Query 022077
Match_columns 303
No_of_seqs 292 out of 2744
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 6.9E-36 1.5E-40 260.3 22.4 174 77-257 103-278 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-34 3.5E-39 256.9 23.1 169 80-255 2-172 (352)
3 KOG0148 Apoptosis-promoting RN 100.0 8.9E-35 1.9E-39 232.5 17.6 171 79-258 60-242 (321)
4 TIGR01645 half-pint poly-U bin 100.0 6.3E-34 1.4E-38 260.2 21.2 176 79-257 105-287 (612)
5 TIGR01628 PABP-1234 polyadenyl 100.0 7.5E-34 1.6E-38 266.8 21.6 197 83-302 2-200 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-32 3.8E-37 243.8 23.8 176 80-256 88-351 (352)
7 KOG0144 RNA-binding protein CU 100.0 4.7E-33 1E-37 235.8 15.8 179 78-261 31-213 (510)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-31 2.5E-36 245.2 21.0 195 78-302 55-255 (578)
9 KOG0148 Apoptosis-promoting RN 100.0 1.5E-32 3.2E-37 219.8 12.6 181 78-302 3-186 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-31 4.1E-36 250.6 19.7 213 80-301 87-306 (562)
11 KOG0117 Heterogeneous nuclear 100.0 7.2E-31 1.6E-35 223.5 18.9 194 79-301 81-280 (506)
12 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-30 5.8E-35 237.4 21.9 172 78-253 86-265 (457)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.6E-30 1.4E-34 234.7 22.9 162 81-255 2-175 (481)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-29 4.5E-34 231.4 24.7 212 80-301 95-415 (481)
15 KOG0131 Splicing factor 3b, su 100.0 2E-30 4.4E-35 196.1 12.8 175 78-258 6-181 (203)
16 KOG0145 RNA-binding protein EL 100.0 8.5E-30 1.9E-34 202.9 16.4 172 78-256 38-211 (360)
17 TIGR01648 hnRNP-R-Q heterogene 100.0 4.6E-29 1E-33 228.1 21.2 215 79-302 136-363 (578)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.3E-28 9.3E-33 225.8 25.3 170 76-255 170-376 (509)
19 KOG0145 RNA-binding protein EL 100.0 8.5E-28 1.8E-32 191.6 16.4 176 78-254 124-358 (360)
20 KOG0117 Heterogeneous nuclear 100.0 4.6E-28 1E-32 206.5 15.8 173 78-259 161-336 (506)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1E-26 2.2E-31 216.6 21.8 173 79-254 293-502 (509)
22 KOG0146 RNA-binding protein ET 99.9 6.6E-27 1.4E-31 187.2 13.0 177 79-257 17-368 (371)
23 KOG0127 Nucleolar protein fibr 99.9 1.7E-26 3.7E-31 201.3 16.0 175 81-259 5-201 (678)
24 KOG0124 Polypyrimidine tract-b 99.9 3.8E-27 8.3E-32 196.2 10.6 171 81-254 113-290 (544)
25 KOG0123 Polyadenylate-binding 99.9 3.8E-26 8.2E-31 200.2 16.6 157 82-259 2-158 (369)
26 KOG0109 RNA-binding protein LA 99.9 7.9E-27 1.7E-31 188.9 10.5 150 82-256 3-152 (346)
27 KOG0127 Nucleolar protein fibr 99.9 8.2E-26 1.8E-30 197.1 17.2 174 81-258 117-382 (678)
28 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-24 4.5E-29 198.4 20.9 167 81-254 186-448 (457)
29 KOG0144 RNA-binding protein CU 99.9 9.9E-25 2.1E-29 185.4 12.3 176 80-257 123-507 (510)
30 KOG4205 RNA-binding protein mu 99.9 1.4E-23 3.1E-28 177.8 12.5 177 79-260 4-182 (311)
31 KOG0147 Transcriptional coacti 99.9 2.4E-23 5.2E-28 182.4 7.4 178 77-258 175-362 (549)
32 KOG0110 RNA-binding protein (R 99.9 2.1E-22 4.5E-27 181.2 12.9 172 82-256 516-695 (725)
33 KOG0123 Polyadenylate-binding 99.9 4.1E-22 8.9E-27 174.9 13.8 208 83-301 78-291 (369)
34 TIGR01645 half-pint poly-U bin 99.9 1E-20 2.2E-25 173.8 21.0 79 80-160 203-281 (612)
35 KOG4206 Spliceosomal protein s 99.8 1.7E-19 3.7E-24 142.4 16.2 161 81-252 9-220 (221)
36 TIGR01659 sex-lethal sex-letha 99.8 2.1E-20 4.6E-25 163.3 11.9 112 168-302 102-215 (346)
37 KOG1457 RNA binding protein (c 99.8 1.8E-18 3.8E-23 135.6 15.7 162 75-241 28-273 (284)
38 PLN03134 glycine-rich RNA-bind 99.8 6E-19 1.3E-23 135.4 11.7 87 170-257 31-117 (144)
39 KOG0147 Transcriptional coacti 99.8 1.2E-18 2.7E-23 153.1 12.1 166 82-255 279-529 (549)
40 KOG4211 Splicing factor hnRNP- 99.8 7.2E-18 1.6E-22 146.4 16.1 166 79-253 8-181 (510)
41 KOG0110 RNA-binding protein (R 99.8 3E-18 6.5E-23 154.6 13.2 201 79-301 383-634 (725)
42 KOG1548 Transcription elongati 99.8 3.9E-17 8.5E-22 135.9 17.4 173 78-258 131-356 (382)
43 KOG0105 Alternative splicing f 99.7 5.9E-17 1.3E-21 123.5 14.5 151 79-242 4-176 (241)
44 KOG1190 Polypyrimidine tract-b 99.7 1.1E-16 2.3E-21 135.9 16.9 213 79-302 148-436 (492)
45 PLN03134 glycine-rich RNA-bind 99.7 2.6E-17 5.5E-22 126.3 11.4 84 78-163 31-114 (144)
46 KOG4212 RNA-binding protein hn 99.7 6.3E-16 1.4E-20 132.3 16.4 174 79-257 42-297 (608)
47 KOG0106 Alternative splicing f 99.7 3.4E-17 7.3E-22 130.8 7.4 151 82-251 2-168 (216)
48 KOG1190 Polypyrimidine tract-b 99.7 5.4E-16 1.2E-20 131.7 14.8 161 81-253 297-490 (492)
49 PF00076 RRM_1: RNA recognitio 99.7 2.1E-16 4.6E-21 106.5 9.8 70 176-247 1-70 (70)
50 KOG0122 Translation initiation 99.7 1.6E-16 3.6E-21 126.4 9.8 84 170-254 186-269 (270)
51 KOG0124 Polypyrimidine tract-b 99.7 2.6E-15 5.5E-20 126.0 15.3 170 78-250 207-531 (544)
52 KOG0125 Ataxin 2-binding prote 99.7 3.3E-16 7.2E-21 129.5 9.0 86 168-256 91-176 (376)
53 KOG0149 Predicted RNA-binding 99.6 3.3E-16 7.2E-21 124.2 6.7 82 170-253 9-90 (247)
54 KOG0121 Nuclear cap-binding pr 99.6 6.9E-16 1.5E-20 110.6 7.5 82 78-161 33-114 (153)
55 KOG0126 Predicted RNA-binding 99.6 5.1E-17 1.1E-21 123.5 0.6 111 139-258 9-119 (219)
56 KOG0122 Translation initiation 99.6 2.1E-15 4.6E-20 120.1 9.6 84 77-162 185-268 (270)
57 KOG0120 Splicing factor U2AF, 99.6 3.6E-15 7.8E-20 133.0 12.2 176 77-255 285-493 (500)
58 KOG0129 Predicted RNA-binding 99.6 1.1E-14 2.4E-19 127.7 14.9 171 77-256 255-445 (520)
59 PF00076 RRM_1: RNA recognitio 99.6 2.6E-15 5.7E-20 101.1 8.5 70 84-156 1-70 (70)
60 PF14259 RRM_6: RNA recognitio 99.6 3.6E-15 7.9E-20 100.5 9.0 70 176-247 1-70 (70)
61 KOG0113 U1 small nuclear ribon 99.6 5.2E-15 1.1E-19 121.1 11.0 90 168-258 96-185 (335)
62 KOG0121 Nuclear cap-binding pr 99.6 2.7E-15 5.8E-20 107.6 7.4 82 171-253 34-115 (153)
63 KOG0149 Predicted RNA-binding 99.6 2.9E-15 6.3E-20 118.9 8.0 81 79-162 10-90 (247)
64 KOG0130 RNA-binding protein RB 99.6 4.6E-15 1E-19 107.4 7.4 89 169-258 68-156 (170)
65 COG0724 RNA-binding proteins ( 99.6 2.7E-14 5.8E-19 122.5 13.5 150 81-233 115-284 (306)
66 KOG0107 Alternative splicing f 99.6 6.4E-15 1.4E-19 111.6 7.9 79 172-256 9-87 (195)
67 PLN03120 nucleic acid binding 99.6 1.2E-14 2.6E-19 119.4 9.9 78 173-255 4-81 (260)
68 KOG0109 RNA-binding protein LA 99.6 4.5E-15 9.8E-20 121.0 5.5 95 174-301 3-99 (346)
69 KOG0108 mRNA cleavage and poly 99.5 1.9E-14 4E-19 127.7 9.3 85 174-259 19-103 (435)
70 KOG0111 Cyclophilin-type pepti 99.5 4.5E-15 9.7E-20 116.3 4.7 90 171-261 8-97 (298)
71 KOG4207 Predicted splicing fac 99.5 1.1E-14 2.5E-19 113.0 6.7 85 171-256 11-95 (256)
72 KOG0131 Splicing factor 3b, su 99.5 1.1E-14 2.4E-19 111.0 6.4 82 170-252 6-87 (203)
73 KOG0114 Predicted RNA-binding 99.5 4.2E-14 9E-19 97.7 8.4 83 170-256 15-97 (124)
74 KOG4212 RNA-binding protein hn 99.5 3.7E-13 8E-18 115.6 15.7 75 171-251 534-608 (608)
75 PF14259 RRM_6: RNA recognitio 99.5 4E-14 8.7E-19 95.4 8.0 69 84-155 1-69 (70)
76 KOG0107 Alternative splicing f 99.5 3.6E-14 7.8E-19 107.6 7.8 79 79-164 8-86 (195)
77 KOG1456 Heterogeneous nuclear 99.5 3.6E-12 7.8E-17 107.5 19.9 171 77-254 283-491 (494)
78 PLN03213 repressor of silencin 99.5 5.7E-14 1.2E-18 122.3 9.4 80 170-254 7-88 (759)
79 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 3E-18 92.6 9.3 72 175-249 1-72 (72)
80 KOG1456 Heterogeneous nuclear 99.5 5.3E-13 1.2E-17 112.5 14.6 180 78-269 28-214 (494)
81 KOG0126 Predicted RNA-binding 99.5 1.9E-15 4.2E-20 115.0 -0.2 81 79-161 33-113 (219)
82 KOG0226 RNA-binding proteins [ 99.5 2.8E-13 6.1E-18 108.6 11.5 171 81-255 96-271 (290)
83 PLN03120 nucleic acid binding 99.5 1.5E-13 3.2E-18 112.9 10.0 75 81-161 4-78 (260)
84 smart00360 RRM RNA recognition 99.5 1.6E-13 3.4E-18 92.0 8.6 71 178-249 1-71 (71)
85 KOG0130 RNA-binding protein RB 99.5 6.7E-14 1.5E-18 101.4 6.9 84 78-163 69-152 (170)
86 KOG0125 Ataxin 2-binding prote 99.5 4.4E-13 9.5E-18 111.2 11.7 84 76-163 91-174 (376)
87 KOG1365 RNA-binding protein Fu 99.5 2.1E-13 4.7E-18 115.2 9.7 170 79-254 159-362 (508)
88 KOG0113 U1 small nuclear ribon 99.5 4.5E-13 9.9E-18 109.8 10.1 82 77-158 97-178 (335)
89 KOG0108 mRNA cleavage and poly 99.5 9.9E-14 2.1E-18 123.2 6.5 80 82-163 19-98 (435)
90 PLN03121 nucleic acid binding 99.4 6.1E-13 1.3E-17 107.6 10.0 77 172-253 4-80 (243)
91 COG0724 RNA-binding proteins ( 99.4 8.9E-13 1.9E-17 113.1 11.6 80 173-253 115-194 (306)
92 PLN03213 repressor of silencin 99.4 5.3E-13 1.1E-17 116.4 9.5 77 79-161 8-86 (759)
93 KOG0120 Splicing factor U2AF, 99.4 5.6E-13 1.2E-17 119.1 9.8 174 77-260 171-375 (500)
94 cd00590 RRM RRM (RNA recogniti 99.4 1.7E-12 3.6E-17 87.8 9.9 74 175-250 1-74 (74)
95 PF13893 RRM_5: RNA recognitio 99.4 7.7E-13 1.7E-17 84.8 7.1 56 190-251 1-56 (56)
96 PLN03121 nucleic acid binding 99.4 1.3E-12 2.7E-17 105.8 9.8 76 80-161 4-79 (243)
97 KOG4207 Predicted splicing fac 99.4 4.5E-13 9.8E-18 104.2 6.9 86 77-164 9-94 (256)
98 KOG0111 Cyclophilin-type pepti 99.4 3.1E-13 6.7E-18 106.1 5.0 86 79-166 8-93 (298)
99 KOG0114 Predicted RNA-binding 99.4 3.1E-12 6.6E-17 88.6 9.1 80 77-161 14-93 (124)
100 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.9E-17 86.2 8.9 71 83-157 1-71 (72)
101 smart00361 RRM_1 RNA recogniti 99.4 2.2E-12 4.8E-17 86.6 8.3 62 187-249 2-70 (70)
102 smart00360 RRM RNA recognition 99.4 3.8E-12 8.2E-17 85.2 8.7 70 86-157 1-70 (71)
103 KOG0105 Alternative splicing f 99.4 3.2E-12 7E-17 97.8 8.7 81 171-255 4-84 (241)
104 KOG4206 Spliceosomal protein s 99.3 5.9E-12 1.3E-16 100.0 9.4 86 171-260 7-96 (221)
105 KOG0415 Predicted peptidyl pro 99.3 2.2E-12 4.7E-17 108.1 6.5 83 170-253 236-318 (479)
106 KOG0146 RNA-binding protein ET 99.3 2.2E-12 4.9E-17 104.2 6.1 103 153-261 3-108 (371)
107 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.7E-16 82.2 9.6 74 83-159 1-74 (74)
108 KOG4205 RNA-binding protein mu 99.3 3.9E-12 8.5E-17 108.4 5.5 112 172-301 5-118 (311)
109 KOG4208 Nucleolar RNA-binding 99.3 2.8E-11 6.1E-16 94.6 8.8 85 169-254 45-130 (214)
110 KOG4211 Splicing factor hnRNP- 99.2 1.2E-10 2.6E-15 102.0 12.8 165 79-251 101-355 (510)
111 KOG4454 RNA binding protein (R 99.2 2.3E-12 4.9E-17 101.2 1.6 144 79-245 7-154 (267)
112 smart00361 RRM_1 RNA recogniti 99.2 7.2E-11 1.6E-15 79.2 7.7 61 95-157 2-69 (70)
113 KOG4210 Nuclear localization s 99.2 1.8E-11 3.8E-16 104.1 5.4 177 79-257 86-267 (285)
114 KOG1365 RNA-binding protein Fu 99.2 3.8E-11 8.3E-16 101.7 7.1 218 78-301 57-301 (508)
115 PF13893 RRM_5: RNA recognitio 99.2 7.4E-11 1.6E-15 75.5 6.9 56 98-160 1-56 (56)
116 KOG0153 Predicted RNA-binding 99.2 1.3E-10 2.9E-15 97.4 9.2 82 167-255 222-304 (377)
117 KOG0132 RNA polymerase II C-te 99.2 7.7E-11 1.7E-15 108.1 7.6 81 171-258 419-499 (894)
118 KOG0112 Large RNA-binding prot 99.2 2.7E-11 5.8E-16 112.8 4.6 168 77-260 368-537 (975)
119 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.4E-15 107.1 8.3 108 80-195 420-528 (894)
120 KOG0128 RNA-binding protein SA 99.1 4.2E-12 9.2E-17 117.5 -1.9 150 79-253 665-814 (881)
121 KOG4208 Nucleolar RNA-binding 99.1 4E-10 8.6E-15 88.2 8.0 81 79-161 47-128 (214)
122 KOG0415 Predicted peptidyl pro 99.0 3.5E-10 7.6E-15 95.1 6.1 81 80-162 238-318 (479)
123 KOG4661 Hsp27-ERE-TATA-binding 99.0 3.7E-09 7.9E-14 94.2 9.9 83 171-254 403-485 (940)
124 KOG4307 RNA binding protein RB 98.9 3.7E-08 8E-13 89.8 15.2 171 80-256 310-516 (944)
125 KOG4307 RNA binding protein RB 98.9 1.4E-08 3E-13 92.5 12.4 76 174-250 868-943 (944)
126 KOG0153 Predicted RNA-binding 98.9 5.8E-09 1.3E-13 87.7 8.7 80 76-162 223-302 (377)
127 KOG4660 Protein Mei2, essentia 98.9 2.2E-09 4.8E-14 95.6 6.5 163 77-255 71-251 (549)
128 KOG0533 RRM motif-containing p 98.9 8.5E-09 1.8E-13 84.7 8.4 84 170-255 80-163 (243)
129 KOG0226 RNA-binding proteins [ 98.8 4.7E-09 1E-13 84.6 4.8 80 79-160 188-267 (290)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 2.4E-08 5.1E-13 89.1 8.5 84 78-163 402-485 (940)
131 PF04059 RRM_2: RNA recognitio 98.8 9.4E-08 2E-12 67.4 9.8 82 174-255 2-88 (97)
132 KOG0533 RRM motif-containing p 98.8 5E-08 1.1E-12 80.2 9.1 84 77-163 79-162 (243)
133 KOG0116 RasGAP SH3 binding pro 98.8 5.4E-08 1.2E-12 86.4 9.8 83 173-257 288-370 (419)
134 KOG0106 Alternative splicing f 98.7 2.3E-08 5E-13 80.4 6.3 73 174-255 2-74 (216)
135 KOG4209 Splicing factor RNPS1, 98.7 1.9E-08 4.2E-13 82.9 5.9 85 168-254 96-180 (231)
136 KOG1457 RNA binding protein (c 98.7 9.2E-08 2E-12 75.9 9.3 84 171-255 32-119 (284)
137 KOG2193 IGF-II mRNA-binding pr 98.7 1.5E-09 3.3E-14 93.3 -0.9 158 82-257 2-160 (584)
138 KOG4660 Protein Mei2, essentia 98.7 1.6E-08 3.4E-13 90.3 4.3 73 169-247 71-143 (549)
139 KOG0151 Predicted splicing reg 98.6 8E-08 1.7E-12 87.9 7.4 83 170-253 171-256 (877)
140 PF04059 RRM_2: RNA recognitio 98.6 6.5E-07 1.4E-11 63.1 9.6 81 82-162 2-86 (97)
141 KOG4209 Splicing factor RNPS1, 98.6 1.1E-07 2.4E-12 78.4 5.6 82 77-161 97-178 (231)
142 KOG1548 Transcription elongati 98.5 3.1E-07 6.6E-12 77.5 7.6 81 172-254 133-221 (382)
143 KOG0151 Predicted splicing reg 98.5 2.2E-07 4.7E-12 85.2 6.5 81 79-161 172-255 (877)
144 KOG0116 RasGAP SH3 binding pro 98.5 1.2E-06 2.5E-11 78.1 10.0 78 80-160 287-364 (419)
145 KOG4454 RNA binding protein (R 98.5 5.7E-08 1.2E-12 76.8 1.5 80 171-253 7-86 (267)
146 PF11608 Limkain-b1: Limkain b 98.4 1.3E-06 2.9E-11 58.6 6.3 72 174-256 3-79 (90)
147 KOG4676 Splicing factor, argin 98.3 1.9E-07 4E-12 80.0 1.9 163 82-253 8-225 (479)
148 PF08777 RRM_3: RNA binding mo 98.2 2.7E-06 5.9E-11 61.4 4.9 70 174-250 2-76 (105)
149 KOG4849 mRNA cleavage factor I 98.2 4E-06 8.6E-11 70.9 5.8 75 76-150 75-151 (498)
150 KOG1855 Predicted RNA-binding 98.1 3.2E-06 6.9E-11 73.4 5.3 82 168-250 226-320 (484)
151 KOG0115 RNA-binding protein p5 98.1 1E-05 2.2E-10 65.8 7.0 89 134-237 5-93 (275)
152 KOG1995 Conserved Zn-finger pr 98.1 4.5E-06 9.7E-11 71.2 4.5 87 170-257 63-157 (351)
153 COG5175 MOT2 Transcriptional r 98.0 1.7E-05 3.7E-10 66.9 6.9 83 171-254 112-203 (480)
154 KOG1995 Conserved Zn-finger pr 98.0 7.9E-06 1.7E-10 69.7 4.4 84 78-163 63-154 (351)
155 PF11608 Limkain-b1: Limkain b 98.0 5.6E-05 1.2E-09 50.9 7.4 70 82-163 3-77 (90)
156 KOG1996 mRNA splicing factor [ 98.0 2.2E-05 4.7E-10 65.1 6.6 67 187-254 300-367 (378)
157 KOG0128 RNA-binding protein SA 98.0 6.8E-07 1.5E-11 83.7 -2.5 160 81-244 571-737 (881)
158 PF08777 RRM_3: RNA binding mo 97.9 3.3E-05 7.2E-10 55.8 5.8 59 82-146 2-60 (105)
159 COG5175 MOT2 Transcriptional r 97.9 1.8E-05 3.9E-10 66.8 4.9 112 81-194 114-241 (480)
160 KOG4849 mRNA cleavage factor I 97.8 1.8E-05 4E-10 67.0 4.3 78 171-249 78-157 (498)
161 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00012 2.6E-09 52.1 6.6 78 173-253 6-91 (100)
162 KOG2314 Translation initiation 97.7 0.00013 2.8E-09 65.8 7.5 78 171-250 56-140 (698)
163 KOG2416 Acinus (induces apopto 97.6 6.2E-05 1.3E-09 68.2 4.3 80 170-255 441-523 (718)
164 KOG2202 U2 snRNP splicing fact 97.6 3.4E-05 7.3E-10 63.0 2.3 66 188-254 83-148 (260)
165 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.6E-09 45.1 4.7 52 174-233 2-53 (53)
166 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.4E-09 44.3 4.9 52 82-140 2-53 (53)
167 KOG4210 Nuclear localization s 97.5 0.00011 2.4E-09 62.9 3.9 82 79-163 182-264 (285)
168 KOG3152 TBP-binding protein, a 97.4 0.00011 2.3E-09 60.0 2.9 73 172-245 73-157 (278)
169 KOG2314 Translation initiation 97.3 0.00079 1.7E-08 61.0 7.5 78 79-158 56-139 (698)
170 KOG1855 Predicted RNA-binding 97.3 0.00031 6.7E-09 61.4 4.4 71 77-147 227-310 (484)
171 PF08952 DUF1866: Domain of un 97.2 0.0015 3.2E-08 49.4 6.7 77 170-256 24-109 (146)
172 KOG3152 TBP-binding protein, a 97.2 0.00032 7E-09 57.3 3.2 71 80-150 73-155 (278)
173 PF10309 DUF2414: Protein of u 97.1 0.0037 7.9E-08 40.1 6.8 55 173-236 5-62 (62)
174 KOG0112 Large RNA-binding prot 97.0 0.00014 3E-09 69.1 -0.3 82 170-253 369-450 (975)
175 KOG2253 U1 snRNP complex, subu 97.0 0.0014 2.9E-08 60.7 5.8 107 80-195 39-157 (668)
176 PF07576 BRAP2: BRCA1-associat 97.0 0.011 2.4E-07 42.9 9.3 77 172-251 12-92 (110)
177 KOG2193 IGF-II mRNA-binding pr 96.9 0.00083 1.8E-08 58.7 3.3 80 174-260 2-82 (584)
178 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0071 1.5E-07 43.0 6.7 78 80-160 5-89 (100)
179 KOG0129 Predicted RNA-binding 96.7 0.0047 1E-07 55.6 6.8 64 78-141 367-431 (520)
180 KOG2135 Proteins containing th 96.7 0.001 2.3E-08 59.0 2.6 74 174-255 373-447 (526)
181 KOG2202 U2 snRNP splicing fact 96.6 0.0014 3E-08 53.8 2.4 55 104-161 92-146 (260)
182 KOG2416 Acinus (induces apopto 96.5 0.0028 6E-08 57.9 4.1 79 77-161 440-520 (718)
183 PF10309 DUF2414: Protein of u 96.5 0.024 5.1E-07 36.4 6.9 54 81-143 5-62 (62)
184 PF08675 RNA_bind: RNA binding 96.4 0.013 2.9E-07 39.6 5.9 54 174-237 10-63 (87)
185 PF04847 Calcipressin: Calcipr 96.4 0.0078 1.7E-07 48.0 5.5 64 185-255 7-72 (184)
186 KOG2068 MOT2 transcription fac 96.4 0.0014 3E-08 56.0 1.1 81 174-255 78-164 (327)
187 KOG3671 Actin regulatory prote 96.3 0.058 1.3E-06 48.6 10.8 30 82-111 482-511 (569)
188 KOG1996 mRNA splicing factor [ 96.3 0.017 3.7E-07 48.4 6.8 64 96-161 301-365 (378)
189 KOG4676 Splicing factor, argin 96.2 0.0086 1.9E-07 52.1 5.1 76 174-251 8-86 (479)
190 PF08675 RNA_bind: RNA binding 96.2 0.034 7.3E-07 37.7 6.7 55 82-145 10-64 (87)
191 PF07576 BRAP2: BRCA1-associat 96.0 0.088 1.9E-06 38.2 8.9 68 80-149 12-80 (110)
192 KOG4574 RNA-binding protein (c 95.8 0.0059 1.3E-07 58.1 2.5 74 177-257 302-377 (1007)
193 PF08952 DUF1866: Domain of un 95.7 0.042 9.2E-07 41.6 6.3 54 97-161 52-105 (146)
194 KOG2591 c-Mpl binding protein, 95.7 0.03 6.6E-07 51.0 6.3 73 171-250 173-248 (684)
195 PF15023 DUF4523: Protein of u 95.6 0.056 1.2E-06 40.5 6.4 74 170-252 83-160 (166)
196 KOG0804 Cytoplasmic Zn-finger 95.5 0.11 2.3E-06 46.4 9.0 68 173-243 74-142 (493)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.015 3.3E-07 46.2 3.1 85 172-257 6-101 (176)
198 KOG4574 RNA-binding protein (c 95.2 0.015 3.3E-07 55.5 2.9 74 83-162 300-373 (1007)
199 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 2.1 4.6E-05 36.3 14.4 158 78-237 12-212 (309)
200 PF11767 SET_assoc: Histone ly 94.9 0.21 4.5E-06 32.6 6.7 55 184-248 11-65 (66)
201 KOG0115 RNA-binding protein p5 94.8 0.043 9.3E-07 45.2 4.2 62 82-144 32-93 (275)
202 PF15023 DUF4523: Protein of u 94.5 0.16 3.6E-06 38.1 6.3 72 80-161 85-160 (166)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.032 6.9E-07 44.4 2.8 85 79-163 5-98 (176)
204 KOG2068 MOT2 transcription fac 94.3 0.024 5.2E-07 48.6 1.8 78 82-161 78-161 (327)
205 KOG4285 Mitotic phosphoprotein 94.2 0.19 4.2E-06 42.5 6.8 76 173-257 197-273 (350)
206 PF03880 DbpA: DbpA RNA bindin 94.1 0.36 7.7E-06 32.3 6.8 66 175-251 2-74 (74)
207 PF07292 NID: Nmi/IFP 35 domai 93.7 0.14 3.1E-06 35.4 4.3 69 126-195 1-74 (88)
208 KOG0804 Cytoplasmic Zn-finger 93.1 0.41 8.9E-06 42.8 7.2 70 79-150 72-142 (493)
209 KOG2591 c-Mpl binding protein, 93.0 0.2 4.3E-06 45.9 5.3 59 78-143 172-232 (684)
210 KOG2253 U1 snRNP complex, subu 93.0 0.069 1.5E-06 49.8 2.4 73 169-251 36-108 (668)
211 PF04847 Calcipressin: Calcipr 93.0 0.29 6.3E-06 39.1 5.7 62 94-163 8-71 (184)
212 KOG4285 Mitotic phosphoprotein 92.6 0.63 1.4E-05 39.5 7.3 70 81-159 197-266 (350)
213 KOG2135 Proteins containing th 92.4 0.11 2.4E-06 46.6 2.9 74 81-163 372-446 (526)
214 PF03880 DbpA: DbpA RNA bindin 91.9 1.4 3.1E-05 29.4 7.3 66 83-159 2-73 (74)
215 PHA03247 large tegument protei 89.3 2.2 4.8E-05 46.7 9.1 6 88-93 3003-3008(3151)
216 PF11767 SET_assoc: Histone ly 88.3 2.1 4.6E-05 27.8 5.5 48 92-148 11-58 (66)
217 KOG1923 Rac1 GTPase effector F 87.8 2.7 5.8E-05 40.5 7.9 12 83-94 387-398 (830)
218 PF10567 Nab6_mRNP_bdg: RNA-re 87.2 3.4 7.3E-05 35.2 7.4 88 169-257 11-111 (309)
219 KOG2318 Uncharacterized conser 86.3 4 8.8E-05 38.0 7.9 83 170-253 171-307 (650)
220 KOG4019 Calcineurin-mediated s 85.3 0.95 2.1E-05 35.5 3.0 78 175-259 12-95 (193)
221 KOG4672 Uncharacterized conser 85.3 5.6 0.00012 35.4 8.0 9 186-194 471-479 (487)
222 KOG2891 Surface glycoprotein [ 85.2 1.3 2.8E-05 37.2 4.0 132 125-257 77-271 (445)
223 PF07530 PRE_C2HC: Associated 84.8 1.6 3.5E-05 28.6 3.6 65 188-255 2-66 (68)
224 COG5178 PRP8 U5 snRNP spliceos 84.4 1 2.2E-05 45.3 3.4 32 80-111 71-102 (2365)
225 KOG4410 5-formyltetrahydrofola 83.0 5.4 0.00012 33.7 6.7 49 173-227 330-378 (396)
226 PRK14548 50S ribosomal protein 81.8 6.1 0.00013 27.1 5.6 58 176-236 23-81 (84)
227 KOG4483 Uncharacterized conser 81.6 10 0.00022 33.8 8.1 58 170-235 388-446 (528)
228 PHA01732 proline-rich protein 81.6 2 4.4E-05 29.1 3.0 6 110-115 66-71 (94)
229 KOG2318 Uncharacterized conser 79.4 12 0.00027 34.9 8.2 84 78-161 171-306 (650)
230 TIGR03636 L23_arch archaeal ri 79.2 9 0.00019 25.8 5.6 58 176-236 16-74 (77)
231 PF07292 NID: Nmi/IFP 35 domai 75.5 6.4 0.00014 27.3 4.2 68 219-299 1-71 (88)
232 KOG3424 40S ribosomal protein 73.3 12 0.00027 27.1 5.2 47 184-231 34-84 (132)
233 PF03468 XS: XS domain; Inter 71.6 9.3 0.0002 28.0 4.5 38 185-226 29-66 (116)
234 KOG4410 5-formyltetrahydrofola 70.7 12 0.00025 31.8 5.3 50 80-134 329-378 (396)
235 KOG4483 Uncharacterized conser 69.9 20 0.00043 32.0 6.8 60 75-141 385-445 (528)
236 TIGR02542 B_forsyth_147 Bacter 69.5 28 0.0006 25.3 6.3 47 181-227 82-130 (145)
237 KOG2295 C2H2 Zn-finger protein 68.3 2 4.4E-05 39.6 0.5 70 79-148 229-298 (648)
238 KOG1546 Metacaspase involved i 67.2 88 0.0019 27.5 16.1 118 81-210 64-203 (362)
239 PRK11901 hypothetical protein; 66.6 18 0.00039 31.5 5.8 62 172-239 244-307 (327)
240 PF14111 DUF4283: Domain of un 65.9 10 0.00022 28.9 4.1 115 84-207 18-138 (153)
241 PRK01178 rps24e 30S ribosomal 60.8 58 0.0012 23.2 6.8 49 183-232 29-81 (99)
242 smart00596 PRE_C2HC PRE_C2HC d 57.2 20 0.00043 23.5 3.4 63 188-254 2-65 (69)
243 PTZ00191 60S ribosomal protein 56.2 41 0.00089 25.7 5.5 57 176-235 84-141 (145)
244 PF14893 PNMA: PNMA 55.8 22 0.00047 31.4 4.6 76 79-162 16-96 (331)
245 PTZ00071 40S ribosomal protein 55.2 58 0.0012 24.5 6.1 48 183-231 34-86 (132)
246 PF02714 DUF221: Domain of unk 54.2 16 0.00034 32.1 3.6 39 219-259 1-39 (325)
247 PRK14548 50S ribosomal protein 53.8 67 0.0015 22.0 5.8 57 83-142 22-80 (84)
248 PF13689 DUF4154: Domain of un 53.5 32 0.0007 26.1 4.9 60 187-252 2-61 (145)
249 PRK10629 EnvZ/OmpR regulon mod 53.5 92 0.002 23.2 7.8 60 185-252 50-109 (127)
250 PRK11901 hypothetical protein; 50.8 1.7E+02 0.0038 25.6 10.0 65 78-146 242-307 (327)
251 PHA03378 EBNA-3B; Provisional 50.1 2.5E+02 0.0053 27.5 10.5 22 82-103 807-830 (991)
252 KOG2295 C2H2 Zn-finger protein 48.9 2.5 5.4E-05 39.1 -2.2 72 173-245 231-302 (648)
253 TIGR03636 L23_arch archaeal ri 48.3 83 0.0018 21.2 5.9 57 83-142 15-73 (77)
254 PF11823 DUF3343: Protein of u 47.6 27 0.00058 23.0 3.1 25 217-241 2-26 (73)
255 PRK10905 cell division protein 47.6 72 0.0016 27.9 6.3 62 80-145 246-308 (328)
256 KOG2893 Zn finger protein [Gen 47.1 1.7E+02 0.0036 24.4 8.7 12 181-192 318-329 (341)
257 KOG1830 Wiskott Aldrich syndro 46.0 1.5E+02 0.0033 27.0 8.1 30 228-257 479-508 (518)
258 KOG4213 RNA-binding protein La 44.3 35 0.00075 27.0 3.6 57 81-142 111-169 (205)
259 PF00403 HMA: Heavy-metal-asso 42.7 82 0.0018 19.5 5.6 54 175-235 1-58 (62)
260 COG0445 GidA Flavin-dependent 42.2 1.7E+02 0.0038 27.9 8.3 85 124-209 237-336 (621)
261 KOG4008 rRNA processing protei 41.0 28 0.0006 28.8 2.7 34 77-110 36-69 (261)
262 COG5193 LHP1 La protein, small 40.9 13 0.00027 33.3 0.9 61 80-140 173-243 (438)
263 PF07530 PRE_C2HC: Associated 40.5 68 0.0015 21.0 4.1 61 96-161 2-63 (68)
264 cd06405 PB1_Mekk2_3 The PB1 do 39.6 1.1E+02 0.0025 20.4 7.4 62 180-250 15-76 (79)
265 COG5638 Uncharacterized conser 38.8 2.6E+02 0.0055 25.4 8.4 38 216-253 258-297 (622)
266 KOG2675 Adenylate cyclase-asso 38.6 18 0.0004 32.7 1.5 14 219-232 453-466 (480)
267 KOG4019 Calcineurin-mediated s 37.3 29 0.00063 27.5 2.3 76 81-163 10-90 (193)
268 PF15513 DUF4651: Domain of un 36.6 76 0.0017 20.3 3.6 19 188-207 9-27 (62)
269 COG5178 PRP8 U5 snRNP spliceos 36.5 37 0.0008 35.0 3.3 7 1-7 1-7 (2365)
270 PF03439 Spt5-NGN: Early trans 36.4 58 0.0013 22.2 3.5 26 215-240 43-68 (84)
271 PRK10905 cell division protein 36.1 1.3E+02 0.0028 26.4 6.1 61 172-238 246-308 (328)
272 PRK13259 regulatory protein Sp 34.3 78 0.0017 22.2 3.8 26 200-225 2-27 (94)
273 cd06404 PB1_aPKC PB1 domain is 33.6 1.6E+02 0.0034 20.2 8.2 58 175-237 10-69 (83)
274 COG2004 RPS24A Ribosomal prote 31.1 2E+02 0.0044 20.7 6.1 48 183-231 30-81 (107)
275 PF04026 SpoVG: SpoVG; InterP 31.0 87 0.0019 21.5 3.6 48 200-254 2-51 (84)
276 CHL00030 rpl23 ribosomal prote 30.6 1.7E+02 0.0036 20.5 5.0 34 176-209 21-55 (93)
277 PF08734 GYD: GYD domain; Int 30.3 1.9E+02 0.0041 20.0 6.2 47 187-237 22-68 (91)
278 COG2088 SpoVG Uncharacterized 30.2 1.1E+02 0.0023 21.1 3.7 49 200-255 2-52 (95)
279 cd04908 ACT_Bt0572_1 N-termina 28.8 1.6E+02 0.0034 18.6 6.8 48 188-240 16-63 (66)
280 KOG0862 Synaptobrevin/VAMP-lik 28.4 39 0.00085 27.6 1.7 31 188-226 89-119 (216)
281 PF01690 PLRV_ORF5: Potato lea 28.2 57 0.0012 30.0 2.9 10 125-134 125-134 (465)
282 PF11411 DNA_ligase_IV: DNA li 27.8 48 0.001 18.6 1.5 16 91-106 19-34 (36)
283 cd00874 RNA_Cyclase_Class_II R 27.5 4.3E+02 0.0094 23.3 11.4 112 88-223 119-237 (326)
284 PF00564 PB1: PB1 domain; Int 26.9 1.9E+02 0.0042 19.1 7.7 64 179-249 16-80 (84)
285 COG5470 Uncharacterized conser 26.4 1.8E+02 0.0039 20.4 4.5 43 98-140 25-70 (96)
286 PF12091 DUF3567: Protein of u 26.4 99 0.0021 21.2 3.1 30 171-201 35-77 (85)
287 PF00276 Ribosomal_L23: Riboso 26.3 91 0.002 21.7 3.1 50 177-226 23-83 (91)
288 COG5507 Uncharacterized conser 25.0 95 0.0021 21.9 2.9 21 216-236 66-86 (117)
289 PRK12280 rplW 50S ribosomal pr 25.0 2.3E+02 0.0049 22.1 5.3 35 175-209 23-58 (158)
290 KOG1295 Nonsense-mediated deca 24.8 83 0.0018 28.1 3.2 68 173-241 7-77 (376)
291 KOG2675 Adenylate cyclase-asso 24.0 63 0.0014 29.4 2.3 8 221-228 385-392 (480)
292 KOG1985 Vesicle coat complex C 23.9 7.6E+02 0.017 24.9 12.3 219 1-225 77-342 (887)
293 PF14893 PNMA: PNMA 23.7 83 0.0018 27.8 3.1 83 172-257 17-100 (331)
294 KOG1131 RNA polymerase II tran 23.6 4.1E+02 0.0088 25.4 7.4 107 125-246 564-676 (755)
295 KOG0156 Cytochrome P450 CYP2 s 23.2 1.4E+02 0.003 28.1 4.6 62 174-246 33-97 (489)
296 KOG2187 tRNA uracil-5-methyltr 23.1 65 0.0014 30.2 2.3 41 216-256 63-103 (534)
297 COG2242 CobL Precorrin-6B meth 22.9 4.1E+02 0.0088 21.4 7.9 149 84-259 8-170 (187)
298 KOG1295 Nonsense-mediated deca 22.8 97 0.0021 27.7 3.2 70 79-148 5-77 (376)
299 PF02714 DUF221: Domain of unk 22.6 2E+02 0.0044 25.0 5.4 56 126-195 1-56 (325)
300 KOG4365 Uncharacterized conser 22.4 14 0.0003 33.4 -2.0 66 82-148 4-69 (572)
301 PHA00742 hypothetical protein 22.3 55 0.0012 25.6 1.5 63 175-241 91-157 (211)
302 PF13820 Nucleic_acid_bd: Puta 22.1 3.3E+02 0.0071 21.0 5.6 59 175-237 6-66 (149)
303 PF11491 DUF3213: Protein of u 21.9 2.4E+02 0.0052 19.3 4.2 66 176-249 3-72 (88)
304 TIGR03399 RNA_3prim_cycl RNA 3 21.7 5.7E+02 0.012 22.6 12.1 112 88-223 121-239 (326)
305 TIGR03793 TOMM_pelo TOMM prope 21.6 2.6E+02 0.0057 18.8 5.6 49 134-193 25-74 (77)
306 PF14581 SseB_C: SseB protein 21.3 2.7E+02 0.0059 19.7 5.0 78 174-252 6-89 (108)
307 KOG4365 Uncharacterized conser 21.3 15 0.00033 33.2 -2.0 78 174-253 4-81 (572)
308 KOG4213 RNA-binding protein La 21.1 2.6E+02 0.0056 22.3 4.9 64 185-250 118-183 (205)
309 cd06408 PB1_NoxR The PB1 domai 20.5 3E+02 0.0065 19.0 7.8 55 176-236 13-67 (86)
310 PRK05738 rplW 50S ribosomal pr 20.1 3.1E+02 0.0068 19.0 5.7 34 176-209 22-56 (92)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.9e-36 Score=260.25 Aligned_cols=174 Identities=25% Similarity=0.464 Sum_probs=158.6
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||++++|+++|+++|+.||.|++|++++++.+++++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceee
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
|.|+.... .....++|||+||+.++++++|+++|+ +||.|++++|++++.+++++|||||+|++.++|++|++.|
T Consensus 181 V~~a~p~~----~~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 181 VSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eecccccc----cccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 99886432 223457899999999999999999998 9999999999999989999999999999999999999999
Q ss_pred CCceeCC--eeeEEeecccCCCC
Q 022077 237 NGVFCST--RPMRIGPATNKKTV 257 (303)
Q Consensus 237 ~g~~~~g--~~l~v~~~~~~~~~ 257 (303)
|+..+.+ +.|+|.|++.+...
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccCCCceeEEEEECCccccc
Confidence 9998865 78999999876544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-34 Score=256.87 Aligned_cols=169 Identities=27% Similarity=0.494 Sum_probs=154.5
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.++|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999999999 788999998
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
+... ......++|||+||+.++++++|+++|+ .||.|..++++.+..++.++|||||+|++.++|.+|++.|||.
T Consensus 80 a~~~----~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 80 ARPS----SDSIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred eccc----ccccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 8643 2234467899999999999999999998 9999999999999888899999999999999999999999999
Q ss_pred eeCC--eeeEEeecccCC
Q 022077 240 FCST--RPMRIGPATNKK 255 (303)
Q Consensus 240 ~~~g--~~l~v~~~~~~~ 255 (303)
.+.| +.|+|.|+....
T Consensus 155 ~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPS 172 (352)
T ss_pred ccCCCceeEEEEECCCCC
Confidence 9876 678888887554
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-35 Score=232.51 Aligned_cols=171 Identities=29% Similarity=0.534 Sum_probs=158.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...-.+|||.|...++.++|++.|.+||+|.+++++||.+|+++|||+||.|-+.++|++||..+||..| ++|.||-+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecc
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ecCCCCCCC------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH
Q 022077 159 WASFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (303)
Q Consensus 159 ~~~~~~~~~------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 226 (303)
|+.++.... ......+++||||+...++|++|++.|+ .||.|.+|||+++ +|||||+|++.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecch
Confidence 998775432 3346678999999999999999999998 9999999999998 79999999999
Q ss_pred HHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 227 ~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
|+|.+||..|||.+|+|..+++.|.+......
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 99999999999999999999999999876543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.3e-34 Score=260.25 Aligned_cols=176 Identities=18% Similarity=0.370 Sum_probs=157.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++||||||++++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|||..+ .|+.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 77888887
Q ss_pred ecCCCCCC-------CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHH
Q 022077 159 WASFGAGE-------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 159 ~~~~~~~~-------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (303)
+....... .......++|||+||+.++++++|+++|+ .||.|++++|.+|..+++++|||||+|++.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 65422111 11223457899999999999999999998 99999999999999889999999999999999999
Q ss_pred HHHHhCCceeCCeeeEEeecccCCCC
Q 022077 232 AMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 232 A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
|+..|||..++|+.|+|.++..+...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999999999999999998875443
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.5e-34 Score=266.78 Aligned_cols=197 Identities=27% Similarity=0.464 Sum_probs=171.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCC
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~ 162 (303)
+||||||+.++|+++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+ .++.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988 789999999875
Q ss_pred CCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 163 GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
....+ .....+|||+||+.++++++|+++|+ .||.|.+|+|..+. +|+++|||||+|++.++|.+|++.|||..++
T Consensus 80 ~~~~~--~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 80 DPSLR--RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred ccccc--ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 43322 23456899999999999999999998 99999999999885 7889999999999999999999999999999
Q ss_pred CeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 243 TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 243 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
|+.|.|.....+..+.. ......++|||+++. ++| |+|.++|.
T Consensus 156 ~~~i~v~~~~~~~~~~~-----------------~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 156 DKEVYVGRFIKKHEREA-----------------APLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred CceEEEecccccccccc-----------------ccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 99999987665544321 122345789999777 677 88887773
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.8e-32 Score=243.81 Aligned_cols=176 Identities=26% Similarity=0.440 Sum_probs=157.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+||+.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|++.|+|..+.+....+++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999998888999999999999999999999999999987778889988
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 022077 160 ASFGAGEK------------------------------------------------------------------------ 167 (303)
Q Consensus 160 ~~~~~~~~------------------------------------------------------------------------ 167 (303)
+.......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 75332000
Q ss_pred ----------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHH
Q 022077 168 ----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 168 ----------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (303)
.....+.+|||+||+.++++++|+++|+ +||.|++++|++|..+|.++|||||+|++.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011223699999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeeEEeecccCCC
Q 022077 232 AMTEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 232 A~~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
|+..|||..|+||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999988753
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.7e-33 Score=235.75 Aligned_cols=179 Identities=22% Similarity=0.452 Sum_probs=161.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCCCCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~i~ 156 (303)
+.+..+||||.+|..++|+||+++|++||.|.+|.+++||.|+.++|||||.|.++++|.+|+.+|+... +.|....|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4567799999999999999999999999999999999999999999999999999999999999988754 788889999
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
|.++..+.. .-...++||||-|+..++|.||+++|+ +||.|++|.|++|. .+.+||||||.|++.|.|..|++.|
T Consensus 111 vk~Ad~E~e---r~~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 111 VKYADGERE---RIVEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred ecccchhhh---ccccchhhhhhhccccccHHHHHHHHH-hhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhh
Confidence 999875432 224568999999999999999999999 99999999999996 7899999999999999999999999
Q ss_pred CCce-e--CCeeeEEeecccCCCCCCcc
Q 022077 237 NGVF-C--STRPMRIGPATNKKTVSGQQ 261 (303)
Q Consensus 237 ~g~~-~--~g~~l~v~~~~~~~~~~~~~ 261 (303)
||.. + +...|.|+|++.++++..++
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHH
Confidence 9976 4 56789999999998876654
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-31 Score=245.16 Aligned_cols=195 Identities=14% Similarity=0.251 Sum_probs=158.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+...++|||+|||.++++++|+++|++||.|.++++++| .+|+++|||||+|.+.++|++|++.||+..+. .++.+.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccc
Confidence 345689999999999999999999999999999999999 68999999999999999999999999998884 3556666
Q ss_pred eecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEE-eeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
.++. ..++|||+||+.++++++|.++|+ +++. ++++.+. .....++++|||||+|++.++|..|++.
T Consensus 133 ~~S~----------~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 133 CISV----------DNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred cccc----------cCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 5542 357899999999999999999998 7764 4444333 2334567899999999999999999998
Q ss_pred hCC--ceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 236 MNG--VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 236 l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
|+. ..+.|+.|.|.|+.++...... .....++|||+|+. ++| |+|.++|.
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d~~-----------------~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVDED-----------------VMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred hhccceEecCceEEEEeeccccccccc-----------------ccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 864 4589999999999876432110 11134689999777 677 88888873
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-32 Score=219.83 Aligned_cols=181 Identities=30% Similarity=0.510 Sum_probs=153.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+++.++||||||+.++||+-|..+|++.|.|++++++.+ .++|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467799999999999999999999999999999999876 3455
Q ss_pred eecCCCCCCCCC-CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 158 NWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
.|+......+.. ......+||+.|...++.|+|++.|. +||+|.+++|++|..|+++|||+||.|-+.++|++||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 555544222222 22245699999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeecc-cC-cccccccc
Q 022077 237 NGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIFN-IK-NPVFQTFV 302 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~f~ 302 (303)
||..|++|.||-.|+..|... ...+-...+-+.|++++.||+||+|+|.+ +| |+|+++|+
T Consensus 125 nGqWlG~R~IRTNWATRKp~e------~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs 186 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSE------MNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS 186 (321)
T ss_pred CCeeeccceeeccccccCccc------cCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc
Confidence 999999999999999988722 11222455667899999999999999997 88 88888885
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.98 E-value=1.9e-31 Score=250.59 Aligned_cols=213 Identities=19% Similarity=0.378 Sum_probs=172.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...+|||+||+.++++++|+++|+.||.|.+|++..+. +|+++|||||+|++.++|.+|++.|+|..+ .++.+.+.+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEec
Confidence 35689999999999999999999999999999999886 688999999999999999999999999998 677787765
Q ss_pred cCCCCCC-CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 160 ASFGAGE-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 160 ~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
....... .......++|||+||+.++++++|+++|+ .||.|+++.+..+. +|+++|||||+|++.++|.+|++.|||
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 5433222 22345567899999999999999999998 99999999999985 788999999999999999999999999
Q ss_pred ceeC----CeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 239 VFCS----TRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 239 ~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
..+. |+.|.|.++..+..+.... ...+.... .........++|||+|+. ++| ++|.++|
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~---~~~~~~~~-~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAEL---RRKFEELQ-QERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHH---HhhHHhhh-hhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 9999 9999999987765442111 00110000 011223456789999777 577 8888887
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.2e-31 Score=223.53 Aligned_cols=194 Identities=12% Similarity=0.235 Sum_probs=163.1
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...+.||||.||.++.|++|.-+|++.|.|-++++++|+.+|.++|||||.|.+.++|++|++.||+..|. .|+.|+|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999996 68888887
Q ss_pred ecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
.+. ..++|||||||..+++|+|.+.|+ +-++ |++|.+..+. +..+++|||||+|++...|..|.++|
T Consensus 160 ~Sv----------an~RLFiG~IPK~k~keeIlee~~-kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV----------ANCRLFIGNIPKTKKKEEILEEMK-KVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee----------ecceeEeccCCccccHHHHHHHHH-hhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 654 358999999999999999999998 5554 6666655444 35678999999999999999999887
Q ss_pred C-C-ceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 237 N-G-VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 237 ~-g-~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
- | ..++|..+.|.|+.++...... ....=..|||+|+. ++| |.|.++|
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded-----------------~ms~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDED-----------------TMSKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChh-----------------hhhheeeeeeeccchhhhHHHHHHHH
Confidence 3 3 5589999999999998765431 11223589999888 566 4444555
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.7e-30 Score=237.40 Aligned_cols=172 Identities=24% Similarity=0.419 Sum_probs=152.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+..+++++|+++|+.||.|.+|.++.++.+|+++|||||+|.+.++|.+|+. |+|..+ .++.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~--~g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML--LGRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE--CCeeeEE
Confidence 3457899999999999999999999999999999999999999999999999999999999995 899999 6777777
Q ss_pred eecCCCCCC--------CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHH
Q 022077 158 NWASFGAGE--------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (303)
Q Consensus 158 ~~~~~~~~~--------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 229 (303)
.++...... .......++|||+||+..+++++|+++|+ .||.|..|.++.+..+|+++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 765432111 01123368999999999999999999998 999999999999998889999999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEeeccc
Q 022077 230 LRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 230 ~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
.+|+..|||..|.|+.|+|.|+..
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999763
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=6.6e-30 Score=234.71 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=137.8
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh--CCCCCCCCCceeEee
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF--NGTPMPNGEQNFRLN 158 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~~~~~~~~i~v~ 158 (303)
+++|||+|||+++++++|+++|+.||.|.++.+++++ +||||+|++.++|.+|++.+ ++..+ .++.|+|.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEE
Confidence 6899999999999999999999999999999998643 69999999999999999875 55666 88999999
Q ss_pred ecCCCCCCCCC--------CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHH
Q 022077 159 WASFGAGEKRD--------DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (303)
Q Consensus 159 ~~~~~~~~~~~--------~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (303)
|+......... .....+|+|+||+.++++++|+++|+ .||.|++|.|+++. + +++|||+|++.++|.
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~--~--~~~afVef~~~~~A~ 148 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKN--N--VFQALVEFESVNSAQ 148 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecC--C--ceEEEEEECCHHHHH
Confidence 98654322111 11234789999999999999999998 99999999998764 2 468999999999999
Q ss_pred HHHHHhCCceeCC--eeeEEeecccCC
Q 022077 231 RAMTEMNGVFCST--RPMRIGPATNKK 255 (303)
Q Consensus 231 ~A~~~l~g~~~~g--~~l~v~~~~~~~ 255 (303)
+|++.|||..|.| +.|+|.|++.+.
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCC
Confidence 9999999999854 589999988644
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.1e-29 Score=231.41 Aligned_cols=212 Identities=18% Similarity=0.277 Sum_probs=163.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...+|||+||+..+|+++|+++|+.||.|.+|.+.++.. +++|||+|.+.++|.+|++.|||..|.++++.++|.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999987643 3689999999999999999999999987777888888
Q ss_pred cCCCCC-------CC-----------------------------------------------------------------
Q 022077 160 ASFGAG-------EK----------------------------------------------------------------- 167 (303)
Q Consensus 160 ~~~~~~-------~~----------------------------------------------------------------- 167 (303)
+..... ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 753110 00
Q ss_pred -------------------CCCCCCceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHH
Q 022077 168 -------------------RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (303)
Q Consensus 168 -------------------~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 227 (303)
....++++|||+||+. .+++++|+++|+ .||.|.+|+|++++ +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012457999999997 699999999998 99999999999874 689999999999
Q ss_pred HHHHHHHHhCCceeCCeeeEEeecccCCCCCCcc---ccCC---CCccCcc---------ccccCCCCCCcEEEEeeec-
Q 022077 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQ---QYPK---ASYQNSQ---------VAQSDDDPNNTTVSTVVIF- 291 (303)
Q Consensus 228 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~---~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~- 291 (303)
+|.+|+..|||..|.|+.|+|.+++......... .... ..|.... .....-.+.+.+|||+|+.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 9999999999999999999999987653211110 0000 0111000 0001112345799999777
Q ss_pred ccC-ccccccc
Q 022077 292 NIK-NPVFQTF 301 (303)
Q Consensus 292 ~~~-~~~~~~f 301 (303)
++| |+|.++|
T Consensus 405 ~~tee~L~~lF 415 (481)
T TIGR01649 405 SVSEEDLKELF 415 (481)
T ss_pred CCCHHHHHHHH
Confidence 678 8888887
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=196.13 Aligned_cols=175 Identities=27% Similarity=0.474 Sum_probs=159.5
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.+...+||||||+..++++.|+++|-+.|.|.++++.+++.+...+|||||+|.++++|+-|++.||...+ -|+.|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999997777 7899999
Q ss_pred eecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce-EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
..++. .......+.+|||+||...+++..|.+.|+ .||.+.+ -+|+++..+|.++|+|||.|++.+.+.+|+..|
T Consensus 84 ~kas~---~~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 84 NKASA---HQKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred Eeccc---ccccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 98872 223334458999999999999999999999 9999876 489999999999999999999999999999999
Q ss_pred CCceeCCeeeEEeecccCCCCC
Q 022077 237 NGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
||..++++.+.|.++..+...+
T Consensus 160 ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999877665
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=202.94 Aligned_cols=172 Identities=27% Similarity=0.495 Sum_probs=158.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.+..+.|+|.-||.++|+|+|+.+|...|+|++|+++||+.+|.+.||+||.|-+..+|++|+..|||.++ ..+.|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred eecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 158 NWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
+++... .+......|||.+||...+..||.++|+ .||.|...+|+.|..+|.++|.+||+|+..++|++|+..||
T Consensus 116 SyARPS----s~~Ik~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 116 SYARPS----SDSIKDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EeccCC----hhhhcccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 998755 3446678899999999999999999998 99999999999999999999999999999999999999999
Q ss_pred Ccee--CCeeeEEeecccCCC
Q 022077 238 GVFC--STRPMRIGPATNKKT 256 (303)
Q Consensus 238 g~~~--~g~~l~v~~~~~~~~ 256 (303)
|..- +...|.|+|+.....
T Consensus 191 G~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCCCCeEEEecCCccc
Confidence 9884 456799999887643
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=4.6e-29 Score=228.11 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=162.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEe-cCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIR-NKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
...++|||+|||.++|+++|.+.|++++. +.++.+.. ....++++|||||+|++.++|.+|++.|+...+...++.|+
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999865 44444433 23456789999999999999999999887655444788999
Q ss_pred eeecCCCCCCCC-CCCCCceEEEcCCCcccCHHHHHHHHhhhC--CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 157 LNWASFGAGEKR-DDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 157 v~~~~~~~~~~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
|+|+........ .....++|||+||+.++++++|+++|+ .| |.|++|+++ ++||||+|++.++|.+|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 999976543322 224457899999999999999999998 99 999999875 459999999999999999
Q ss_pred HHhCCceeCCeeeEEeecccCCCCCCccccCC------CCccCccccccCCCCCCcEEEEee-ecccC-cccccccc
Q 022077 234 TEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK------ASYQNSQVAQSDDDPNNTTVSTVV-IFNIK-NPVFQTFV 302 (303)
Q Consensus 234 ~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~f~ 302 (303)
+.|||.+|+|+.|+|.|++++......+.... ......+......++...++++++ .++.+ +.+.++|.
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 99999999999999999988654321110000 000011111223445567889984 45777 88888774
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.3e-28 Score=225.77 Aligned_cols=170 Identities=17% Similarity=0.260 Sum_probs=140.5
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcC------------CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTG------------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g------------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 143 (303)
......++|||||||..+|+++|+++|..++ .|..+.+ ++.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 3456678999999999999999999999752 2333333 345689999999999999999 59
Q ss_pred CCCCCCCCCceeEeeecCCCCC-------------------------CCCCCCCCceEEEcCCCcccCHHHHHHHHhhhC
Q 022077 144 NGTPMPNGEQNFRLNWASFGAG-------------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARY 198 (303)
Q Consensus 144 ~g~~~~~~~~~i~v~~~~~~~~-------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~ 198 (303)
+|..+ .++.|+|.+...... .........+|||+||+..+++++|+++|+ .|
T Consensus 243 ~g~~~--~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~ 319 (509)
T TIGR01642 243 DSIIY--SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SF 319 (509)
T ss_pred CCeEe--eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hc
Confidence 99988 667788764321110 000123357899999999999999999998 99
Q ss_pred CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCC
Q 022077 199 PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 199 G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 255 (303)
|.|..+.|+.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.++....
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999998899999999999999999999999999999999999999987654
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=8.5e-28 Score=191.56 Aligned_cols=176 Identities=24% Similarity=0.391 Sum_probs=158.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.-....|||++||..+|..+|+.+|++||.|...++..|..||.++|.+||.|...++|++||+.|||..-.+....|.|
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITV 203 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEE
Confidence 34556899999999999999999999999998889999999999999999999999999999999999998888888999
Q ss_pred eecCCCCCCC-----------------------------------------------------------CCCCCCceEEE
Q 022077 158 NWASFGAGEK-----------------------------------------------------------RDDTPDHTIFV 178 (303)
Q Consensus 158 ~~~~~~~~~~-----------------------------------------------------------~~~~~~~~l~v 178 (303)
.++....... .......+|||
T Consensus 204 KFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFv 283 (360)
T KOG0145|consen 204 KFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFV 283 (360)
T ss_pred EecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEE
Confidence 8875321110 01244678999
Q ss_pred cCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 179 GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 179 ~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
.||..+.+|.-|.++|. .||.|.+++|++|..+++.|||+||.+.+.++|..|+..|||..+++|.|.|.|...+
T Consensus 284 YNLspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 284 YNLSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EecCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999999998765
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=206.46 Aligned_cols=173 Identities=20% Similarity=0.291 Sum_probs=152.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCC-CCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQ-TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
+...|+|||||+|.+.++++|.+.|++.+. |++|.+..+.. ..+++|||||+|++...|.-|.+.|-...|...+..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 446789999999999999999999999987 88888887653 3588999999999999999999988888887799999
Q ss_pred EeeecCCCCCCCCC-CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 156 RLNWASFGAGEKRD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 156 ~v~~~~~~~~~~~~-~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
.|+|+........+ ....+.|||+||+.++|+|.|+++|+ .||.|++|+.++| ||||.|.++++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 99999876554433 34467899999999999999999998 9999999988755 89999999999999999
Q ss_pred HhCCceeCCeeeEEeecccCCCCCC
Q 022077 235 EMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 235 ~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
.+||++|+|..|.|.++++-.....
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HhcCceecCceEEEEecCChhhhcc
Confidence 9999999999999999999654433
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1e-26 Score=216.57 Aligned_cols=173 Identities=18% Similarity=0.331 Sum_probs=146.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+..+|+++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++.|+|..+ .++.|+|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4567999999999999999999999999999999999998999999999999999999999999999999 67788888
Q ss_pred ecCCCCCCC------------------------CCCCCCceEEEcCCCcc--c--------CHHHHHHHHhhhCCCcceE
Q 022077 159 WASFGAGEK------------------------RDDTPDHTIFVGDLAAD--V--------TDYMLQETFRARYPSTKGA 204 (303)
Q Consensus 159 ~~~~~~~~~------------------------~~~~~~~~l~v~nl~~~--~--------~~~~l~~~f~~~~G~i~~~ 204 (303)
++....... ....++++|+|.|+... + ..++|+++|+ +||.|+.|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 875322110 01235678999998532 1 2368999998 99999999
Q ss_pred EEEeeC---CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 205 KVVIDR---LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 205 ~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
.|.++. .++...|+|||+|++.++|.+|+..|||..|+|+.|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 998753 23456799999999999999999999999999999999997754
No 22
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.6e-27 Score=187.17 Aligned_cols=177 Identities=24% Similarity=0.444 Sum_probs=156.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~i~v 157 (303)
.+.++||||-|...-.|||++.+|..||.|.+|.+.+.. .|.+||||||.|.+..+|..||..|+|.. +.|....+.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999999987 68999999999999999999999999965 6666666666
Q ss_pred eecCCCCC------------------------------------------------------------------------
Q 022077 158 NWASFGAG------------------------------------------------------------------------ 165 (303)
Q Consensus 158 ~~~~~~~~------------------------------------------------------------------------ 165 (303)
.++..++.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 66542200
Q ss_pred --------------------------------------------------------------------------------
Q 022077 166 -------------------------------------------------------------------------------- 165 (303)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (303)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred ----------------------CCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEe
Q 022077 166 ----------------------EKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223 (303)
Q Consensus 166 ----------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f 223 (303)
..+....+|+|||.+||.++.+.||.+.|- .||.|++.+|+.|+.|+.+|.|+||.|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeEec
Confidence 001136689999999999999999999998 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 224 GDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 224 ~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
++..+|..||..|||..|+-++|+|.+.++|+..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999999998754
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=201.28 Aligned_cols=175 Identities=20% Similarity=0.351 Sum_probs=155.9
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
..||||++||++++.++|.++|+..|.|..+.+..++.++..+||+||.|...+++.+|+..+++..+ .|+.++|..+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceecccccc
Confidence 37999999999999999999999999999999999998899999999999999999999999999999 7888888887
Q ss_pred CCCCCCC--------------------CC--CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeE
Q 022077 161 SFGAGEK--------------------RD--DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (303)
Q Consensus 161 ~~~~~~~--------------------~~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~ 218 (303)
....... .. ..+..+|.|+|||+.+.+.+|+.+|+ .||.|.+|.|.+.. .|+-.||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~-dgklcGF 160 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKK-DGKLCGF 160 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCC-CCCccce
Confidence 6543221 01 23367899999999999999999999 99999999999776 5566799
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCC
Q 022077 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 219 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
|||.|....+|..|++.+||..|+||.|.|.|+-.+..-+.
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 99999999999999999999999999999999988765443
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.8e-27 Score=196.16 Aligned_cols=171 Identities=18% Similarity=0.386 Sum_probs=154.2
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
-|+||||.+.+.+.|+.|+..|..||.|+++.+.+|..|++.||||||+|+-.+.|..|++.+||..+ +||.++|.+-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 8899999854
Q ss_pred CCCCCCC-------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 161 SFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 161 ~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
+.-.... .+...-.+|||..+..+++++||+..|+ .||+|++|.+.++...+..+||+||+|.+..+-..|+
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE-AFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHH-hhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 4221111 2234457899999999999999999998 9999999999999988899999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecccC
Q 022077 234 TEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 234 ~~l~g~~~~g~~l~v~~~~~~ 254 (303)
..||-..++|..|+|..+...
T Consensus 270 asMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhcchhhcccceEecccccCC
Confidence 999999999999999775543
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.8e-26 Score=200.22 Aligned_cols=157 Identities=27% Similarity=0.515 Sum_probs=146.3
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
..|||| +++|+.+|+++|+.+|.+.++++.+|. | +.|||||.|.+.++|.+|++++|...+ .|+.+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 999999999999999999999999998 6 999999999999999999999999999 89999999998
Q ss_pred CCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
..... +||.||+.+++..+|.++|+ .||+|.+|++..+. .| ++|| ||+|++.++|.+|+..|||..+
T Consensus 74 rd~~~---------~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 74 RDPSL---------VFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred cCCce---------eeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 55332 99999999999999999999 99999999999996 44 8999 9999999999999999999999
Q ss_pred CCeeeEEeecccCCCCCC
Q 022077 242 STRPMRIGPATNKKTVSG 259 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~~~~ 259 (303)
.|+.|.|.....+..+..
T Consensus 141 ~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREA 158 (369)
T ss_pred CCCeeEEeeccchhhhcc
Confidence 999999999888876654
No 26
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=7.9e-27 Score=188.86 Aligned_cols=150 Identities=21% Similarity=0.438 Sum_probs=138.7
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
.+|||||||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.||+.|+|..+ .|..|+|.-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 47999999999999999999999999999999986 899999999999999999999999 78888888776
Q ss_pred CCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
.+ ...+.+|+|+||...++..||++.|. +||.|.+|.|++| |+||.|+-.++|..|++.|+|.+|
T Consensus 73 sK------sk~stkl~vgNis~tctn~ElRa~fe-~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 73 SK------SKASTKLHVGNISPTCTNQELRAKFE-KYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred cc------CCCccccccCCCCccccCHHHhhhhc-ccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 43 45678999999999999999999998 9999999999855 899999999999999999999999
Q ss_pred CCeeeEEeecccCCC
Q 022077 242 STRPMRIGPATNKKT 256 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~ 256 (303)
.|++++|..++.+-+
T Consensus 138 ~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLR 152 (346)
T ss_pred ccceeeeeeeccccc
Confidence 999999999887643
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.2e-26 Score=197.06 Aligned_cols=174 Identities=28% Similarity=0.484 Sum_probs=151.4
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
.-+|+|.|||+.|.+.+|+.+|+.||.|..+.|.+.. .|+..|||||+|....+|.+|++.+||..| .|+.|-|+|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5689999999999999999999999999999999766 566669999999999999999999999999 8899999998
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q 022077 161 SFGAGE-------------------------------------------------------------------------- 166 (303)
Q Consensus 161 ~~~~~~-------------------------------------------------------------------------- 166 (303)
-.....
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 321000
Q ss_pred ------------CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 167 ------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 167 ------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
........+|||+||++++++++|.++|+ +||.|.++.|+.++.|+.++|.|||.|.+..+|..||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 00012237899999999999999999998 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceeCCeeeEEeecccCCCCC
Q 022077 235 EM-----NG-VFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 235 ~l-----~g-~~~~g~~l~v~~~~~~~~~~ 258 (303)
.. .| ..+.||.|+|..+..++...
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 76 33 66899999999998876543
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.1e-24 Score=198.41 Aligned_cols=167 Identities=19% Similarity=0.363 Sum_probs=142.0
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
.++|||+||+..+|+++|+++|+.||.|..|.+.++..+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEc
Confidence 68999999999999999999999999999999999998899999999999999999999999999888 7889999984
Q ss_pred CCCCCC-----------------------------------C--------------------------------------
Q 022077 161 SFGAGE-----------------------------------K-------------------------------------- 167 (303)
Q Consensus 161 ~~~~~~-----------------------------------~-------------------------------------- 167 (303)
...... .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 311000 0
Q ss_pred -------------CCCCCCceEEEcCCCcccC----------HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeC
Q 022077 168 -------------RDDTPDHTIFVGDLAADVT----------DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG 224 (303)
Q Consensus 168 -------------~~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 224 (303)
.....+++|+|.||-...+ .+||++.|+ +||.|++|.|.. ....|++||+|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~----~~~~G~~fV~F~ 418 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDT----KNSAGKIYLKFS 418 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeC----CCCceeEEEEEC
Confidence 0113457788999844333 368999998 999999998863 345799999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 225 DESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 225 ~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
+.++|.+|+..|||+.|+|+.|.|.|....
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999999999999999999999999998754
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=9.9e-25 Score=185.44 Aligned_cols=176 Identities=23% Similarity=0.412 Sum_probs=157.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCCCCceeEee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNFRLN 158 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~i~v~ 158 (303)
+.++||||-|+..+||.+++++|++||.|++|.|+|+. .+.++|||||.|.+.+.|..|++.|||.. |.|....+-|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 46799999999999999999999999999999999998 68999999999999999999999999965 77788889999
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 022077 159 WASFGAGEK----------------------------------------------------------------------- 167 (303)
Q Consensus 159 ~~~~~~~~~----------------------------------------------------------------------- 167 (303)
|+...+...
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 885320000
Q ss_pred --------------------------------------------------------------------------------
Q 022077 168 -------------------------------------------------------------------------------- 167 (303)
Q Consensus 168 -------------------------------------------------------------------------------- 167 (303)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred ---------------------------------------------------------CCCCCCceEEEcCCCcccCHHHH
Q 022077 168 ---------------------------------------------------------RDDTPDHTIFVGDLAADVTDYML 190 (303)
Q Consensus 168 ---------------------------------------------------------~~~~~~~~l~v~nl~~~~~~~~l 190 (303)
.....+..|||.+||.++-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 00245678999999999999999
Q ss_pred HHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 191 ~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
...|. .||.|.+.+++.|+.+|.++.|+||.|++..+|..||..|||..+++++++|...+.+.+.
T Consensus 442 ~~~f~-pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 442 IATFQ-PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHhc-cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99998 9999999999999999999999999999999999999999999999999999998876543
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=177.79 Aligned_cols=177 Identities=24% Similarity=0.426 Sum_probs=151.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
.+.++||||+|+|+++++.|++.|.+||.|.+|.+++++.+++++||+||+|++.+...+++.. .-..+ .++.|...
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k 80 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPK 80 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCccccce
Confidence 3779999999999999999999999999999999999999999999999999999998888742 23334 55556655
Q ss_pred ecCCCCCCC--CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 159 WASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
.+....... ......+++||++|+.++++++++++|. +||.|..+.++.|..+.+.+||+||.|++.++..+++. .
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe-~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFE-QFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhh-ccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 554433222 2223577999999999999999999997 99999999999999999999999999999999999976 4
Q ss_pred CCceeCCeeeEEeecccCCCCCCc
Q 022077 237 NGVFCSTRPMRIGPATNKKTVSGQ 260 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~~~~~~~ 260 (303)
+-+.|+|+.+.|..|.++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceeeecCceeeEeeccchhhcccc
Confidence 889999999999999999876543
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.89 E-value=2.4e-23 Score=182.44 Aligned_cols=178 Identities=20% Similarity=0.394 Sum_probs=154.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
++...+++|+--|...++..+|.++|+..|.|.+|.++.|+.+++++|.|||+|.+.+..-.|+ .|+|..+ .|..|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 4556789999999999999999999999999999999999999999999999999999999999 6899999 566666
Q ss_pred eeecCCC--CC-------C-CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH
Q 022077 157 LNWASFG--AG-------E-KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (303)
Q Consensus 157 v~~~~~~--~~-------~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 226 (303)
|...... .. . .....+-..||||||..++++++|+.+|+ .||.|..|.+..|..+|.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ife-pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFE-PFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhcc-CcccceeeeeccccccccccCcceEEEecH
Confidence 6543211 00 0 11123334499999999999999999998 999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 227 SEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 227 ~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
++|.+|+..|||.+|.|+.|+|.....+-..+
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999999888765544
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=181.19 Aligned_cols=172 Identities=20% Similarity=0.353 Sum_probs=145.5
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCC---CCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
++|||.||++++|.++|...|...|.|.++.|...+.. -.+.|||||+|.+.++|.+|++.|+|+.++ |+.+.|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld--GH~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD--GHKLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec--CceEEEE
Confidence 44999999999999999999999999999988776522 146699999999999999999999999995 5555555
Q ss_pred ecCCCC-----CCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 159 WASFGA-----GEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 159 ~~~~~~-----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
++.... .........++|+|+|||+..+..+|+++|. .||.|.+|+|......+.++|||||+|-+..+|.+|+
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred eccCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 554110 1112233367899999999999999999998 9999999999988656677999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecccCCC
Q 022077 234 TEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 234 ~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
.+|...-+.||+|.+.|+.....
T Consensus 673 ~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 673 DALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HhhcccceechhhheehhccchH
Confidence 99999999999999999998754
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.1e-22 Score=174.87 Aligned_cols=208 Identities=21% Similarity=0.408 Sum_probs=159.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCC
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~ 162 (303)
.|||.||+.+++.++|.++|+.||.|.+|++..+.. | ++|| ||+|++.+.|.+|++.+||..+ .++.+-+.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeeccc
Confidence 399999999999999999999999999999999973 5 9999 9999999999999999999999 556666654443
Q ss_pred CCCCC----CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 163 GAGEK----RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 163 ~~~~~----~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
..... .....-..+++.++..+.++++|.++|+ .||.|.++.++.+. .+++++|+||.|++.++|..|+..||+
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccC
Confidence 22111 1223345689999999999999999998 99999999999996 667899999999999999999999999
Q ss_pred ceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeecc-cC-ccccccc
Q 022077 239 VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIFN-IK-NPVFQTF 301 (303)
Q Consensus 239 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~f 301 (303)
..+.+..+.|.-+..+..+...- +..+ ...............||++|... ++ +++++.|
T Consensus 231 ~~~~~~~~~V~~aqkk~e~~~~l---~~~~-~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f 291 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSEREAEL---KRKF-EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIF 291 (369)
T ss_pred CcCCccceeecccccchhhHHHH---hhhh-HhhhhhccccccccccccccCccccchhHHHHHH
Confidence 99999999998777633221110 0000 00111112233456788887663 44 6665544
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=1e-20 Score=173.80 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=74.3
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+||+.++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.++|.+|++.||+..+ +|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEe
Confidence 457999999999999999999999999999999999998899999999999999999999999999998 788888876
Q ss_pred c
Q 022077 160 A 160 (303)
Q Consensus 160 ~ 160 (303)
+
T Consensus 281 A 281 (612)
T TIGR01645 281 C 281 (612)
T ss_pred c
Confidence 5
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=142.39 Aligned_cols=161 Identities=21% Similarity=0.418 Sum_probs=139.2
Q ss_pred cceEEEcCCCccCCHHHHHH----HHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 81 IRTLWIGDLQYWMDETYLNT----CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..+ -|+.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhh
Confidence 34999999999999999998 999999999888776 567889999999999999999999999999 678888
Q ss_pred eeecCCCCCCC----------------------------------------------CCCCCCceEEEcCCCcccCHHHH
Q 022077 157 LNWASFGAGEK----------------------------------------------RDDTPDHTIFVGDLAADVTDYML 190 (303)
Q Consensus 157 v~~~~~~~~~~----------------------------------------------~~~~~~~~l~v~nl~~~~~~~~l 190 (303)
+.|+..+...- ....+...||+.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 88875431110 11345678999999999999999
Q ss_pred HHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEeecc
Q 022077 191 QETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (303)
Q Consensus 191 ~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 252 (303)
..+|. .|...++++++... .+.|||+|.+...|..|...|.|..+. ...++|.+++
T Consensus 164 ~~lf~-qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFE-QFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHh-hCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99998 99999999998765 779999999999999999999999886 8888888764
No 36
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.84 E-value=2.1e-20 Score=163.26 Aligned_cols=112 Identities=23% Similarity=0.377 Sum_probs=98.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.|..+++++|||||+|.+.++|++|++.|||..+.++.|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 3455678999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 248 IGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 248 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
|.|+++.... ..+++|||+++. ++| |+|.++|.
T Consensus 181 V~~a~p~~~~----------------------~~~~~lfV~nLp~~vtee~L~~~F~ 215 (346)
T TIGR01659 181 VSYARPGGES----------------------IKDTNLYVTNLPRTITDDQLDTIFG 215 (346)
T ss_pred eecccccccc----------------------cccceeEEeCCCCcccHHHHHHHHH
Confidence 9998754311 134789999666 788 88888873
No 37
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=135.55 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=126.9
Q ss_pred CCCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecC-CCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC-CC
Q 022077 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GE 152 (303)
Q Consensus 75 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~-~~ 152 (303)
..+....+||||.+||.++...+|..+|..|-..+.+.+.... .....+-+|||.|.+...|..|+..|||..|+- .+
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 3455678999999999999999999999998777766665433 222345799999999999999999999999863 46
Q ss_pred ceeEeeecCCCCCCC-----------------------------------------------------------------
Q 022077 153 QNFRLNWASFGAGEK----------------------------------------------------------------- 167 (303)
Q Consensus 153 ~~i~v~~~~~~~~~~----------------------------------------------------------------- 167 (303)
..+++.+++......
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~ 187 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPD 187 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhh
Confidence 667777664321000
Q ss_pred -----------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHH
Q 022077 168 -----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQL 230 (303)
Q Consensus 168 -----------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (303)
.....+.+|||.||..+++|++|+.+|+ .|-....++|... .| ...||++|++.+.|.
T Consensus 188 ~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 188 SKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GG--MPVAFADFEEIEQAT 262 (284)
T ss_pred hcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CC--cceEeecHHHHHHHH
Confidence 0013356899999999999999999998 9999888777533 12 457999999999999
Q ss_pred HHHHHhCCcee
Q 022077 231 RAMTEMNGVFC 241 (303)
Q Consensus 231 ~A~~~l~g~~~ 241 (303)
.|+..|.|..|
T Consensus 263 ~am~~lqg~~~ 273 (284)
T KOG1457|consen 263 DAMNHLQGNLL 273 (284)
T ss_pred HHHHHhhccee
Confidence 99999999776
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=6e-19 Score=135.36 Aligned_cols=87 Identities=33% Similarity=0.637 Sum_probs=81.6
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...+++|||+||+.++++++|+++|+ +||.|++++|+.|..+++++|||||+|++.++|++|++.||+..|+|+.|+|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
|++.+...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876543
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=1.2e-18 Score=153.09 Aligned_cols=166 Identities=17% Similarity=0.334 Sum_probs=132.1
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
..||||||..++++++|+.+|+.||.|..|.+.+|..||+++|||||+|.+.++|++|++.|||..+ .|+.|+|....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~ 356 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVT 356 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEee
Confidence 3499999999999999999999999999999999998999999999999999999999999999777 77888876332
Q ss_pred CCCCC--------------------------------------------------------------------CCCC---
Q 022077 162 FGAGE--------------------------------------------------------------------KRDD--- 170 (303)
Q Consensus 162 ~~~~~--------------------------------------------------------------------~~~~--- 170 (303)
..-.. ....
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 10000 0000
Q ss_pred ----CCCceEEEcCCCc-------cc---CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 171 ----TPDHTIFVGDLAA-------DV---TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 171 ----~~~~~l~v~nl~~-------~~---~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
.++.++.+.|+=. +| -.||+.+.|+ +||+|..|.|.+. +.|+.||.|.+.++|..|+..|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHH
Confidence 2334455555411 11 1478889998 9999988877433 3599999999999999999999
Q ss_pred CCceeCCeeeEEeecccCC
Q 022077 237 NGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~~ 255 (303)
||..|.|+.|...|-....
T Consensus 511 hgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 511 HGRWFAGRMITAKYLPLER 529 (549)
T ss_pred hhhhhccceeEEEEeehhh
Confidence 9999999999999976543
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=7.2e-18 Score=146.45 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=129.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
.....|-+.+|||++|+++|.++|+.++ |+++.+.+. +|+..|-|||+|.+.+++++|++ .+...+ +.+.|.|.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~m--g~RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESM--GHRYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHh--CCceEEEE
Confidence 4456788899999999999999999986 677555554 79999999999999999999996 477777 77888876
Q ss_pred ecCCCCCCC-------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce-EEEEeeCCCCCceeEEEEEeCCHHHHH
Q 022077 159 WASFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQL 230 (303)
Q Consensus 159 ~~~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~A~ 230 (303)
-+.....+. ........|.+++||+.++++||.++|+ -.-.|.. +.++.+ ..+++.|.|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeecc-CCCCcccceEEEecCHHHHH
Confidence 554332221 1124567899999999999999999997 3333333 334444 36788999999999999999
Q ss_pred HHHHHhCCceeCCeeeEEeeccc
Q 022077 231 RAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 231 ~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
+|+.. |...|+.|.|.|.-+..
T Consensus 160 ~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 160 IALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHH-HHHhhccceEEeehhHH
Confidence 99986 77888999998876543
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=3e-18 Score=154.62 Aligned_cols=201 Identities=17% Similarity=0.241 Sum_probs=150.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...+.++|+|||..+..++|...|..||.|..+.+.... + .++|+|.+..+|..|.+.|....+ ....+.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G-~-----~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG-T-----GAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCccc-c-----eeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 445789999999999999999999999999888444222 1 599999999999999999988877 45555555
Q ss_pred ecCCCCCC-----------------------------------C-----------CCCCCCceEEEcCCCcccCHHHHHH
Q 022077 159 WASFGAGE-----------------------------------K-----------RDDTPDHTIFVGDLAADVTDYMLQE 192 (303)
Q Consensus 159 ~~~~~~~~-----------------------------------~-----------~~~~~~~~l~v~nl~~~~~~~~l~~ 192 (303)
|+...... . ......++|||.||.++++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 54211000 0 0011223399999999999999999
Q ss_pred HHhhhCCCcceEEEEeeCCCC---CceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCCccccCCCCcc
Q 022077 193 TFRARYPSTKGAKVVIDRLTG---RTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQ 269 (303)
Q Consensus 193 ~f~~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 269 (303)
+|+ .+|.|.++.|...+... .+.|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..+......
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--------- 604 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--------- 604 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc---------
Confidence 998 99999999888765321 24599999999999999999999999999999999999833221110
Q ss_pred CccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 270 NSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
.........|+|+|.|+. .++ .+|+++|
T Consensus 605 ----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF 634 (725)
T KOG0110|consen 605 ----KKKSKKKKGTKILVRNIPFEATKREVRKLF 634 (725)
T ss_pred ----cccccccccceeeeeccchHHHHHHHHHHH
Confidence 011111125799999554 788 7777766
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=3.9e-17 Score=135.91 Aligned_cols=173 Identities=16% Similarity=0.293 Sum_probs=141.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
+.....|||.|||.++|.+++.++|++||.|.. |++.++.. |..+|-|+|.|-..+++..|+..|++..+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~- 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL- 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc-
Confidence 445567999999999999999999999998754 78888884 99999999999999999999999999999
Q ss_pred CCCceeEeeecCCCCCC----------------------------------CCCCCCCceEEEcCCCc----ccC-----
Q 022077 150 NGEQNFRLNWASFGAGE----------------------------------KRDDTPDHTIFVGDLAA----DVT----- 186 (303)
Q Consensus 150 ~~~~~i~v~~~~~~~~~----------------------------------~~~~~~~~~l~v~nl~~----~~~----- 186 (303)
+|+.++|..|.+.... .......++|.|.|+=. ..+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 8999999987543110 01124457888888732 112
Q ss_pred --HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 187 --DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 187 --~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
+++|++.++ +||.|.+|.|.- ..+.|.+.|.|.+.++|..|+..|+|+.|+||.|.......+....
T Consensus 288 dlkedl~eec~-K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 288 DLKEDLTEECE-KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred HHHHHHHHHHH-HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 467888898 999999987752 3457889999999999999999999999999999998887665443
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=5.9e-17 Score=123.46 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=125.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||||||.++-+.+|+++|.+||.|..|.+.... ..-.||||+|++..+|+.||..-+|..+ .+..++|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccccc--CcceEEEE
Confidence 467899999999999999999999999999998875432 3446999999999999999999999988 67888888
Q ss_pred ecCCCCCCC----------------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCce
Q 022077 159 WASFGAGEK----------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK 216 (303)
Q Consensus 159 ~~~~~~~~~----------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~ 216 (303)
++....... ........+.|.+||.+-+..||++++. .-|.|....+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 775432111 1112335699999999999999999998 9999998888776
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 217 GYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 217 g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
|.+.|+|-+.|+-+-|+..|+...+.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 37899999999999999999877654
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.74 E-value=1.1e-16 Score=135.91 Aligned_cols=213 Identities=15% Similarity=0.248 Sum_probs=162.2
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..--.++|+|+-.-++-|-|..+|++||.|..|.-.... + .-.|+|+|.+.+.|..|...|+|+.|..+...+|++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-n---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-N---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc-c---chhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 344578899999999999999999999999876554322 2 236899999999999999999999999889999998
Q ss_pred ecCCC-------CCCC--------------------------------------------------CCCCC--CceEEEc
Q 022077 159 WASFG-------AGEK--------------------------------------------------RDDTP--DHTIFVG 179 (303)
Q Consensus 159 ~~~~~-------~~~~--------------------------------------------------~~~~~--~~~l~v~ 179 (303)
+++.. ...+ +.... ...|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 87532 0000 00111 4678888
Q ss_pred CCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 180 DLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 180 nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
||.. .+|.+.|..+|+ .||.|.+|+|++.+ +.-|+|+|.+...|.-|++.|+|..+.|+.|+|.+++-....-
T Consensus 304 nln~~~VT~d~LftlFg-vYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFG-VYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHHh-hhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 8876 589999999998 99999999999886 3569999999999999999999999999999999999876543
Q ss_pred CccccCCCCcc--------------CccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 259 GQQQYPKASYQ--------------NSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 259 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
..+..+.+.++ ..++..++.++. .||++.+++ .++ |++.+.|.
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Pps-atlHlsnip~svsee~lk~~f~ 436 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPS-ATLHLSNIPPSVSEEDLKNLFQ 436 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCch-hheeeccCCcccchhHHHHhhh
Confidence 33322222111 122223344444 689998776 788 88887774
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.6e-17 Score=126.34 Aligned_cols=84 Identities=31% Similarity=0.542 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||++++|+++|+++|++||.|.++.++.++.+++++|||||+|++.++|++|++.|++..| .++.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 998754
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=6.3e-16 Score=132.34 Aligned_cols=174 Identities=17% Similarity=0.296 Sum_probs=142.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHh-hcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...+.+||.|||++..+.+|+++|. +-|+|+.|.+..|. +|+++|||.|+|++.+.+++|++.||...+ .++.++|
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~v 118 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVV 118 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEE
Confidence 3446699999999999999999996 57889999999998 699999999999999999999999999998 5666665
Q ss_pred eecCCC---------------------------------------------CCCC---C---------------------
Q 022077 158 NWASFG---------------------------------------------AGEK---R--------------------- 168 (303)
Q Consensus 158 ~~~~~~---------------------------------------------~~~~---~--------------------- 168 (303)
.-.... ..+. +
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 422100 0000 0
Q ss_pred ------------CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 169 ------------DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 169 ------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
......++||+||.+.+..+.|++.|. ..|.|..+.+-.|+ .|.++|+|.++|+..-+|..|+..|
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhh
Confidence 012346789999999999999999998 99999999999897 5688999999999999999999999
Q ss_pred CCceeCCeeeEEeecccCCCC
Q 022077 237 NGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~~~~ 257 (303)
++.-+..++..++..+--++.
T Consensus 277 ~~~g~~~~~~~~Rl~~~~Drn 297 (608)
T KOG4212|consen 277 DRQGLFDRRMTVRLDRIPDRN 297 (608)
T ss_pred ccCCCccccceeecccccccc
Confidence 987777888888875554444
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=3.4e-17 Score=130.82 Aligned_cols=151 Identities=19% Similarity=0.371 Sum_probs=126.3
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
..+|||+|++.+.+.+|..+|..||.+.++.+.. ||+||+|++..+|..|+..|++..+.+ ..+.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~--e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCG--ERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecc--eeeeeeccc
Confidence 4689999999999999999999999998887653 489999999999999999999999954 337888876
Q ss_pred CC------CC-------C---CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCC
Q 022077 162 FG------AG-------E---KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (303)
Q Consensus 162 ~~------~~-------~---~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 225 (303)
.. .. . .......+.|.|.++...+.+.+|.+.|. .+|.+.+..+ ..+++||+|++
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 31 11 0 01134457789999999999999999998 9999965544 25689999999
Q ss_pred HHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 226 ESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 226 ~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
.++|.+|+..|+|..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=5.4e-16 Score=131.70 Aligned_cols=161 Identities=15% Similarity=0.245 Sum_probs=133.6
Q ss_pred cceEEEcCCC-ccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 81 IRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 81 ~~~l~v~nLp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
.+.|.|.||. ..+|.+.|..+|+-||.|..|+++.++.. -|+|+|.+...|..|++.|+|..+ .++.+++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhccee--cCceEEEee
Confidence 6789999996 68899999999999999999999998753 699999999999999999999999 668899888
Q ss_pred cCCCCCCC-------------------------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEe
Q 022077 160 ASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVI 208 (303)
Q Consensus 160 ~~~~~~~~-------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~ 208 (303)
++.....- -...++.+|++.|+|.++++|++++.|. .-|..++.....
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~-~~g~~vkafkff 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQ-EPGGQVKAFKFF 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhh-cCCceEEeeeec
Confidence 76431110 0125677999999999999999999998 555554443332
Q ss_pred eCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEeeccc
Q 022077 209 DRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-PMRIGPATN 253 (303)
Q Consensus 209 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~~~~ 253 (303)
++.+.+|++.+++.|+|..|+..+|.+.+++. .+||+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 33467999999999999999999999998765 899999875
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=2.1e-16 Score=106.51 Aligned_cols=70 Identities=34% Similarity=0.659 Sum_probs=67.1
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
|||+|||.++++++|+++|+ .||.|..+.+..+ .++..+++|||+|++.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999998 9999999999998 5788999999999999999999999999999999986
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.6e-16 Score=126.35 Aligned_cols=84 Identities=25% Similarity=0.409 Sum_probs=80.6
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|.|.||+.++++++|+++|. .||.|.++.|.+|+.||.++|||||.|++.++|.+||..|||.-++.-.|+|.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34678899999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 022077 250 PATNK 254 (303)
Q Consensus 250 ~~~~~ 254 (303)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.6e-15 Score=125.95 Aligned_cols=170 Identities=18% Similarity=0.289 Sum_probs=135.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...-.+|||..+..+.+++||+..|+.||.|.+|.+.++...+..+||+|++|.+......|+..+|-..+ +|..++|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRV 284 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRV 284 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEec
Confidence 34567999999999999999999999999999999999998889999999999999999999988887666 7888888
Q ss_pred eecCCCCCC-----------------------------------------------------------------------
Q 022077 158 NWASFGAGE----------------------------------------------------------------------- 166 (303)
Q Consensus 158 ~~~~~~~~~----------------------------------------------------------------------- 166 (303)
..+-.....
T Consensus 285 Gk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgv 364 (544)
T KOG0124|consen 285 GKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGV 364 (544)
T ss_pred ccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCce
Confidence 644211000
Q ss_pred ---------------------------------------C------------------------------------CCCC
Q 022077 167 ---------------------------------------K------------------------------------RDDT 171 (303)
Q Consensus 167 ---------------------------------------~------------------------------------~~~~ 171 (303)
+ ....
T Consensus 365 i~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~ 444 (544)
T KOG0124|consen 365 ITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQ 444 (544)
T ss_pred eccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccc
Confidence 0 0024
Q ss_pred CCceEEEcCC--CcccC---HHHHHHHHhhhCCCcceEEEEeeCCCCCc----eeEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 172 PDHTIFVGDL--AADVT---DYMLQETFRARYPSTKGAKVVIDRLTGRT----KGYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 172 ~~~~l~v~nl--~~~~~---~~~l~~~f~~~~G~i~~~~i~~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
.++.+.++|. |.+++ +.+|.+.|+ +||.|.++.|...+.++.- ---.||+|....++.+|+..|+|+.|+
T Consensus 445 ~S~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFg 523 (544)
T KOG0124|consen 445 ESTVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFG 523 (544)
T ss_pred cCcEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceec
Confidence 4567778886 44444 568999998 9999999988877644321 124799999999999999999999999
Q ss_pred CeeeEEee
Q 022077 243 TRPMRIGP 250 (303)
Q Consensus 243 g~~l~v~~ 250 (303)
||++....
T Consensus 524 Gr~VvAE~ 531 (544)
T KOG0124|consen 524 GRKVVAEV 531 (544)
T ss_pred Cceeehhh
Confidence 99987654
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.3e-16 Score=129.54 Aligned_cols=86 Identities=19% Similarity=0.403 Sum_probs=78.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|+|.|||+.+.+-||+.+|. +||.|.+|.|+.+. ..+|||+||+|++.+||++|..+|||..|.||+|+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~-kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFE-KFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHH-hhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3445568999999999999999999998 99999999999884 55799999999999999999999999999999999
Q ss_pred EeecccCCC
Q 022077 248 IGPATNKKT 256 (303)
Q Consensus 248 v~~~~~~~~ 256 (303)
|+.++.+-.
T Consensus 168 Vn~ATarV~ 176 (376)
T KOG0125|consen 168 VNNATARVH 176 (376)
T ss_pred Eeccchhhc
Confidence 999988743
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=3.3e-16 Score=124.18 Aligned_cols=82 Identities=34% Similarity=0.478 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
+..-++||||+|++.+..|+|+++|+ +||+|+++.|+.|+.+|++|||+||+|.+.++|.+|++. -+-.|+||+..|+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFe-qfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFE-QFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHH-HhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 34457899999999999999999998 999999999999999999999999999999999999985 3367999999999
Q ss_pred eccc
Q 022077 250 PATN 253 (303)
Q Consensus 250 ~~~~ 253 (303)
++.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8776
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.9e-16 Score=110.64 Aligned_cols=82 Identities=22% Similarity=0.505 Sum_probs=76.7
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...+++||||||+.-++|++|.++|+++|.|..|.|=.|+.+....|||||+|.+.++|..|++.++|..+ ..+.|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 45789999999999999999999999999999999999998889999999999999999999999999999 7888888
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
+|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8864
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=5.1e-17 Score=123.52 Aligned_cols=111 Identities=21% Similarity=0.402 Sum_probs=92.8
Q ss_pred HHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeE
Q 022077 139 VLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (303)
Q Consensus 139 a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~ 218 (303)
-+..||.+.+.. |..-+.+|.. ....+.-||||||++++|+.||..+|+ +||+|++|.+++|+.||+++||
T Consensus 9 ~i~~lne~Elq~-g~~~~~SWH~-------~YkdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGF 79 (219)
T KOG0126|consen 9 NIQKLNERELQL-GIADKKSWHQ-------EYKDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGF 79 (219)
T ss_pred HHHHhhHHhhcc-ccccccchhh-------hcccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccce
Confidence 345566666542 2222556653 334567899999999999999999999 9999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 219 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
||+.|++.-+..-|+..|||..|.||.|+|.+....+...
T Consensus 80 aFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk 119 (219)
T KOG0126|consen 80 AFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPK 119 (219)
T ss_pred EEEEecCccceEEEEeccCCceecceeEEeeecccccCCc
Confidence 9999999999999999999999999999999877665553
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.1e-15 Score=120.08 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=78.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
..++.++|-|.||+.++++++|+++|..||.|..+.+.+|+.||.++|||||.|.++++|.+||+.|||.-+ ....++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999999998 778899
Q ss_pred eeecCC
Q 022077 157 LNWASF 162 (303)
Q Consensus 157 v~~~~~ 162 (303)
|.|+..
T Consensus 263 vEwskP 268 (270)
T KOG0122|consen 263 VEWSKP 268 (270)
T ss_pred EEecCC
Confidence 999874
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3.6e-15 Score=132.95 Aligned_cols=176 Identities=17% Similarity=0.363 Sum_probs=138.5
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.......+||++|+..++++++++++..||.+....++.+..+|-++||||.+|.+...+..|+..|||+.+ ++..+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lv 362 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLV 362 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh--cCceeE
Confidence 345567899999999999999999999999999999999999999999999999999999999999999999 666666
Q ss_pred eeecCCCCCC--------------------CCCCCCCceEEEcCCC--ccc------C--HHHHHHHHhhhCCCcceEEE
Q 022077 157 LNWASFGAGE--------------------KRDDTPDHTIFVGDLA--ADV------T--DYMLQETFRARYPSTKGAKV 206 (303)
Q Consensus 157 v~~~~~~~~~--------------------~~~~~~~~~l~v~nl~--~~~------~--~~~l~~~f~~~~G~i~~~~i 206 (303)
+..+...... .....++..|.+.|+= .++ + .|+++..|+ +||.|.+|.|
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~i 441 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEI 441 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEec
Confidence 6655322110 1112334455555541 111 1 256777787 8999999999
Q ss_pred EeeCCC---CCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCC
Q 022077 207 VIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 207 ~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 255 (303)
.++... .-..|..||+|.+.+++++|...|+|.+|+||.|...|-...+
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 888322 2345789999999999999999999999999999999876543
No 58
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.1e-14 Score=127.65 Aligned_cols=171 Identities=20% Similarity=0.311 Sum_probs=125.6
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecC-CCC--Cccc---EEEEEEccHHHHHHHHHHhCCCC---
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTG--QIEG---YGFIEFISRAGAERVLQTFNGTP--- 147 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~--~~~g---~afv~f~~~~~a~~a~~~l~g~~--- 147 (303)
...-+++||||+||++++|+.|...|..||.+. +...+.. ..+ -.+| |+|+.|+++..+..-+.+..-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 445578999999999999999999999999864 3333211 111 3455 99999999988877665432210
Q ss_pred -CC-----CCC-----ceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCce
Q 022077 148 -MP-----NGE-----QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTK 216 (303)
Q Consensus 148 -~~-----~~~-----~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~ 216 (303)
|. .+. +.+.+.-+..-......-.+.+|||||+||.-++.++|..+|.+.||.|..+.|-.|.+-+..+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 00 011 1122222222222345567889999999999999999999999899999999999998889999
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCC
Q 022077 217 GYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 217 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
|-|-|+|.+..+-.+||.+ +.|.|...+-.++
T Consensus 414 GaGRVtFsnqqsYi~AIsa--------rFvql~h~d~~KR 445 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA--------RFVQLDHTDIDKR 445 (520)
T ss_pred CcceeeecccHHHHHHHhh--------heEEEecccccee
Confidence 9999999999999999985 6666666555543
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=2.6e-15 Score=101.12 Aligned_cols=70 Identities=34% Similarity=0.669 Sum_probs=64.9
Q ss_pred EEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 84 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
|||+|||.++|+++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 799999999999999999999999999999998 5789999999999999999999999999998 566554
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=3.6e-15 Score=100.51 Aligned_cols=70 Identities=24% Similarity=0.556 Sum_probs=64.8
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
|||+|||.++++++|+++|+ .||.|..+++..++. +..+++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999998 999999999999976 89999999999999999999999999999999885
No 61
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=5.2e-15 Score=121.06 Aligned_cols=90 Identities=24% Similarity=0.481 Sum_probs=83.7
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
....+-+||||+-|+++++|.+|+..|+ .||.|+.|+|+.|..||+++|||||+|++.-+-..|.+..+|..|+|+.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 4457889999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.+-+.+...+
T Consensus 175 VDvERgRTvkg 185 (335)
T KOG0113|consen 175 VDVERGRTVKG 185 (335)
T ss_pred EEecccccccc
Confidence 99877665443
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.7e-15 Score=107.64 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..+++|||+||+..++||+|.++|+ +.|.|..|.+-.|+.+....|||||+|.+.++|..|++-++|..++.+.|++.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3468999999999999999999999 999999999889988888899999999999999999999999999999999998
Q ss_pred ccc
Q 022077 251 ATN 253 (303)
Q Consensus 251 ~~~ 253 (303)
.-.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 543
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.9e-15 Score=118.86 Aligned_cols=81 Identities=27% Similarity=0.482 Sum_probs=69.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..-++||||+|+|.+.+++|+++|++||+|++..++.|+.+|++||||||+|.+.+.|.+|++. -.-.| .||...++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piI--dGR~aNcn 86 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPII--DGRKANCN 86 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcc--cccccccc
Confidence 3457899999999999999999999999999999999999999999999999999999999964 33345 45555556
Q ss_pred ecCC
Q 022077 159 WASF 162 (303)
Q Consensus 159 ~~~~ 162 (303)
.+..
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 5554
No 64
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.6e-15 Score=107.38 Aligned_cols=89 Identities=22% Similarity=0.327 Sum_probs=82.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.......|||.++....++++|.+.|. .||.|+++.+..|+.+|..+|||+|+|++.++|++|+..|||..+-|..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 345578899999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCC
Q 022077 249 GPATNKKTVS 258 (303)
Q Consensus 249 ~~~~~~~~~~ 258 (303)
.|+..+....
T Consensus 147 Dw~Fv~gp~~ 156 (170)
T KOG0130|consen 147 DWCFVKGPER 156 (170)
T ss_pred EEEEecCCcc
Confidence 9988776543
No 65
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=2.7e-14 Score=122.53 Aligned_cols=150 Identities=23% Similarity=0.368 Sum_probs=117.6
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
.++|||+||+.++|+++|+++|..||.+..+.+..++.+++++|||||+|.+.++|..|+..++|..+ .++.++|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999 7788888874
Q ss_pred C----CCCCC----------------CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEE
Q 022077 161 S----FGAGE----------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF 220 (303)
Q Consensus 161 ~----~~~~~----------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~af 220 (303)
. ..... .........+++.+++..+...++...|. .+|.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 3 11111 12234567799999999999999999998 999997766665543332333333
Q ss_pred EEeCCHHHHHHHH
Q 022077 221 VRFGDESEQLRAM 233 (303)
Q Consensus 221 V~f~~~~~A~~A~ 233 (303)
+.+.....+....
T Consensus 272 ~~~~~~~~~~~~~ 284 (306)
T COG0724 272 VGNEASKDALESN 284 (306)
T ss_pred cchhHHHhhhhhh
Confidence 4444444444443
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.4e-15 Score=111.61 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=73.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
-.++|||+||+..+++.||..+|. .||.|.+|.|...+ .|||||+|++.-+|+.|+..|+|+.|+|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 468999999999999999999998 99999999887754 899999999999999999999999999999999998
Q ss_pred ccCCC
Q 022077 252 TNKKT 256 (303)
Q Consensus 252 ~~~~~ 256 (303)
+.+..
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87654
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=119.37 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
.++|||+||++.+++++|+++|+ .||.|++|+|..+.. .+|||||+|++.++|..|+. |||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 47999999999999999999998 999999999998853 47899999999999999995 99999999999999987
Q ss_pred cCC
Q 022077 253 NKK 255 (303)
Q Consensus 253 ~~~ 255 (303)
.-.
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=4.5e-15 Score=120.98 Aligned_cols=95 Identities=20% Similarity=0.365 Sum_probs=84.2
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
.+|||||||...++.+|+.+|+ +||+|.+|.|++ .||||..++...|..|+..|||..|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe-~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFE-QYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHH-hhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 4799999999999999999998 999999999984 4899999999999999999999999999999998887
Q ss_pred CCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 254 KKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
|.. -.|+|+|||+. .++ +|++..|
T Consensus 74 Ksk------------------------~stkl~vgNis~tctn~ElRa~f 99 (346)
T KOG0109|consen 74 KSK------------------------ASTKLHVGNISPTCTNQELRAKF 99 (346)
T ss_pred cCC------------------------CccccccCCCCccccCHHHhhhh
Confidence 721 24799999887 566 8877766
No 69
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.55 E-value=1.9e-14 Score=127.74 Aligned_cols=85 Identities=31% Similarity=0.534 Sum_probs=81.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
+.+||||+++++++++|.++|+ ..|.|.+++++.|+++|+.+|||||+|.+.++|.+|++.|||.+++||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999998 999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 022077 254 KKTVSG 259 (303)
Q Consensus 254 ~~~~~~ 259 (303)
.+.++.
T Consensus 98 ~~~~~~ 103 (435)
T KOG0108|consen 98 RKNAER 103 (435)
T ss_pred cchhHH
Confidence 776543
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.5e-15 Score=116.30 Aligned_cols=90 Identities=28% Similarity=0.496 Sum_probs=84.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++||||+|-.++++.-|...|- .||.|+.|.+..|..+++.+|||||+|+..|+|..|+..||+.++.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4568999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcc
Q 022077 251 ATNKKTVSGQQ 261 (303)
Q Consensus 251 ~~~~~~~~~~~ 261 (303)
+++.+..+..+
T Consensus 87 AkP~kikegsq 97 (298)
T KOG0111|consen 87 AKPEKIKEGSQ 97 (298)
T ss_pred cCCccccCCCC
Confidence 99988776644
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=113.03 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.....|.|-||-+.++.++|+.+|+ +||.|.+|.|.+|.-|+.++|||||.|....+|+.|++.|+|.+|+|+.|+|.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFe-kYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFE-KYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHH-HhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3456799999999999999999998 999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCC
Q 022077 251 ATNKKT 256 (303)
Q Consensus 251 ~~~~~~ 256 (303)
++-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 876554
No 72
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=110.97 Aligned_cols=82 Identities=30% Similarity=0.496 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
.....+|||+||+..++++.|.++|- +.|.|.++++.+|+.++..+|||||+|.++|+|+-|++.||...+.|+.|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34568999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 022077 250 PAT 252 (303)
Q Consensus 250 ~~~ 252 (303)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.2e-14 Score=97.72 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....+.|||+|||+.+|.|++.++|. +||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+.++.+.|-
T Consensus 15 pevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34567899999999999999999998 99999999996654 337899999999999999999999999999999999
Q ss_pred ecccCCC
Q 022077 250 PATNKKT 256 (303)
Q Consensus 250 ~~~~~~~ 256 (303)
|..+.+.
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 9876543
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=3.7e-13 Score=115.59 Aligned_cols=75 Identities=28% Similarity=0.354 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|+|+|||.++|...|++-|. .||.|.++.|+. .|+++| .|.|.+.++|++|+..|+|..+.||.|+|.|
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfr-e~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFR-EIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHH-hccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3457899999999999999999998 999999999843 466675 8999999999999999999999999999987
Q ss_pred c
Q 022077 251 A 251 (303)
Q Consensus 251 ~ 251 (303)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=4e-14 Score=95.38 Aligned_cols=69 Identities=33% Similarity=0.594 Sum_probs=62.4
Q ss_pred EEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 84 LWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 84 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
|||+|||+++++++|+++|+.+|.|..+.+..++. ++.+|+|||+|.+.++|.+|++.++|..+ +|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEc
Confidence 79999999999999999999999999999999986 89999999999999999999999988888 56655
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=107.56 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++||||||+..+++.||+..|..||.+.+++|.++. -|||||+|++..+|+.|+..|+|..| .+..++|.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 346899999999999999999999999999999998865 37999999999999999999999999 78888888
Q ss_pred ecCCCC
Q 022077 159 WASFGA 164 (303)
Q Consensus 159 ~~~~~~ 164 (303)
.+.-..
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 876443
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=3.6e-12 Score=107.53 Aligned_cols=171 Identities=20% Similarity=0.244 Sum_probs=130.9
Q ss_pred CCCCcceEEEcCCC-ccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 77 QPGEIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 77 ~~~~~~~l~v~nLp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
....++.++|-+|. ..++.+.|.++|+.||.|..|++++.+. |-|.|++.+..+.++|+..||+..+.|....+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 34567899999997 5678899999999999999999999873 58999999999999999999999995444444
Q ss_pred EeeecCCC-------------------------------CCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceE
Q 022077 156 RLNWASFG-------------------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (303)
Q Consensus 156 ~v~~~~~~-------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~ 204 (303)
.++....- ..+.+...++++|+.-|.|..++||.|.++|.++--...++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 44321100 11123357789999999999999999999998544445667
Q ss_pred EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe------eeEEeecccC
Q 022077 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR------PMRIGPATNK 254 (303)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~------~l~v~~~~~~ 254 (303)
+|+..+ +.+ ...+++||++.++|..||..||-..+.+. .|++-|+.++
T Consensus 438 kvFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 438 KVFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred Eeeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 777665 333 33589999999999999999998887552 3555555554
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=5.7e-14 Score=122.28 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH--HHHHHHHHHhCCceeCCeeeE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE--SEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.....+||||||.+.+++++|...|+ .||.|.+|.|++. +| +|||||+|.+. +++.+||..|||.++.|+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34567899999999999999999998 9999999999944 66 99999999987 789999999999999999999
Q ss_pred EeecccC
Q 022077 248 IGPATNK 254 (303)
Q Consensus 248 v~~~~~~ 254 (303)
|..+++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999885
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=1.4e-13 Score=92.62 Aligned_cols=72 Identities=36% Similarity=0.696 Sum_probs=67.1
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
+|+|+||+..+++++|+++|+ .||.|.++.+..+. +.++++|||+|.+.++|.+|+..++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999998 99999999998875 6778999999999999999999999999999999874
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.51 E-value=5.3e-13 Score=112.47 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=138.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...+-.|-|++|-..++|.+|.+.++.||.|..+..+..++ .|+|+|++.+.|++++..-....+...+...-+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhc
Confidence 44567899999999999999999999999998887777653 799999999999999865555555556666667
Q ss_pred eecCCCCCCC---CCCCCCceEEEcCC--CcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHH
Q 022077 158 NWASFGAGEK---RDDTPDHTIFVGDL--AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 158 ~~~~~~~~~~---~~~~~~~~l~v~nl--~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 232 (303)
++++.....+ ....+.+.|.+.-| -+.++-+-|..++. ..|.|.+|.|++. +|. .|+|||++.+.|++|
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRA 175 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEEEec--cce---eeEEeechhHHHHHH
Confidence 7775443333 23344555555544 45789999999998 9999999998866 333 699999999999999
Q ss_pred HHHhCCcee--CCeeeEEeecccCCCCCCccccCCCCcc
Q 022077 233 MTEMNGVFC--STRPMRIGPATNKKTVSGQQQYPKASYQ 269 (303)
Q Consensus 233 ~~~l~g~~~--~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 269 (303)
...|||..| +-..|+|+|+++.+.+-.++....-.|+
T Consensus 176 k~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyT 214 (494)
T KOG1456|consen 176 KAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYT 214 (494)
T ss_pred HhhcccccccccceeEEEEecCcceeeeeecCCcccccc
Confidence 999999997 4578999999998876544433333333
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.9e-15 Score=114.99 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=76.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..+.-|||||||...||.+|..+|++||.|++|.++||+.||+++||||+.|++......|+..|||..| .++.|+|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 88999998
Q ss_pred ecC
Q 022077 159 WAS 161 (303)
Q Consensus 159 ~~~ 161 (303)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 654
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.50 E-value=2.8e-13 Score=108.63 Aligned_cols=171 Identities=28% Similarity=0.465 Sum_probs=133.7
Q ss_pred cceEEEcCCCccCCHHH-H--HHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 81 IRTLWIGDLQYWMDETY-L--NTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~-l--~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++++++-..+..+- | ...|+.+-.+...++.+++ -+.-.+++|+.|.....-.++-..-+++.+ +...|++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 34556666665555554 3 5567766666667777766 356678999999988777777665566666 5666777
Q ss_pred eecCCCCCCC--CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 158 NWASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 158 ~~~~~~~~~~--~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
...+...... .-.....+||.|.|..+++++.|...|+ +|-.....++++|+.+|+++||+||.|.+.+++.+|+..
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 6555432222 2345678999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hCCceeCCeeeEEeecccCC
Q 022077 236 MNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 236 l~g~~~~g~~l~v~~~~~~~ 255 (303)
|+|+.++.+.|+++-+.-+.
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999987766555
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=112.91 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=69.2
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
.++|||+||++.+|+++|+++|+.||.|.+|.+.+++. .+|||||+|++.++|+.|+ .|+|..| .++.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998863 4689999999999999999 5999999 8899999987
Q ss_pred C
Q 022077 161 S 161 (303)
Q Consensus 161 ~ 161 (303)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 5
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.6e-13 Score=92.01 Aligned_cols=71 Identities=34% Similarity=0.653 Sum_probs=66.8
Q ss_pred EcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 178 VGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 178 v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
|+||+..+++++|+++|+ .||.|.++.+..+..++.++|+|||+|.+.++|.+|+..|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999998 99999999999988778899999999999999999999999999999999874
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.7e-14 Score=101.39 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+.+.-.|||.++...+|+++|.+.|+.||.|+.+++..|+.||-.+|||+|+|++..+|.+|++.+||..+ .+..+.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999 7888999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
+|+-..
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 998644
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=4.4e-13 Score=111.23 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=76.0
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
.+.+..++|+|+|||+..-|-||+.+|.+||.|.+|.|+.+. ..+||||||+|++.++|++|.++|+|..+ .||.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV--EGRKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee--eceEE
Confidence 344566899999999999999999999999999999999985 35899999999999999999999999999 78889
Q ss_pred EeeecCCC
Q 022077 156 RLNWASFG 163 (303)
Q Consensus 156 ~v~~~~~~ 163 (303)
.|+.++..
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99888755
No 87
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.1e-13 Score=115.17 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=127.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhc----CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHT----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
.....|..++||+++|+.++.++|..- |....+.++... +|+..|-|||.|..+++|..|+.+ +...| +.|.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNI--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHH--hHHH
Confidence 344567788999999999999999632 234455555544 689999999999999999999964 44444 4455
Q ss_pred eEeeecCCC---------------------------CCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcc-e--E
Q 022077 155 FRLNWASFG---------------------------AGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK-G--A 204 (303)
Q Consensus 155 i~v~~~~~~---------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~-~--~ 204 (303)
|.+.+++.. ...-.......+|.+++||++.+.|||.++|. .|-.-. . |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhccccee
Confidence 554433210 00012234467899999999999999999997 675533 2 5
Q ss_pred EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
.++.+. .|+..|.|||+|.+.|+|..|....|++...+|.|.|--+.-.
T Consensus 314 Hmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 314 HMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 666664 6888999999999999999999999999899999999876543
No 88
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.5e-13 Score=109.80 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=73.7
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
..+.-+||||+-|+.+++|+.|+..|+.||.|+.|.+++++.||+++|||||+|++..+...|.+..+|..|++....|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999954444444
Q ss_pred ee
Q 022077 157 LN 158 (303)
Q Consensus 157 v~ 158 (303)
+.
T Consensus 177 vE 178 (335)
T KOG0113|consen 177 VE 178 (335)
T ss_pred ec
Confidence 43
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=9.9e-14 Score=123.17 Aligned_cols=80 Identities=29% Similarity=0.618 Sum_probs=77.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
+.|||||+|+++++++|.++|+..|.|.+++++.|+.||+.+||||++|.+.++|.+|++.|||..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 89999999986
Q ss_pred CC
Q 022077 162 FG 163 (303)
Q Consensus 162 ~~ 163 (303)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 43
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=6.1e-13 Score=107.55 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=70.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
.+.+|||+||+..+++++|+++|+ .||.|.+|+|++|. ..+++|||+|++.++|..|+ .|+|..|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 457999999999999999999998 99999999999884 44679999999999999998 58999999999999876
Q ss_pred cc
Q 022077 252 TN 253 (303)
Q Consensus 252 ~~ 253 (303)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=8.9e-13 Score=113.05 Aligned_cols=80 Identities=38% Similarity=0.675 Sum_probs=77.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
..+|||+||+..+++++|.++|. .||.|..+.+..++.+++++|+|||+|.+.++|..|+..++|..+.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 69999999999999999999998 99999999999998899999999999999999999999999999999999999976
Q ss_pred c
Q 022077 253 N 253 (303)
Q Consensus 253 ~ 253 (303)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=5.3e-13 Score=116.36 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccH--HHHHHHHHHhCCCCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISR--AGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
....+||||||.+.+|+++|+.+|+.||.|.++.|++. +| +|||||+|.+. .++.+||..|||..+ .|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 34578999999999999999999999999999999954 56 89999999987 789999999999999 788899
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|..+.
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 88774
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=5.6e-13 Score=119.05 Aligned_cols=174 Identities=21% Similarity=0.368 Sum_probs=138.3
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhc-----------CC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHT-----------GE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 144 (303)
.....+.++|++++..++++.+..+|..- |. +..+.+...+ .+||++|.+.++|..|+ .++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-ccc
Confidence 34567899999999999999999998654 22 5556665554 49999999999999998 467
Q ss_pred CCCCCCCCceeEeeecCC-------------------CCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEE
Q 022077 145 GTPMPNGEQNFRLNWASF-------------------GAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (303)
Q Consensus 145 g~~~~~~~~~i~v~~~~~-------------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~ 205 (303)
+..+ .+..+++..-.. ............+++|++|+..++++++++++. .||.+....
T Consensus 244 ~~~f--~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~-~fg~lk~f~ 320 (500)
T KOG0120|consen 244 GIIF--EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD-SFGPLKAFR 320 (500)
T ss_pred chhh--CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH-hcccchhhe
Confidence 7666 444444332110 001112234456799999999999999999997 999999999
Q ss_pred EEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCCc
Q 022077 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQ 260 (303)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 260 (303)
++.+..+|.++||||.+|.+......|+..|||..++++.|.|..+.........
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~ 375 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANV 375 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccc
Confidence 9999999999999999999999999999999999999999999998877655443
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=1.7e-12 Score=87.78 Aligned_cols=74 Identities=36% Similarity=0.668 Sum_probs=68.4
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
+|+|+||+..+++++|+++|+ .||.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999998 9999999999987643 6689999999999999999999999999999999875
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=7.7e-13 Score=84.82 Aligned_cols=56 Identities=25% Similarity=0.563 Sum_probs=50.6
Q ss_pred HHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 190 LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 190 l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
|+++|+ +||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678998 99999999987653 589999999999999999999999999999999986
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.3e-12 Score=105.77 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=67.6
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...+|||+||++.+|+++|+++|+.||.|.+|+++++. +.+++|||+|++.++|+.|+ .|+|..| .++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 45899999999999999999999999999999999985 44579999999999999999 6999999 667777765
Q ss_pred cC
Q 022077 160 AS 161 (303)
Q Consensus 160 ~~ 161 (303)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 43
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=4.5e-13 Score=104.23 Aligned_cols=86 Identities=24% Similarity=0.465 Sum_probs=78.8
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
+-+...+|-|-||-..++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.|+++|+|..+ .|+.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 345667899999999999999999999999999999999999999999999999999999999999999999 678888
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|..+....
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 88776543
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.1e-13 Score=106.09 Aligned_cols=86 Identities=22% Similarity=0.396 Sum_probs=80.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++||||+|...+|+.-|...|-.||.|.+|++..|..+++.+|||||+|+..++|..|+..+|+..+ .|+.|+|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred ecCCCCCC
Q 022077 159 WASFGAGE 166 (303)
Q Consensus 159 ~~~~~~~~ 166 (303)
++......
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99765443
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.1e-12 Score=88.57 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.+...+.|||.|||.++|.+++.++|.+||.|..+++-..+ ..+|-|||.|++..+|++|++.|+|..+ .++.+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~ 88 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLV 88 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCceEE
Confidence 34567889999999999999999999999999998886655 4578999999999999999999999998 778877
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.+-.
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 77654
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.7e-12 Score=86.22 Aligned_cols=71 Identities=32% Similarity=0.640 Sum_probs=64.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+|||+||+..+++++|+++|..||.+..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+ .++.+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 58999999999999999999999999999998876 67889999999999999999999999888 5566554
No 101
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=2.2e-12 Score=86.59 Aligned_cols=62 Identities=18% Similarity=0.419 Sum_probs=53.1
Q ss_pred HHHHHHHH----hhhCCCcceEE-EEeeCCC--CCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 187 DYMLQETF----RARYPSTKGAK-VVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 187 ~~~l~~~f----~~~~G~i~~~~-i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
+++|+++| + .||.|.++. |..+..+ +.++|+|||+|++.++|.+|+..|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~-~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEE-YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHH-hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 34555555 3 899999995 7777666 8899999999999999999999999999999999873
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3.8e-12 Score=85.18 Aligned_cols=70 Identities=30% Similarity=0.621 Sum_probs=63.9
Q ss_pred EcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 86 IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 86 v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
|+||+..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEe
Confidence 579999999999999999999999999999887889999999999999999999999998888 5666654
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=3.2e-12 Score=97.81 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..+++|||+|||.++.+.||.++|. +||.|..|.+.... ....||||+|++.-+|+.|+..-+|..++|..|+|.|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3568999999999999999999998 99999999875332 2357999999999999999999999999999999999
Q ss_pred cccCC
Q 022077 251 ATNKK 255 (303)
Q Consensus 251 ~~~~~ 255 (303)
....+
T Consensus 80 prggr 84 (241)
T KOG0105|consen 80 PRGGR 84 (241)
T ss_pred ccCCC
Confidence 88765
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.35 E-value=5.9e-12 Score=99.96 Aligned_cols=86 Identities=21% Similarity=0.389 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCcccCHHHHHH----HHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQE----TFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~----~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
.+..||||.||+..+..++|+. +|+ +||+|..|...+ +.+.+|.|||.|++.+.|-.|+..|+|..+.|+.+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 3445999999999999999988 998 999999887764 46789999999999999999999999999999999
Q ss_pred EEeecccCCCCCCc
Q 022077 247 RIGPATNKKTVSGQ 260 (303)
Q Consensus 247 ~v~~~~~~~~~~~~ 260 (303)
+|.||+.+.....+
T Consensus 83 riqyA~s~sdii~~ 96 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQ 96 (221)
T ss_pred heecccCccchhhc
Confidence 99999987654433
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.2e-12 Score=108.14 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
..+.+.|||..|..-+++|||.-+|+ .||.|.+|.|++|..+|.+..||||+|++.+++++|.-+|++..|+.++|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 36678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 022077 250 PATN 253 (303)
Q Consensus 250 ~~~~ 253 (303)
|+.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9765
No 106
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.2e-12 Score=104.17 Aligned_cols=103 Identities=18% Similarity=0.318 Sum_probs=85.4
Q ss_pred ceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHH
Q 022077 153 QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 153 ~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 232 (303)
|.|.|..+..+ ......++||||-|...-+|||++.+|. .||.|++|.+++.. .|.+||||||.|.+..+|..|
T Consensus 3 rpiqvkpadse----srg~~drklfvgml~kqq~e~dvrrlf~-pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaA 76 (371)
T KOG0146|consen 3 RPIQVKPADSE----SRGGDDRKLFVGMLNKQQSEDDVRRLFQ-PFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAA 76 (371)
T ss_pred CCccccccccc----cCCccchhhhhhhhcccccHHHHHHHhc-ccCCcceeEEecCC-CCCCCCceEEEeccchHHHHH
Confidence 34455544432 2334678999999999999999999998 99999999999996 788999999999999999999
Q ss_pred HHHhCCce-e--CCeeeEEeecccCCCCCCcc
Q 022077 233 MTEMNGVF-C--STRPMRIGPATNKKTVSGQQ 261 (303)
Q Consensus 233 ~~~l~g~~-~--~g~~l~v~~~~~~~~~~~~~ 261 (303)
|+.|||.. + ....|.|+|++..+++..++
T Consensus 77 I~aLHgSqTmpGASSSLVVK~ADTdkER~lRR 108 (371)
T KOG0146|consen 77 INALHGSQTMPGASSSLVVKFADTDKERTLRR 108 (371)
T ss_pred HHHhcccccCCCCccceEEEeccchHHHHHHH
Confidence 99999976 3 46789999998877765544
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=2.1e-11 Score=82.23 Aligned_cols=74 Identities=32% Similarity=0.661 Sum_probs=66.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..+ .++.+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 5899999999999999999999999999999987744 6789999999999999999999999887 667776653
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.28 E-value=3.9e-12 Score=108.38 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=94.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||++|.+++++|.|+++|+ .||+|.+|.+++|+.+++++||+||+|++.+...+++.. ..+.|.|+.|.+.-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 578999999999999999999998 999999999999999999999999999999998888764 557899999999999
Q ss_pred ccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
.++........ ...-.+||||.+. +++ ++++++|
T Consensus 83 v~r~~~~~~~~----------------~~~tkkiFvGG~~~~~~e~~~r~yf 118 (311)
T KOG4205|consen 83 VSREDQTKVGR----------------HLRTKKIFVGGLPPDTTEEDFKDYF 118 (311)
T ss_pred cCccccccccc----------------ccceeEEEecCcCCCCchHHHhhhh
Confidence 88876643220 0033589998555 788 7777776
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=2.8e-11 Score=94.58 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhC-CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.......++|..++..+.+.++..+|. +| |.|..+++.+++.||.++|||||+|++.+.|..|-+.||+..+.++.|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~-q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFR-QFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhh-hcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345566799999999999999999998 77 7788888889999999999999999999999999999999999999999
Q ss_pred EeecccC
Q 022077 248 IGPATNK 254 (303)
Q Consensus 248 v~~~~~~ 254 (303)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998776
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.24 E-value=1.2e-10 Score=101.98 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=121.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceE-EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...-.|-+.+||+.||+++|.+||+-.-.+.. +.+..+. .+++.|-|||+|++.+.|++|+.. +...| +.+.|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~i--GhRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENI--GHRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhh--ccceEEe
Confidence 34568899999999999999999998766666 3344444 688999999999999999999953 33333 3333333
Q ss_pred eecCCC--------------------------------------------------------------------------
Q 022077 158 NWASFG-------------------------------------------------------------------------- 163 (303)
Q Consensus 158 ~~~~~~-------------------------------------------------------------------------- 163 (303)
..++..
T Consensus 177 F~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~ 256 (510)
T KOG4211|consen 177 FRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRD 256 (510)
T ss_pred ehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccc
Confidence 322100
Q ss_pred ----C--CC-C-------CC-CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHH
Q 022077 164 ----A--GE-K-------RD-DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (303)
Q Consensus 164 ----~--~~-~-------~~-~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 228 (303)
. .. + .. ......++.++|++..++.+|.++|+ ......|.|-... +|+..|-|+|+|.+.++
T Consensus 257 ~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFs--pl~p~~v~i~ig~-dGr~TGEAdveF~t~ed 333 (510)
T KOG4211|consen 257 PNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFS--PLNPYRVHIEIGP-DGRATGEADVEFATGED 333 (510)
T ss_pred cccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcC--CCCceeEEEEeCC-CCccCCcceeecccchh
Confidence 0 00 0 00 11126788899999999999999996 5566677777664 78899999999999999
Q ss_pred HHHHHHHhCCceeCCeeeEEeec
Q 022077 229 QLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 229 A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
|..|+.+ ++..+..+.|.....
T Consensus 334 av~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 334 AVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred hHhhhcc-CCcccCcceeeeccc
Confidence 9999875 777788888877654
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.3e-12 Score=101.24 Aligned_cols=144 Identities=22% Similarity=0.324 Sum_probs=118.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|+...++++-|.++|-+-|.|..+.|..++ .+..+ ||||.|+++....-|++.+||..+. +..+++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q~- 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE--EDEEQR- 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc--cchhhc-
Confidence 466899999999999999999999999999998887766 45666 9999999999999999999999984 333333
Q ss_pred ecCCCCCCCCCCCCCceEEEcC----CCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 159 WASFGAGEKRDDTPDHTIFVGD----LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
+++.|+ |...++++.+...|+ .-|.+..+++..+. +|+++.++|+.+...-+.-.++.
T Consensus 82 ----------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 82 ----------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ----------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhh
Confidence 344455 677889999999998 99999999999887 48889999999988888778887
Q ss_pred HhCCceeCCee
Q 022077 235 EMNGVFCSTRP 245 (303)
Q Consensus 235 ~l~g~~~~g~~ 245 (303)
...+....-+.
T Consensus 144 ~y~~l~~~~~~ 154 (267)
T KOG4454|consen 144 LYQGLELFQKK 154 (267)
T ss_pred hhcccCcCCCC
Confidence 76666543333
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=7.2e-11 Score=79.22 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=53.2
Q ss_pred HHHHHHHHh----hcCCceEEE-EEecCCC--CCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 95 ETYLNTCFA----HTGEVVAVK-VIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 95 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+++|+++|+ .||.|.++. +..++.+ +.++|+|||+|.+.++|.+|++.|||..+ .++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 578888888 999999995 7777666 89999999999999999999999999999 6666654
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.20 E-value=1.8e-11 Score=104.13 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=138.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...+++|+|++.+.+.+.+...++..+|......+........++|++++.|+..+.+..|+.........+......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999989999999998888888777777899999999999999999999643323332221111111
Q ss_pred ecCC----CCCCCCCCCCCceE-EEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 159 WASF----GAGEKRDDTPDHTI-FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 159 ~~~~----~~~~~~~~~~~~~l-~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
.... ............++ ++++|+..+++++|+.+|. .+|.|..+++..+..++..+|+|+|.|.+...+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 1111 11111222334444 4999999999999999997 9999999999999999999999999999999999998
Q ss_pred HHhCCceeCCeeeEEeecccCCCC
Q 022077 234 TEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 234 ~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
.. ....+.++.+++.+...+...
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 87 788899999999998887544
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=3.8e-11 Score=101.75 Aligned_cols=218 Identities=13% Similarity=0.133 Sum_probs=141.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.+....+..++|+|..++.+|..+|.-.........+.....|+..|++.|.|.+.+.-+-|++. +...+ +++.+.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryiev 133 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIEV 133 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCceee
Confidence 34555677889999999999999997543333333333333466778999999999888888864 44444 6777777
Q ss_pred eecCCCCCCC------------CCCCCCceEEEcCCCcccCHHHHHHHHhhh----CCCcceEEEEeeCCCCCceeEEEE
Q 022077 158 NWASFGAGEK------------RDDTPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGFV 221 (303)
Q Consensus 158 ~~~~~~~~~~------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----~G~i~~~~i~~~~~~~~~~g~afV 221 (303)
-.+....... .....--.|.+++||++.++.|+.++|. . -|..+.+-++.. .+|+..|-|||
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~-~~cpv~~g~egvLFV~r-pdgrpTGdAFv 211 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFG-PPCPVTGGTEGVLFVTR-PDGRPTGDAFV 211 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcC-CCCcccCCccceEEEEC-CCCCcccceEE
Confidence 6554321111 1123345688899999999999999994 2 234445544444 37899999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCCccccCC----CCccCc-----ccccc-CCCCCCcEEEEeeec
Q 022077 222 RFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSGQQQYPK----ASYQNS-----QVAQS-DDDPNNTTVSTVVIF 291 (303)
Q Consensus 222 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~-~~~~~~~~~~~~~~~ 291 (303)
.|...++|..|+.+ |...++-|.|.+..++..+..+....+.. ...+.. ..... .....+|.-.=|+++
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 99999999999986 66667778877765554332211111110 000000 11111 222355666667888
Q ss_pred ccC-ccccccc
Q 022077 292 NIK-NPVFQTF 301 (303)
Q Consensus 292 ~~~-~~~~~~f 301 (303)
.++ |+|+.+|
T Consensus 291 ~AtvEdIL~Fl 301 (508)
T KOG1365|consen 291 EATVEDILDFL 301 (508)
T ss_pred hhhHHHHHHHH
Confidence 999 9999876
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=7.4e-11 Score=75.52 Aligned_cols=56 Identities=29% Similarity=0.644 Sum_probs=49.9
Q ss_pred HHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 98 LNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 98 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
|+++|++||.|.++.+..++ +++|||+|.+.++|.+|++.|||..+ .++.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 67899999999999997765 46999999999999999999999999 7889999885
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=97.45 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=71.9
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCee
Q 022077 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRP 245 (303)
Q Consensus 167 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~ 245 (303)
...+...++|||++|...+++.+|+++|. +||+|.+++++.. +++|||+|.+.++|+.|...+ +...|+|++
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34566678999999999999999999998 9999999999866 569999999999999988765 556689999
Q ss_pred eEEeecccCC
Q 022077 246 MRIGPATNKK 255 (303)
Q Consensus 246 l~v~~~~~~~ 255 (303)
|+|.|+.+++
T Consensus 295 l~i~Wg~~~~ 304 (377)
T KOG0153|consen 295 LKIKWGRPKQ 304 (377)
T ss_pred EEEEeCCCcc
Confidence 9999999943
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=7.7e-11 Score=108.13 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.-++|||||+|+..+++.||.++|+ .||.|.+|.++.. ++||||...+..+|.+|+.+|++..+.++.|+|.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~fe-efGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFE-EFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHH-hcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 3468999999999999999999998 9999999988655 88999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 022077 251 ATNKKTVS 258 (303)
Q Consensus 251 ~~~~~~~~ 258 (303)
+..++.+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 99998775
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=2.7e-11 Score=112.76 Aligned_cols=168 Identities=18% Similarity=0.294 Sum_probs=137.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++||+|||...+++.+|+..|..+|.|.+|.|-..+ -+....|+||.|.+.+.+-.|+..+.+..|..+ .++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~r 444 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--THR 444 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccC--ccc
Confidence 45567899999999999999999999999999998887654 345556999999999999999999998888433 334
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
+.+... .....+.+++++|..++....|...|. .||.|..|.+-. ..-||+|.|++...|+.|+..|
T Consensus 445 ~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd-~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 445 IGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFD-RFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred cccccc------ccccceeeccCCCCCCChHHHHHHHhh-ccCcceeeeccc------CCcceeeecccCccchhhHHHH
Confidence 333321 345678899999999999999999996 999999876632 2458999999999999999999
Q ss_pred CCceeCC--eeeEEeecccCCCCCCc
Q 022077 237 NGVFCST--RPMRIGPATNKKTVSGQ 260 (303)
Q Consensus 237 ~g~~~~g--~~l~v~~~~~~~~~~~~ 260 (303)
.|..|++ +.++|.|+..-.....+
T Consensus 512 rgap~G~P~~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPPGATPQQ 537 (975)
T ss_pred hcCcCCCCCcccccccccCCCCChhh
Confidence 9999975 77999998887655443
No 119
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=1.1e-10 Score=107.08 Aligned_cols=108 Identities=23% Similarity=0.366 Sum_probs=87.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
-++|||||+|+.++++.+|.++|+.||.|.+|.++..+ |||||.+...++|.+|+.+|+...+ .++.|++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEee
Confidence 45799999999999999999999999999999998765 5999999999999999999998888 899999999
Q ss_pred cCCCCCCC-CCCCCCceEEEcCCCcccCHHHHHHHHh
Q 022077 160 ASFGAGEK-RDDTPDHTIFVGDLAADVTDYMLQETFR 195 (303)
Q Consensus 160 ~~~~~~~~-~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 195 (303)
+-...... -.......|=|.-||++.-.++++.+++
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 97554432 1112223345666788766666777774
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=4.2e-12 Score=117.49 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=131.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...+++|++||+..+.+.+|...|..+|.+..+++...+.+++.+|+||++|...+.+.+|+....+..+ +
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~--g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF--G------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh--h-------
Confidence 3456899999999999999999999999988887776777889999999999999999999976555444 1
Q ss_pred ecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
...++|.|.++..|.++++.+++ .+|++++++++..+ .|+.+|.|+|.|.+..+|.+++..+++
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 25799999999999999999998 99999999987776 789999999999999999999998888
Q ss_pred ceeCCeeeEEeeccc
Q 022077 239 VFCSTRPMRIGPATN 253 (303)
Q Consensus 239 ~~~~g~~l~v~~~~~ 253 (303)
.-+.-+.+.|..+.+
T Consensus 800 ~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcCccccccCC
Confidence 888878888877555
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=4e-10 Score=88.20 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhc-CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.....+|++.++..+.+.++..+|.++ |.+..+++.|++.||.++|||||+|++.+.|.-|.+.||+..| .++.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhheeee
Confidence 345679999999999999999999998 6688888889999999999999999999999999999999999 6666666
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
.+-.
T Consensus 125 ~vmp 128 (214)
T KOG4208|consen 125 HVMP 128 (214)
T ss_pred EEeC
Confidence 6543
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.5e-10 Score=95.08 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=75.8
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..+.|||-.|.+-+|+++|.-+|+.||.|.+|.++++..||.+..||||+|++.+++++|.-.|+...| ..+.|.|.|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVDF 315 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVDF 315 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEeeh
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 778888888
Q ss_pred cCC
Q 022077 160 ASF 162 (303)
Q Consensus 160 ~~~ 162 (303)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 754
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.97 E-value=3.7e-09 Score=94.21 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.-+++|||.+|...+...||+.+|+ +||+|+-.+|+.+..+--.+.|+||++.+.++|.+||..||-.++.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4567899999999999999999999 999999999998876667789999999999999999999999999999999998
Q ss_pred cccC
Q 022077 251 ATNK 254 (303)
Q Consensus 251 ~~~~ 254 (303)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8764
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.93 E-value=3.7e-08 Score=89.85 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=123.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
+.+.+-+.+...+..+.+++++|.-. .+....+..+...+-..|-++|+|....++.+|+.. +...+ ..+.+.+.-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~--~~R~~q~~P 385 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD--VNRPFQTGP 385 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh--hhcceeecC
Confidence 34455567889999999999998543 244555555554444468999999999999999853 33332 344444332
Q ss_pred cC---------------------------------CCCCCC--CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce-
Q 022077 160 AS---------------------------------FGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG- 203 (303)
Q Consensus 160 ~~---------------------------------~~~~~~--~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~- 203 (303)
.. ...... .....+.+|||..||..+++.++.++|+ .--.|++
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~-~~~~Ved~ 464 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFM-GAAAVEDF 464 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhh-hhhhhhhe
Confidence 11 111111 2234567899999999999999999998 5556666
Q ss_pred EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCC
Q 022077 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 204 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
|.|.+.. +++.++.|||+|...+++..|...-+...++.+.|+|+-...+..
T Consensus 465 I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 465 IELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 6665554 788899999999999999999888788889999999987666544
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=92.51 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=67.2
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
+.|-+.|+|++++-+||.++|. -|-.+-.-.+++..+.|...|.|.|.|++.++|.+|...|+++.|.+|.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~-dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFN-DYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhc-ccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4789999999999999999998 787766544455556899999999999999999999999999999999998865
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=5.8e-09 Score=87.75 Aligned_cols=80 Identities=23% Similarity=0.429 Sum_probs=69.1
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
.++....+||||+|-..+++.+|++.|.+||.|+++.+...+ ++|||+|.+.+.|+.|.+.+-. .+...|..+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecceEE
Confidence 355677899999999999999999999999999999998865 4999999999999999877555 333388999
Q ss_pred EeeecCC
Q 022077 156 RLNWASF 162 (303)
Q Consensus 156 ~v~~~~~ 162 (303)
++.|+..
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999986
No 127
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.2e-09 Score=95.59 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=115.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|+|-||+..+++++|.++|+.||+|+.++.-+.+ +|.+||+|-+..+|++|++.|++..| .++.++
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREI--AGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHh--hhhhhc
Confidence 35567899999999999999999999999999997665554 47999999999999999999999999 555555
Q ss_pred eeecCCCCCC-----------------CCCC-CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeE
Q 022077 157 LNWASFGAGE-----------------KRDD-TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY 218 (303)
Q Consensus 157 v~~~~~~~~~-----------------~~~~-~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~ 218 (303)
.........- .... -....+++ .|....+..-++..++ .+|.+.. +. ++.-...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~-~~~~~~~-~~-----~~~~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISS-VDGSSPG-RE-----TPLLNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchh-ccCcccc-cc-----ccchhhh
Confidence 2221111000 0001 11223333 4888777777777776 7888765 22 3333346
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCC
Q 022077 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 219 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 255 (303)
-|++|.+..++..+...+ |..+.+....+.++....
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCCCc
Confidence 788888888886666644 788888887788877643
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.88 E-value=8.5e-09 Score=84.73 Aligned_cols=84 Identities=31% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
+....+|.|.||++.++++||+++|. .||.++.+-+.+++ .|.+.|.|-|.|+..++|.+|+..+||..++|+.|++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34457899999999999999999998 99999999999997 78999999999999999999999999999999999998
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
......
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 866543
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.82 E-value=4.7e-09 Score=84.65 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
....+||+|.|..+++++.|...|.+|-.....++++++.||+++||+||.|.+..++.+|+++++|+.+ +.+.|++.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklR 265 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLR 265 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhh
Confidence 3456899999999999999999999999988899999999999999999999999999999999999999 67777766
Q ss_pred ec
Q 022077 159 WA 160 (303)
Q Consensus 159 ~~ 160 (303)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 43
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=2.4e-08 Score=89.15 Aligned_cols=84 Identities=24% Similarity=0.368 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++.|||.+|...+-..+|+++|++||.|+..+++.+..+-..+.|+||++.+.++|.+||..|+.+.+ +|+.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 34567899999999999999999999999999999999887777888999999999999999999999999 8889999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
..++..
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 877643
No 131
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.78 E-value=9.4e-08 Score=67.36 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=70.2
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhC-CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC----CeeeEE
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS----TRPMRI 248 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 248 (303)
+||.|+|||...+.++|.+++.+.+ |...-+.+..|..++.+.|||||.|.+.+.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999996333 55666788888888899999999999999999999999998864 567788
Q ss_pred eecccCC
Q 022077 249 GPATNKK 255 (303)
Q Consensus 249 ~~~~~~~ 255 (303)
.||+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887654
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.76 E-value=5e-08 Score=80.23 Aligned_cols=84 Identities=23% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.+....+|+|.||+..+++++|+++|..||.+..+.+..++ +|++.|.|-|.|...++|.+|++.++|..+ .++.++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCccc--CCceee
Confidence 34455789999999999999999999999998888888887 799999999999999999999999999777 566677
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
+......
T Consensus 156 ~~~i~~~ 162 (243)
T KOG0533|consen 156 IEIISSP 162 (243)
T ss_pred eEEecCc
Confidence 7765543
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=5.4e-08 Score=86.44 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=70.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
...|||+|||.+++.++|+++|+ .||.|+...|..-...++..+||||+|++.+++..|+.+ +-..+++++|.|+-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk-~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFK-QFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHh-hcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34599999999999999999998 999999998887653455559999999999999999986 6788999999998776
Q ss_pred cCCCC
Q 022077 253 NKKTV 257 (303)
Q Consensus 253 ~~~~~ 257 (303)
...+.
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 64433
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.3e-08 Score=80.43 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
..+||++|++...+.+|..+|. .||.+.++.+. .||+||+|++.-+|..|+..||++.|+|..+.|.|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFK-GYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHh-hccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4689999999999999999998 99999998774 56899999999999999999999999999999999997
Q ss_pred CC
Q 022077 254 KK 255 (303)
Q Consensus 254 ~~ 255 (303)
..
T Consensus 73 ~~ 74 (216)
T KOG0106|consen 73 KR 74 (216)
T ss_pred cc
Confidence 54
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=1.9e-08 Score=82.85 Aligned_cols=85 Identities=16% Similarity=0.284 Sum_probs=79.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
........+||+|+.+..+.+++..+|+ .||.|..+.|..|+..+.++|||||+|.+.+.+..|+. |+|..|.|+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~-~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFE-SCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhccCCceEEEeccccccccchhhheee-ccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3456678899999999999999999998 99999999999999888999999999999999999998 999999999999
Q ss_pred EeecccC
Q 022077 248 IGPATNK 254 (303)
Q Consensus 248 v~~~~~~ 254 (303)
|.+.+-+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9998877
No 136
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.73 E-value=9.2e-08 Score=75.87 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCC-CCceeEEEEEeCCHHHHHHHHHHhCCcee---CCeee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRPM 246 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 246 (303)
...++|||.+||.++.--||..+|. .|-..+.+.+...... ...+-+||++|.+..+|.+|++.|||..| .+..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4468999999999999999999998 8888877766543211 12346899999999999999999999997 58999
Q ss_pred EEeecccCC
Q 022077 247 RIGPATNKK 255 (303)
Q Consensus 247 ~v~~~~~~~ 255 (303)
++.+++...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999988754
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.72 E-value=1.5e-09 Score=93.33 Aligned_cols=158 Identities=14% Similarity=0.262 Sum_probs=123.7
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
..||+|||.+.++.++|+.+|...-.-.+-.++.. .||+||.+.+...|.+|++.++|..- ..|..+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccchh
Confidence 47899999999999999999976533223333332 25999999999999999999998653 267777777654
Q ss_pred CCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEE-eeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
.. ...++++-|+|++..+..+.|..++. .||.+++|..+ .+.. ....-|+|.+.+.+..|+.+|+|..
T Consensus 75 ~k------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 75 PK------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hH------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 22 23356699999999999999999998 99999998763 3322 2234478999999999999999999
Q ss_pred eCCeeeEEeecccCCCC
Q 022077 241 CSTRPMRIGPATNKKTV 257 (303)
Q Consensus 241 ~~g~~l~v~~~~~~~~~ 257 (303)
+.+..++|.|.-.....
T Consensus 144 ~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 144 LENQHLKVGYIPDEQNA 160 (584)
T ss_pred hhhhhhhcccCchhhhh
Confidence 99999999997765443
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.6e-08 Score=90.26 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.+.+..+|+|-||+..+++++|..+|+ .||+|..|+.-. ..+|.+||+|.|.-+|++|++.|++.++.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356678999999999999999999998 999999976643 3488999999999999999999999999999998
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=8e-08 Score=87.91 Aligned_cols=83 Identities=27% Similarity=0.517 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCC---CCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
+..++.|||+||+..++++.|...|. +||.|.+++|++.+. ..+.+.|+||.|-+..+|++|+..|+|..+.++.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 56678899999999999999999998 999999999998873 33456799999999999999999999999999999
Q ss_pred EEeeccc
Q 022077 247 RIGPATN 253 (303)
Q Consensus 247 ~v~~~~~ 253 (303)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999954
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=6.5e-07 Score=63.12 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=68.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhc--CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC--CCceeEe
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN--GEQNFRL 157 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~--~~~~i~v 157 (303)
+||+|.|+|...|.++|.+++... |...-+.+..|-.++.+.|||||.|.+.+.|.+..+.++|..+.. ..+.+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 445567777888889999999999999999999999999998753 3666777
Q ss_pred eecCC
Q 022077 158 NWASF 162 (303)
Q Consensus 158 ~~~~~ 162 (303)
.||..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=1.1e-07 Score=78.36 Aligned_cols=82 Identities=18% Similarity=0.443 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....+.+||||+...+|.+++...|+.||.+..+.+..++.+|.++||+||+|.+.+.+..++. |+|..+ .++.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccce
Confidence 34566899999999999999999999999999999999999888999999999999999999997 999999 677777
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
+.+..
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 77654
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.53 E-value=3.1e-07 Score=77.52 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcce--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 243 (303)
....|||.|||.++|.+++.++|+ ++|.|.+ |++-++. .|..+|-|+|.|...++..-|+..|++..+.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345699999999999999999999 9999864 6677775 58889999999999999999999999999999
Q ss_pred eeeEEeecccC
Q 022077 244 RPMRIGPATNK 254 (303)
Q Consensus 244 ~~l~v~~~~~~ 254 (303)
+.|+|.-|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999987653
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=85.16 Aligned_cols=81 Identities=28% Similarity=0.579 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCC---CCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ---TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
...+.|||+||+..++++.|...|+.||.|.+++++..+. ..+..-||||.|-+..+|++|++.|+|..+ ....+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeeee
Confidence 3456799999999999999999999999999999987541 234556999999999999999999999999 78889
Q ss_pred EeeecC
Q 022077 156 RLNWAS 161 (303)
Q Consensus 156 ~v~~~~ 161 (303)
++.|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999985
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=1.2e-06 Score=78.06 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=62.8
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...+|||+|||.+++.++|+++|..||.|+...|......++...||||+|.+.+++..|+.+ + .+..+++.+.|.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-s--p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-S--PLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-C--ccccCCeeEEEEe
Confidence 345699999999999999999999999999888877553345558999999999999999975 4 4444666666664
Q ss_pred c
Q 022077 160 A 160 (303)
Q Consensus 160 ~ 160 (303)
.
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=5.7e-08 Score=76.79 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+|+...+++|.|.++|- ..|.|..+.|..++ .++.+ ||||.|+++....-|+..|||..+.++.+.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3457999999999999999999998 99999999998876 45555 999999999999999999999999999998887
Q ss_pred ccc
Q 022077 251 ATN 253 (303)
Q Consensus 251 ~~~ 253 (303)
-..
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 443
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.39 E-value=1.3e-06 Score=58.61 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=46.1
Q ss_pred ceEEEcCCCcccCHHHHH----HHHhhhCC-CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 174 HTIFVGDLAADVTDYMLQ----ETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~----~~f~~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
..|+|.|||.+.....|+ .++. -+| .|.+| . .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsd-NCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSD-NCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHH-TTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhh-ccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 469999999988776555 4443 554 45433 1 356999999999999999999999999999999
Q ss_pred eecccCCC
Q 022077 249 GPATNKKT 256 (303)
Q Consensus 249 ~~~~~~~~ 256 (303)
.|....+.
T Consensus 72 ~~~~~~r~ 79 (90)
T PF11608_consen 72 SFSPKNRE 79 (90)
T ss_dssp ESS--S--
T ss_pred EEcCCccc
Confidence 99866543
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.34 E-value=1.9e-07 Score=79.95 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=116.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecC---CCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe-
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK---QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL- 157 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v- 157 (303)
..|-|.||.+.+|.++++.+|.-.|.|..+.++.+. ........|||.|.+...+..|.. |..+.+- ++.+-|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv--draliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV--DRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee--eeeEEEE
Confidence 489999999999999999999999999999988743 222445689999999999988875 5555542 222222
Q ss_pred eecCCC--------------CCC-------------------------------------CCCCCCCceEEEcCCCcccC
Q 022077 158 NWASFG--------------AGE-------------------------------------KRDDTPDHTIFVGDLAADVT 186 (303)
Q Consensus 158 ~~~~~~--------------~~~-------------------------------------~~~~~~~~~l~v~nl~~~~~ 186 (303)
-+.... ... .....-..+++|++|...+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 111100 000 00012236799999999999
Q ss_pred HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 187 ~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
..++.+.|. .+|+|...++.-. ....+|.++|........|+. ++|.++.-...++...++
T Consensus 165 l~e~~e~f~-r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 165 LPESGESFE-RKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred chhhhhhhh-hcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999998 9999998887533 345678899999999999987 488887644444444433
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.19 E-value=2.7e-06 Score=61.39 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=43.9
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc-----eeCCeeeEE
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV-----FCSTRPMRI 248 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~l~v 248 (303)
+.|+|.++...++.++|++.|+ .||.|..|.+... ...|+|.|.+.++|.+|+..+... .+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 5789999999999999999998 8999988877544 346999999999999999877433 456666555
Q ss_pred ee
Q 022077 249 GP 250 (303)
Q Consensus 249 ~~ 250 (303)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.15 E-value=4e-06 Score=70.94 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=65.9
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCC--ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 150 (303)
.......++|||||-|.+|+++|.+.+...|. +.++++..++.+|.+||||+|...+....++-++.|-.+.+.|
T Consensus 75 s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 75 SSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred cccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 34556678999999999999999999988775 7788999999999999999999999999999999888888754
No 150
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.15 E-value=3.2e-06 Score=73.43 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEee---CCCC--C--------ceeEEEEEeCCHHHHHHHHH
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID---RLTG--R--------TKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~---~~~~--~--------~~g~afV~f~~~~~A~~A~~ 234 (303)
..+.++++|.+.|||.+-..+.|.++|+ .+|.|+.|+|... ..++ . .+-+|||+|++.+.|.+|.+
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 4456899999999999999999999998 9999999999877 3222 1 14579999999999999999
Q ss_pred HhCCceeCCeeeEEee
Q 022077 235 EMNGVFCSTRPMRIGP 250 (303)
Q Consensus 235 ~l~g~~~~g~~l~v~~ 250 (303)
.|+....+-..|+|.+
T Consensus 305 ~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVKL 320 (484)
T ss_pred hhchhhhhhhcchhhh
Confidence 8866554444444443
No 151
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.10 E-value=1e-05 Score=65.81 Aligned_cols=89 Identities=20% Similarity=0.366 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCC
Q 022077 134 AGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG 213 (303)
Q Consensus 134 ~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~ 213 (303)
.-|..|...|+++.. .++.+++.|+.. ..|+|.||...++.|.+.+.|+ .||.|+...+..|. .+
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVDD-RG 69 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhh-hcCccchheeeecc-cc
Confidence 446667778999998 889999999873 5799999999999999999998 99999998777774 68
Q ss_pred CceeEEEEEeCCHHHHHHHHHHhC
Q 022077 214 RTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 214 ~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
+..+-++|+|...-.|.+|+..++
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhc
Confidence 888999999999999999998873
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.07 E-value=4.5e-06 Score=71.18 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
.....++||-+|+..+++++|.++|. ++|.|.. |.|-+++.|+..|+-|.|.|++...|+.|+..++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 44567899999999999999999998 9998864 56778888999999999999999999999999999999
Q ss_pred CCeeeEEeecccCCCC
Q 022077 242 STRPMRIGPATNKKTV 257 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~~ 257 (303)
.+..|+|.++..+...
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999999887743
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=1.7e-05 Score=66.89 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCCceEEEcCCCcccCHHHH------HHHHhhhCCCcceEEEEeeCCCCCc-eeE--EEEEeCCHHHHHHHHHHhCCcee
Q 022077 171 TPDHTIFVGDLAADVTDYML------QETFRARYPSTKGAKVVIDRLTGRT-KGY--GFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l------~~~f~~~~G~i~~~~i~~~~~~~~~-~g~--afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
....-+||-+|+..+-+|++ .++|. +||.|..|.|-+......+ .+. .||+|.+.|+|.+||..++|..+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 33456899999988877662 37897 9999998887665422221 122 49999999999999999999999
Q ss_pred CCeeeEEeecccC
Q 022077 242 STRPMRIGPATNK 254 (303)
Q Consensus 242 ~g~~l~v~~~~~~ 254 (303)
+||.|+..|...|
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999998776
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=7.9e-06 Score=69.71 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=74.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCce--------EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
.....+|||-+|+..+++++|.++|.++|.|. .|++.+++.|++.||-|.|.|++...|+.|+..++++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf- 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF- 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-
Confidence 44567899999999999999999999999864 367888999999999999999999999999999999999
Q ss_pred CCCceeEeeecCCC
Q 022077 150 NGEQNFRLNWASFG 163 (303)
Q Consensus 150 ~~~~~i~v~~~~~~ 163 (303)
.+..++|..+...
T Consensus 142 -~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 -CGNTIKVSLAERR 154 (351)
T ss_pred -cCCCchhhhhhhc
Confidence 5688888877654
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.97 E-value=5.6e-05 Score=50.91 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=45.5
Q ss_pred ceEEEcCCCccCCHHHHHH----HHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 82 RTLWIGDLQYWMDETYLNT----CFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~----~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
..|+|.|||.+.+...|+. ++..||. |.++ . .+.|+|.|.+.+.|.+|.+.|+|..+ .|..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 4699999999998877665 4556765 4443 1 14799999999999999999999999 667777
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
+.+....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 7776543
No 156
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.97 E-value=2.2e-05 Score=65.07 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhCCCcceEEEEeeCCCCCc-eeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 187 DYMLQETFRARYPSTKGAKVVIDRLTGRT-KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 187 ~~~l~~~f~~~~G~i~~~~i~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
++++++.++ +||.|.+|.|+.....-.. .--.||+|++.++|.+|+..|||+.|+||.++..|-...
T Consensus 300 ede~keEce-Kyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECE-KYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHH-hhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 467889997 9999999998887532221 124799999999999999999999999999998886654
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=6.8e-07 Score=83.69 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=113.7
Q ss_pred cceEEEcCCCccCCHH-HHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 81 IRTLWIGDLQYWMDET-YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~-~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
.+...+.++.+...+. ..+..|..+|.|+.++....+..-...-++++++.....++.|.. -.+..+ ..+...+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~--a~~~~av~~ 647 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGAL--ANRSAAVGL 647 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-cccccc--CCccccCCC
Confidence 3456666776666555 567889999999998877633222222388999999999988875 355555 444444444
Q ss_pred cCCCCCCCCC------CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 160 ASFGAGEKRD------DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 160 ~~~~~~~~~~------~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
+......... .....++||+||+..+.+++|...|. .+|.+..+++......++.+|+||++|...+.|.+|+
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 4332211111 12345799999999999999999998 9999988877756667889999999999999999998
Q ss_pred HHhCCceeCCe
Q 022077 234 TEMNGVFCSTR 244 (303)
Q Consensus 234 ~~l~g~~~~g~ 244 (303)
....++.++..
T Consensus 727 ~f~d~~~~gK~ 737 (881)
T KOG0128|consen 727 AFRDSCFFGKI 737 (881)
T ss_pred hhhhhhhhhhh
Confidence 76555554433
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=3.3e-05 Score=55.76 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=39.1
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 146 (303)
+.|.|.++...++.++|++.|+.||.|..|.+.+... .|||.|.+.+.|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5788999999999999999999999999888876542 7999999999999999876554
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=1.8e-05 Score=66.77 Aligned_cols=112 Identities=9% Similarity=0.187 Sum_probs=75.7
Q ss_pred cceEEEcCCCccCCHHH----H--HHHHhhcCCceEEEEEecCCC-CCcccE--EEEEEccHHHHHHHHHHhCCCCCCCC
Q 022077 81 IRTLWIGDLQYWMDETY----L--NTCFAHTGEVVAVKVIRNKQT-GQIEGY--GFIEFISRAGAERVLQTFNGTPMPNG 151 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~----l--~~~f~~~g~i~~~~~~~~~~~-~~~~g~--afv~f~~~~~a~~a~~~l~g~~~~~~ 151 (303)
..-+||-+|+..+..++ | .++|.+||.|..|.+.+...+ ....+. .||.|.+.++|.+||...+|..+ .
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 35689999998887776 2 368999999998888765411 112222 39999999999999999999999 7
Q ss_pred CceeEeeecCCCCCC----CCCCCCCceEEEcCCC---cccCHHHHHHHH
Q 022077 152 EQNFRLNWASFGAGE----KRDDTPDHTIFVGDLA---ADVTDYMLQETF 194 (303)
Q Consensus 152 ~~~i~v~~~~~~~~~----~~~~~~~~~l~v~nl~---~~~~~~~l~~~f 194 (303)
|+.++..+...+--. ...-....+.|+..-. ..++++||...=
T Consensus 192 Gr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 192 GRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred CceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 889998887533100 0112333455553322 246777776543
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.85 E-value=1.8e-05 Score=67.01 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCC--cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
....++|||||-+++|++||.+.+. ..|. +.+++++.++.+|.+||||+|...+..+.++.++.|-.+.|.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3446799999999999999999986 6654 667888999999999999999999999999999999999998887666
Q ss_pred e
Q 022077 249 G 249 (303)
Q Consensus 249 ~ 249 (303)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 4
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.75 E-value=0.00012 Score=52.08 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=51.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEE-EEeeC------CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVIDR------LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~-i~~~~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
.+.|.|-+.|.. ....|.++|+ +||.|.+.. +.++. ..-.......|+|++..+|.+||.. ||..++|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 456788888887 4456788898 999998764 11110 0011245789999999999999986 999998865
Q ss_pred e-EEeeccc
Q 022077 246 M-RIGPATN 253 (303)
Q Consensus 246 l-~v~~~~~ 253 (303)
| -|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 4 5777754
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00013 Score=65.83 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCcc------cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee-CC
Q 022077 171 TPDHTIFVGDLAAD------VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-ST 243 (303)
Q Consensus 171 ~~~~~l~v~nl~~~------~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g 243 (303)
.-...++|.|+|.- .-..-|.++|+ ++|+|+...+..+..+| .+||.|++|.+..+|+.|++.|||+.+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 44578999998852 23456778998 99999999999887554 899999999999999999999999997 46
Q ss_pred eeeEEee
Q 022077 244 RPMRIGP 250 (303)
Q Consensus 244 ~~l~v~~ 250 (303)
++..|+.
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6777754
No 163
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.62 E-value=6.2e-05 Score=68.19 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---CCeee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STRPM 246 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 246 (303)
...++.|||.||-.-+|.-+|+.++....|.|++. |+ | +-+..|||.|.+.++|.+.+.+|||..+ +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678899999999999999999998556667766 33 2 2367899999999999999999999885 78999
Q ss_pred EEeecccCC
Q 022077 247 RIGPATNKK 255 (303)
Q Consensus 247 ~v~~~~~~~ 255 (303)
.+.|+....
T Consensus 515 ~adf~~~de 523 (718)
T KOG2416|consen 515 IADFVRADE 523 (718)
T ss_pred EeeecchhH
Confidence 999987653
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.60 E-value=3.4e-05 Score=62.98 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 188 ~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
|+|...|+++||+|+++.|-.+. .-.-.|-++|.|...++|++|+..||+..++|+.|...++.--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 66777777799999998776553 2234678999999999999999999999999999999886543
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.57 E-value=0.00017 Score=45.06 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=40.7
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
+.|-|.+.+.+..+ ++..+|. .||+|+.+.+- ......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~-~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFA-SFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHH-hcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46778888776664 4566887 89999998774 22557999999999999985
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00025 Score=44.28 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=41.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHH
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 140 (303)
+.|-|.+.+.+..+ ++...|..||.|..+.+-... ...||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 56788888877764 555688899999988776333 28999999999999985
No 167
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.48 E-value=0.00011 Score=62.86 Aligned_cols=82 Identities=20% Similarity=0.490 Sum_probs=69.6
Q ss_pred CCcceEE-EcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLW-IGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~-v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++| +++|+..+++++|+..|..+|.|..+++..+..++..+|+|||.|.+...+..++.. +...+ .++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 258 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRL 258 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCccccc
Confidence 3344555 999999999999999999999999999999999999999999999999999998865 56666 6777888
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.+....
T Consensus 259 ~~~~~~ 264 (285)
T KOG4210|consen 259 EEDEPR 264 (285)
T ss_pred ccCCCC
Confidence 776543
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.42 E-value=0.00011 Score=60.02 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCC--------CCce----eEEEEEeCCHHHHHHHHHHhCCc
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT--------GRTK----GYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~--------~~~~----g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
....||+++||...+-.-|+++|+ .||.|-+|.+-....+ |.++ .-|.|+|.+...|.++...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999998 9999999988766544 2222 23789999999999999999999
Q ss_pred eeCCee
Q 022077 240 FCSTRP 245 (303)
Q Consensus 240 ~~~g~~ 245 (303)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00079 Score=60.96 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=60.8
Q ss_pred CCcceEEEcCCCccC--CH----HHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 79 GEIRTLWIGDLQYWM--DE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~--t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
.-...|+|.|+|--- -. .-|..+|+++|.+....+..+..+ ..+||.|++|++..+|..|++.|||..++ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ld-kn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLD-KN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceec-cc
Confidence 455678999998421 12 235568999999999888877754 49999999999999999999999999986 45
Q ss_pred ceeEee
Q 022077 153 QNFRLN 158 (303)
Q Consensus 153 ~~i~v~ 158 (303)
+.+.+.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 555554
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00031 Score=61.42 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEec---CCC--CC--------cccEEEEEEccHHHHHHHHHHh
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN---KQT--GQ--------IEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~--~~--------~~g~afv~f~~~~~a~~a~~~l 143 (303)
+.-.+++|.+-|||.+-.-+.|.++|+.+|.|..|++..- ..+ +. .+-+|+|+|+..+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999999999999999999999999875 111 21 2458999999999999999887
Q ss_pred CCCC
Q 022077 144 NGTP 147 (303)
Q Consensus 144 ~g~~ 147 (303)
+...
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 5543
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.21 E-value=0.0015 Score=49.41 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=51.3
Q ss_pred CCCCceEEEcCCC------cccCH---HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 170 DTPDHTIFVGDLA------ADVTD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 170 ~~~~~~l~v~nl~------~~~~~---~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
..+..++.|.-+. ..+.+ .+|.+.|+ .||++.=+|++.+ .-.|+|.+-++|.+|+. |+|.+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 4556676665544 12322 36778887 8999887777643 37899999999999986 69999
Q ss_pred eCCeeeEEeecccCCC
Q 022077 241 CSTRPMRIGPATNKKT 256 (303)
Q Consensus 241 ~~g~~l~v~~~~~~~~ 256 (303)
++|+.|+|+...+.=.
T Consensus 94 v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDWL 109 (146)
T ss_dssp ETTEEEEEEE------
T ss_pred ECCEEEEEEeCCccHH
Confidence 9999999999887644
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.18 E-value=0.00032 Score=57.27 Aligned_cols=71 Identities=25% Similarity=0.449 Sum_probs=59.6
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCC--------CCcc----cEEEEEEccHHHHHHHHHHhCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT--------GQIE----GYGFIEFISRAGAERVLQTFNGTP 147 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~~----g~afv~f~~~~~a~~a~~~l~g~~ 147 (303)
....||+++||+.+.-..|+++|+.||.|-.|.+.....+ |.+. .-|+|+|.+-..|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999988888775544 2222 257899999999999999999999
Q ss_pred CCC
Q 022077 148 MPN 150 (303)
Q Consensus 148 ~~~ 150 (303)
|.|
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 954
No 173
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.10 E-value=0.0037 Score=40.06 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=44.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhC---CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARY---PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
...|+|+++.. ++-++|+.+|. .| ....+|.++-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35799999954 88889999998 67 245678888774 3889999999999999864
No 174
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.03 E-value=0.00014 Score=69.07 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...+.+||+|||+..+++.+|+..|. .+|.|.+|.|-+.. -+.-..||||.|.+...+-+|+..+.+..|....+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~-e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFD-ESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhh-hhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 35578999999999999999999997 99999999987663 23345689999999999999999999999887777777
Q ss_pred eccc
Q 022077 250 PATN 253 (303)
Q Consensus 250 ~~~~ 253 (303)
+...
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 7655
No 175
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.00 E-value=0.0014 Score=60.66 Aligned_cols=107 Identities=13% Similarity=0.299 Sum_probs=77.8
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...++||||+...+..+-++.++..||.|.++.... |||++|.....+.+|+..++...+.+.+...+++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 346899999999999999999999999988775543 89999999999999999988888866665555543
Q ss_pred cCCCCCCCC------------CCCCCceEEEcCCCcccCHHHHHHHHh
Q 022077 160 ASFGAGEKR------------DDTPDHTIFVGDLAADVTDYMLQETFR 195 (303)
Q Consensus 160 ~~~~~~~~~------------~~~~~~~l~v~nl~~~~~~~~l~~~f~ 195 (303)
......... .....+.++|.+++..+.+......|.
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 222211110 011145577788877777766666664
No 176
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.98 E-value=0.011 Score=42.86 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=55.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhC-CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC---eeeE
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST---RPMR 247 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 247 (303)
....+.+...+..++-++|..+.+ .+ ..|..++|++|. ..++-.++++|.+.++|..-....||+.++. ...+
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~-~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGA-PFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhh-cccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 344556666666777777876665 54 457788999885 3357789999999999999999999999753 3344
Q ss_pred Eeec
Q 022077 248 IGPA 251 (303)
Q Consensus 248 v~~~ 251 (303)
|-|.
T Consensus 89 vvfV 92 (110)
T PF07576_consen 89 VVFV 92 (110)
T ss_pred EEEE
Confidence 4443
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.89 E-value=0.00083 Score=58.70 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=63.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-eCCeeeEEeecc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPMRIGPAT 252 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~~~~ 252 (303)
.+|||+||....+-.||..+|.+.--.... .++. ..||+||.+.+..+|.+|++.++|+. +.|+++.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g-~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSG-QFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCc-ceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999743111111 1221 25799999999999999999999976 899999999998
Q ss_pred cCCCCCCc
Q 022077 253 NKKTVSGQ 260 (303)
Q Consensus 253 ~~~~~~~~ 260 (303)
+++.+..+
T Consensus 75 ~kkqrsrk 82 (584)
T KOG2193|consen 75 PKKQRSRK 82 (584)
T ss_pred hHHHHhhh
Confidence 88765443
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.75 E-value=0.0071 Score=43.03 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=48.5
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEE-EEecC------CCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVK-VIRNK------QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
..+.|.|-+.|... ...|.+.|++||.|.+.. +.++. ..........|+|.+..+|.+||. .||..+. +.
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS-GS 81 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET-TC
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc-Cc
Confidence 45668888888874 467888999999987764 10100 001122489999999999999996 5998884 23
Q ss_pred ceeEeeec
Q 022077 153 QNFRLNWA 160 (303)
Q Consensus 153 ~~i~v~~~ 160 (303)
..+-|.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 34445554
No 179
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0047 Score=55.61 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=57.2
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHh-hcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHH
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFA-HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 141 (303)
-+..+|||||+||.-++.++|..+|+ -||.|..+-|=.|.+-+-.+|-|=|.|.+...-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35678999999999999999999998 69999988888886667899999999999999999885
No 180
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.71 E-value=0.001 Score=58.96 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=60.0
Q ss_pred ceEEEcCCCcccCH-HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 174 HTIFVGDLAADVTD-YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 174 ~~l~v~nl~~~~~~-~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
+.|-+..++..++. ++|..+|. +||+|+.|.|-.. --.|.|+|.+..+|-+|.. .++..|++|.|+|.|.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhh-hcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 44555556666654 88999998 9999999988443 3459999999999988865 59999999999999999
Q ss_pred cCC
Q 022077 253 NKK 255 (303)
Q Consensus 253 ~~~ 255 (303)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 854
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.61 E-value=0.0014 Score=53.80 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=45.3
Q ss_pred hcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 104 HTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 104 ~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
+||.|+++++..+. .-...|-+||.|...++|++|++.||+..+ .|+.|...+..
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecC
Confidence 89999998777654 234567899999999999999999999999 67777776654
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.54 E-value=0.0028 Score=57.90 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=62.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhh-cCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC-CCCce
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQN 154 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~-~~~~~ 154 (303)
....+..|+|.||-.-.|.-+|+.++.+ +|.|.+.+|=+ -|..|||.|.+.++|.+.+.+|+|..+. +..+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999995 55666663322 2337999999999999999999998875 34666
Q ss_pred eEeeecC
Q 022077 155 FRLNWAS 161 (303)
Q Consensus 155 i~v~~~~ 161 (303)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7777664
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.45 E-value=0.024 Score=36.35 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.5
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhc----CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHT----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 143 (303)
..+|.|.|+. +++.++|+.+|..| + ...+..+-|. .|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3578999986 46778999999998 4 4578888886 5899999999999999764
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.43 E-value=0.013 Score=39.59 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=41.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
...+|+ .|..+...||.++|+ .||.|. |.++.|. -|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFs-pfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFS-PFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCC-CCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhc-cCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 456665 899999999999998 999985 5555442 59999999999999998875
No 185
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.39 E-value=0.0078 Score=48.01 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=46.5
Q ss_pred cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEeecccCC
Q 022077 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~~ 255 (303)
-..+.|+++|. .|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+.|..++|.|+....
T Consensus 7 ~~~~~l~~l~~-~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFS-TYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHH-TT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhHHHHHHHHH-hcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34578999998 99999888777552 348999999999999999999 999999999999995443
No 186
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.35 E-value=0.0014 Score=55.97 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=63.2
Q ss_pred ceEEEcCCCcccCHHHHH---HHHhhhCCCcceEEEEeeCC--CCC-ceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 174 HTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRL--TGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~---~~f~~~~G~i~~~~i~~~~~--~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.-+||-+|+..+.++.+. +.|. +||.|..|.+..+.. .+. ...-++|+|+..++|.+||...+|..+.|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457777888777665554 6787 899999998888762 111 112389999999999999999999999999998
Q ss_pred EeecccCC
Q 022077 248 IGPATNKK 255 (303)
Q Consensus 248 v~~~~~~~ 255 (303)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88887763
No 187
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.30 E-value=0.058 Score=48.61 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=19.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEE
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~ 111 (303)
+.+-...|+..-..++|..-+.+-|.++.+
T Consensus 482 ~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 482 KKVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred cceeeccCcCcccHHHHHHHHHhccccccc
Confidence 456666777666677888777755554433
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.26 E-value=0.017 Score=48.39 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCCCc-ccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 96 TYLNTCFAHTGEVVAVKVIRNKQTGQI-EGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 96 ~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
+++++-+.+||.|..|.+......-.. .---||+|+..+.|.+|+-.|||+.| +|+.++..|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeeheecc
Confidence 466778899999999888765422111 22579999999999999999999999 88888877654
No 189
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.22 E-value=0.0086 Score=52.07 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=60.8
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCC---CCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..|.|.||....+.+++..+|. -.|+|.++++..... -......|||.|.+...+..|-. |.+.+|-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 4899999999999999999998 899999998876432 12335689999999999998854 677777777776654
Q ss_pred c
Q 022077 251 A 251 (303)
Q Consensus 251 ~ 251 (303)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 3
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.16 E-value=0.034 Score=37.70 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=42.0
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 145 (303)
...+|+ .|......||.++|+.||.|. |..+-+. .|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345555 899999999999999999974 6677664 699999999999999988754
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.03 E-value=0.088 Score=38.22 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=51.5
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
....+.+...+..++.++|..+.+.+-. |..++++++.. .++-.+++.|.+.+.|+...+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445556666777777777766666544 66788888753 35668999999999999999999999984
No 192
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.81 E-value=0.0059 Score=58.07 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce--eCCeeeEEeecccC
Q 022077 177 FVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRPMRIGPATNK 254 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~~~ 254 (303)
.+.|..-.++-.-|..+|+ .||.|.+++.+++ -..|.|+|.+.+.|..|+++|+|++ +.|...+|.+++.-
T Consensus 302 ~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCS-DYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHH-hhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3344456677888999999 9999999988877 4579999999999999999999999 47888999999876
Q ss_pred CCC
Q 022077 255 KTV 257 (303)
Q Consensus 255 ~~~ 257 (303)
..-
T Consensus 375 ~~~ 377 (1007)
T KOG4574|consen 375 PMY 377 (1007)
T ss_pred ccc
Confidence 544
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.69 E-value=0.042 Score=41.63 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 97 YLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 97 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
+|-+.|+.||.+.-+++..+ .-+|+|.+.+.|.+|+. ++|..+ .|+.+++...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v--~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV--NGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE--TTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE--CCEEEEEEeCC
Confidence 56667889999887777654 48999999999999995 799999 77888877654
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.67 E-value=0.03 Score=50.97 Aligned_cols=73 Identities=7% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhh-hCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCeeeE
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRA-RYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRPMR 247 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~ 247 (303)
...|.+.|+.|+..+-.|+++.+|+. .+-.+.+|.+..+. -=||+|++..||+.|.+.|.. +.|-|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 44577888999999999999999962 24677788776552 158999999999999987753 336666665
Q ss_pred Eee
Q 022077 248 IGP 250 (303)
Q Consensus 248 v~~ 250 (303)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 443
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.58 E-value=0.056 Score=40.52 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCCceEEEcCCCcccCH-H---HHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 170 DTPDHTIFVGDLAADVTD-Y---MLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~-~---~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
+.+-.+|.|+=|..++.- | .+...++ .||.|.+|... | +.-|.|.|++..+|-+|+.+++. ..-|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 566678888766655432 3 4455666 89999998773 3 34599999999999999998775 667888
Q ss_pred eEEeecc
Q 022077 246 MRIGPAT 252 (303)
Q Consensus 246 l~v~~~~ 252 (303)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888854
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.50 E-value=0.11 Score=46.37 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=58.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhC-CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST 243 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 243 (303)
+..|+|-.+|..++-.||..++. .+ -.|.+++|++|.. -++-.++|+|.+.++|..-...+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~-~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCA-SFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHH-HHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999997 54 5588999999753 335679999999999999999999999754
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.35 E-value=0.015 Score=46.17 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=50.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhh-CCCc---ceEEEEeeCCC-C-CceeEEEEEeCCHHHHHHHHHHhCCceeCC--
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRAR-YPST---KGAKVVIDRLT-G-RTKGYGFVRFGDESEQLRAMTEMNGVFCST-- 243 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~-~G~i---~~~~i~~~~~~-~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 243 (303)
...+|.|++||..++++++.+.++ . ++.- ..+.-..+... . ....-|||.|.+.+++..-...++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 456899999999999999999776 5 5554 22321122111 1 123469999999999999999999988622
Q ss_pred ---eeeEEeecccCCCC
Q 022077 244 ---RPMRIGPATNKKTV 257 (303)
Q Consensus 244 ---~~l~v~~~~~~~~~ 257 (303)
....|.+|--.+..
T Consensus 85 g~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp S-EEEEEEEE-SS----
T ss_pred CCCcceeEEEcchhccc
Confidence 34567777665443
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.17 E-value=0.015 Score=55.46 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCC
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASF 162 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~ 162 (303)
+.++.|..-..+-..|..+|.+||.|.+.+..++-. .|.|+|.+.+.|..|+++|+|+.+..-|.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445566667788889999999999999999998875 79999999999999999999999877888899998864
No 199
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.87 E-value=2.1 Score=36.32 Aligned_cols=158 Identities=13% Similarity=0.173 Sum_probs=97.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecC-------CCCCcccEEEEEEccHHHHHHHH----HHhCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-------QTGQIEGYGFIEFISRAGAERVL----QTFNGT 146 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~----~~l~g~ 146 (303)
.=..|.|.+.|+..+++-..+...|-+||.|+++.++.+. ..........+.|-+.+.+.... +.|+..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999865 11233457888998887765443 233332
Q ss_pred CCCCCCceeEeeecCCCCCCC----------------------CCCCCCceEEEcCCCcccCH-HHHHHH---HhhhCCC
Q 022077 147 PMPNGEQNFRLNWASFGAGEK----------------------RDDTPDHTIFVGDLAADVTD-YMLQET---FRARYPS 200 (303)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~~----------------------~~~~~~~~l~v~nl~~~~~~-~~l~~~---f~~~~G~ 200 (303)
.-......+++.+........ .....++.|.|.-- ..+.+ +-+.+. +. .-++
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~-~~~n 169 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLK-NSNN 169 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhc-cCCC
Confidence 222245555666554311110 11234555666322 33323 323332 22 2343
Q ss_pred ----cceEEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 201 ----TKGAKVVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 201 ----i~~~~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
+++|.++..... .-++.||.++|-+...|...+.-|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 556777654322 2346899999999999999998775
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.86 E-value=0.21 Score=32.56 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 184 DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.++-++|+..|. .|+-. +|..|+ .| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr-~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567789999997 78653 455553 33 589999999999999999999988877765
No 201
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.81 E-value=0.043 Score=45.23 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=54.4
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 144 (303)
..|||.||..-++.+.+...|+.||.|..-.++.|- .++..+-++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 689999999999999999999999999876666665 47788899999999999999998763
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.53 E-value=0.16 Score=38.09 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=51.8
Q ss_pred CcceEEEcCCCccC----CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 80 EIRTLWIGDLQYWM----DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 80 ~~~~l~v~nLp~~~----t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
.-.+|.|.=|..++ +...+...++.||.|.++.+.... .|.|.|++...|-+|+.++.... -|..+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~---pgtm~ 154 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRA---PGTMF 154 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCC---CCceE
Confidence 34577776554433 223444567889999998776543 69999999999999998877633 57778
Q ss_pred EeeecC
Q 022077 156 RLNWAS 161 (303)
Q Consensus 156 ~v~~~~ 161 (303)
.+.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888865
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.52 E-value=0.032 Score=44.36 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=49.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhh-cCCceEEEEE---ecCC-CC-CcccEEEEEEccHHHHHHHHHHhCCCCCCC-C
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVI---RNKQ-TG-QIEGYGFIEFISRAGAERVLQTFNGTPMPN-G 151 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~---~~~~-~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~~-~ 151 (303)
....+|.|++||+++|++++++.++. ++.-..+... .... .+ ..-.-|||.|.+.+++......++|..+.. .
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999997776 5543222222 2211 11 123479999999999999999999977632 2
Q ss_pred C--ceeEeeecCCC
Q 022077 152 E--QNFRLNWASFG 163 (303)
Q Consensus 152 ~--~~i~v~~~~~~ 163 (303)
| ....|.+|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 2 33446666543
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.30 E-value=0.024 Score=48.57 Aligned_cols=78 Identities=9% Similarity=0.196 Sum_probs=57.6
Q ss_pred ceEEEcCCCccCCHHHHH---HHHhhcCCceEEEEEecCC--CCC-cccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 82 RTLWIGDLQYWMDETYLN---TCFAHTGEVVAVKVIRNKQ--TGQ-IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~--~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
.-+||-+|+....++.+. +.|.+||.|.++.+.++.. .+. ..--+||+|+..++|.+||...+|..+ .++.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhhh
Confidence 457888888777666544 4789999999998887651 111 112489999999999999999999888 55556
Q ss_pred EeeecC
Q 022077 156 RLNWAS 161 (303)
Q Consensus 156 ~v~~~~ 161 (303)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 666554
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.20 E-value=0.19 Score=42.46 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=54.8
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee-EEeec
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM-RIGPA 251 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l-~v~~~ 251 (303)
...+.|.+.+..-.. .|..+|+ +||+|++.... ....+-+|+|.+.-+|.+||.. ||+.|+|..+ -|.-.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~-~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFS-RCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchh-HHHHHHH-hhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 556777777765444 4667887 99999865432 2345899999999999999986 9999887653 56665
Q ss_pred ccCCCC
Q 022077 252 TNKKTV 257 (303)
Q Consensus 252 ~~~~~~ 257 (303)
..+...
T Consensus 268 tDksvi 273 (350)
T KOG4285|consen 268 TDKSVI 273 (350)
T ss_pred CCHHHh
Confidence 555433
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.07 E-value=0.36 Score=32.32 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=36.8
Q ss_pred eEEEcCCC--cccCHHHHHHHHhhhCCCcc-----eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 175 TIFVGDLA--ADVTDYMLQETFRARYPSTK-----GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 175 ~l~v~nl~--~~~~~~~l~~~f~~~~G~i~-----~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
+||| |+- ..++..+|..++. ..+.|. .|.|. ..|+||+-... .|..++..|++..++|+.++
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAIC-NEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHH-TCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----
T ss_pred EEEE-EcccccCCCHHHHHHHHH-hccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEE
Confidence 3555 333 3577888888887 565554 34553 34789988655 78889999999999999999
Q ss_pred Eeec
Q 022077 248 IGPA 251 (303)
Q Consensus 248 v~~~ 251 (303)
|+.+
T Consensus 71 ve~A 74 (74)
T PF03880_consen 71 VERA 74 (74)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9864
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.66 E-value=0.14 Score=35.40 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=45.7
Q ss_pred EEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC--CCCCC---CCCCCCCceEEEcCCCcccCHHHHHHHHh
Q 022077 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS--FGAGE---KRDDTPDHTIFVGDLAADVTDYMLQETFR 195 (303)
Q Consensus 126 afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~--~~~~~---~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 195 (303)
|+|+|.+..-|.+.++. ....+...+..++|.-.. ..... -......++|.|.|||..+.+|+|++.++
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999988853 333443344444443222 21111 13346678999999999999999998885
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.07 E-value=0.41 Score=42.83 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 150 (303)
..++.|+|-.+|..+|-.||..|...+-. |.+++++|+.- .++-.++|.|.+.++|......+||+.|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33788999999999999999999887644 88999999642 344578999999999999999999998853
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.03 E-value=0.2 Score=45.95 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=48.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhh--cCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 143 (303)
..+.|.|+++.|+..+-.|+++.+|.. |-.+.+|.+-.+. -=||+|++..+|..|.+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 345577889999999999999999964 6668888887764 2699999999999998654
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.97 E-value=0.069 Score=49.83 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
......++||+|+...+.++-++.++. .+|.|.++.... |||+.|.....+.+|+..++-..++|..+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 345678999999999999999999998 999998876532 8999999999999999999999999988877
Q ss_pred eec
Q 022077 249 GPA 251 (303)
Q Consensus 249 ~~~ 251 (303)
.-.
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.96 E-value=0.29 Score=39.11 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.9
Q ss_pred CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC--CCCCCCCCceeEeeecCCC
Q 022077 94 DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQNFRLNWASFG 163 (303)
Q Consensus 94 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~i~v~~~~~~ 163 (303)
..+.|+++|..++.+..+..++.- +-..|.|.+.+.|.+|...|+ +..+ .+..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcccc
Confidence 457899999999999888877654 258999999999999999999 7777 7777888887533
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=0.63 Score=39.48 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=49.6
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...|-|-+.+..-. ..|..+|++||.|++...-.+. .+-+|.|.+..+|.+||. .||+.|. +...|-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALs-kng~ii~-g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALS-KNGTIID-GDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhh-hcCeeec-cceEEeeee
Confidence 34556667776544 5677899999999876554222 389999999999999996 4888885 333444444
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.40 E-value=0.11 Score=46.57 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=56.8
Q ss_pred cceEEEcCCCccC-CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 81 IRTLWIGDLQYWM-DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 81 ~~~l~v~nLp~~~-t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
.+.|-+.-.+... |-++|...|.+||.|..|.+-.... .|.|+|.+..+|-+|. ...+..| .++.+||.|
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avl--nnr~iKl~w 442 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVL--NNRFIKLFW 442 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-cccccee--cCceeEEEE
Confidence 3445454444433 5578999999999999998866532 6999999999997776 4688888 789999999
Q ss_pred cCCC
Q 022077 160 ASFG 163 (303)
Q Consensus 160 ~~~~ 163 (303)
....
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8754
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.93 E-value=1.4 Score=29.35 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=38.1
Q ss_pred eEEEc-CCCccCCHHHHHHHHhhcCC-----ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 83 TLWIG-DLQYWMDETYLNTCFAHTGE-----VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 83 ~l~v~-nLp~~~t~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
++||. +--..++..+|..++...+. |-.+.+..+ |+||+.... .|..+++.|++..+ .++.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ 70 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKI--KGKKVR 70 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--S--SS----
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCC--CCeeEE
Confidence 45553 33467888999999987755 344555443 899998765 77888999999999 677777
Q ss_pred eee
Q 022077 157 LNW 159 (303)
Q Consensus 157 v~~ 159 (303)
+..
T Consensus 71 ve~ 73 (74)
T PF03880_consen 71 VER 73 (74)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 215
>PHA03247 large tegument protein UL36; Provisional
Probab=89.31 E-value=2.2 Score=46.67 Aligned_cols=6 Identities=17% Similarity=0.739 Sum_probs=2.4
Q ss_pred CCCccC
Q 022077 88 DLQYWM 93 (303)
Q Consensus 88 nLp~~~ 93 (303)
.+++++
T Consensus 3003 ~~~~w~ 3008 (3151)
T PHA03247 3003 RVSSWA 3008 (3151)
T ss_pred Ccchhh
Confidence 344333
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.27 E-value=2.1 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 92 WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 92 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
.++-++++..+..|+- .++..++ +| =||.|.+..+|++|....+|..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCCEE
Confidence 5677899999999964 2334444 43 49999999999999999998876
No 217
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=87.80 E-value=2.7 Score=40.47 Aligned_cols=12 Identities=8% Similarity=-0.244 Sum_probs=5.1
Q ss_pred eEEEcCCCccCC
Q 022077 83 TLWIGDLQYWMD 94 (303)
Q Consensus 83 ~l~v~nLp~~~t 94 (303)
++|-.-+++.+.
T Consensus 387 tvf~~~~De~Il 398 (830)
T KOG1923|consen 387 TVFHELNDEKIL 398 (830)
T ss_pred chhhhhhHHHHH
Confidence 444444444443
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.24 E-value=3.4 Score=35.16 Aligned_cols=88 Identities=5% Similarity=0.074 Sum_probs=65.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCC-------CCCceeEEEEEeCCHHHHHHHHH----HhC
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL-------TGRTKGYGFVRFGDESEQLRAMT----EMN 237 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~----~l~ 237 (303)
+...++.|.+.|+..+++-..+...|. +||.|++|.++.+.. ..+.....++.|-+.+.+..-.. .|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 345567788999999999999999998 999999999998751 11224568999999988776543 333
Q ss_pred C--ceeCCeeeEEeecccCCCC
Q 022077 238 G--VFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 238 g--~~~~g~~l~v~~~~~~~~~ 257 (303)
. ..+....|.+.|..-+...
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~ 111 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQK 111 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccc
Confidence 2 3378888999887764433
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.32 E-value=4 Score=37.98 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCCceEEEcCCCcc-cCHHHHHHHHhhhC----CCcceEEEEeeCC----------CCC--------------------
Q 022077 170 DTPDHTIFVGDLAAD-VTDYMLQETFRARY----PSTKGAKVVIDRL----------TGR-------------------- 214 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~~----G~i~~~~i~~~~~----------~~~-------------------- 214 (303)
...+++|-|.|+.++ +.-+||.-+|+ .| |.|.+|.|-...- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~n-SFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFN-SFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHH-hhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456788999999996 66799999887 66 6788887643220 111
Q ss_pred -----------------ceeEEEEEeCCHHHHHHHHHHhCCceeC--CeeeEEeeccc
Q 022077 215 -----------------TKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATN 253 (303)
Q Consensus 215 -----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~ 253 (303)
..-||.|+|++.+.|.+....++|.++. +..|.++|.-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 1248999999999999999999999985 45556666543
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=85.31 E-value=0.95 Score=35.54 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=53.5
Q ss_pred eEEEcCCCcccC-----HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe-eeEE
Q 022077 175 TIFVGDLAADVT-----DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-PMRI 248 (303)
Q Consensus 175 ~l~v~nl~~~~~-----~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 248 (303)
.+.+.++...+. ......+|. .|.+..-.++++. .+...|.|.+.+.|.+|...+++..|.|. .++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFr-q~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFR-QINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHh-hhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 455556655432 234445554 5555544444433 45678999999999999999999999988 8888
Q ss_pred eecccCCCCCC
Q 022077 249 GPATNKKTVSG 259 (303)
Q Consensus 249 ~~~~~~~~~~~ 259 (303)
.|+........
T Consensus 85 yfaQ~~~~~~~ 95 (193)
T KOG4019|consen 85 YFAQPGHPESN 95 (193)
T ss_pred EEccCCCcccc
Confidence 88887655443
No 221
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=85.29 E-value=5.6 Score=35.44 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=5.3
Q ss_pred CHHHHHHHH
Q 022077 186 TDYMLQETF 194 (303)
Q Consensus 186 ~~~~l~~~f 194 (303)
|.+|.+..|
T Consensus 471 tkDDaY~~F 479 (487)
T KOG4672|consen 471 TKDDAYNAF 479 (487)
T ss_pred cchHHHHHH
Confidence 556666555
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.23 E-value=1.3 Score=37.16 Aligned_cols=132 Identities=14% Similarity=0.309 Sum_probs=74.4
Q ss_pred EEEEEEcc----HHHHHHHHHHhCCCCCCCC--CceeEee-------ecCCC-----------CCCCCCCCCCceEEEcC
Q 022077 125 YGFIEFIS----RAGAERVLQTFNGTPMPNG--EQNFRLN-------WASFG-----------AGEKRDDTPDHTIFVGD 180 (303)
Q Consensus 125 ~afv~f~~----~~~a~~a~~~l~g~~~~~~--~~~i~v~-------~~~~~-----------~~~~~~~~~~~~l~v~n 180 (303)
+-||.|+. ..-..+.+..|+|..+... .-.++|. +.+.. -..-.......+||+.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 67888864 3445566677888876432 2223332 21110 00012234456788888
Q ss_pred CCcc------------cCHHHHHHHHhhhCCCcceEEEEeeC-----CCCCce-----eE---------EEEEeCCHHHH
Q 022077 181 LAAD------------VTDYMLQETFRARYPSTKGAKVVIDR-----LTGRTK-----GY---------GFVRFGDESEQ 229 (303)
Q Consensus 181 l~~~------------~~~~~l~~~f~~~~G~i~~~~i~~~~-----~~~~~~-----g~---------afV~f~~~~~A 229 (303)
||-. .+++-|+..|. .||.|..|.|..-. .+|+.. || |||+|-...-.
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~e-afg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgf 235 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFE-AFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGF 235 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHH-HhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhH
Confidence 8742 35778999998 99999988765321 234432 23 34444444445
Q ss_pred HHHHHHhCCcee----CC----eeeEEeecccCCCC
Q 022077 230 LRAMTEMNGVFC----ST----RPMRIGPATNKKTV 257 (303)
Q Consensus 230 ~~A~~~l~g~~~----~g----~~l~v~~~~~~~~~ 257 (303)
..|+..|.|..+ .| -.++|.|.+++...
T Consensus 236 a~amdalr~~k~akk~d~~ffqanvkvdfdrsrhls 271 (445)
T KOG2891|consen 236 AQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLS 271 (445)
T ss_pred HHHHHHHhcchHHhhcCCcccccccccccchhhhhh
Confidence 556666666542 33 35778877766443
No 223
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.82 E-value=1.6 Score=28.62 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCC
Q 022077 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 188 ~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 255 (303)
++|.+.|.+..-.|.++.-+..+.++.....-||+++...+...+ ++=+.+++..|+|...+.++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCCC
Confidence 567888874444577777777765667777889998877664443 44477899999988766554
No 224
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.36 E-value=1 Score=45.30 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=20.4
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEE
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV 111 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~ 111 (303)
..++++|--+-..+..++|+.+.+.++...++
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 34566666666677777777777766654433
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.02 E-value=5.4 Score=33.73 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=34.6
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHH
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 227 (303)
..-++++||+.++.-.||+..+. +-|-+- ..|.+. | ..|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr-~~~~~p-m~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELR-KRECTP-MSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHH-hcCCCc-eeEeee---c-CCcceeEecCCcc
Confidence 34599999999999999999997 544432 233322 2 3567999997643
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=81.81 E-value=6.1 Score=27.13 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=42.0
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
-|...++...+..+|++.++..||. |.+|..+.-. . ...-|||++....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 3444677889999999999856765 6667666554 1 2345999999998888876543
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.63 E-value=10 Score=33.78 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=47.2
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
..-...|-|.+++..+..+||...|+ .|++ --+|+|+-|. .||-.|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34557899999999999999999998 8866 3456666552 699999999999999875
No 228
>PHA01732 proline-rich protein
Probab=81.57 E-value=2 Score=29.11 Aligned_cols=6 Identities=0% Similarity=0.490 Sum_probs=2.4
Q ss_pred EEEEEe
Q 022077 110 AVKVIR 115 (303)
Q Consensus 110 ~~~~~~ 115 (303)
+++|.+
T Consensus 66 sLrIpk 71 (94)
T PHA01732 66 SLRIPK 71 (94)
T ss_pred eeEeec
Confidence 344433
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.42 E-value=12 Score=34.95 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCcceEEEcCCCcc-CCHHHHHHHHhhc----CCceEEEEEecC----------CCCC---------------------
Q 022077 78 PGEIRTLWIGDLQYW-MDETYLNTCFAHT----GEVVAVKVIRNK----------QTGQ--------------------- 121 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----g~i~~~~~~~~~----------~~~~--------------------- 121 (303)
...+++|-|-|+.|+ +...+|.-+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356688999999985 6777999888766 468888876421 1121
Q ss_pred ----------------cccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 122 ----------------IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 122 ----------------~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
.--||.|+|.+.+.|.+..+.++|..+...+..+.+.|-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1138999999999999999999999998777777777654
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=79.23 E-value=9 Score=25.82 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=41.7
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
-|+..++...+..+|++.++..||. |.+|..+.-+ . ...-|||++..-++|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 4555778899999999999856764 6666665553 1 2345999999888887775543
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.54 E-value=6.4 Score=27.28 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=40.5
Q ss_pred EEEEeCCHHHHHHHHHHh-CCceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeecc-cC-c
Q 022077 219 GFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIFN-IK-N 295 (303)
Q Consensus 219 afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 295 (303)
|+|+|++.+-|.+.++.- +-..+++..++|.-..--..... ........+..||.|.++.+ ++ |
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~-------------k~qv~~~vs~rtVlvsgip~~l~ee 67 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ-------------KFQVFSGVSKRTVLVSGIPDVLDEE 67 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce-------------EEEEEEcccCCEEEEeCCCCCCChh
Confidence 689999999999998742 22336777776654332221111 11223445566888887776 55 5
Q ss_pred cccc
Q 022077 296 PVFQ 299 (303)
Q Consensus 296 ~~~~ 299 (303)
++++
T Consensus 68 ~l~D 71 (88)
T PF07292_consen 68 ELRD 71 (88)
T ss_pred hhee
Confidence 5554
No 232
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=73.31 E-value=12 Score=27.15 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHhhhCCCcceEEEEeeC----CCCCceeEEEEEeCCHHHHHH
Q 022077 184 DVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~ 231 (303)
.++.+||++-+++.|-.-.++.++.+- ..|++.|||+| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 578889998887667664444433332 45788889977 677766543
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.60 E-value=9.3 Score=28.04 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=24.0
Q ss_pred cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH
Q 022077 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 226 (303)
.+.++|++.|+ .|..++ ++.+.+. ....|+++|+|.+.
T Consensus 29 ~~~~~l~~~l~-~f~p~k-v~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLA-EFNPLK-VKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHH-H---SE-EEEEEET--TEEEEEEEEE--SS
T ss_pred cCHHHHHHHHH-hcCCce-eEECcCC--CCCcEEEEEEECCC
Confidence 45688999998 798875 6677775 35689999999763
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.70 E-value=12 Score=31.82 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=36.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHH
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRA 134 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~ 134 (303)
....|+++||+.++--.+|+..+.+.+.+ ...+.... ..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCcc
Confidence 34569999999999999999999887753 23333322 2357999997653
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.88 E-value=20 Score=32.03 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=47.4
Q ss_pred CCCCCCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHH
Q 022077 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQ 141 (303)
Q Consensus 75 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 141 (303)
..+.+-...|=|.++|.....++|...|+.|+. =-+|+++-+. .||..|.+...|..|+-
T Consensus 385 l~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 385 LRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred CCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 334445567889999988888899999999876 2356666665 69999999999999984
No 236
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=69.49 E-value=28 Score=25.30 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCcccCHHHHHHHHhhh--CCCcceEEEEeeCCCCCceeEEEEEeCCHH
Q 022077 181 LAADVTDYMLQETFRAR--YPSTKGAKVVIDRLTGRTKGYGFVRFGDES 227 (303)
Q Consensus 181 l~~~~~~~~l~~~f~~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 227 (303)
-|+.++-.+++++|++. |-.|.+-.+.+|..-..+-..||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 47789999999999753 555665556666433334457888886653
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=68.32 E-value=2 Score=39.64 Aligned_cols=70 Identities=7% Similarity=0.061 Sum_probs=53.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
...|+||+.|+.++++-++|..++..+-.+..+.+...-.-.....+++|.|........|+.+||+..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 3457899999999999999999999886665544433222234556889999988888888888888776
No 238
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.23 E-value=88 Score=27.45 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=61.8
Q ss_pred cceEEEcCCCccCCHHHHHH-----------HHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 81 IRTLWIGDLQYWMDETYLNT-----------CFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~-----------~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
.+.|.| ++.+.-|..+|+. +.++||. ..+|.++.+... -.+.--+...-.+|+..|-..--
T Consensus 64 rrAvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~------s~~~~PT~~Nir~Al~wLV~~aq 136 (362)
T KOG1546|consen 64 RRAVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE------SPVRIPTGKNIRRALRWLVESAQ 136 (362)
T ss_pred ceEEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC------cccccCcHHHHHHHHHHHHhcCC
Confidence 345555 4777777777765 3467887 446666666432 12233455566666665544333
Q ss_pred CCCCceeEeeecCCCCCCC---CCCC--CCceEEEcCCCcc-----cCHHHHHHHHhhhCCCcceEEEEeeC
Q 022077 149 PNGEQNFRLNWASFGAGEK---RDDT--PDHTIFVGDLAAD-----VTDYMLQETFRARYPSTKGAKVVIDR 210 (303)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~---~~~~--~~~~l~v~nl~~~-----~~~~~l~~~f~~~~G~i~~~~i~~~~ 210 (303)
.+-.+-+.|+-...... .++. -..+|+ -++.+ +++|+.+.+.+ .--.=.++.++.|.
T Consensus 137 --~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~--P~D~~t~G~iIdDe~~r~lV~-plp~G~~lt~I~DS 203 (362)
T KOG1546|consen 137 --PGDSLVFHYSGHGTRQPDTNGDEVDGYDETIV--PCDHNTQGPIIDDEIFRILVR-PLPKGCKLTAISDS 203 (362)
T ss_pred --CCCEEEEEecCCCCcCCCCCCCCCCCCcceee--cccccccccccchHHHHHHHh-ccCCCceEEEEeec
Confidence 34556666665432221 1111 222332 33333 45666666665 55454556666553
No 239
>PRK11901 hypothetical protein; Reviewed
Probab=66.62 E-value=18 Score=31.52 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEE--EeCCHHHHHHHHHHhCCc
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV--RFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~g~ 239 (303)
...+|-|..+ -+++.|.++.. +++ +..++|......|+ ..|.+| .|.+.++|.+|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~-~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAK-KQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHH-HcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3445655443 44677877776 664 45666665554454 456655 799999999999988643
No 240
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.89 E-value=10 Score=28.94 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=64.7
Q ss_pred EEEcCCC--ccCCHHHHHHHHhh-cCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 84 LWIGDLQ--YWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 84 l~v~nLp--~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
..||.+- ...+-..|...+.. ++....+.+..- ..++..++|.+.+++.++++ +......+..+.+..-
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRW 89 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe---cccccccccchhhhhh
Confidence 4444442 34566777776655 333223333321 12489999999999988874 3322224444444432
Q ss_pred CCCCCCC--CCCCCCceEEEcCCCccc-CHHHHHHHHhhhCCCcceEEEE
Q 022077 161 SFGAGEK--RDDTPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVV 207 (303)
Q Consensus 161 ~~~~~~~--~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~~G~i~~~~i~ 207 (303)
+...... .......-+.|.|||..+ +++-++++.+ ..|.+.++...
T Consensus 90 ~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~ 138 (153)
T PF14111_consen 90 SPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDEN 138 (153)
T ss_pred cccccccccceeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcC
Confidence 2111111 111223347788999974 5667777776 99999877654
No 241
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=60.84 E-value=58 Score=23.15 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeCC----CCCceeEEEEEeCCHHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~A 232 (303)
...+..+|++-+...|+.=.+..++..-. .|++.|||.| |+|.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 36778888888876787654544444332 3455666655 6666665543
No 242
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.18 E-value=20 Score=23.51 Aligned_cols=63 Identities=8% Similarity=0.011 Sum_probs=42.5
Q ss_pred HHHHHHHhhhCC-CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 188 YMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 188 ~~l~~~f~~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
++|.+.|+ ..| .+..+.-+..++++..-..-+|+.....+-.. .++=+.++|+++.|.-...+
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788887 555 47778777777666667788888766543333 44556689999888754433
No 243
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=56.16 E-value=41 Score=25.68 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=38.5
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
-++..++...+..+|++.++..|+. |..|..+.-. .| ..-|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g--~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DG--LKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHh
Confidence 4455678889999999999855765 5556555443 12 33599999877776655443
No 244
>PF14893 PNMA: PNMA
Probab=55.75 E-value=22 Score=31.38 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=47.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhh----cCCceEE-EEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAH----TGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~----~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
+..+.|.|.+||.+|++++|++.+.. .|...=. ++.+ + .....-++|+|...-+-. +-=..|.|.|.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~-~--~~~~~aalve~~e~~n~~-----~iP~~i~g~gg 87 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFR-R--EENAKAALVEFAEDVNYS-----LIPREIPGKGG 87 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhh-h--hcccceeeeecccccchh-----hCchhcCCCCC
Confidence 45578999999999999999997753 4442111 1111 1 112337899987653321 23345667788
Q ss_pred eeEeeecCC
Q 022077 154 NFRLNWASF 162 (303)
Q Consensus 154 ~i~v~~~~~ 162 (303)
.++|-+...
T Consensus 88 ~W~Vv~~p~ 96 (331)
T PF14893_consen 88 PWRVVFKPP 96 (331)
T ss_pred ceEEEecCC
Confidence 888776543
No 245
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=55.20 E-value=58 Score=24.48 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=28.3
Q ss_pred cccCHHHHHHHHhhhCC-CcceEEEEeeC----CCCCceeEEEEEeCCHHHHHH
Q 022077 183 ADVTDYMLQETFRARYP-STKGAKVVIDR----LTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G-~i~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~ 231 (303)
...+..||++.+...|+ .=.+..++..- ..|.+.|||.| |+|.+.|..
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 36788899988886787 33333333222 23566677765 566655443
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.19 E-value=16 Score=32.06 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=29.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCC
Q 022077 219 GFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 219 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
|||+|++..+|..|++.+.... ++.+++..|-+.++-..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W 39 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIW 39 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccc
Confidence 7999999999999999765544 35568877777766543
No 247
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.80 E-value=67 Score=22.03 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=41.4
Q ss_pred eEEEcCCCccCCHHHHHHHHhh-cCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHH
Q 022077 83 TLWIGDLQYWMDETYLNTCFAH-TGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~-~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 142 (303)
.-|.-.+..+.+..+|++.++. ||. |.+++.+.... ...-|||.+...+.|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 3455567889999999999987 554 66777666542 223699999998888876543
No 248
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=53.54 E-value=32 Score=26.15 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 187 ~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
|.+|+..| .|.-+..+.+.... ....+-++.+.+... ..++..|.++.+.|+.++|....
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~~-~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDPF-AEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChHH-HHHHHHhhhcccCCCcEEEEECC
Confidence 56777777 46667777766552 224466677766664 45677889999999999998764
No 249
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=53.46 E-value=92 Score=23.25 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=39.3
Q ss_pred cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 185 VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
.+-+.+.+.+.+.-=.++++.. + .+...|+|++.++-.+|.+.|....-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~--~------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITP--E------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEe--e------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 5567888888732223444433 2 2248899999999999998887655455555555543
No 250
>PRK11901 hypothetical protein; Reviewed
Probab=50.77 E-value=1.7e+02 Score=25.64 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcc-cEEEEEEccHHHHHHHHHHhCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQTFNGT 146 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~ 146 (303)
+....+|-|..+ ..++.|..|..+++ +..+++++...+|+.- ..-|=.|.+.++|++|+..|-..
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 345566766655 35788888888876 4556676655455432 12233689999999999887553
No 251
>PHA03378 EBNA-3B; Provisional
Probab=50.14 E-value=2.5e+02 Score=27.51 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=11.4
Q ss_pred ceEEEcCCC--ccCCHHHHHHHHh
Q 022077 82 RTLWIGDLQ--YWMDETYLNTCFA 103 (303)
Q Consensus 82 ~~l~v~nLp--~~~t~~~l~~~f~ 103 (303)
..|....++ ..-++.-|+.++.
T Consensus 807 ~q~~~~~~~gq~gp~k~ilrqllt 830 (991)
T PHA03378 807 MQLMPRAAPGQQGPTKQILRQLLT 830 (991)
T ss_pred ceecCCCCccccCcHHHHHHHHhh
Confidence 344444444 3445666666663
No 252
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.87 E-value=2.5 Score=39.06 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=52.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
.+.|++.|+...++-.+|..+|+ .+-.+..+.+..+....+...+..|+|+.--....|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck-~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCK-GIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhc-cCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 46799999999999999999998 7777666555443322334456889998777777777777776654443
No 253
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=48.32 E-value=83 Score=21.18 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=40.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhh-cCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHH
Q 022077 83 TLWIGDLQYWMDETYLNTCFAH-TGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQT 142 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~-~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 142 (303)
.-|+-.++.+.+..+|++.++. ||. |.+++.+.-+. ...-|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3566678899999999999887 554 66666655441 223699999988888765443
No 254
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=47.62 E-value=27 Score=23.02 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.6
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 217 GYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 217 g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999988875544
No 255
>PRK10905 cell division protein DamX; Validated
Probab=47.58 E-value=72 Score=27.87 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=39.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcc-cEEEEEEccHHHHHHHHHHhCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIE-GYGFIEFISRAGAERVLQTFNG 145 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g 145 (303)
...+|-|+.+. +++.|++|..+.|. ....+.....+|+.. ..-+=.|.+.++|++|+..|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 44566666554 56788888888764 444455544445422 2234468999999999987754
No 256
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=47.09 E-value=1.7e+02 Score=24.38 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=5.3
Q ss_pred CCcccCHHHHHH
Q 022077 181 LAADVTDYMLQE 192 (303)
Q Consensus 181 l~~~~~~~~l~~ 192 (303)
-+.+++-|+-+.
T Consensus 318 pdedisleerra 329 (341)
T KOG2893|consen 318 PDEDISLEERRA 329 (341)
T ss_pred CcccccHHHHhh
Confidence 344455444443
No 257
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=46.00 E-value=1.5e+02 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 228 EQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 228 ~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
+|+++....+-..|-.|+|.|.|+...+..
T Consensus 479 eakr~~v~ndvatiLsRRiaveysdseDds 508 (518)
T KOG1830|consen 479 EAKREAVENDVATILSRRIAVEYSDSEDDS 508 (518)
T ss_pred HHhhccccchHHHHHHHHHHHHhccCcccc
Confidence 333333333334455566666666655443
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=44.26 E-value=35 Score=27.04 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=37.0
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhc-CCceEEEEEecCCC-CCcccEEEEEEccHHHHHHHHHH
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHT-GEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQT 142 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~ 142 (303)
.+++|.. .|++.|.++..-. |.+..+.+.+.... ...+|-.||.|.+.+.|.++++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455554 5666655544322 67777766554421 25788999999999999887754
No 259
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.65 E-value=82 Score=19.53 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=39.0
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH----HHHHHHHHH
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE----SEQLRAMTE 235 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~----~~A~~A~~~ 235 (303)
++.|.|+.-.-....|.+.+. ..-.|.++.+-.. .+.+-|.|+.. ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~-~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALS-KLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHh-cCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 467888888888899999998 7878888877444 34578888754 455555554
No 260
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=42.24 E-value=1.7e+02 Score=27.90 Aligned_cols=85 Identities=13% Similarity=0.244 Sum_probs=54.6
Q ss_pred cEEEEEEccHHHHHHHHHHhCCCCCCCCC------ceeE------eeecCCCC---CCCCCCCCCceEEEcCCCcccCHH
Q 022077 124 GYGFIEFISRAGAERVLQTFNGTPMPNGE------QNFR------LNWASFGA---GEKRDDTPDHTIFVGDLAADVTDY 188 (303)
Q Consensus 124 g~afv~f~~~~~a~~a~~~l~g~~~~~~~------~~i~------v~~~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~ 188 (303)
--||+++.+...-+--.+.|+...+..+. |.+- +.|+.... ........+..+|+.+|+.++-++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 36999999888777776777776654321 1110 11222111 011334567889999999999988
Q ss_pred HHHHHHhhhCCCcceEEEEee
Q 022077 189 MLQETFRARYPSTKGAKVVID 209 (303)
Q Consensus 189 ~l~~~f~~~~G~i~~~~i~~~ 209 (303)
-=.++.. .--.++++.|++.
T Consensus 317 VQ~~~ir-sipGlEna~i~rp 336 (621)
T COG0445 317 VQEQIIR-SIPGLENAEILRP 336 (621)
T ss_pred HHHHHHH-hCcccccceeecc
Confidence 7777776 6777888888755
No 261
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.00 E-value=28 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA 110 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~ 110 (303)
...+..+||+-|+|..+|++.|.++.+.+|.+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 4567789999999999999999999999986544
No 262
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.91 E-value=13 Score=33.26 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=48.9
Q ss_pred CcceEEEcCCCccCCHH--------HHHHHHhh--cCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHH
Q 022077 80 EIRTLWIGDLQYWMDET--------YLNTCFAH--TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~--------~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 140 (303)
..+.+|+.+.....+.+ ++...|.. .+.+..+...++..+..++|..|++|...+.+.++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34678888777665555 88888888 677778888888777788999999999999998876
No 263
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.47 E-value=68 Score=20.95 Aligned_cols=61 Identities=10% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 96 TYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 96 ~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
++|.+-|...|- |..+.-+..+.++.....-||+++...+...+ ++=..+ ++..+++.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l--~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTL--CGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhh--CCeEEEEecCC
Confidence 578888888886 67777777776667777889988776543332 233344 56667777544
No 264
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=39.64 E-value=1.1e+02 Score=20.35 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
-.+..+.-+||.....+.||.-.++....+ .-.|-..+.+|-.+|++.++. .-..+.|++-.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 567788888998888878999888776433 167888999999999998775 44455566544
No 265
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=2.6e+02 Score=25.43 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCceeC--CeeeEEeeccc
Q 022077 216 KGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMRIGPATN 253 (303)
Q Consensus 216 ~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~ 253 (303)
.-||.|++++.+.+......++|.++. +..+.++|.-.
T Consensus 258 yYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 258 YYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred eEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 358999999999999999999999875 44555666543
No 266
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=38.61 E-value=18 Score=32.67 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=8.3
Q ss_pred EEEEeCCHHHHHHH
Q 022077 219 GFVRFGDESEQLRA 232 (303)
Q Consensus 219 afV~f~~~~~A~~A 232 (303)
-|++|.-.|.-...
T Consensus 453 Dy~EfpvPEQfkt~ 466 (480)
T KOG2675|consen 453 DYVEFPVPEQFKTK 466 (480)
T ss_pred CcccccChHHHhhh
Confidence 46777766654433
No 267
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=37.27 E-value=29 Score=27.50 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=49.5
Q ss_pred cceEEEcCCCccCCH-----HHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 81 IRTLWIGDLQYWMDE-----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
..++++.++...+-. ....++|.+|....-.++++. .+..-|.|.+.+.|..|...+++..+.+ +..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~-~~~~ 82 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNG-KNEL 82 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCC-CceE
Confidence 345677777654422 233456666655444444443 3467889999999999999999999953 2377
Q ss_pred EeeecCCC
Q 022077 156 RLNWASFG 163 (303)
Q Consensus 156 ~v~~~~~~ 163 (303)
++-++...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77776543
No 268
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.56 E-value=76 Score=20.34 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=15.4
Q ss_pred HHHHHHHhhhCCCcceEEEE
Q 022077 188 YMLQETFRARYPSTKGAKVV 207 (303)
Q Consensus 188 ~~l~~~f~~~~G~i~~~~i~ 207 (303)
.+|+++|+ ..|.|.-+.+-
T Consensus 9 ~~iR~~fs-~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFS-QLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHH-hcCcEEEEEEc
Confidence 57999999 99999765554
No 269
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=36.54 E-value=37 Score=35.02 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 022077 1 MMQPAPG 7 (303)
Q Consensus 1 m~~ppp~ 7 (303)
|..-||+
T Consensus 1 ma~lppg 7 (2365)
T COG5178 1 MASLPPG 7 (2365)
T ss_pred CCCCCCC
Confidence 4444543
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.43 E-value=58 Score=22.17 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 215 TKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 215 ~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
.+||-|||=.+..+..+|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 58999999999999999988776544
No 271
>PRK10905 cell division protein DamX; Validated
Probab=36.11 E-value=1.3e+02 Score=26.39 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEE--EeCCHHHHHHHHHHhCC
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFV--RFGDESEQLRAMTEMNG 238 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~g 238 (303)
...+|-|+.+. +++.|+++.. +.| +....+......|+ ..|-++ .|.+.++|++|+..|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fak-Klg-L~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAK-KEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHH-HcC-CCceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCCH
Confidence 34566665544 4567777775 664 34444444433444 244443 79999999999998753
No 272
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=34.34 E-value=78 Score=22.25 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.7
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGD 225 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~ 225 (303)
+|++++|..-...|+-+++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777777665568889999999987
No 273
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.64 E-value=1.6e+02 Score=20.18 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=37.3
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcc--eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTK--GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
.++|..++..++-++|.+...+.|.-.. ...+.+-.+.|. .|+|.+.++-..|++...
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCC-----ceeecCHHHHHHHHHHHH
Confidence 4777788888887776666554444433 334433333454 488999999999987653
No 274
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=2e+02 Score=20.71 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=31.0
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeCC----CCCceeEEEEEeCCHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~ 231 (303)
...+.++|++.+...+|.=.++.++..-. .++++|||-| |+|.+.|..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 45678889888876788766655554432 3456677755 566666543
No 275
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=30.96 E-value=87 Score=21.47 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=29.5
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEeecccC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~ 254 (303)
+|.+++|..-...|+-+++|-|+|++. -.++|..+ +...+.|.+-..+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd~-------f~I~~ikVieg~~GlFVaMPs~k 51 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDDC-------FVIHDIKVIEGEKGLFVAMPSRK 51 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEE--EEE
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECCE-------EEEEeEEEEECCCCcEEECCCcC
Confidence 366788777666688899999999872 23455443 3344666654433
No 276
>CHL00030 rpl23 ribosomal protein L23
Probab=30.60 E-value=1.7e+02 Score=20.54 Aligned_cols=34 Identities=6% Similarity=-0.055 Sum_probs=24.7
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEee
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~ 209 (303)
-|+-.++...+..+|++.++..||. |..|..+.-
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4555678899999999999856765 556655544
No 277
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.33 E-value=1.9e+02 Score=20.03 Aligned_cols=47 Identities=11% Similarity=-0.062 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 187 ~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
.+.++++++...|+++++.+... ..-....+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHHH
Confidence 46788888755677888887644 445678889999999888875543
No 278
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=30.19 E-value=1.1e+02 Score=21.14 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=33.3
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-e-CCeeeEEeecccCC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-C-STRPMRIGPATNKK 255 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~-~g~~l~v~~~~~~~ 255 (303)
.|++++|-+-...|+-+.|+-|+|++. --+|+.. + +.+.|.|..-..+.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e-------fVvhdirVi~G~~GlfVAMPSrrt 52 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE-------FVVHDIRVIEGNNGLFVAMPSRRT 52 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce-------EEEeccEEEeCCcceEEEccCccC
Confidence 477888887777788899999999875 2246654 3 44566776544443
No 279
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.76 E-value=1.6e+02 Score=18.59 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 188 ~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
.+|.++|.+.-.+|.++.+.... . ++...+.+++.+.|.+++.. +|..
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 56778887455668888764432 2 45666677777777777765 5543
No 280
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.39 E-value=39 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=20.7
Q ss_pred HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCH
Q 022077 188 YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (303)
Q Consensus 188 ~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 226 (303)
|+|.+.|...||.-.. +-..+-|+||+|++.
T Consensus 89 edL~~EF~~~~~~~~~--------~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNII--------QPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccC--------CccCCCeeEEehhHH
Confidence 6777777656766321 123477999999874
No 281
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=28.22 E-value=57 Score=30.02 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=6.7
Q ss_pred EEEEEEccHH
Q 022077 125 YGFIEFISRA 134 (303)
Q Consensus 125 ~afv~f~~~~ 134 (303)
.|+|-|.+..
T Consensus 125 ~GlIAY~~~~ 134 (465)
T PF01690_consen 125 DGLIAYDNSS 134 (465)
T ss_pred eeeEEecCcc
Confidence 6677777654
No 282
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.84 E-value=48 Score=18.65 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHHhhcC
Q 022077 91 YWMDETYLNTCFAHTG 106 (303)
Q Consensus 91 ~~~t~~~l~~~f~~~g 106 (303)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998764
No 283
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=27.51 E-value=4.3e+02 Score=23.33 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCCccCCHHHHHHHH----hhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCC
Q 022077 88 DLQYWMDETYLNTCF----AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFG 163 (303)
Q Consensus 88 nLp~~~t~~~l~~~f----~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~ 163 (303)
|.+++-+-|.++..| ++||.-.++++.+... ..+|-+-|.|.-.-. +.+....+...++..++.
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~~ir----- 186 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERGEIEKIR----- 186 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCCCeEEEE-----
Confidence 566777777777754 7888866777766532 334445555533211 011111121122222222
Q ss_pred CCCCCCCCCCceEEEcCCCcccCHHHHH---HHHhhhCCCcceEEEEeeCCCCCceeEEEEEe
Q 022077 164 AGEKRDDTPDHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223 (303)
Q Consensus 164 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f 223 (303)
-..+..+|+..+.+.++. +.++ +. ...++.+..+...+.+.|++.+-+
T Consensus 187 ----------g~~~~~~l~~~va~r~~~~a~~~L~-~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 187 ----------GISHAANLPPHVAERQAEAAAALLR-KA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred ----------EEEEEccCCHHHHHHHHHHHHHHHh-hc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 256778999888776554 4454 41 223455555554566777765544
No 284
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.89 E-value=1.9e+02 Score=19.08 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=43.3
Q ss_pred cCCCcccCHHHHHHHHhhhCCCc-ceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 179 GDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 179 ~nl~~~~~~~~l~~~f~~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
-.++..++-++|++.....||.- ..+.+.+-...| -.|...+.++-..|+..+... +++.|++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 45666778888888887677775 445555443233 579999999999999876533 44455554
No 285
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=26.42 E-value=1.8e+02 Score=20.44 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=25.0
Q ss_pred HHHHHhhcCC---ceEEEEEecCCCCCcccEEEEEEccHHHHHHHH
Q 022077 98 LNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (303)
Q Consensus 98 l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 140 (303)
....|++||. +..-.+..-...........|+|.+.+.|..+.
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 3456778876 121111111112344458999999999988775
No 286
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=26.41 E-value=99 Score=21.21 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=19.4
Q ss_pred CCCceEEEcCC-------------CcccCHHHHHHHHhhhCCCc
Q 022077 171 TPDHTIFVGDL-------------AADVTDYMLQETFRARYPST 201 (303)
Q Consensus 171 ~~~~~l~v~nl-------------~~~~~~~~l~~~f~~~~G~i 201 (303)
...+.|||.+. ....+.|++.+++. .|..+
T Consensus 35 ~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~-~y~~l 77 (85)
T PF12091_consen 35 NARREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLG-GYDAL 77 (85)
T ss_pred CCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHH
Confidence 44567888774 34566777777776 66543
No 287
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=26.32 E-value=91 Score=21.66 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=32.6
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCC----CCCc------eeEEEEEeCCH
Q 022077 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRL----TGRT------KGYGFVRFGDE 226 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~----~~~~------~g~afV~f~~~ 226 (303)
+.-.++.+.+..||+++++..||. |.+|..+.-.. .|.. ..-|+|++...
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 444678899999999999977876 55666554431 1111 13578887665
No 288
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=24.99 E-value=95 Score=21.88 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=17.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHh
Q 022077 216 KGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 216 ~g~afV~f~~~~~A~~A~~~l 236 (303)
--|+.++|.+.+++.+|...+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 457889999999988887654
No 289
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=24.98 E-value=2.3e+02 Score=22.10 Aligned_cols=35 Identities=0% Similarity=0.037 Sum_probs=26.3
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEee
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~ 209 (303)
..|+..++...+..+|++.|+..||. |..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 35666788999999999999866765 556665543
No 290
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.76 E-value=83 Score=28.12 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=45.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcce-EEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~-~~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
-+.+.|.+||..++++++.+.+. .|-.-.. ..+.....+ ..-.+.|+|.|.+.++...-....+|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46788999999999999988886 6544222 222211111 11245699999999997777777777664
No 291
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.99 E-value=63 Score=29.44 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=3.7
Q ss_pred EEeCCHHH
Q 022077 221 VRFGDESE 228 (303)
Q Consensus 221 V~f~~~~~ 228 (303)
|.|++.-.
T Consensus 385 vVfD~~Va 392 (480)
T KOG2675|consen 385 VVFDDLVA 392 (480)
T ss_pred EEEeccce
Confidence 44554433
No 292
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=7.6e+02 Score=24.93 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCccc-ccccCCCCCCCCCCCCCCCC
Q 022077 1 MMQPAPGAVPPPPPPMAAHQYQYQQQAPPQQQPPPQPSPYMMMMPPQPQA--QPPAMWA-TQAAAPQAAGVAVPPQQQGQ 77 (303)
Q Consensus 1 m~~ppp~~~pppp~p~~~~~~~~~~~~pp~~~~pp~~pp~~~~~pp~p~~--p~p~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (303)
+..++-|..+|-=.-...+++.++.++|++++.--+++++++.+.+++.- ++-.... .++...+..+.++++-...-
T Consensus 77 ~~~~~~p~~~~Sy~~~~~p~p~~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~lttlpp~pl~~p~ 156 (887)
T KOG1985|consen 77 LQLPNAPVGPPSYQQLQAPTPAQQQQQPPPPPQVGSQPPQMGPPAPPPMNALQPVDLPNQLPPGINQLTTLPPPPLEIPV 156 (887)
T ss_pred CCCCCCCCCCcchhhccCCCCcccCCCCCCCCccCCCCCCCCCCCCCcccccCccccccCCCCCccccccCCCCCCCCCc
Q ss_pred CCCcceEEEcCCCccCCHHHHHH------HHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNT------CFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPN 150 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~------~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~ 150 (303)
+.......-.|.+.+.-...|.. ++++.+-...+.+..-.+...-.--..++=...-.+++|...+|-.. |..
T Consensus 157 ~~~~~~~~~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~d~~~~p~~~~~~IvRCr~CRtYiNPFV~fid 236 (887)
T KOG1985|consen 157 PNLVTPSESSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLDDIDPLPVITSTLIVRCRRCRTYINPFVEFID 236 (887)
T ss_pred ccccCCccccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeecccccccCCCCcccCCceeeehhhhhhcCCeEEecC
Q ss_pred CCceeEeeecCCCCCCCCC------------------------------------CCCCceEEEcCCCcccCHH-HHHHH
Q 022077 151 GEQNFRLNWASFGAGEKRD------------------------------------DTPDHTIFVGDLAADVTDY-MLQET 193 (303)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~~------------------------------------~~~~~~l~v~nl~~~~~~~-~l~~~ 193 (303)
.|+.++++.+...+....+ -.+..-+||-.+.....+. -|...
T Consensus 237 ~gr~WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~ 316 (887)
T KOG1985|consen 237 QGRRWRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETV 316 (887)
T ss_pred CCceeeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHH
Q ss_pred HhhhCCCcceEEEEeeCCCCCceeEEEEEeCC
Q 022077 194 FRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD 225 (303)
Q Consensus 194 f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 225 (303)
.+..-+.+..+- ...+ ..+|||.|++
T Consensus 317 ~~slL~~LD~lp-gd~R-----t~igfi~fDs 342 (887)
T KOG1985|consen 317 ARSLLENLDALP-GDPR-----TRIGFITFDS 342 (887)
T ss_pred HHHHHHhhhcCC-CCCc-----ceEEEEEeec
No 293
>PF14893 PNMA: PNMA
Probab=23.69 E-value=83 Score=27.82 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=45.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..+.|.|.+||.++++++|.+.+....-.+-..+|.... ....+..-|+|+|...-+-...=.. ..-.|...+|-|
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~Vv~ 93 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRVVF 93 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchh---cCCCCCceEEEe
Confidence 346799999999999999999886323223233332110 0111234688988554321111111 223567778777
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
.....+.
T Consensus 94 ~p~~~D~ 100 (331)
T PF14893_consen 94 KPPAPDA 100 (331)
T ss_pred cCCCCCH
Confidence 6655443
No 294
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=23.56 E-value=4.1e+02 Score=25.41 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=56.2
Q ss_pred EEEEEEccHHHHHHHHHHhCCCCCCCCC-ceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHH-H---HHHhhhCC
Q 022077 125 YGFIEFISRAGAERVLQTFNGTPMPNGE-QNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYML-Q---ETFRARYP 199 (303)
Q Consensus 125 ~afv~f~~~~~a~~a~~~l~g~~~~~~~-~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l-~---~~f~~~~G 199 (303)
.-||+-.+..+...|++.....-..|+| .-+.|...+-..+-.-+..-++.+..-++|+..|+.-+ + +++.++|+
T Consensus 564 L~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~ 643 (755)
T KOG1131|consen 564 LLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQ 643 (755)
T ss_pred eEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhc
Confidence 3455555555444554432222222222 22344443332222233344567777799999988543 2 23333332
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HHhCCceeCCeee
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM-TEMNGVFCSTRPM 246 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~-~~l~g~~~~g~~l 246 (303)
. +..-|++|+-.-.|..++ ..|.|+.=.|..|
T Consensus 644 i---------------rE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI 676 (755)
T KOG1131|consen 644 I---------------RENDFLTFDAMRHAAQCLGRVLRGKTDYGLMI 676 (755)
T ss_pred c---------------cccceechHhHHHHHHHHHHHHhccccceeeE
Confidence 2 335799999888888888 6666665444433
No 295
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.20 E-value=1.4e+02 Score=28.11 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=42.9
Q ss_pred ceEEEcCCCcccCH---HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 174 HTIFVGDLAADVTD---YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 174 ~~l~v~nl~~~~~~---~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
.-=.||||..-... .-+.++-+ +||.|-.+++-. .-.|.-.+.+.|..|+.. |+..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~-~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSK-KYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHH-HhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 34467777653332 33444443 899998777621 246788899999999986 8899999886
No 296
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=65 Score=30.18 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=35.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCC
Q 022077 216 KGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 216 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
..++++.|++.+.+.+|+..++|....+..+++..+.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG 103 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc
Confidence 56899999999999999999999999998888887666443
No 297
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=22.91 E-value=4.1e+02 Score=21.40 Aligned_cols=149 Identities=11% Similarity=0.018 Sum_probs=70.7
Q ss_pred EEEcC--CCccCCHHHHHHHH-hhcCCceEEEEEecCCCC-----------CcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 84 LWIGD--LQYWMDETYLNTCF-AHTGEVVAVKVIRNKQTG-----------QIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 84 l~v~n--Lp~~~t~~~l~~~f-~~~g~i~~~~~~~~~~~~-----------~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
+|... .| +|+++|+.+- ++.. +..-.++.|-..| ..++.+| -++..++|.+.++ .|-..|.
T Consensus 8 ~F~~~~~~p--~TK~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~-AIe~~~~a~~~~~-~N~~~fg 82 (187)
T COG2242 8 LFERDEGGP--MTKEEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVI-AIERDEEALELIE-RNAARFG 82 (187)
T ss_pred hhccCCCCC--CcHHHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEE-EEecCHHHHHHHH-HHHHHhC
Confidence 44444 55 7889998753 4332 2222233332111 1222233 2344444444443 2444552
Q ss_pred CCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHH
Q 022077 150 NGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (303)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 229 (303)
...+.+-...-..... .......+|||+= -+.++|.+.+. .+-. .-|--.+.+.+.|.+
T Consensus 83 --~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg---~~i~~ile~~~-~~l~--------------~ggrlV~naitlE~~ 141 (187)
T COG2242 83 --VDNLEVVEGDAPEALP-DLPSPDAIFIGGG---GNIEEILEAAW-ERLK--------------PGGRLVANAITLETL 141 (187)
T ss_pred --CCcEEEEeccchHhhc-CCCCCCEEEECCC---CCHHHHHHHHH-HHcC--------------cCCeEEEEeecHHHH
Confidence 3333333332222211 1225678999876 44555555554 2100 012233445555555
Q ss_pred HHHHHHhCCceeCCeeeEEeecccCCCCCC
Q 022077 230 LRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 230 ~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
..|++.|...-+. ..++|.+++.++..+.
T Consensus 142 ~~a~~~~~~~g~~-ei~~v~is~~~~lg~~ 170 (187)
T COG2242 142 AKALEALEQLGGR-EIVQVQISRGKPLGGG 170 (187)
T ss_pred HHHHHHHHHcCCc-eEEEEEeecceeccCe
Confidence 5555555444333 7788888887776544
No 298
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.85 E-value=97 Score=27.71 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=47.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCCC--CCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
...+.+.|..||...++.+|.+.+..+-. +....+...... ..-.+.+||.|...++.....+.++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34567899999999999999888777543 222222211100 11245789999999998888888888765
No 299
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.59 E-value=2e+02 Score=25.00 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=34.4
Q ss_pred EEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHh
Q 022077 126 GFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFR 195 (303)
Q Consensus 126 afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 195 (303)
|||.|++..+|..|++.+.... ...+++..+... +.+.=.||..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCCc----------ccccccccCCChHHHHHHHHHH
Confidence 7999999999999998654433 233455544322 2344457766655555555543
No 300
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.41 E-value=14 Score=33.43 Aligned_cols=66 Identities=6% Similarity=-0.166 Sum_probs=47.7
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
..-|+..++...+++++.-+|..||.|..+...+..+.+..+-.+|+..... ++..++..+.-..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~ 69 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTT 69 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhh
Confidence 3457778999999999999999999988777777666667777888876553 44555544433333
No 301
>PHA00742 hypothetical protein
Probab=22.32 E-value=55 Score=25.56 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=36.9
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcce----EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKG----AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~----~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
-+||.--..++++|+-++ +||+-.. .++-...........-||.|.+.|+-.+++.+|.-..+
T Consensus 91 l~~IDitGSswteeqSke----RYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isALqilNL 157 (211)
T PHA00742 91 LVWIDITGSSWTEEQSKE----RYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISALQILNL 157 (211)
T ss_pred eEEEEccCCccchhhhHH----hcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHHHHhhh
Confidence 356655566778775543 5665332 22222211222233579999999998888887764443
No 302
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=22.12 E-value=3.3e+02 Score=21.03 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=37.3
Q ss_pred eEEEcCCCc-ccCHHHHHHHHhhhCCCcce-EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 175 TIFVGDLAA-DVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 175 ~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
..|+|+|.. ..+-++|+..+...|+...+ +++-.. ...+-++|+|.-.-+|..-++.|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~----~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKV----EPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeecc----ccCceEEEEEechHHHHHHHHHHh
Confidence 356777762 22346677777645555433 333222 234579999999999998888773
No 303
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=21.86 E-value=2.4e+02 Score=19.28 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=24.2
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCC----HHHHHHHHHHhCCceeCCeeeEEe
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
|.+++|...--. ++.-.++ +-..|=++.| +|..+ .|||.|+. .+....+++.+....+.-+.|.|.
T Consensus 3 lkfg~It~eeA~-~~QYeLs-k~~~vyRvFi-----NgYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELS-KNEAVYRVFI-----NGYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTT-TTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHH-HHHHHhh-cccceeeeee-----ccccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 344555443222 2333344 5556655555 34444 48999974 578888888888888877777764
No 304
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=21.67 E-value=5.7e+02 Score=22.61 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCccCCHHHHHHH----HhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCC
Q 022077 88 DLQYWMDETYLNTC----FAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFG 163 (303)
Q Consensus 88 nLp~~~t~~~l~~~----f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~ 163 (303)
|.+++-+-|.++.. ++++|.-.++++.+..- ..+|=+-|.|.-.-. +.+....+..+++..++.
T Consensus 121 ~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GGGeV~~~i~p~-----~~l~~i~l~~~G~i~~i~----- 188 (326)
T TIGR03399 121 DVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGF--YPRGGGEVRLRVEPV-----KKLKPLELEERGELLRVS----- 188 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEccc-----cCCCceeeecCCceEEEE-----
Confidence 56677777877774 47889877777776532 233445555533211 112222222233333332
Q ss_pred CCCCCCCCCCceEEEcCCCcccCHHH---HHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEe
Q 022077 164 AGEKRDDTPDHTIFVGDLAADVTDYM---LQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRF 223 (303)
Q Consensus 164 ~~~~~~~~~~~~l~v~nl~~~~~~~~---l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f 223 (303)
...+..+|+..+-+.+ .++.+. .++.-.++.+... ..+.+.|++++-+
T Consensus 189 ----------g~~~~~~l~~~va~r~~~~a~~~L~-~~~~~~~i~~~~~-~~~~s~G~~i~L~ 239 (326)
T TIGR03399 189 ----------GIAHAANLPAHVAERMAKAAREELR-KLGLDPEIEIEVL-DKGLGPGSGIVLW 239 (326)
T ss_pred ----------EEEEEccCCHHHHHHHHHHHHHHHH-hhCCCceEEEEec-cCCCCCcEEEEEE
Confidence 2567789998887654 445555 5554334443331 3456667665544
No 305
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=21.60 E-value=2.6e+02 Score=18.75 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCc-ccCHHHHHHH
Q 022077 134 AGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAA-DVTDYMLQET 193 (303)
Q Consensus 134 ~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~ 193 (303)
.+...+++.+ |..+. .+..|+|--.+ .....+.|-..|. .+++++|..+
T Consensus 25 ~DPraaL~e~-G~~~P-~~~~i~VvE~t---------~~~~~lVlP~~P~~~lse~~L~~v 74 (77)
T TIGR03793 25 TNPKEALERE-GVQVP-AEVEVKVVEES---------PTVLYLVLPVNPDIELTDEQLDAV 74 (77)
T ss_pred HCHHHHHHHh-CCCCC-CceEEEEEEcC---------CCeEEEEecCCCCCCCCHHHHHHh
Confidence 4566778777 87776 56677776443 2345566655555 7899988765
No 306
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=21.34 E-value=2.7e+02 Score=19.68 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=42.9
Q ss_pred ceEEEcCCCcccC--HHHHHHHHhhhCCCcceEEEEeeCC-CCCceeEEEEEeCC--HHHHHHHHHHhCCcee-CCeeeE
Q 022077 174 HTIFVGDLAADVT--DYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGD--ESEQLRAMTEMNGVFC-STRPMR 247 (303)
Q Consensus 174 ~~l~v~nl~~~~~--~~~l~~~f~~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~--~~~A~~A~~~l~g~~~-~g~~l~ 247 (303)
..|.|+-...... .+.|.++|+ +.+.|..+.+..-.. .+...-+--|+|.. .+....++..+-...+ ++..|.
T Consensus 6 ~~v~l~~P~~~p~~l~~aL~~~~~-~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd 84 (108)
T PF14581_consen 6 EKVLLGEPEEEPTDLLAALSEYFK-QHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVD 84 (108)
T ss_pred CEEEecCCccCHHHHHHHHHHHHh-hCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEE
Confidence 4556654433333 478999998 999999876554443 33434444557766 3333344433332323 336666
Q ss_pred Eeecc
Q 022077 248 IGPAT 252 (303)
Q Consensus 248 v~~~~ 252 (303)
+-...
T Consensus 85 ~~~~~ 89 (108)
T PF14581_consen 85 FVLLD 89 (108)
T ss_pred EEEcc
Confidence 65544
No 307
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=15 Score=33.21 Aligned_cols=78 Identities=5% Similarity=-0.202 Sum_probs=56.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
.+.|+..++...+++++.-+|. -||.|..+...+....+..+-.+||+-.+ ++|..++..+....+.|..++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~-d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHE-DPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhcc-CCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567788899999999999998 89999887766655455556677877644 355666666655666777777777654
No 308
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.10 E-value=2.6e+02 Score=22.34 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=39.0
Q ss_pred cCHHHHHHHHhhhCCCcceEEEEeeCCCC--CceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 185 VTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.+++.|.++..=.-|.+.++..-+.. .+ ..+|-.||+|.+.+.|.+.+.. ++....-..|...|
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 55555554442122677776654443 22 4578899999999999988764 44444444444444
No 309
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.49 E-value=3e+02 Score=18.98 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=37.2
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
+.+-.++.+++-++|.+-+.++||--..+.|-+-.+ | .+|+..+.++-+.|+...
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a 67 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTA 67 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHH
Confidence 333467888888888777776776645555554432 3 578888888877777653
No 310
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.05 E-value=3.1e+02 Score=19.04 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=24.6
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEee
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVID 209 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~ 209 (303)
-++-.++...+..+|++.|+..||. |.+|..+.-
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 4444678899999999999866765 556655544
Done!