART:SM00717
GO:GO:0045893 GO:GO:0046872 GO:GO:0003677 GO:GO:0006508
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008237 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003713
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0042393 GO:GO:0016585
GO:GO:0016578 GO:GO:0004843 GO:GO:0004221 eggNOG:NOG329351
KO:K11865 EMBL:AJ851698 IPI:IPI00820738 RefSeq:NP_001012945.1
UniGene:Gga.6922 ProteinModelPortal:Q5F3F2 SMR:Q5F3F2
MEROPS:M67.005 GeneID:424671 KEGG:gga:424671 CTD:114803
HOGENOM:HOG000113713 HOVERGEN:HBG079486 InParanoid:Q5F3F2
OrthoDB:EOG4ZGPBQ NextBio:20826977 Uniprot:Q5F3F2
Length = 832
Score = 118 (46.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115
+R P WT E + F + L + R W KI IGS+TV+Q++S+A++YF
Sbjct: 109 VRSPTKPGSYSLKWTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKNKA 168
Query: 116 KNGTAE 121
KN +E
Sbjct: 169 KNDGSE 174
Score = 45 (20.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 162 EPGHFLRPDSSSMLMIPMASAATSWTNNVQTVSLSPASKGPEVANNRSNSTDSTPKAR-- 219
+P + +P ++L A+ + N ++V+L + T + AR
Sbjct: 279 DPQNTKQPTVDALLFQDGAATCSQHVNGDKSVNLEYQQCNDFIEKAEQGRTGMSHGARQI 338
Query: 220 VSGELTDQGGELTDQGNNSHP 240
EL ++ +L D G HP
Sbjct: 339 TDQELNEEQRDLADNGLLFHP 359
>DICTYBASE|DDB_G0289151 [details] [associations]
symbol:mybI "myb domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
dictyBase:DDB_G0289151 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GenomeReviews:CM000154_GR
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017930
PROSITE:PS51294 EMBL:AAFI02000130 RefSeq:XP_636387.1
ProteinModelPortal:Q54HX6 EnsemblProtists:DDB0233332 GeneID:8626988
KEGG:ddi:DDB_G0289151 eggNOG:NOG265212 OMA:CKLIKEN Uniprot:Q54HX6
Length = 977
Score = 122 (48.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 64 KSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116
K WT EH +F+EAL + +D K I ++ ++ Q+R+HAQKYFL++ +
Sbjct: 170 KQSRYWTPEEHSRFIEALSKYGHKDVKSISQYVSTRNPTQVRTHAQKYFLRIDR 223
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 205 ANNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
+NN SN++++ ++D +D+ NNS
Sbjct: 901 SNNNSNNSNNNSSGSSGINISDLNNS-SDENNNS 933
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 205 ANNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
+NN +N++ + +S +L + E + NNS
Sbjct: 905 SNNSNNNSSGSSGINIS-DLNNSSDENNNSSNNS 937
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 206 NNRSNSTDSTPKARVSGELTDQGGELTDQGNNSH 239
NN +N+ ++ ++ + G + NN++
Sbjct: 593 NNNNNNNNNNNNNNINNNNNNNNGNNINNNNNNN 626
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 188 NNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
NN+ + + + NN +N+T++ + T+ + NN+
Sbjct: 433 NNINNNNNNNINNNNSNNNNNNNNTNNNNNNNNNNNNTNNNNNNNNNNNNN 483
Score = 36 (17.7 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 206 NNRSNSTDSTPKARVSGELTDQGGELTDQGNNS 238
NN SN+ + SG G ++D N+S
Sbjct: 898 NNNSNNNSNNSNNNSSGS---SGINISDLNNSS 927
Score = 36 (17.7 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 187 TNNVQTVSLSPASKGPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNN 237
+NN ++ + S NN SN+ ++ + + GNN
Sbjct: 568 SNNNNNINNNNNSNNNNNGNNNSNNNNNNNNNNNNNNNNINNNNNNNNGNN 618
>TAIR|locus:2159607 [details] [associations]
symbol:AT5G08520 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB006697
HOGENOM:HOG000237920 EMBL:AY072090 EMBL:AY096571 EMBL:AY519532
IPI:IPI00516280 RefSeq:NP_196469.1 UniGene:At.8762
ProteinModelPortal:Q9FNN6 SMR:Q9FNN6 STRING:Q9FNN6 PaxDb:Q9FNN6
PRIDE:Q9FNN6 EnsemblPlants:AT5G08520.1 GeneID:830751
KEGG:ath:AT5G08520 TAIR:At5g08520 eggNOG:NOG259915
InParanoid:Q9FNN6 OMA:NSMNRER PhylomeDB:Q9FNN6
ProtClustDB:CLSN2687300 ArrayExpress:Q9FNN6 Genevestigator:Q9FNN6
Uniprot:Q9FNN6
Length = 298
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 68 SWTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKV 114
+WTE EH FL L + + DW+ I F+ ++T Q+ SHAQKYF+++
Sbjct: 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL 167
Score = 42 (19.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 210 NSTDSTPKARVSGELTDQGGELTDQGNNSHP 240
N+ STP+ ++G+ + + NNS P
Sbjct: 187 NADVSTPQGPITGQ-NNSNNNNNNNNNNSSP 216
Score = 37 (18.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 201 GPEVANNRSNSTDSTPKARVSGELTDQGGELTDQGNNSHPLRVLPDFAQ 249
G +NN +N+ ++ V+G + Q P+ P Q
Sbjct: 199 GQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAIGQ 247
>TAIR|locus:2027181 [details] [associations]
symbol:AT1G74840 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009651 "response to salt stress" evidence=IEP] [GO:0009723
"response to ethylene stimulus" evidence=IEP] [GO:0009733 "response
to auxin stimulus" evidence=IEP] [GO:0009737 "response to abscisic
acid stimulus" evidence=IEP] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP] [GO:0009751 "response to salicylic acid
stimulus" evidence=IEP] [GO:0009753 "response to jasmonic acid
stimulus" evidence=IEP] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0046686
GO:GO:0009733 GO:GO:0009753 GO:GO:0009723 GO:GO:0003677
GO:GO:0009651 GO:GO:0003700 GO:GO:0003682 GO:GO:0009751
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009739 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC008263
EMBL:AC013258 HOGENOM:HOG000237594 ProtClustDB:CLSN2682289
EMBL:AY070098 EMBL:AY096393 EMBL:AY519510 IPI:IPI00526439
PIR:H96777 RefSeq:NP_177622.1 UniGene:At.11594
ProteinModelPortal:Q9S7N6 SMR:Q9S7N6 IntAct:Q9S7N6 STRING:Q9S7N6
EnsemblPlants:AT1G74840.1 GeneID:843823 KEGG:ath:AT1G74840
TAIR:At1g74840 InParanoid:Q9S7N6 OMA:GTRREIM PhylomeDB:Q9S7N6
ArrayExpress:Q9S7N6 Genevestigator:Q9S7N6 Uniprot:Q9S7N6
Length = 265
Score = 113 (44.8 bits), Expect = 0.00026, P = 0.00026
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLK 113
WTE EH FL LQ + DWK I F+ ++T Q+ SHAQKYFL+
Sbjct: 98 WTEEEHKLFLLGLQRVGKGDWKGISRNFVKTRTSTQVASHAQKYFLR 144
>ZFIN|ZDB-GENE-041014-28 [details] [associations]
symbol:mysm1 "Myb-like, SWIRM and MPN domains 1"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0016578 "histone
deubiquitination" evidence=ISS] [GO:0004843 "ubiquitin-specific
protease activity" evidence=ISS] [GO:0008237 "metallopeptidase
activity" evidence=IEA;ISS] [GO:0042393 "histone binding"
evidence=ISS] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006508 "proteolysis" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008233 "peptidase activity" evidence=IEA]
InterPro:IPR000555 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF01398 Pfam:PF04433
PROSITE:PS50934 SMART:SM00232 SMART:SM00717 ZFIN:ZDB-GENE-041014-28
GO:GO:0045893 GO:GO:0046872 GO:GO:0003677 GO:GO:0006508
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008237 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003713
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0042393 GO:GO:0016585
GO:GO:0016578 GO:GO:0004843 GO:GO:0004221
GeneTree:ENSGT00530000063766 HSSP:Q5VVJ2 KO:K11865 eggNOG:COG5259
CTD:114803 HOGENOM:HOG000113713 OrthoDB:EOG4ZGPBQ EMBL:BX942841
EMBL:BC134239 IPI:IPI00494402 RefSeq:NP_001157501.1
UniGene:Dr.86682 Ensembl:ENSDART00000044655 GeneID:561225
KEGG:dre:561225 InParanoid:A3KPA5 NextBio:20883824 Bgee:Q5RGA4
Uniprot:Q5RGA4
Length = 822
Score = 121 (47.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 55 KIRKPYTITKSRES-WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++KP + + ++ W E E + F + L F R W KI IG++TV+Q++S+A++YF
Sbjct: 87 KVKKPLVKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSYAKQYF 144
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 269 LKKMDPIDVETVLLLMRNL 287
L+++ +D+ET L+ + +L
Sbjct: 725 LERLSEVDIETFLVQLESL 743
>TAIR|locus:2028461 [details] [associations]
symbol:AT1G49010 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0009739 "response to gibberellin
stimulus" evidence=IEP] [GO:0009751 "response to salicylic acid
stimulus" evidence=IEP] [GO:0009753 "response to jasmonic acid
stimulus" evidence=IEP] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046686
GO:GO:0009733 GO:GO:0009753 GO:GO:0003677 GO:GO:0009651
GO:GO:0003700 GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009739 EMBL:AC016041 InterPro:IPR017884
PROSITE:PS51293 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237920
EMBL:AY086906 EMBL:AY519528 EMBL:BT024862 IPI:IPI00544296
PIR:F96527 RefSeq:NP_564537.1 UniGene:At.38318
ProteinModelPortal:Q9M9A3 SMR:Q9M9A3 STRING:Q9M9A3 PRIDE:Q9M9A3
EnsemblPlants:AT1G49010.1 GeneID:841324 KEGG:ath:AT1G49010
TAIR:At1g49010 eggNOG:NOG253185 InParanoid:Q9M9A3 OMA:YVVPVAY
PhylomeDB:Q9M9A3 ProtClustDB:CLSN2688585 ArrayExpress:Q9M9A3
Genevestigator:Q9M9A3 Uniprot:Q9M9A3
Length = 314
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKV 114
WTE EH FL L F + DW+ I F+ S+T Q+ SHAQKYF+++
Sbjct: 136 WTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRL 183
>UNIPROTKB|A0JMR6 [details] [associations]
symbol:mysm1 "Histone H2A deubiquitinase MYSM1"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0004221 "ubiquitin
thiolesterase activity" evidence=ISS] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008237 "metallopeptidase activity"
evidence=ISS] [GO:0016578 "histone deubiquitination" evidence=ISS]
[GO:0042393 "histone binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000555 InterPro:IPR001005 InterPro:IPR007526
InterPro:IPR009057 Pfam:PF00249 Pfam:PF01398 Pfam:PF04433
PROSITE:PS50934 SMART:SM00232 SMART:SM00717 GO:GO:0045893
GO:GO:0046872 GO:GO:0003677 GO:GO:0006508 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0008237 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0003713 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0042393 GO:GO:0016585 GO:GO:0016578
GO:GO:0004843 GO:GO:0004221 KO:K11865 MEROPS:M67.005 CTD:114803
EMBL:BC125979 RefSeq:NP_001090503.1 UniGene:Xl.3062
ProteinModelPortal:A0JMR6 SMR:A0JMR6 GeneID:779416 KEGG:xla:779416
Xenbase:XB-GENE-1032962 Uniprot:A0JMR6
Length = 818
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 54 KKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111
K++R P + S WT+ E + F + L F R W I IGS++V+Q++++A+ YF
Sbjct: 97 KRVRSPAKASSSPVKWTKEEKNLFEQGLATFGRRWTSIARLIGSRSVLQVKNYARHYF 154
>TAIR|locus:2074723 [details] [associations]
symbol:AT3G11280 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0009739 "response to gibberellin stimulus" evidence=IEP]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 SMART:SM00717
GO:GO:0005634 EMBL:CP002686 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 GO:GO:0009751 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009739 InterPro:IPR017884 PROSITE:PS51293 EMBL:AC073395
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 UniGene:At.23548 EMBL:AY056180 EMBL:AY091265
EMBL:AY550308 IPI:IPI00541857 RefSeq:NP_187737.1 RefSeq:NP_850558.1
ProteinModelPortal:Q9C773 SMR:Q9C773 STRING:Q9C773 PRIDE:Q9C773
DNASU:820299 EnsemblPlants:AT3G11280.1 EnsemblPlants:AT3G11280.2
GeneID:820299 KEGG:ath:AT3G11280 TAIR:At3g11280 InParanoid:Q9C773
OMA:FEAAINF PhylomeDB:Q9C773 ProtClustDB:CLSN2684400
ArrayExpress:Q9C773 Genevestigator:Q9C773 Uniprot:Q9C773
Length = 263
Score = 110 (43.8 bits), Expect = 0.00057, P = 0.00057
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKVQKNGTAE 121
WTE EH +FL L + + DW+ I F+ SKT Q+ SHAQKY+ + Q +G +
Sbjct: 129 WTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQR-QLSGAKD 182
>UNIPROTKB|Q8S9H7 [details] [associations]
symbol:DIVARICATA "Transcription factor DIVARICATA"
species:4151 "Antirrhinum majus" [GO:0009908 "flower development"
evidence=IMP] [GO:0048262 "determination of dorsal/ventral
asymmetry" evidence=IMP] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 SMART:SM00717 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0009908
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0048262 EMBL:AY077453
ProteinModelPortal:Q8S9H7 Uniprot:Q8S9H7
Length = 307
Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 69 WTEPEHDKFLEALQLFDR-DWKKIEA-FIGSKTVIQIRSHAQKYFLKVQKNG 118
WTE EH FL L+ + + DW+ I F+ ++T Q+ SHAQKYF++ G
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGG 185
>DICTYBASE|DDB_G0276877 [details] [associations]
symbol:mybK "SSXT family protein" species:44689
"Dictyostelium discoideum" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
SMART:SM00717 dictyBase:DDB_G0276877 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AAFI02000019
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 InterPro:IPR007726 PANTHER:PTHR23107 Pfam:PF05030
eggNOG:NOG283574 RefSeq:XP_642973.1 ProteinModelPortal:Q86HX9
EnsemblProtists:DDB0220507 GeneID:8620845 KEGG:ddi:DDB_G0276877
Uniprot:Q86HX9
Length = 894
Score = 116 (45.9 bits), Expect = 0.00080, P = 0.00080
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 54 KKIRKPYTITKSRES-WTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111
KK +K +K + S WT EH+KFLEA+Q F +D+ I F+ ++ Q+R+H Y
Sbjct: 641 KKDKKDKKASKEKTSHWTSEEHNKFLEAVQQFGIKDYHAIAKFVQTRNHHQVRTHVNTY- 699
Query: 112 LKVQKNGTA 120
LK QK A
Sbjct: 700 LKNQKKAEA 708
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 254 0.00084 114 3 11 23 0.37 34
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 591 (63 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.75u 0.08s 20.83t Elapsed: 00:00:01
Total cpu time: 20.76u 0.08s 20.84t Elapsed: 00:00:01
Start: Sat May 11 04:31:25 2013 End: Sat May 11 04:31:26 2013