Query 022076
Match_columns 303
No_of_seqs 224 out of 719
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 13:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.7 4.5E-17 1.5E-21 126.3 6.1 62 51-112 3-64 (79)
2 2cu7_A KIAA1915 protein; nucle 99.6 3.6E-16 1.2E-20 117.9 8.7 56 63-118 6-61 (72)
3 2yum_A ZZZ3 protein, zinc fing 99.6 5.5E-16 1.9E-20 117.2 7.1 55 64-118 6-66 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 1.4E-14 4.9E-19 105.5 5.8 48 65-112 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 3E-14 1E-18 104.1 6.5 50 63-112 5-55 (60)
6 2iw5_B Protein corest, REST co 99.5 2E-14 6.7E-19 131.4 5.8 66 50-115 117-182 (235)
7 1guu_A C-MYB, MYB proto-oncoge 99.4 3.7E-13 1.3E-17 95.0 6.3 47 65-111 2-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.4 7.3E-13 2.5E-17 96.1 5.7 48 64-111 6-54 (60)
9 1gvd_A MYB proto-oncogene prot 99.4 6.9E-13 2.4E-17 93.8 5.2 47 65-111 2-49 (52)
10 2din_A Cell division cycle 5-l 99.4 2.4E-12 8.1E-17 95.2 8.2 55 63-118 6-60 (66)
11 2xag_B REST corepressor 1; ami 99.4 4.7E-13 1.6E-17 133.0 5.8 67 50-116 364-430 (482)
12 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.6E-12 9E-17 98.6 8.2 48 65-112 17-68 (73)
13 2cjj_A Radialis; plant develop 99.3 1.8E-12 6.3E-17 103.6 7.0 64 66-130 8-75 (93)
14 2eqr_A N-COR1, N-COR, nuclear 99.3 4.7E-12 1.6E-16 93.1 6.8 44 64-107 10-53 (61)
15 1w0t_A Telomeric repeat bindin 99.3 6.2E-12 2.1E-16 89.4 6.7 46 66-111 2-50 (53)
16 2ltp_A Nuclear receptor corepr 98.9 3.4E-13 1.2E-17 106.0 0.0 54 64-117 14-67 (89)
17 2dim_A Cell division cycle 5-l 99.3 4.2E-12 1.4E-16 94.8 5.8 49 64-112 7-56 (70)
18 1ity_A TRF1; helix-turn-helix, 99.3 8.6E-12 2.9E-16 93.1 7.2 51 63-113 7-60 (69)
19 3sjm_A Telomeric repeat-bindin 99.2 2.7E-11 9.4E-16 90.2 6.8 47 65-111 10-59 (64)
20 2cqq_A RSGI RUH-037, DNAJ homo 99.2 4.6E-11 1.6E-15 91.3 7.9 61 65-128 7-71 (72)
21 1irz_A ARR10-B; helix-turn-hel 99.2 5.6E-11 1.9E-15 89.7 8.1 56 62-117 3-63 (64)
22 2k9n_A MYB24; R2R3 domain, DNA 99.2 8.1E-11 2.8E-15 94.1 7.9 54 64-117 51-104 (107)
23 2llk_A Cyclin-D-binding MYB-li 99.1 1.3E-10 4.6E-15 89.1 6.3 52 56-108 13-64 (73)
24 3osg_A MYB21; transcription-DN 99.1 1.1E-10 3.9E-15 95.8 6.3 49 63-111 8-56 (126)
25 3osg_A MYB21; transcription-DN 99.1 1.4E-10 4.7E-15 95.3 6.5 51 64-114 60-110 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 99.1 1.1E-10 3.7E-15 92.4 5.4 48 64-111 54-101 (105)
27 3zqc_A MYB3; transcription-DNA 99.0 1.7E-10 5.8E-15 95.2 5.7 53 64-116 52-104 (131)
28 2yqk_A Arginine-glutamic acid 99.0 2.3E-10 8E-15 84.8 5.9 43 65-107 8-51 (63)
29 1gv2_A C-MYB, MYB proto-oncoge 99.0 2.1E-10 7.3E-15 90.7 5.2 47 65-111 3-50 (105)
30 2k9n_A MYB24; R2R3 domain, DNA 99.0 3.1E-10 1.1E-14 90.7 5.9 46 66-111 1-47 (107)
31 1wgx_A KIAA1903 protein; MYB D 99.0 5.3E-10 1.8E-14 86.2 6.5 45 66-110 8-56 (73)
32 1h8a_C AMV V-MYB, MYB transfor 99.0 6.3E-10 2.2E-14 91.1 5.9 49 63-111 24-73 (128)
33 3zqc_A MYB3; transcription-DNA 99.0 3.5E-10 1.2E-14 93.3 4.3 46 66-111 2-48 (131)
34 1h8a_C AMV V-MYB, MYB transfor 98.9 3.8E-10 1.3E-14 92.4 4.2 47 64-110 77-123 (128)
35 2crg_A Metastasis associated p 98.9 1.1E-09 3.9E-14 82.9 6.1 44 64-107 6-50 (70)
36 2ckx_A NGTRF1, telomere bindin 98.9 3.4E-09 1.2E-13 83.0 6.7 49 67-115 1-54 (83)
37 2roh_A RTBP1, telomere binding 98.8 1.2E-08 4E-13 85.4 8.9 56 60-115 25-85 (122)
38 2juh_A Telomere binding protei 98.8 7.4E-09 2.5E-13 86.5 7.4 58 57-114 8-70 (121)
39 1h89_C C-MYB, MYB proto-oncoge 98.8 5.1E-09 1.7E-13 88.5 5.7 49 63-111 55-104 (159)
40 2aje_A Telomere repeat-binding 98.8 6.6E-09 2.3E-13 84.8 6.0 54 61-114 8-66 (105)
41 4a69_C Nuclear receptor corepr 98.8 6.2E-09 2.1E-13 82.9 5.7 44 64-107 41-84 (94)
42 1h89_C C-MYB, MYB proto-oncoge 98.8 2.6E-09 9E-14 90.2 3.7 47 64-110 108-154 (159)
43 1x58_A Hypothetical protein 49 98.7 1.2E-08 4.2E-13 76.6 5.9 47 63-109 5-54 (62)
44 4eef_G F-HB80.4, designed hema 98.7 8.3E-10 2.8E-14 85.6 -0.7 43 66-108 20-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.5 7.9E-08 2.7E-12 88.6 4.0 50 64-113 6-61 (246)
46 3hm5_A DNA methyltransferase 1 97.7 9.1E-05 3.1E-09 59.4 7.3 53 65-117 29-86 (93)
47 1fex_A TRF2-interacting telome 97.5 0.00016 5.3E-09 53.1 5.0 46 66-111 2-57 (59)
48 1ofc_X ISWI protein; nuclear p 97.4 0.00017 5.9E-09 68.2 5.7 50 66-115 110-160 (304)
49 2xag_B REST corepressor 1; ami 97.1 6.6E-05 2.2E-09 74.9 0.0 43 65-107 188-230 (482)
50 1ug2_A 2610100B20RIK gene prod 97.1 0.0015 5E-08 52.7 7.2 51 67-117 34-87 (95)
51 2ebi_A DNA binding protein GT- 96.5 0.0045 1.5E-07 47.3 5.8 53 65-117 3-69 (86)
52 4iej_A DNA methyltransferase 1 96.4 0.0084 2.9E-07 48.1 7.3 53 65-117 29-86 (93)
53 4b4c_A Chromodomain-helicase-D 96.1 0.0092 3.2E-07 51.7 6.5 52 65-116 6-62 (211)
54 1ofc_X ISWI protein; nuclear p 96.1 0.012 4.1E-07 55.7 7.7 53 65-117 211-279 (304)
55 2lr8_A CAsp8-associated protei 94.9 0.0013 4.5E-08 50.4 0.0 44 67-111 15-61 (70)
56 2y9y_A Imitation switch protei 95.3 0.018 6.3E-07 55.9 5.3 49 67-115 124-174 (374)
57 1ig6_A MRF-2, modulator recogn 93.5 0.086 2.9E-06 41.8 4.8 55 76-130 37-107 (107)
58 4b4c_A Chromodomain-helicase-D 93.1 0.25 8.5E-06 42.6 7.4 48 66-114 134-196 (211)
59 1ign_A Protein (RAP1); RAP1,ye 90.6 0.47 1.6E-05 43.9 6.5 28 87-114 173-200 (246)
60 2hzd_A Transcriptional enhance 87.9 0.52 1.8E-05 37.0 4.1 47 64-110 4-71 (82)
61 2xb0_X Chromo domain-containin 85.6 0.48 1.6E-05 44.0 3.3 27 66-92 168-195 (270)
62 2xb0_X Chromo domain-containin 85.3 1.8 6E-05 40.2 6.9 45 66-110 3-52 (270)
63 2cxy_A BAF250B subunit, HBAF25 83.7 1.3 4.3E-05 36.1 4.6 30 87-116 74-107 (125)
64 2y9y_A Imitation switch protei 83.1 3.5 0.00012 40.1 8.2 53 66-118 228-296 (374)
65 2li6_A SWI/SNF chromatin-remod 74.7 3 0.0001 33.5 4.1 30 87-116 72-101 (116)
66 2lm1_A Lysine-specific demethy 73.7 7.2 0.00024 30.5 6.0 41 75-116 48-100 (107)
67 1kkx_A Transcription regulator 72.6 5.3 0.00018 32.7 5.1 40 77-116 53-100 (123)
68 2jrz_A Histone demethylase jar 70.9 5.8 0.0002 31.9 4.9 41 76-116 44-96 (117)
69 2eqy_A RBP2 like, jumonji, at 68.6 8.2 0.00028 31.3 5.4 40 77-116 47-98 (122)
70 2jxj_A Histone demethylase jar 68.0 4 0.00014 31.4 3.3 31 86-116 58-92 (96)
71 1c20_A DEAD ringer protein; DN 60.7 11 0.00037 30.6 4.7 40 77-116 57-109 (128)
72 2rq5_A Protein jumonji; develo 55.6 12 0.00041 30.6 4.2 41 76-116 46-99 (121)
73 2kk0_A AT-rich interactive dom 51.8 16 0.00056 30.4 4.5 30 87-116 87-121 (145)
74 1fse_A GERE; helix-turn-helix 51.4 48 0.0017 22.6 6.3 48 66-116 9-56 (74)
75 3e7l_A Transcriptional regulat 51.2 27 0.00091 24.5 4.9 27 71-97 18-44 (63)
76 2o8x_A Probable RNA polymerase 49.0 48 0.0016 22.4 5.9 48 67-116 14-61 (70)
77 3c57_A Two component transcrip 45.4 73 0.0025 23.7 6.9 48 67-117 26-73 (95)
78 1x3u_A Transcriptional regulat 44.9 40 0.0014 23.5 5.1 46 68-116 16-61 (79)
79 1je8_A Nitrate/nitrite respons 42.3 51 0.0017 23.9 5.4 47 67-116 20-66 (82)
80 1ntc_A Protein (nitrogen regul 39.2 47 0.0016 24.9 4.9 40 69-109 48-87 (91)
81 3i4p_A Transcriptional regulat 38.2 32 0.0011 28.0 4.2 42 72-118 3-45 (162)
82 3ulq_B Transcriptional regulat 37.9 71 0.0024 23.9 5.8 47 66-115 27-73 (90)
83 3mzy_A RNA polymerase sigma-H 37.2 81 0.0028 24.0 6.2 33 83-116 122-154 (164)
84 1ku3_A Sigma factor SIGA; heli 33.4 1.1E+02 0.0037 21.3 5.9 47 68-115 10-59 (73)
85 1ngr_A P75 low affinity neurot 33.1 33 0.0011 26.0 3.2 29 71-105 12-40 (85)
86 2yqf_A Ankyrin-1; death domain 30.8 80 0.0027 24.6 5.2 35 70-105 14-48 (111)
87 1umq_A Photosynthetic apparatu 30.3 58 0.002 24.6 4.2 29 69-97 38-66 (81)
88 3hug_A RNA polymerase sigma fa 29.6 1.4E+02 0.0048 21.7 6.1 32 84-116 52-83 (92)
89 2ib1_A Death domain containing 29.3 11 0.00039 29.1 -0.0 34 71-106 5-38 (91)
90 1p4w_A RCSB; solution structur 28.1 1.4E+02 0.0049 22.7 6.1 46 67-115 33-78 (99)
91 2rnj_A Response regulator prot 27.5 89 0.003 22.8 4.7 47 67-116 28-74 (91)
92 2lc3_A E3 ubiquitin-protein li 27.2 64 0.0022 25.5 3.9 57 63-119 10-85 (88)
93 2dbb_A Putative HTH-type trans 25.2 1.2E+02 0.0043 23.7 5.5 42 72-118 9-51 (151)
94 2jt1_A PEFI protein; solution 24.7 1.4E+02 0.0049 22.1 5.4 46 74-124 6-58 (77)
95 2e1c_A Putative HTH-type trans 24.6 98 0.0034 25.6 5.0 44 71-119 26-70 (171)
96 2cyy_A Putative HTH-type trans 23.7 1.4E+02 0.0047 23.6 5.5 42 72-118 7-49 (151)
97 1eto_A FIS, factor for inversi 23.2 1.2E+02 0.0041 23.4 4.9 27 71-97 57-83 (98)
98 2of5_H Leucine-rich repeat and 22.2 1.1E+02 0.0037 24.3 4.5 29 75-104 14-42 (118)
99 1tty_A Sigma-A, RNA polymerase 21.8 1.9E+02 0.0066 20.8 5.6 46 70-116 20-68 (87)
100 2o71_A Death domain-containing 21.7 1.1E+02 0.0039 24.3 4.6 21 77-97 27-47 (115)
101 2p7v_B Sigma-70, RNA polymeras 20.9 1.4E+02 0.0048 20.4 4.5 46 70-116 7-55 (68)
102 1or7_A Sigma-24, RNA polymeras 20.8 2.2E+02 0.0074 22.5 6.2 31 85-116 156-186 (194)
103 1wxp_A THO complex subunit 1; 20.4 90 0.0031 24.3 3.7 27 76-103 20-46 (110)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-17 Score=126.33 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=57.4
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHH
Q 022076 51 DPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (303)
Q Consensus 51 ~~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~ 112 (303)
-+++|.++++.....+..||+||+++||+||++||++|++||++|++||..||+.||++|++
T Consensus 3 sg~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 3 SGSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CcccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 36788899999999999999999999999999999999999999999999999999987743
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=3.6e-16 Score=117.91 Aligned_cols=56 Identities=39% Similarity=0.679 Sum_probs=52.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
...++.||+||+++|++++++||.+|..||.+|++||..|||+||++||.+..+.|
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999999999999999999987665
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=117.21 Aligned_cols=55 Identities=36% Similarity=0.671 Sum_probs=51.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 64 KSRESWTEPEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yG------rdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
..++.||.|||++|+++|+.|| .+|.+||++|++||..|||.||++||.++.+.|
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999999999999 799999999999999999999999999987766
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.4e-14 Score=105.48 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 112 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg-TRT~~QIrSHaQKYf~ 112 (303)
.++.||.||+++|++++++|| .+|++||++|+ +||..|||.||++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 367899999999999999999 79999999999 9999999999999985
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=3e-14 Score=104.13 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=46.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QIrSHaQKYf~ 112 (303)
...+..||.||+++|++++++|| .+|++||++|++||..|||.||++|+.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 34578999999999999999999 699999999999999999999999865
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.48 E-value=2e-14 Score=131.44 Aligned_cols=66 Identities=26% Similarity=0.471 Sum_probs=61.6
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 022076 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 50 e~~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~ 115 (303)
++...+.|+|+++.+....||+||+.+|++||.+||+||..||++|++||..||++||.+|+.+++
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 567778899999999999999999999999999999999999999999999999999999977744
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.40 E-value=3.7e-13 Score=95.00 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
+++.||.||+++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998 9999999999999999999999886
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=7.3e-13 Score=96.12 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=44.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
..++.||.||+++|++++++|| ++|.+||++|++||..||+.||++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 4678999999999999999999 59999999999999999999998874
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.35 E-value=6.9e-13 Score=93.76 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
.++.||.||+++|++++++||. +|.+||.+|++||..|||.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 7999999999999999999999875
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-12 Score=95.19 Aligned_cols=55 Identities=22% Similarity=0.461 Sum_probs=49.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
...++.||.||+++|+++++.||.+|.+||.++ +||..|||.||++|+....+.+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCC
Confidence 346789999999999999999999999999955 5999999999999999877654
No 11
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.35 E-value=4.7e-13 Score=132.95 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=60.5
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 50 EDPSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 50 e~~~kk~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
+.+....|.++.+.+....||+||+.+|++||.+||+||+.|+++|||||..|||+||++|+.++..
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCh
Confidence 4556667889999999999999999999999999999999999999999999999999998776543
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=2.6e-12 Score=98.55 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QIrSHaQKYf~ 112 (303)
.++.||.||+.+|++||+.|| .+|.+||++|++||..||+.||+++..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999 589999999999999999999987643
No 13
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.33 E-value=1.8e-12 Score=103.61 Aligned_cols=64 Identities=17% Similarity=0.428 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 022076 66 RESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRPKR 130 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g~~~~iP~prpKR 130 (303)
.+.||.||+++|++||..|| .+|.+||++|++||..||+.||++++.++... +...+|.|.+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i-esg~vp~P~y~~ 75 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI-ESGKVPFPNYRT 75 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH-HHSSCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hcCCCCCCCCCC
Confidence 47899999999999999997 58999999999999999999999998887544 345688887653
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.7e-12 Score=93.11 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHa 107 (303)
+....||+||+++|+++|.+||++|.+||.+|++||..||+.||
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999875
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.28 E-value=6.2e-12 Score=89.44 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 111 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QIrSHaQKYf 111 (303)
++.||+||+++|+++++.|| .+|..|+.+++ +||..||+.+|.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999 69999999999 999999999998875
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-13 Score=106.02 Aligned_cols=54 Identities=28% Similarity=0.400 Sum_probs=49.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~ 117 (303)
..++.||.||+++|+++++.||.+|..||.+|++||..||+.||.+|+.++...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 456899999999999999999999999999999999999999999998876543
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.2e-12 Score=94.84 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 112 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QIrSHaQKYf~ 112 (303)
..++.||.||+++|++++++|| .+|.+||.+|++||..|||.||++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 699999999999999999999988743
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.27 E-value=8.6e-12 Score=93.05 Aligned_cols=51 Identities=14% Similarity=0.342 Sum_probs=46.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 113 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~Vg--TRT~~QIrSHaQKYf~k 113 (303)
.+.++.||.||+++|++++++|| .+|.+|+.+++ +||..||+.+|.+|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 44678999999999999999999 69999999999 99999999999988654
No 19
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.20 E-value=2.7e-11 Score=90.22 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhC--CCCHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIG--SKTVIQIRSHAQKYF 111 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~Vg--TRT~~QIrSHaQKYf 111 (303)
.+..||+||+++|++++++||. +|.+|+++++ +||..||+.+|.++.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999994 9999999876 899999999998764
No 20
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=4.6e-11 Score=91.32 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=51.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 022076 65 SRESWTEPEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRP 128 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG----rdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g~~~~iP~prp 128 (303)
....||.||+.+|.+||.+|+ .+|.+||+++ .||..||+.||+++.... ......+|.|++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~--~~~~G~vp~P~~ 71 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV--TCSPGMVSGPSS 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC--CCCSCCCSCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc--CccCCCCCCCCC
Confidence 357899999999999999998 4899999999 599999999999885553 235677887764
No 21
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.19 E-value=5.6e-11 Score=89.72 Aligned_cols=56 Identities=32% Similarity=0.426 Sum_probs=50.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCch---HHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 022076 62 ITKSRESWTEPEHDKFLEALQLFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 62 ~tk~r~~WT~EEh~lFLeaLe~yGrd---WkkIA~~Vg--TRT~~QIrSHaQKYf~kl~k~ 117 (303)
..+.+-.||+|+|++|++|++.+|.+ |++|-++++ +.|..||+||.|||+.++.|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 45678999999999999999999964 899999877 579999999999999999764
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=8.1e-11 Score=94.06 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=49.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~ 117 (303)
..++.||.||+.+|+++++.||.+|..||.+|++||..||+.||..+..++.+.
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 357899999999999999999999999999999999999999999888877654
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=89.12 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=43.6
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHH
Q 022076 56 IRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 108 (303)
Q Consensus 56 ~rkPyt~tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQ 108 (303)
....+....+++.||+||++++++++++||.+|.+||+++ +||..|||.||.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 4455556678899999999999999999999999999999 999999999985
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.09 E-value=1.1e-10 Score=95.78 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=45.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
...++.||.||+++|++++++||.+|+.||++|++||..||+.||.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3467899999999999999999999999999999999999999999885
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.08 E-value=1.4e-10 Score=95.27 Aligned_cols=51 Identities=25% Similarity=0.450 Sum_probs=46.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl 114 (303)
..++.||.||+++|++++++||.+|.+||.+|++||..||+.||..+..++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999999987775554
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.07 E-value=1.1e-10 Score=92.39 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
..++.||.||+.+|+++++.||.+|..||++|++||..||+.||..+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999987664
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.05 E-value=1.7e-10 Score=95.19 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=48.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
..++.||.||+++|+++++.||..|..||.+|++||..||+.||..++.+...
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999988766443
No 28
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=84.85 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QIrSHa 107 (303)
....||+||+.+|++||.+||+||.+|+. +|++||..||..+|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHH
Confidence 45799999999999999999999999998 69999999999875
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.02 E-value=2.1e-10 Score=90.70 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
.++.||.||+++|+++++.||. +|..||++|++||..||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998874
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.01 E-value=3.1e-10 Score=90.66 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
++.||.||+++|+++++.||. +|..||.+|++||..||+.||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 368999999999999999996 9999999999999999999998874
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=5.3e-10 Score=86.21 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 110 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QIrSHaQKY 110 (303)
...||.||+.+|++||..|++ +|.+||++||+||.+||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999995 799999999999999999997644
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.96 E-value=6.3e-10 Score=91.11 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
...++.||.||+++|+++++.||. +|.+||.+|++||..||+.||.+|+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 346789999999999999999996 8999999999999999999998764
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.96 E-value=3.5e-10 Score=93.28 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
++.||.||+++|+++++.|| .+|..||.+|++||..||+.||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 47899999999999999999 69999999999999999999999885
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.95 E-value=3.8e-10 Score=92.40 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKY 110 (303)
..++.||+||+++|++++++||.+|.+||++|++||..||++||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 35
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.94 E-value=1.1e-09 Score=82.87 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 107 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~-~VgTRT~~QIrSHa 107 (303)
+....||+||+.+|++||.+||+||..|+. +|++||..||..||
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 456899999999999999999999999998 79999999999975
No 36
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.87 E-value=3.4e-09 Score=83.05 Aligned_cols=49 Identities=10% Similarity=0.337 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHH----hCCCCHHHHHHHHHHHHHHHh
Q 022076 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~----VgTRT~~QIrSHaQKYf~kl~ 115 (303)
.+||.||++.|++++++||. +|++|++. +.+||..||+.+|.+++.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999985 789999999999999877653
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.82 E-value=1.2e-08 Score=85.42 Aligned_cols=56 Identities=13% Similarity=0.318 Sum_probs=48.9
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHHh
Q 022076 60 YTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 60 yt~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QIrSHaQKYf~kl~ 115 (303)
....+.++.||.||++.|++++++||. +|++|+.+. ..||..||+.+|.+++..-.
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 345557899999999999999999997 999999764 79999999999999877653
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.82 E-value=7.4e-09 Score=86.50 Aligned_cols=58 Identities=12% Similarity=0.338 Sum_probs=50.7
Q ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 022076 57 RKPYTITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (303)
Q Consensus 57 rkPyt~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QIrSHaQKYf~kl 114 (303)
|.+....+.+++||.||++.|++++++||. +|.+|+.+. ..||..||+.+|.+++...
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 344556678899999999999999999997 999999875 7899999999999987764
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.79 E-value=5.1e-09 Score=88.46 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=45.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
...++.||.||+.+|+++++.||. +|..||.+|++||..||+.||.+|+
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 346799999999999999999996 8999999999999999999998774
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.79 E-value=6.6e-09 Score=84.82 Aligned_cols=54 Identities=9% Similarity=0.326 Sum_probs=46.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 022076 61 TITKSRESWTEPEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 114 (303)
Q Consensus 61 t~tk~r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~V----gTRT~~QIrSHaQKYf~kl 114 (303)
...+.+++||.||++.|++|+++||. +|++|+... ..||..||+.+|.+++.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34557899999999999999999997 999999754 7899999999998886543
No 41
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.78 E-value=6.2e-09 Score=82.91 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHa 107 (303)
+....||+||+++|.+++..||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999875
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.78 E-value=2.6e-09 Score=90.21 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=43.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 110 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKY 110 (303)
..++.||+||+.+|++++++||.+|.+||.+|++||..||++||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.75 E-value=1.2e-08 Score=76.61 Aligned_cols=47 Identities=13% Similarity=0.413 Sum_probs=42.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHH---HHhCCCCHHHHHHHHHH
Q 022076 63 TKSRESWTEPEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQK 109 (303)
Q Consensus 63 tk~r~~WT~EEh~lFLeaLe~yGrdWkkIA---~~VgTRT~~QIrSHaQK 109 (303)
+.++..||+||++.|++|+++||+.|++|+ .|+..||.+.++..|.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 347889999999999999999999999999 58889999999997653
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.74 E-value=8.3e-10 Score=85.56 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 108 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr----dWkkIA~~VgTRT~~QIrSHaQ 108 (303)
...||.||+++|..||..|++ +|.+||+.||+||..||+.|||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999996 7999999999999999999987
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.46 E-value=7.9e-08 Score=88.64 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=44.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCch------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 113 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGrd------WkkIA~~VgTRT~~QIrSHaQKYf~k 113 (303)
..+..||+||++++|+++++||.. |..||.++++||..|||+||.+|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999974 99999999999999999999988654
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.70 E-value=9.1e-05 Score=59.40 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 022076 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~V-----gTRT~~QIrSHaQKYf~kl~k~ 117 (303)
....||.||.+.|++.+++||-+|-.|+... +.||.+++++++-..-.++.+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999877 5799999999986666666543
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.45 E-value=0.00016 Score=53.09 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-chHHHHHH-HhCCCCHHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~y--------G-rdWkkIA~-~VgTRT~~QIrSHaQKYf 111 (303)
+..||+||+..+++.|..| | +-|+.|++ .+..+|-.++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 5 37999999 899999999999988864
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.38 E-value=0.00017 Score=68.19 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 022076 66 RESWTEPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf~kl~ 115 (303)
=..||..+-..|+.|+++||+ +|..||..|++||..+|+.|++-|+.+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHH
Confidence 347999999999999999998 99999999999999999999998877763
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.14 E-value=6.6e-05 Score=74.94 Aligned_cols=43 Identities=14% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 022076 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 107 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHa 107 (303)
....||++|+.+|.++|..||++|.+|+.+|++||..+|..||
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 3468999999999999999999999999999999999999885
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.08 E-value=0.0015 Score=52.73 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 022076 67 ESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~ 117 (303)
..||.||++-+|.+.++-|. .|..||..++.|++.||+.++|....-+++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999996 8999999999999999999998765555443
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.50 E-value=0.0045 Score=47.28 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----------chHHHHHHHhC----CCCHHHHHHHHHHHHHHHhhc
Q 022076 65 SRESWTEPEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG----------rdWkkIA~~Vg----TRT~~QIrSHaQKYf~kl~k~ 117 (303)
....||.+|..+||++..... ..|+.||+.+. .||+.||+..+.+......+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999996532 17999997764 799999999988776665543
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.45 E-value=0.0084 Score=48.13 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 022076 65 SRESWTEPEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGrdWkkIA~~V-----gTRT~~QIrSHaQKYf~kl~k~ 117 (303)
....||.||.+.|.+.+++|+-+|--|+... +.||.++++.|+=....++.+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999999554 3799999999987777776653
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.14 E-value=0.0092 Score=51.68 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---chHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 022076 65 SRESWTEPEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yG---rdWkkIA~~--VgTRT~~QIrSHaQKYf~kl~k 116 (303)
....||+.|-..|+.|+.+|| .+|..|++. +..||..+|+.+++.+..+..+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999 389999865 4589999999999887776544
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.13 E-value=0.012 Score=55.68 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 022076 65 SRESWTEPEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 65 ~r~~WT~EEh~lFLeaLe~yGr----dWkkIA------------~~VgTRT~~QIrSHaQKYf~kl~k~ 117 (303)
++..||+|||..||-+|.+||- +|.+|. -|+.+||+.+|..|++-...-+.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999995 799996 3888999999999998766666654
No 55
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.90 E-value=0.0013 Score=50.44 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHH
Q 022076 67 ESWTEPEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYF 111 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr---dWkkIA~~VgTRT~~QIrSHaQKYf 111 (303)
..||.||+.-+|...++-|. -|..||.-+ .||+.||..++|...
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 48999999999999999996 899999888 799999999987653
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.25 E-value=0.018 Score=55.89 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHHhC-CCCHHHHHHHHHHHHHHHh
Q 022076 67 ESWTEPEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGr-dWkkIA~~Vg-TRT~~QIrSHaQKYf~kl~ 115 (303)
..||..+=..|+.|+++||+ +-..|+..|+ +||..+|+.+++-|+.+..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~ 174 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIE 174 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhh
Confidence 47999999999999999998 7999999998 9999999999887776653
No 57
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=93.53 E-value=0.086 Score=41.84 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=38.2
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCC-----CCHHHHHHHHHHHHH---HHhhcCCCCCCCCCCCCC
Q 022076 76 KFLEALQLFD--------RDWKKIEAFIGS-----KTVIQIRSHAQKYFL---KVQKNGTAEHLPPPRPKR 130 (303)
Q Consensus 76 lFLeaLe~yG--------rdWkkIA~~VgT-----RT~~QIrSHaQKYf~---kl~k~g~~~~iP~prpKR 130 (303)
+|-.++...| +.|++|++-+|- -...+++.||++|+. +..+......+|+.+||+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 3445566777 379999988873 224789999999944 333344567788888864
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.10 E-value=0.25 Score=42.61 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLKV 114 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA~--~------------VgTRT~~QIrSHaQKYf~kl 114 (303)
...||.+|+..||.|+.+|| .+|..|-. - ..+.+..++..++. |++++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 45799999999999999999 69999963 1 12456778888886 55554
No 59
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=90.57 E-value=0.47 Score=43.86 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=25.1
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 022076 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 114 (303)
Q Consensus 87 dWkkIA~~VgTRT~~QIrSHaQKYf~kl 114 (303)
-|++|+++.+.+|...+|.++.|++.+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999876553
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.89 E-value=0.52 Score=36.98 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=35.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc---hH-------------HHHHHHh-----CCCCHHHHHHHHHHH
Q 022076 64 KSRESWTEPEHDKFLEALQLFDR---DW-------------KKIEAFI-----GSKTVIQIRSHAQKY 110 (303)
Q Consensus 64 k~r~~WT~EEh~lFLeaLe~yGr---dW-------------kkIA~~V-----gTRT~~QIrSHaQKY 110 (303)
+..+.|+++=+..|++||+.|-. .. .-|++|| ..||..||-||-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHH
Confidence 34689999999999999999852 11 2245555 379999999999944
No 61
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.65 E-value=0.48 Score=44.00 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFD-RDWKKIE 92 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yG-rdWkkIA 92 (303)
.-.|+.+|+..||.||-+|| +.|.+|.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 45799999999999999999 5999996
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.26 E-value=1.8 Score=40.23 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCc---hHHHHH--HHhCCCCHHHHHHHHHHH
Q 022076 66 RESWTEPEHDKFLEALQLFDR---DWKKIE--AFIGSKTVIQIRSHAQKY 110 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr---dWkkIA--~~VgTRT~~QIrSHaQKY 110 (303)
.+.||+.|-..|+.+|.+||. +|..|. .-+..|+...|+.-++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 478999999999999999994 899997 345678888777665543
No 63
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=83.67 E-value=1.3 Score=36.15 Aligned_cols=30 Identities=10% Similarity=0.397 Sum_probs=24.1
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 022076 87 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 87 dWkkIA~~VgTRT----~~QIrSHaQKYf~kl~k 116 (303)
.|++|++.+|--+ ..++|.||++|+....+
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 7999999887543 57999999999776554
No 64
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=83.09 E-value=3.5 Score=40.07 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 66 RESWTEPEHDKFLEALQLFDR----DWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGr----dWkkIA~------------~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
+..||++|+..+|-+|.+||- .|.+|-. |+.+||+.+|..|+.-...-+.|..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999994 6999932 3779999999999986666666654
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.68 E-value=3 Score=33.46 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 87 DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 87 dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
.|+.|++-+|-....++|.||++|+.....
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 799999999876688999999999766543
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=73.71 E-value=7.2 Score=30.48 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 022076 75 DKFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 75 ~lFLeaLe~yG--------rdWkkIA~~VgTRT----~~QIrSHaQKYf~kl~k 116 (303)
.+|. .+...| +.|++|++.+|--. ..++|.||++|+.....
T Consensus 48 ~Ly~-~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 48 TLHR-IVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHH-HHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 4444 455566 37999999887533 57999999999877654
No 67
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=72.58 E-value=5.3 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 77 FLEALQLFD--------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 77 FLeaLe~yG--------rdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
|-..+.+.| +.|++|++-+|--...++|.||+||+....+
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 344456666 3799999999876699999999999888776
No 68
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=70.88 E-value=5.8 Score=31.89 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 022076 76 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 76 lFLeaLe~yG--------rdWkkIA~~VgTRT----~~QIrSHaQKYf~kl~k 116 (303)
+|-..+...| +.|++|++-+|-.. ..++|.||++|+.....
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3444566666 37999999887533 67999999999766554
No 69
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=68.63 E-value=8.2 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 022076 77 FLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 77 FLeaLe~yG--------rdWkkIA~~VgTRT----~~QIrSHaQKYf~kl~k 116 (303)
|-..+.+.| +.|++|++-+|-.. ..++|.||+||+....+
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 344456666 37999999887532 46999999999777655
No 70
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=67.98 E-value=4 Score=31.37 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=23.9
Q ss_pred chHHHHHHHhCCC----CHHHHHHHHHHHHHHHhh
Q 022076 86 RDWKKIEAFIGSK----TVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 86 rdWkkIA~~VgTR----T~~QIrSHaQKYf~kl~k 116 (303)
+.|++|++.+|-- ...++|.||++|+....+
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~ 92 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYEL 92 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 3799999988742 267999999999776543
No 71
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=60.73 E-value=11 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 022076 77 FLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 77 FLeaLe~yG--------rdWkkIA~~VgTR-----T~~QIrSHaQKYf~kl~k 116 (303)
|-..+...| +.|++|++.+|-- ...++|.||++|+....+
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334455666 3799999888731 268999999999777554
No 72
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.61 E-value=12 Score=30.62 Aligned_cols=41 Identities=12% Similarity=0.412 Sum_probs=29.6
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhh
Q 022076 76 KFLEALQLFD--------RDWKKIEAFIGS-----KTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 76 lFLeaLe~yG--------rdWkkIA~~VgT-----RT~~QIrSHaQKYf~kl~k 116 (303)
+|-..+.+.| +.|++|++-+|- -...++|.||.||+.....
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 3444555566 379999988862 2257999999999887664
No 73
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=51.76 E-value=16 Score=30.35 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=23.5
Q ss_pred hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 022076 87 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 87 dWkkIA~~VgTR-----T~~QIrSHaQKYf~kl~k 116 (303)
.|++|++-+|-- ...++|.||++|+.....
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 799999888732 267999999999666544
No 74
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=51.44 E-value=48 Score=22.59 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
...+|+.|.+.|.. + ..|...++||+.+|- +...|+.|..+-+.++..
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 45688888877766 4 667899999999986 888999988877777653
No 75
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=51.22 E-value=27 Score=24.46 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 022076 71 EPEHDKFLEALQLFDRDWKKIEAFIGS 97 (303)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (303)
+-|...+.++|+.+|.++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 458889999999999999999999995
No 76
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.01 E-value=48 Score=22.36 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
..+++.|...|.. .-..|..+++||+.+|- +...|+.+..+-..++.+
T Consensus 14 ~~L~~~~r~il~l-~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLL-TQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHH-HHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHH-HHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 3567666665543 33567899999999986 788888887777777754
No 77
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.37 E-value=73 Score=23.73 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 022076 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 117 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~ 117 (303)
...|+.|.+.|.. + ..|..-++||+.+|- +...|+.|..+-+.++...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4678888877776 4 778899999999986 8899999988888888654
No 78
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.92 E-value=40 Score=23.46 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 68 SWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 68 ~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
.+|+.|.+.|.. + ..|...++||+.+|- +...|+.|...-+.++..
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 467777776655 4 567899999999985 788899888777766643
No 79
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.29 E-value=51 Score=23.93 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
...|+.|.+.|.. + ..|..-++||+.+|- +...|+.|..+-+.++..
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcC
Confidence 4688888877766 4 678899999999985 888999988777776643
No 80
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=39.25 E-value=47 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHH
Q 022076 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 109 (303)
Q Consensus 69 WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQK 109 (303)
..+-|...+.++|+.+|.+..+.|+.+|- +...+....++
T Consensus 48 l~~~E~~~i~~aL~~~~gn~~~aA~~LGI-sr~tL~rklkk 87 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQGHKQEAARLLGW-GAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 34568889999999999999999999984 33344333333
No 81
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=38.22 E-value=32 Score=27.98 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
+-+.++|+.|+.-|+ .|+.||+.+|- +...|+.|.+ ++.+.|
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~----~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQ----KMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHH----HHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCC
Confidence 457789999999888 99999999986 8888988754 455555
No 82
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.95 E-value=71 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 022076 66 RESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 66 r~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~ 115 (303)
...-|+.|.+.|.... -|..-++||+.++- +...|+.|..+-+.|+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 4556788877665544 78899999999985 88999999888877764
No 83
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=37.23 E-value=81 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=23.6
Q ss_pred HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 83 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 83 ~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
..|...+.||+.+|- +...|+++.++-..++.+
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 346689999999885 677777776666555544
No 84
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.39 E-value=1.1e+02 Score=21.26 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 022076 68 SWTEPEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 68 ~WT~EEh~lFLeaLe~---yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~ 115 (303)
.-++.|.+.|..-+-. .|..|+.||+.+|- +...|+.|-.+-+.++.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 3456666666544422 46799999999985 77888887777777776
No 85
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=33.09 E-value=33 Score=26.05 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHH
Q 022076 71 EPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (303)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrS 105 (303)
.+|-.++|. |+||+..|+.+|- +..+|+.
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~-~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY-QPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC-CHHHHHH
Confidence 355566666 9999999999997 4556654
No 86
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=30.84 E-value=80 Score=24.59 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHH
Q 022076 70 TEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 105 (303)
Q Consensus 70 T~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrS 105 (303)
++.-+..|..--+..|.+|+++|..+|- +..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~-s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQF-SVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTC-CHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCC-CHHHHHH
Confidence 4545556666668889999999999985 4444433
No 87
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=30.34 E-value=58 Score=24.64 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 022076 69 WTEPEHDKFLEALQLFDRDWKKIEAFIGS 97 (303)
Q Consensus 69 WT~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (303)
..+-|.+.+.++|+++|.+..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 33567888999999999999999999984
No 88
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.56 E-value=1.4e+02 Score=21.68 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=23.2
Q ss_pred cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 84 FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 84 yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
.|...+.||+.+|- +...|+.|..+-+.++.+
T Consensus 52 ~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 52 RGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 36688999988884 677777777666666654
No 89
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=29.32 E-value=11 Score=29.12 Aligned_cols=34 Identities=12% Similarity=0.326 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHH
Q 022076 71 EPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 106 (303)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSH 106 (303)
.||-.++|.. ..-|+||+..|+.+|- +..+|...
T Consensus 5 r~~v~~ll~~-~~~G~dW~~LA~~Lg~-~~~~I~~i 38 (91)
T 2ib1_A 5 QEEVQRLLMM-GEPAKGWQELAGHLGY-QAEAVETM 38 (91)
T ss_dssp HHTTHHHHTT-TCCSSTHHHHHHHHTC-CHHHHHHH
T ss_pred HHHHHHHhcC-CCCCccHHHHHHHcCC-CHHHHHHH
Confidence 3566777875 5569999999999996 45666553
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.05 E-value=1.4e+02 Score=22.74 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 022076 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 115 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~ 115 (303)
..-|+.|.+.|.. + ..|...++||+.++- +...|+.|.+.-+.++.
T Consensus 33 ~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 4567888877755 3 368899999999986 88999999888777764
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.48 E-value=89 Score=22.79 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 67 ESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 67 ~~WT~EEh~lFLeaLe~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
...|+.|.+.|.. + ..|..-++||+.+|- +...|+.|..+-+.++..
T Consensus 28 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 4678888887766 4 678899999999985 888999988777777653
No 92
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=27.25 E-value=64 Score=25.51 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=41.3
Q ss_pred ccCCCCCCHHH-----------HHHHHHHHHHcC-----chHHH---HHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 022076 63 TKSRESWTEPE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (303)
Q Consensus 63 tk~r~~WT~EE-----------h~lFLeaLe~yG-----rdWkk---IA~~VgTRT~~QIrSHaQKYf~kl~k~g~ 119 (303)
+-..+.||.|+ ..-++.-|+..| ++||- |.....++.-.|...-|.++|..-.+.|+
T Consensus 10 ~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 10 NGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp SCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred cCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 44578999999 445667777777 36764 44566788899999988888887666553
No 93
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.15 E-value=1.2e+02 Score=23.71 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
+-+..+|..|+..|+ .|+.||+.+|- +...|+.+. .++.+.|
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARRI----DKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCC
Confidence 445688899999887 99999999996 777787764 4455555
No 94
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.65 E-value=1.4e+02 Score=22.11 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHHHHHHHc-----Cc--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022076 74 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLP 124 (303)
Q Consensus 74 h~lFLeaLe~y-----Gr--dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g~~~~iP 124 (303)
.+..|+.|+.+ |. .-..|++.+|- +...|+. |+..+.+.|.-...|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecC
Confidence 45677888887 54 79999999998 7777766 677788777544333
No 95
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.62 E-value=98 Score=25.56 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 022076 71 EPEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 119 (303)
Q Consensus 71 ~EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g~ 119 (303)
++-+.++|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~rl----~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHERI----RKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHH----HHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 4556789999999887 99999999995 788888764 45565553
No 96
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.71 E-value=1.4e+02 Score=23.59 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 022076 72 PEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 118 (303)
Q Consensus 72 EEh~lFLeaLe~yGr-dWkkIA~~VgTRT~~QIrSHaQKYf~kl~k~g 118 (303)
+-+..+|..|+..|+ .|+.||+.+|- +...|+.|.+ ++.+.|
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l~----~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIR----KLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCC
Confidence 445688999999887 99999999996 7888877654 455555
No 97
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=23.17 E-value=1.2e+02 Score=23.43 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 022076 71 EPEHDKFLEALQLFDRDWKKIEAFIGS 97 (303)
Q Consensus 71 ~EEh~lFLeaLe~yGrdWkkIA~~VgT 97 (303)
+-|...+.++|+.+|.+..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 467888999999999999999999984
No 98
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.24 E-value=1.1e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.409 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCchHHHHHHHhCCCCHHHHH
Q 022076 75 DKFLEALQLFDRDWKKIEAFIGSKTVIQIR 104 (303)
Q Consensus 75 ~lFLeaLe~yGrdWkkIA~~VgTRT~~QIr 104 (303)
..|..--+..|.+|+.+|..+|- +..+|.
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~Lg~-s~~~I~ 42 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHLGV-SYREVQ 42 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHTTC-CHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHcCC-CHHHHH
Confidence 34555558889999999999985 344443
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=21.78 E-value=1.9e+02 Score=20.82 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 70 TEPEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 70 T~EEh~lFLeaLe~---yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
++.|.+.|..-+-. .|..++.||+.+|- +...|+.|-.+-+.++.+
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgi-s~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNV-TRERIRQIEVKALRKLRH 68 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHBT
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 45555555433321 35699999999984 777888877766677654
No 100
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=21.75 E-value=1.1e+02 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=16.5
Q ss_pred HHHHHHHcCchHHHHHHHhCC
Q 022076 77 FLEALQLFDRDWKKIEAFIGS 97 (303)
Q Consensus 77 FLeaLe~yGrdWkkIA~~VgT 97 (303)
|...-+..|++|+.++..+|-
T Consensus 27 l~~Ia~~LG~~Wk~LAR~LGl 47 (115)
T 2o71_A 27 INQLAQRLGPEWEPMVLSLGL 47 (115)
T ss_dssp HHHHHHHCCTTHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCC
Confidence 333357789999999999985
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.89 E-value=1.4e+02 Score=20.35 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHH---HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 70 TEPEHDKFLEALQ---LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 70 T~EEh~lFLeaLe---~yGrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
++.|.+.|..-+- ..|..+++||+.+|- +...|+.|..+-+.++.+
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 4555555443321 136799999999985 788888877666666653
No 102
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.82 E-value=2.2e+02 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.1
Q ss_pred CchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 022076 85 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 116 (303)
Q Consensus 85 GrdWkkIA~~VgTRT~~QIrSHaQKYf~kl~k 116 (303)
|...+.||+.+|- +...|+++..+-..++.+
T Consensus 156 g~s~~EIA~~lgi-s~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 156 GLSYEEIAAIMDC-PVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 5688999998885 677787777766666654
No 103
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.41 E-value=90 Score=24.30 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHcCchHHHHHHHhCCCCHHHH
Q 022076 76 KFLEALQLFDRDWKKIEAFIGSKTVIQI 103 (303)
Q Consensus 76 lFLeaLe~yGrdWkkIA~~VgTRT~~QI 103 (303)
.|-.--+..|++|+.++..+|- +..+|
T Consensus 20 ~~~~ia~~lg~~Wk~LAr~Lg~-~~~~I 46 (110)
T 1wxp_A 20 QIEVFANKLGEQWKILAPYLEM-KDSEI 46 (110)
T ss_dssp HHHHHHHHHTTTHHHHTTTTTC-CHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhCC-CHHHH
Confidence 3444446679999999999985 33344
Done!