BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022077
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 339 bits (869), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/233 (69%), Positives = 185/233 (79%), Gaps = 6/233 (2%)
Query: 56 WATQAAAPQAAGVAVP---PQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
WA Q + Q +A P G P E+R+LWIGDLQYWMDE YL+TCF HTGE+V+ K
Sbjct: 55 WAQQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAK 114
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
VIRNKQTGQ EGYGF+EF S A AE +LQT+NGT MPN EQNFR+NWAS GAGE+RDD+
Sbjct: 115 VIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSA 174
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+HTIFVGDLAADVTDY+LQETF++ Y S +GAKVV DR+TGR+KGYGFV+F DESEQLRA
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
MTEMNGV CSTRPMRIGPA NKK V Q KA+YQN Q Q + DPNNTT+
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQ---KATYQNPQATQGESDPNNTTI 284
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 42 MMMPPQPQAQPPAMWATQAAAPQAAGVAVPPQQQGQPG-EIRTLWIGDLQYWMDETYLNT 100
++ +P PA PQ A P QG+ T+++G L + E +L
Sbjct: 241 VLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQ 300
Query: 101 CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160
F+ GE+V VK++ K+ GF++F +RA AE+ L + NGT + G Q+ RL+W
Sbjct: 301 VFSPYGELVHVKIVAGKRC------GFVQFGTRASAEQALSSLNGTQL--GGQSIRLSWG 352
Query: 161 SFGAGEKRDDT 171
+ ++ D T
Sbjct: 353 RSPSSKQTDQT 363
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
T+++GDL + + L F V KV+ ++ TG+ +GYGF++F + R +
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235
Query: 141 QTFNGT-----PMPNGEQNFR--------LNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
NG PM G + + + A + D + TIFVG L V +
Sbjct: 236 TEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAE 295
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F S G V + + G K GFV+FG + +A++ +NG + +R
Sbjct: 296 EHLRQVF-----SPYGELVHVKIVAG--KRCGFVQFGTRASAEQALSSLNGTQLGGQSIR 348
Query: 248 I 248
+
Sbjct: 349 L 349
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 335 bits (859), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/289 (64%), Positives = 206/289 (71%), Gaps = 31/289 (10%)
Query: 1 MMQPAPGAVPP--PPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQAQPPAMWAT 58
M QP PG + P PPP A QY YQQ PP PP MW
Sbjct: 2 MQQPPPGGILPHHAPPPSAQQQYGYQQPYGIAGAAPP----------------PPQMWNP 45
Query: 59 QAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ 118
QAAAP P Q EIRTLWIGDLQYWMDE +L CFAHTGE+V+ KVIRNKQ
Sbjct: 46 QAAAP-------PSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQ 98
Query: 119 TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKRDDTPDHTIF 177
TGQ+EGYGFIEF S A AERVLQTFN P+P+ +Q FRLNWAS +G+KRDD+PD+TIF
Sbjct: 99 TGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIF 158
Query: 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
VGDLAADVTDY+L ETFRA YPS KGAKVVIDR+TGRTKGYGFVRF DESEQ+RAMTEMN
Sbjct: 159 VGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Query: 238 GVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVA-QSDDDPNNTTV 285
GV CSTRPMRIGPA +KK V+GQ+ SYQ+S +D+DPNNTTV
Sbjct: 219 GVPCSTRPMRIGPAASKKGVTGQRD----SYQSSAAGVTTDNDPNNTTV 263
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 83 TLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
T+++GDL + D L T A V KV+ ++ TG+ +GYGF+ F + R +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 142 TFNGTPMP------------NGEQNFRLNWASFGAGEKRDDTPDHT-IFVGDLAADVTDY 188
NG P G R ++ S AG D+ P++T +FVG L A VTD
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+ F S G V + G K GFV+F ++S A+ +NGV +R+
Sbjct: 276 HLKNVF-----SQYGEIVHVKIPAG--KRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + + +L F+ GE+V VK+ K+ GF++F ++ AE L+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEALRM 315
Query: 143 FNGTPMPNGEQNFRLNWA 160
NG + G RL+W
Sbjct: 316 LNGVQL--GGTTVRLSWG 331
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 291 bits (744), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/240 (61%), Positives = 168/240 (70%), Gaps = 10/240 (4%)
Query: 52 PPAMWATQAAAPQAAGVAVPPQQQ-----GQPGEIRTLWIGDLQYWMDETYLNTCFAHTG 106
PPA W Q+A G GEIR+LWIGDLQ WMDE YL F TG
Sbjct: 45 PPAGWNQQSAPSSGQPQQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTG 104
Query: 107 EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGE 166
E A KVIRNKQ G EGYGFIEF++ A AER LQT+NG PMP+ EQ FRLNWA GAGE
Sbjct: 105 EATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGE 164
Query: 167 KRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225
+R + P+HT+FVGDLA DVTD+ML ETF+A Y S KGAKVV DR TGR+KGYGFVRF D
Sbjct: 165 RRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFAD 224
Query: 226 ESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTV 285
ESEQ+RAMTEMNG +CS+RPMR GPA NKK ++ Q ASYQN+Q + DP NTT+
Sbjct: 225 ESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ----PASYQNTQGNSGESDPTNTTI 280
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 75 QGQPGEI----RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
QG GE T+++G + + E L + F GE+V VK+ K+ G F+++
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQY 320
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160
+RA AE+ L NGT + G Q+ RL+W
Sbjct: 321 ANRACAEQALSVLNGTQL--GGQSIRLSWG 348
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/220 (64%), Positives = 168/220 (76%), Gaps = 7/220 (3%)
Query: 69 AVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
+ Q G ++++LWIGDLQ WMDE Y+ + FA +GE + KVIRNK TGQ EGYGFI
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 129 EFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT--PDHTIFVGDLAADVT 186
EF+S + AERVLQT+NG PMP+ EQ FRLNWA GAGEKR T PDHTIFVGDLA +VT
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246
DYML +TF+ Y S KGAKVV+DR TGR+KGYGFVRF DE+EQ+RAMTEMNG +CSTRPM
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQS-DDDPNNTTV 285
RIGPA NK + Q A YQN+Q A + D+DPNNTT+
Sbjct: 227 RIGPAANKNALPMQ----PAMYQNTQGANAGDNDPNNTTI 262
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
T+++GDL + + L+ F + G V KV+ ++ TG+ +GYGF+ F R +
Sbjct: 154 HTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAM 213
Query: 141 QTFNG-----TPM---PNGEQNF-----RLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
NG PM P +N + + GA +D + TIFVG L A+VTD
Sbjct: 214 TEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L+ F ++ K+ + GFV++ +++ A++ +NG + +R
Sbjct: 274 DELKSIF-GQFGELLHVKIPPGKRC------GFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 248 IGPATNKKTVSGQQQYPKASY 268
+ + S Q Q+ Y
Sbjct: 327 LSWGRSPNKQSDQAQWNGGGY 347
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/190 (71%), Positives = 154/190 (81%), Gaps = 1/190 (0%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E+RTLWIGDLQYW+DE YL +CF+ TGE+V+VKVIRNK TGQ EGYGFIEFIS A AER
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
LQT+NGT MP E FRLNWASFG+G+K D PDH+IFVGDLA DVTDY+LQETFR Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259
S +GAKVV D TGR+KGYGFV+F +ESE+ RAM EMNG++CSTRPMRI AT KK V
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 260 QQQY-PKASY 268
QQQY KA Y
Sbjct: 202 QQQYVTKAVY 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 74 QQGQPGEIRTLWIGDL-----QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFI 128
Q+ G ++++GDL Y + ET+ H V KV+ + TG+ +GYGF+
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFR----VHYSSVRGAKVVTDPSTGRSKGYGFV 163
Query: 129 EFISRAGAERVLQTFNG-------------TPMPN-GEQNFRLNWASF------------ 162
+F + R + NG TP N G Q + A +
Sbjct: 164 KFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPV 223
Query: 163 --GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220
D TI V +L +VT+ L++ F ++ +V+ ++ TKGYG+
Sbjct: 224 QAYVAPPESDVTCTTISVANLDQNVTEEELKKAF------SQLGEVIYVKIPA-TKGYGY 276
Query: 221 VRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
V+F A+ M G + +RI + N
Sbjct: 277 VQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKN 309
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 276 bits (707), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/226 (60%), Positives = 168/226 (74%), Gaps = 12/226 (5%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
P Q Q + +T+WIGDLQ WMDE+YL++CF+ GEV++VK+IRNKQTGQ E YGF+EF
Sbjct: 73 PTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT-PDHTIFVGDLAADVTDYM 189
+ A AE+VLQ++NGT MPN EQ FRLNWA F GEKR +T D +IFVGDLA+DVTD M
Sbjct: 133 NTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTM 192
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L++TF +RYPS KGAKVV+D TG +KGYGFVRFGDESE+ RAMTEMNGV+CS+R MRIG
Sbjct: 193 LRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIG 252
Query: 250 PATNKKTVSGQQQYP------KASYQNSQVA----QSDDDPNNTTV 285
AT KK S +QY Y ++ A QSD D +NTT+
Sbjct: 253 VATPKKP-SAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFI 131
+++ + G ++++GDL + +T L FA + KV+ + TG +GYGF+ F
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227
Query: 132 SRAGAERVLQTFNG-------------TPM-PNGEQNFRL-------NWASFGA---GEK 167
+ R + NG TP P+ + + +AS GA G +
Sbjct: 228 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQ 287
Query: 168 RD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226
D D+ + TIFVG L ++VTD L+++F + G V + G KG GFV+F D
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSF-----NQFGEVVSVKIPAG--KGCGFVQFSDR 340
Query: 227 SEQLRAMTEMNGVFCSTRPMRI 248
S A+ +++G + +R+
Sbjct: 341 SSAQEAIQKLSGAIIGKQAVRL 362
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 67 GVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYG 126
G A Q T+++G L + + L F GEVV+VK+ K G G
Sbjct: 280 GAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------GCG 333
Query: 127 FIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160
F++F R+ A+ +Q +G + G+Q RL+W
Sbjct: 334 FVQFSDRSSAQEAIQKLSGAII--GKQAVRLSWG 365
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 160/213 (75%), Gaps = 7/213 (3%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+++TLW+GDL +WMDETYL+TCF+HT EV +VKVIRNKQT Q EGYGF+EF+SR+ AE
Sbjct: 117 DVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETFRAR 197
LQ+F+G MPN EQ FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF R
Sbjct: 177 LQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGR 236
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
YPS KGAKVVID TGR+KGYGFVRFGDE+E+ RAMTEMNG FCS+R MR+G AT K+
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA 296
Query: 258 S-----GQQQYPKASYQNSQVAQSDDDPNNTTV 285
+ G Q A + SD + NN+T+
Sbjct: 297 AYGQQNGSQALTLAGGHGGNGSMSDGESNNSTI 329
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 36/226 (15%)
Query: 83 TLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL D L T V KV+ + TG+ +GYGF+ F R +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 142 TFNG-------------TPMP-------NGEQNFRLNWASFGAGEKRD-DTPDHTIFVGD 180
NG TP NG Q L G G D ++ + TIFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L ADVT+ L + F S G V + G KG GFV+F + A+ +NG
Sbjct: 334 LDADVTEEDLMQPF-----SDFGEVVSVKIPVG--KGCGFVQFANRQSAEEAIGNLNGTV 386
Query: 241 CSTRPMRI--GPATNK--KTVSGQQ---QYPKASYQNSQVAQSDDD 279
+R+ G + NK ++ SG Q Y + N+ A D +
Sbjct: 387 IGKNTVRLSWGRSPNKQWRSDSGNQWNGGYSRGQGYNNGYANQDSN 432
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 121/191 (63%), Positives = 154/191 (80%), Gaps = 2/191 (1%)
Query: 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRA 134
+G +++TLW+GDL +WMDETYL++CF+HTGEV +VKVIRNK T Q EGYGF+EF+SRA
Sbjct: 101 RGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRA 160
Query: 135 GAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQE 192
AE VLQ ++G+ MPN +Q FR+NWASF GEKR ++ PD ++FVGDL+ DVTD +L E
Sbjct: 161 AAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
TF RYPS K AKVVID TGR+KGYGFVRFGDE+E+ RA+TEMNG +CS R MR+G AT
Sbjct: 221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT 280
Query: 253 NKKTVSGQQQY 263
K+ ++ QQQ+
Sbjct: 281 PKRAIANQQQH 291
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 42/212 (19%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + + L+ F+ V + KV+ + TG+ +GYGF+ F R L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 142 TFNGTPMPNGEQNFRLNWA---------------------------SFGAGEKRD-DTPD 173
NG N + R+ A S G G + D ++ +
Sbjct: 263 EMNGAYCSN--RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233
TIFVG + DV D L++ F +++ K+ + KG GFV+F D A+
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAI 373
Query: 234 TEMNGVFCSTRPMRI--GPATNK--KTVSGQQ 261
+NG +R+ G + NK + SGQQ
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQ 405
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/236 (56%), Positives = 165/236 (69%), Gaps = 19/236 (8%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCF--AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDLQ WMDE YLN+ F A E+V++KVIRNK G EGYGF+EF S A
Sbjct: 100 GENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VLQ FNG PMPN +Q FRLNWASF GEKR ++ PD +IFVGDLA DV+D +L ETF
Sbjct: 160 DKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETF 219
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 220 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 279
Query: 255 KTVSGQQQ---YPKASYQNSQVAQSDDDPNNTTV------STVVIFNIKNPVFQTF 301
KT QQQ P ++ +S+ D NTT+ S+V ++K P F F
Sbjct: 280 KTNGYQQQGGYMPSGAF-----TRSEGDTINTTIFVGGLDSSVTDEDLKQP-FSEF 329
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + + L+ F+ V A KV+ + TG+ +GYGF+ F + +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 142 TFNGTPMP--------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
NG NG Q S DT + TIFVG L + VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F S G V + G KG GFV+F + A+ ++NG + +R
Sbjct: 320 EDLKQPF-----SEFGEIVSVKIPVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 372
Query: 248 IGPATN 253
+ N
Sbjct: 373 LSWGRN 378
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/234 (55%), Positives = 164/234 (70%), Gaps = 15/234 (6%)
Query: 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGA 136
GE +T+W+GDL +WMDE YLN+ FA E +V+VKVIRNK G EGYGF+EF S A
Sbjct: 98 GENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Query: 137 ERVLQTFNGTPMPNGEQNFRLNWASFGAGEKR--DDTPDHTIFVGDLAADVTDYMLQETF 194
++VL+ FNGT MPN +Q FRLNWASF GEKR ++ PD +IFVGDL+ DV+D +L ETF
Sbjct: 158 DKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+YPS K AKVV+D TGR+KGYGFVRFGDE+E+ +AMTEMNGV CS+R MRIGPAT +
Sbjct: 218 SEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPR 277
Query: 255 KTVSGQQQYPKASYQ-NSQVAQSDDDPNNTTV------STVVIFNIKNPVFQTF 301
KT QQQ Y N + + + D NTT+ S+V ++K P F F
Sbjct: 278 KTNGYQQQ---GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQP-FNEF 327
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL + + L+ F+ V A KV+ + TG+ +GYGF+ F + +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 142 TFNGTPMP--------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTD 187
NG NG Q + D + TIFVG L + VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L++ F + G V + G KG GFV+F + A+ ++NG + +R
Sbjct: 318 EDLKQPF-----NEFGEIVSVKIPVG--KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 370
Query: 248 IGPATN 253
+ N
Sbjct: 371 LSWGRN 376
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 121/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 120/178 (67%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+ ++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D+ TG +KGYGFV+F DE EQ RA+TE G V ++P+R+ A K +
Sbjct: 122 SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 7/178 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+LW+GDL+ +MDE +++ FA GE V++VK+IRN+ TG GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 142 TFNGTPMPNG--EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP 199
NG P+P + F+LN+A++G ++ D++P++++FVGDL DV D ML E F YP
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMRIGPATNKKT 256
S +G KVV+D TG +KGYGFV+F DE EQ RA+TE G V +P+R+ A K +
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVL 140
TLW+GDL+ WMD T++ +A E V VKV+R+K + + Y F++F S A AER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDD----TPDHTIFVGDLAADVTDYMLQETFRA 196
+N T +P F+LNWA+ G G + ++ P+ +IFVGDL D L TFR+
Sbjct: 146 MKYNNTMIPGAHCTFKLNWAT-GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 197 RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
YPS AK+++D +TG ++ YGFVRF E EQ A+ M G C RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 257 VS 258
S
Sbjct: 265 AS 266
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L CF G ++ +K+ K G GF+++ ++ AE+ + T
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEKAINT 351
Query: 143 FNGTPMPNGEQNFRLNW 159
G + G + RL W
Sbjct: 352 MQGALV--GTSHIRLAW 366
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 39/239 (16%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
++++GDL +++ L F + K+I + TG YGF+ F S + L
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 142 TFNGTPMPNGEQNFRL----NWASFGAGEKRDDTP------------------DHTIFVG 179
G + + AS A P + T+FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239
LA+++++ LQ F+ P + + I KG GFV++ ++S +A+ M G
Sbjct: 303 GLASNLSEKDLQVCFQ---PFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 240 FCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIFNIKNPVF 298
T +R+ G P ++ SQ +Q D+ + T+S IF + V
Sbjct: 356 LVGTSHIRLA--------WGHNTLPVSALSQSQ-SQVSDEGFDRTLSANQIFGMNQSVI 405
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
TLW+G+L+ W+ E ++ + G+ V VK+IRN+ TG GY F+EF S A + +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQETFRARYPS 200
N P+P F+LNWAS G ++ +++IFVGDL+ +V ++ + F +RY S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
K AK++ D T ++GYGFVRF DE++Q A+ EM G C RP+R+G AT K
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L ++ E L F + GE+V VK+ K G GF++F++R AE +
Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQFVNRQSAEIAINQ 357
Query: 143 FNGTPMPNGEQNFRLNWA 160
G P+ G RL+W
Sbjct: 358 LQGYPL--GNSRIRLSWG 373
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 148 MPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV 207
M + E N +++G+ + T+++G+L VT+ +Q+ + + K K++
Sbjct: 67 MASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVK-VKLI 125
Query: 208 IDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237
+R TG GY FV F E AM+ N
Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSAMSMNN 155
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 109/178 (61%), Gaps = 7/178 (3%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+GDL +MDE ++ F+ GE VK+I ++ TG GY F+E A +R
Sbjct: 5 MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
+Q NG +P + F+LN+A++G ++ + P+ ++FVGDL ++V DY L + F +
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYG--KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKK 122
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNK 254
+PS KGAKVV D G ++GYGFV+F DE+EQ +A+ E N +P+RI A NK
Sbjct: 123 FPSCKGAKVVTDPY-GNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
+ +LW+G+L+ +MDE ++ FA GE VV +++IR+K TG+ GYGF+E ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 140 LQTFNGTPMPNGE--QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
L+ NG P+P + F+L+ +++G K+ ++ ++FV DL DV D ML E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG---KQGESSTFSLFVSDLTPDVDDGMLYEFFHYH 117
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT---N 253
+ S K+V+D G +K GFV F E EQ RA+ ++ G + +R+ A+ N
Sbjct: 118 FSSCCSGKIVLDA-NGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSRVN 176
Query: 254 KKTVSGQQQ 262
KK S + Q
Sbjct: 177 KKKESSENQ 185
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 20/203 (9%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQ----------IEGYGFIEFIS 132
L++GDL D+ + +A GE + V+++ N +GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 133 RAGAERVLQTFNGTPMPNG-EQNFRLNWASFGAGEKR------DDTPDHTIFVGDLAADV 185
A L NG +PN + +LNWA+ + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245
T+ L E F RY ST AK+V D++TG +KGYGFV+F + EQ A++EM GVF + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 246 MRIGPATN-KKTVSGQQQYPKAS 267
+++GP + ++ VSG Y ++S
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSS 257
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T++IG L + E L F G +V VK+ K G F++++ R AE +
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG------FVQYVDRLSAEAAIAG 367
Query: 143 FNGTPMPNGEQNFRLNWA 160
G P+ N RL+W
Sbjct: 368 MQGFPIANSR--VRLSWG 383
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 110/239 (46%), Gaps = 70/239 (29%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ----------------------- 118
RTLW+GDL DE + ++ + V VK+IR K+
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 119 -------TGQIE-----------------------GYGFIEFISRAGAERVLQTFNGTPM 148
T Q++ GY F+EF ++ A+ L + N TP+
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 149 PNG-------------EQNFRLNWASFGAGEKRD--DTPDHTIFVGDLAADVTDYMLQET 193
PN ++ FRLNWAS GA + TP+ ++FVGDL+ T+ L
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWAS-GATLQSSIPSTPEFSLFVGDLSPTATEADLLSL 211
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F+ R+ S K +V+ D LTG ++ +GFVRFGDE E+ RA+ EM+G + R +R+ AT
Sbjct: 212 FQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYAT 270
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAG 135
G+ R L++G+L + E L F G + +K++ +K + Y F+E+
Sbjct: 69 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN-YAFVEYHQSHD 127
Query: 136 AERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
A LQT NG + N ++NWA DDT +FVGDL +V D L+ F+
Sbjct: 128 ANIALQTLNGKQIENNI--VKINWAFQSQQSSSDDT--FNLFVGDLNVNVDDETLRNAFK 183
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
+PS V+ D TG ++GYGFV F + + AM M G + RP+RI A +
Sbjct: 184 -DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 105/203 (51%), Gaps = 9/203 (4%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + + ++ L F G VV V+V R+ T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N P+ + R+ ++ +R + IF+ +L + L +TF + + +
Sbjct: 97 LNYIPLYG--KPIRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTF-SSFGNIV 151
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK---TVSG 259
KV +D +G++KGYGFV++ +E +A+ ++NG+ + + + +GP ++ + +
Sbjct: 152 SCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN 210
Query: 260 QQQYPKASYQNSQVAQSDDDPNN 282
+ ++ +N + +DDD N
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKN 233
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++ +L + L F G++ + V+++ + G+ +G+GF+ F + A R +++
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 144 NGTPMPNGE-------------QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML 190
NG + E R+ + E D ++V +L ++D L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQ-NLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+E F + + + +KV+ D G +KG GFV F E AM++++G ++P+ +
Sbjct: 335 KEIF-SPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 251 ATNKK 255
A K+
Sbjct: 393 AQRKE 397
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+N AS A K D IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
K++ D TG +KGY F+ F A+ MNG + RP+ + A K +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 115/238 (48%), Gaps = 12/238 (5%)
Query: 58 TQAAAPQAAGVAVPPQQQGQPGEIRT------LWIGDLQYWMDETYLNTCFAHTGEVVAV 111
T+ A Q +++ +Q+G E ++ L++GDL + E +L F+ G V ++
Sbjct: 5 TEKTAEQLENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSI 64
Query: 112 KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDT 171
+V R+ T GY ++ F A+ ++ N TP+ + R+ W+ ++
Sbjct: 65 RVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKG--KLCRIMWSQRDPSLRKKGA 122
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
+ IF+ +L D+ + L +TF + + +KV D TG++KG+G+V F ++
Sbjct: 123 GN--IFIKNLHPDIDNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASE 178
Query: 232 AMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVV 289
A+ +NG+ + + + +GP +KK + + KA++ N + + + + +V
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELV 236
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 17/191 (8%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I ++ + A G+ +V V+ G+ +G+GF+ F++ A + ++
Sbjct: 217 NVYIKNINTETTDKEFEELVAKFGKTDSV-VLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 143 FNGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N T +Q + + + EK +F+ +L + D
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRM-EKMAKYQGINLFIKNLDDSIDDKK 334
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+E F A Y + AKV+ G++KG+GFV F E +A+TE N + +P+ +
Sbjct: 335 LEEEF-APYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 250 PATNKKTVSGQ 260
A K Q
Sbjct: 393 IAQRKDVRRSQ 403
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+N AS A K D IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
K++ D TG +KGY F+ F A+ MNG + RP+ + A K +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 5/174 (2%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T+++G L + E L F G VV + +++ TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N + + R+N AS A K D IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDV-GANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256
K++ D TG +KGY F+ F A+ MNG + RP+ + A K +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
+T D IF GDL +V D +L F +RYPS AKVV D+ TG+TKGYGFV F D ++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAF-SRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDY 357
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 358 VRAMREMNGRYVGSRPIKL 376
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KV+R+K+TG+ +GYGF+ F R ++
Sbjct: 305 IFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREM 364
Query: 144 NG 145
NG
Sbjct: 365 NG 366
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 73 QQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS 132
+ GQP RTL++G+L + E + F+ G + K+I + + Y F+EF
Sbjct: 3 EDDGQP---RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYE 57
Query: 133 RAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQE 192
A L NG + E ++NWA+ + +K+D + +FVGDL+ ++T ++
Sbjct: 58 HRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKS 115
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + A+VV D TG++KGYGFV F ++ + A+ M G + R +R AT
Sbjct: 116 AF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 253 NK 254
K
Sbjct: 175 RK 176
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 71 PPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEF 130
P Q+ +++GDL + + + FA G++ +V+++ TG+ +GYGF+ F
Sbjct: 86 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
Query: 131 ISRAGAERVLQTFNGTPMPNGEQNFRLNWAS------------------FGAGEKRDDTP 172
++ AE + G + G + R NWA+ F +
Sbjct: 146 YNKLDAENAIVHMGGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK 203
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
+ T++ G +A+ +TD ++++TF S G + I KGY FVRF A
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTF-----SPFGQIMEIRVFP--EKGYSFVRFSTHESAAHA 256
Query: 233 MTEMNG 238
+ +NG
Sbjct: 257 IVSVNG 262
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 138 RVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
R ++T GT + E L W ++ D IF GDL +V D +L F +R
Sbjct: 270 RCIRTAAGT---SWEDQSLLEW----------ESDDFRIFCGDLGNEVNDDILARAF-SR 315
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
YPS AKV+ D+ TG+TKGYGFV F D ++ +RAM EMNG + +RP+++
Sbjct: 316 YPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKL 366
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KVIR+K+TG+ +GYGF+ F R ++
Sbjct: 295 IFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREM 354
Query: 144 NG 145
NG
Sbjct: 355 NG 356
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 99/188 (52%), Gaps = 18/188 (9%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ ++I +L +D L F+ G +++ KV+ ++ + GYGF+ F ++ A R +
Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAI 155
Query: 141 QTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQE 192
QT NG + N + F ++ S +R+ ++ +++ + D+ D L+E
Sbjct: 156 QTMNGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 193 TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252
F A + +T KV++D TGR++G+GFV +G+ E +A++EMNG + R + +G A
Sbjct: 210 IFSA-FGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 253 NKKTVSGQ 260
+ G+
Sbjct: 268 KRIERQGE 275
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L++GDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
T N G P+ R+ W+ G ++ + +F+ +L + + L +TF
Sbjct: 70 DTMNFEVIKGRPI-------RIMWSQRDPGLRKSGVGN--VFIKNLDESIDNKALYDTFS 120
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + + KVV D R GYGFV F + RA+ MNG+ + R + +G +++
Sbjct: 121 A-FGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + TG+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG E N R+ + G +KR + ++V +
Sbjct: 248 VSEMNGK-----EVNGRMIYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + Y + AKV+ + G +KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
ST+P+ + A K+
Sbjct: 358 VSTKPLYVALAQRKE 372
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D T R+ GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFEVIKGRPIRI 84
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KVIR+K+TG+ +GYGF+ F + R ++
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 436
Query: 144 NG 145
NG
Sbjct: 437 NG 438
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KVIR+K+TG+ +GYGF+ F + R ++
Sbjct: 377 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 436
Query: 144 NG 145
NG
Sbjct: 437 NG 438
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KVIR+K+TG+ +GYGF+ F + R ++
Sbjct: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
Query: 144 NG 145
NG
Sbjct: 443 NG 444
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL+ + E +L F+ G V +++V R+ T GY ++ F + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK 202
N TP+ + R+ W+ ++ + + IF+ +L D+ + L +TF +
Sbjct: 99 LNYTPIKG--RLCRIMWSQRDPSLRKKGSGN--IFIKNLHPDIDNKALYDTFSV-FGDIL 153
Query: 203 GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQ 262
+K+ D G++KG+GFV F +E A+ +NG+ + + + + P ++K Q +
Sbjct: 154 SSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 263 YPKASYQNSQV 273
KA Y N V
Sbjct: 213 ETKAHYTNLYV 223
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
L++ ++ + FA G +V+ + ++ G+++G+GF+ + A + ++
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEA 278
Query: 143 FNGTPMPNGEQ---------NFRLN-----WASFGAGEKRDDTPDHTIFVGDLAADVTDY 188
N + + NGE+ N R++ + ++ EK +FV +L V D
Sbjct: 279 LNDSEL-NGEKLYVGRAQKKNERMHVLKKQYEAYRL-EKMAKYQGVNLFVKNLDDSVDDE 336
Query: 189 MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248
L+E F A Y + AKV+ G++KG+GFV F E +A+TE N + +P+ +
Sbjct: 337 KLEEEF-APYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 249 GPATNKKTVSGQ 260
A K Q
Sbjct: 395 AIAQRKDVRRSQ 406
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229
D D IF GDL +V D +L F +R+PS AKV+ D+ TG+TKGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAF-SRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 230 LRAMTEMNGVFCSTRPMRI 248
+RAM EMNG + +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
++ GDL +++ L F+ + KVIR+K+TG+ +GYGF+ F + R ++
Sbjct: 351 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 410
Query: 144 NG 145
NG
Sbjct: 411 NG 412
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 18/186 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L F+ G++++ KV+ ++ + GYGF+ F ++ A R +QT
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQT 157
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N + F ++ S +R+ ++ +++ + D+ D L+E F
Sbjct: 158 MNGMLL-NDRKVFVGHFKS-----RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIF 211
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A + +T KV++D +GR++G+GFV +G+ E +A+TEMNG + R + +G A +
Sbjct: 212 SA-FGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269
Query: 255 KTVSGQ 260
G+
Sbjct: 270 IERQGE 275
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140
+ +L+IGDL + E L F+ G +++++V R+ T + GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 141 QTFN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195
T N G P+ R+ W+ G ++ + +F+ +L + + L +TF
Sbjct: 70 DTMNFEVIKGRPI-------RIMWSQRDPGLRKSGVGN--VFIKNLDDSIDNKALYDTFS 120
Query: 196 ARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255
A + KVV D R GYGFV F + RA+ MNG+ + R + +G +++
Sbjct: 121 A-FGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + MD+ L F+ G ++VKV+ + +G+ G+GF+ + + A++
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG E N R+ + G +KR + ++V +
Sbjct: 248 VTEMNGK-----EVNGRMVYV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + Y + KV+ + G +KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDDRLRKEF-SPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
ST+P+ + A K+
Sbjct: 358 VSTKPLYVALAQRKE 372
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
R + P ++++GDL DVT+ ML E F P +V D T R+ GY ++ F +
Sbjct: 5 RAEYPLASLYIGDLHPDVTEAMLYEKFSPAGP-IMSIRVCRDIATRRSLGYAYINFQQPA 63
Query: 228 EQLRAMTEMNGVFCSTRPMRI 248
+ RA+ MN RP+RI
Sbjct: 64 DAERALDTMNFEVIKGRPIRI 84
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 6/222 (2%)
Query: 36 QPSPYMMMMPPQPQAQPPAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDE 95
Q ++ + + W ++ GV Q +P E L++G+L Y +D
Sbjct: 10 QEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVE-GGQGFSEPPEEAKLFVGNLPYDVDS 68
Query: 96 TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155
L F G V +VI N++T + G+GF+ + AE+ ++ NG M +G Q
Sbjct: 69 EKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDM-DGRQLT 127
Query: 156 RLNWASFGAGEKR---DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212
A G+ E+ D P ++VG+L DV L++ F + + A+VV DR T
Sbjct: 128 VNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLF-SEHGKVVSARVVSDRET 186
Query: 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
GR++G+GFV ESE A+ ++G R +R+ A +
Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L + +D L F G V V+VI +K TG+ G+GF+ ++ E Q F
Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148
Query: 144 NG------------TPMPNGEQNF-----RLNWASFGAGEK-----------RDDTPDHT 175
NG P P +N R +S+G G R +
Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNR 208
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++VG+L+ V D L+E F + + AKVV DR +GR++G+GFV + E A+
Sbjct: 209 VYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NGV R +R+ A +
Sbjct: 268 LNGVDLDGRSIRVSAAEER 286
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L++GDL + E L F+ G +++++V R+ T + GY ++ F A AER L T
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 143 FN-----GTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRAR 197
N G P+ R+ W+ ++ + IF+ +L + + L +TF A
Sbjct: 72 MNFDVIKGRPV-------RIMWSQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSA- 121
Query: 198 YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+ + KVV D +KGYGFV F + RA+ +MNG+ + R + +G ++K
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 258 SGQQQYPKASYQNSQVAQSDDDPNNTTVSTV 288
+ + N + DD N+ + +
Sbjct: 180 EAELGARAKEFTNVYIKNFGDDMNDERLKEM 210
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERV 139
E ++I + M++ L F G ++VKV+ + G+ +G+GF+ F A++
Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKA 247
Query: 140 LQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGD 180
+ NG M NG+ F G +K+ + ++V +
Sbjct: 248 VDEMNGKDM-NGKSMF------VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 300
Query: 181 LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240
L + D L++ F + + AKV+++ GR+KG+GFV F E +A+TEMNG
Sbjct: 301 LDDGIDDERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 241 CSTRPMRIGPATNKK 255
+T+P+ + A K+
Sbjct: 358 VATKPLYVALAQRKE 372
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231
P +++VGDL DVT+ ML E F P +V D +T R+ GY +V F ++ R
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 232 AMTEMNGVFCSTRPMRI 248
A+ MN RP+RI
Sbjct: 68 ALDTMNFDVIKGRPVRI 84
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 13/199 (6%)
Query: 63 PQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQI 122
P G A ++ +P E L++G+L Y +D L F G V +VI N++T +
Sbjct: 78 PSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRS 137
Query: 123 EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA--GEK-----RDDTPDHT 175
G+GF+ + A++ ++ ++ + N RL + A G + R P +
Sbjct: 138 RGFGFVTMSTVEEADKAVELYSQYDL-----NGRLLTVNKAAPRGSRPERAPRTFQPTYR 192
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
I+VG++ D+ D L++ F + + A+VV DR +GR++G+GFV E+E A+
Sbjct: 193 IYVGNIPWDIDDARLEQVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 236 MNGVFCSTRPMRIGPATNK 254
++G R +R+ A +
Sbjct: 252 LDGQTLDGRTIRVNAAEER 270
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 18/189 (9%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L + M + L+ FA G V V+++ ++ T + G+ F+ S A+ ++ F
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 144 NGTPMPNGEQNFRLNWASFGAGEKRD--------------DTPDHTIFVGDLAADVTDYM 189
+G+ + G + ++N+ G +R+ D+P H ++V +L+ +T
Sbjct: 176 DGSQV--GGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSP-HKLYVANLSWALTSQG 232
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L++ F A P AKV+ DR +GR++G+GF+ F A+ MN V RP+R+
Sbjct: 233 LRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291
Query: 250 PATNKKTVS 258
A K VS
Sbjct: 292 VAGQKAPVS 300
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 108/225 (48%), Gaps = 15/225 (6%)
Query: 57 ATQAAAPQAAGVAVPPQQQGQPGEIR----TLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
AT ++ P A ++QG+ I +L++G+L ++E L F+ G+V +++
Sbjct: 43 ATSSSVP-----ADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIR 97
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTP 172
V R+ + + GY ++ + E+ ++ N TP+ + R+ W+ +R +
Sbjct: 98 VCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEG--RPCRIMWSQRDPSARR--SG 153
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D IF+ +L + + L +TF A + KV D L G++K +GFV + E A
Sbjct: 154 DGNIFIKNLHPAIDNKALHDTFSA-FGKILSVKVATDDL-GQSKCFGFVHYETEEAAQAA 211
Query: 233 MTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSD 277
+ +NG+ + R + +G +KK + + KA+Y N V D
Sbjct: 212 IESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNID 256
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ ++ E FA G++ ++ + ++ + G+ +G+GF+ F A + ++
Sbjct: 249 NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEE 307
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH-------------------TIFVGDLAA 183
N + NG++ + G +K+ + + +FV +L
Sbjct: 308 LNDKEI-NGQKIY------VGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDE 360
Query: 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243
+ L+E F+ + + +KV++D G++KG+GFV F E +A+TEMN +
Sbjct: 361 QIDSEKLEEEFKP-FGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNG 418
Query: 244 RPMRIGPATNKKTVSGQ 260
+P+ + A K Q
Sbjct: 419 KPLYVALAQRKDVRRSQ 435
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 9/186 (4%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ F+ G++++VKV + GQ + +GF+ + + A+ +++
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIES 214
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + E + + K ++ + I+V ++ T+ +E F P
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFA---PF 271
Query: 201 TKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK--KTV 257
K + +++ G++KG+GFV F + +A+ E+N + + + +G A K +T
Sbjct: 272 GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTE 331
Query: 258 SGQQQY 263
++QY
Sbjct: 332 ELKKQY 337
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 53 PAMWATQAAAPQAAGVAVPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK 112
P + A ++A+P A A P +L++G+L + E L F+ G+V +++
Sbjct: 30 PEVTAVESASPSATPSANQPHSA-------SLYVGELDPSVTEAMLYELFSSIGQVASIR 82
Query: 113 VIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRD--- 169
V R+ T + GY ++ + + A ER L+ N T + + R+ W+ +RD
Sbjct: 83 VCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWS------QRDPAL 134
Query: 170 -DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228
T +F+ +L A + + L +TF A + + KV D G +KGYGFV +
Sbjct: 135 RKTGQGNVFIKNLDAAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAEA 192
Query: 229 QLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDD 279
A+ +NG+ + + + +G +KK + + KA++ N + D +
Sbjct: 193 ANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQE 243
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 199
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--------TIFVGDLAADVTDYMLQETF 194
NG + N ++ F + S K+D +++ ++ +VTD ++ F
Sbjct: 200 VNGMLL-NDKKVFVGHHIS-----KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMF 253
Query: 195 RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
++ A + D+ G+++G+GFV F A+ EMN + + +G A K
Sbjct: 254 E-KFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 60/229 (26%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I ++ + + F GE+ + + R+ Q G+ G+GF+ F + A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 143 FN-----GTPMPNG--------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
N G + G E+ R + + EK ++V +L DV D
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 190 LQETFRARYPSTKGAKVVIDRLT------------------------------------- 212
L+E F + + + AKV+ D +T
Sbjct: 352 LRELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAK 410
Query: 213 -------GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 411 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 459
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232
D IF GDL +V D +L F +RYPS AKV+ D+ TG+TKGYGFV F D ++ +RA
Sbjct: 292 DFRIFCGDLGNEVNDDILARAF-SRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 233 MTEMNGVFCSTRPMRI 248
EMNG + +RP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 25/200 (12%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+L+ GDL + E +L F H VV+V+V R++ + GY +I F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSL-GYAYINFSNPNDAYRAMEA 108
Query: 143 FNGTPM---------PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQET 193
N TP+ N + + RL+ G G IF+ +L A + + L ET
Sbjct: 109 LNYTPLFDRPIRIMLSNRDPSTRLS----GKG---------NIFIKNLDASIDNKALFET 155
Query: 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253
F + + + KV +D +TGR+KGYGFV+F E A+ ++NG+ + + + +G
Sbjct: 156 FSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 254 KKTVSGQQQYPKASYQNSQV 273
++ + + P + N V
Sbjct: 214 RQERARDENTPTPRFTNVYV 233
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
+++ +L + E L F G V++ V+ Q+G +GF+ F A ++
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 143 FNGTPMPNG-------------EQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
NG + + E+ R + + + + +++ +L V D
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI-NRFEKSQGANLYLKNLDDSVDDEK 347
Query: 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249
L+E F + Y + +KV+++ G ++G+GFV + + E LRA++EMNG +P+ I
Sbjct: 348 LKEMF-SEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 250 PATNKK 255
A K+
Sbjct: 406 LAQRKE 411
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 28/221 (12%)
Query: 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141
+TL++G+L + E + F+ G K+I + T + Y F+EF A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 142 TFNGTPMPNGEQNFRLNWASFGAGEKRDDTP----------DH-TIFVGDLAADVTDYML 190
NG + E ++NWA+ + +K+D + DH +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250
+ F A + A+VV D TG++KGYGFV F ++ + A+ +M G + R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 251 ATNKKTVSGQQQYPKASYQNSQVAQSDDD------PNNTTV 285
AT K PK++Y+++ S D+ PNN TV
Sbjct: 182 ATRKPPA------PKSTYESNTKQLSYDEVVSQSSPNNCTV 216
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++GDL + + FA G + +V+++ TG+ +GYGF+ F ++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 144 NGTPMPNGEQNFRLNWA------------------SFGAGEKRDDTPDHTIFVGDLAADV 185
G + G + R NWA S+ + + T++ G + + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238
T+ ++++TF + + +V D KGY FVRF A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
D+ P T++VG+L+ DVT+ ++ + F P K K+++D T Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHR 57
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPAT 252
A+ MNG + +++ AT
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWAT 82
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
T++ G + + E + F+ G+++ ++V +K GY F+ F S A + +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAAHAIVS 268
Query: 143 FNGTPM 148
NGT +
Sbjct: 269 VNGTTI 274
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
L++G+L + +D L F G V V+VI +K +G+ G+GF+ ++ E Q F
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 144 NG------------TPMPNGEQNF-----RLNWASFGAGEK-----------RDDTPDHT 175
NG P P +N R +S+G G R +
Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNR 209
Query: 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235
++VG+L+ V D L+E F + + AKVV DR +GR++G+GFV + E A+
Sbjct: 210 VYVGNLSWGVDDLALKELF-SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query: 236 MNGVFCSTRPMRIGPATNK 254
+NG+ R +R+ A +
Sbjct: 269 LNGIDLDGRSIRVSAAEER 287
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 52 PPAMWATQAAAPQAAGVA----VPPQQQGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE 107
P A A +AP+ V P QP +L++G+L + E L F+ G+
Sbjct: 18 PEATNAAATSAPEVTAVESSSPTSPNNNNQPHSA-SLYVGELDPSVTEAMLYELFSSIGQ 76
Query: 108 VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEK 167
V +++V R+ T + GY ++ + + A ER L+ N T + + R+ W+ +
Sbjct: 77 VASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG--KPCRIMWSQRDPALR 134
Query: 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227
+ T +F+ +L + + + L +TF A + + KV D G +KGYGFV +
Sbjct: 135 K--TGQGNVFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDEF-GNSKGYGFVHYETAE 190
Query: 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDD 279
A+ +NG+ + + + +G +KK + KA++ N + D D
Sbjct: 191 AANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPD 242
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I +L +D L+ FA G +++ KV ++ + G +GYGF+ + + A ++
Sbjct: 140 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKH 198
Query: 143 FNGTPMPNGEQNFRLNWASFGAGEKRDDTPDH--TIFVGDLAADVTDYMLQETFRARYPS 200
NG + + + + + K D+ + I++ ++ DVT+ ++ F ++
Sbjct: 199 VNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFE-QFGE 257
Query: 201 TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254
A + D G+++G+GFV + A+ EM+ T+ + +G A K
Sbjct: 258 ITSATLSRDP-EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKK 310
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 68/243 (27%)
Query: 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142
++I ++ + E F GE+ + + R+ + G+ G+GF+ + + A+ +
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDE 291
Query: 143 FNGTPMP-------------NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYM 189
+ + E+ R + + EK ++V +L DV D
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEA-ARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 190 LQETFRARYPSTKGAKVVID---------------------------------------- 209
L+E F Y + AKV+ D
Sbjct: 351 LRELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 210 ------------RLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257
+L G++KG+GFV F E +A+TEMN + +P+ + A K
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 469
Query: 258 SGQ 260
Q
Sbjct: 470 RSQ 472
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143
+++G+L + D L F G V V+VI +K TG+ G+GF+ S+ E Q F
Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 144 NGTPMPNGEQNFRLNWASFGAG---EKRDD-------------TPDHTIFVGDLAADVTD 187
NG + + R+N +G EKR++ + ++VG+LA V
Sbjct: 149 NGYELDG--RALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 201
Query: 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247
L ET + AKVV DR +GR++G+GFV + E A+ ++GV + R +R
Sbjct: 202 DAL-ETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260
Query: 248 IGPA 251
+ PA
Sbjct: 261 VSPA 264
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVR 222
G E+R+ +PD IFVG+L L E F R + + +V+ D+LTGR++G+GFV
Sbjct: 76 GVEEERNFSPDLKIFVGNLPFSADSAALAELFE-RAGNVEMVEVIYDKLTGRSRGFGFVT 134
Query: 223 FGDESEQLRAMTEMNGVFCSTRPMRI 248
+ E A + NG R +R+
Sbjct: 135 MSSKEEVEAACQQFNGYELDGRALRV 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,930,254
Number of Sequences: 539616
Number of extensions: 5881767
Number of successful extensions: 84236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 1572
Number of HSP's that attempted gapping in prelim test: 42453
Number of HSP's gapped (non-prelim): 22882
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)