Query 022077
Match_columns 303
No_of_seqs 292 out of 2744
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 8.1E-38 2.8E-42 257.6 19.0 171 80-257 14-184 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 2.2E-36 7.4E-41 245.8 21.4 179 77-260 9-189 (196)
3 3md3_A Nuclear and cytoplasmic 100.0 3.2E-36 1.1E-40 238.1 21.2 166 82-253 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.5E-36 1.2E-40 238.5 20.7 165 80-251 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 6.1E-36 2.1E-40 236.7 21.4 164 81-251 2-167 (167)
6 2qfj_A FBP-interacting repress 100.0 5.6E-36 1.9E-40 247.0 19.4 176 79-257 26-208 (216)
7 3nmr_A Cugbp ELAV-like family 100.0 8.6E-35 2.9E-39 232.0 21.0 168 80-252 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 4.2E-36 1.4E-40 237.9 12.7 165 80-254 2-166 (167)
9 3smz_A Protein raver-1, ribonu 100.0 1.6E-34 5.5E-39 248.3 22.0 184 80-302 21-207 (284)
10 2ghp_A U4/U6 snRNA-associated 100.0 4.6E-34 1.6E-38 246.4 19.8 194 76-302 36-233 (292)
11 2yh0_A Splicing factor U2AF 65 100.0 1.8E-34 6.3E-39 234.7 13.7 167 80-256 3-196 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 3.1E-33 1.1E-37 222.3 19.4 159 80-252 3-172 (172)
13 3smz_A Protein raver-1, ribonu 100.0 5.9E-33 2E-37 238.5 22.0 173 80-257 94-267 (284)
14 3pgw_A U1-A; protein-RNA compl 100.0 1E-32 3.5E-37 236.8 21.3 165 77-252 5-281 (282)
15 3tyt_A Heterogeneous nuclear r 100.0 5.1E-33 1.8E-37 226.8 18.1 162 80-251 3-204 (205)
16 1fje_B Nucleolin RBD12, protei 100.0 4.3E-34 1.5E-38 228.1 11.4 166 77-254 9-174 (175)
17 2adc_A Polypyrimidine tract-bi 100.0 2.6E-32 8.9E-37 227.1 19.3 163 79-254 32-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-32 9.8E-37 235.1 17.4 170 80-254 116-291 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 4.1E-32 1.4E-36 221.0 16.6 162 80-254 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 5.6E-31 1.9E-35 223.3 21.1 161 77-257 18-182 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.5E-25 8.5E-30 174.3 15.2 146 110-258 2-154 (158)
22 2i2y_A Fusion protein consists 99.9 9.2E-24 3.2E-28 163.8 11.7 127 120-255 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 8E-23 2.7E-27 151.1 11.2 106 173-295 5-111 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.6E-22 5.4E-27 145.2 11.8 82 171-253 17-98 (99)
25 4f25_A Polyadenylate-binding p 99.9 3.9E-22 1.3E-26 147.4 10.4 106 80-189 4-113 (115)
26 2lea_A Serine/arginine-rich sp 99.9 4.1E-22 1.4E-26 151.3 8.0 127 125-259 6-132 (135)
27 2lxi_A RNA-binding protein 10; 99.9 6.6E-22 2.3E-26 139.7 7.5 84 173-257 1-86 (91)
28 3s8s_A Histone-lysine N-methyl 99.9 3.4E-21 1.2E-25 140.8 11.4 85 171-256 4-88 (110)
29 1rk8_A CG8781-PA, CG8781-PA pr 99.9 4E-21 1.4E-25 151.2 11.8 131 128-259 11-157 (165)
30 4fxv_A ELAV-like protein 1; RN 99.8 9.9E-21 3.4E-25 135.7 10.8 81 79-161 17-97 (99)
31 4f02_A Polyadenylate-binding p 99.8 5.9E-21 2E-25 156.7 10.7 112 170-302 12-125 (213)
32 3md1_A Nuclear and cytoplasmic 99.8 1.9E-20 6.6E-25 130.0 11.6 82 173-255 1-82 (83)
33 2dgo_A Cytotoxic granule-assoc 99.8 5.9E-20 2E-24 135.7 14.8 92 167-259 9-100 (115)
34 2lkz_A RNA-binding protein 5; 99.8 3.4E-21 1.2E-25 136.6 7.8 82 171-253 7-94 (95)
35 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.6E-25 131.5 11.0 83 171-254 4-86 (87)
36 2x1f_A MRNA 3'-END-processing 99.8 1.8E-20 6.1E-25 133.9 10.5 85 172-257 1-85 (96)
37 2cq0_A Eukaryotic translation 99.8 2.9E-20 1E-24 134.5 11.7 90 168-258 10-99 (103)
38 2cpz_A CUG triplet repeat RNA- 99.8 4.4E-20 1.5E-24 136.4 12.9 90 168-258 20-109 (115)
39 2dnz_A Probable RNA-binding pr 99.8 2.5E-20 8.6E-25 132.8 11.2 87 171-258 3-89 (95)
40 2do4_A Squamous cell carcinoma 99.8 6E-20 2E-24 132.2 13.2 88 168-257 12-99 (100)
41 1fxl_A Paraneoplastic encephal 99.8 3.6E-20 1.2E-24 145.7 12.6 107 173-302 2-110 (167)
42 1x5t_A Splicing factor 3B subu 99.8 3E-20 1E-24 132.7 11.0 88 171-259 3-91 (96)
43 3p5t_L Cleavage and polyadenyl 99.8 9.5E-21 3.3E-25 133.6 8.3 82 174-256 2-85 (90)
44 2cqc_A Arginine/serine-rich sp 99.8 5.3E-20 1.8E-24 131.1 12.2 85 168-253 10-94 (95)
45 1whw_A Hypothetical protein ri 99.8 3.6E-20 1.2E-24 133.1 11.2 88 170-258 5-92 (99)
46 1b7f_A Protein (SXL-lethal pro 99.8 2.6E-20 8.9E-25 146.9 11.3 108 172-302 2-111 (168)
47 2div_A TRNA selenocysteine ass 99.8 5.6E-20 1.9E-24 132.1 11.9 87 170-257 6-97 (99)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.7E-20 1.3E-24 133.7 11.0 90 169-259 8-97 (102)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.3E-20 1.1E-24 129.4 10.1 82 170-252 4-85 (85)
50 2dgs_A DAZ-associated protein 99.8 7.3E-20 2.5E-24 131.5 11.9 88 169-258 6-93 (99)
51 1x4h_A RNA-binding protein 28; 99.8 7.8E-20 2.7E-24 134.2 12.3 91 168-259 10-106 (111)
52 2jrs_A RNA-binding protein 39; 99.8 5.2E-20 1.8E-24 134.3 11.2 87 168-255 21-107 (108)
53 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.5E-24 131.6 13.3 89 168-258 10-101 (105)
54 1x5u_A Splicing factor 3B subu 99.8 5E-20 1.7E-24 133.8 11.0 89 168-257 10-98 (105)
55 1p27_B RNA-binding protein 8A; 99.8 5.9E-20 2E-24 133.7 10.9 86 170-256 20-105 (106)
56 2dnm_A SRP46 splicing factor; 99.8 4.9E-20 1.7E-24 133.4 10.3 90 168-258 8-97 (103)
57 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.7E-24 131.6 12.1 89 168-259 10-98 (103)
58 2fy1_A RNA-binding motif prote 99.8 1.2E-19 4E-24 134.1 12.5 87 170-258 4-90 (116)
59 1l3k_A Heterogeneous nuclear r 99.8 5.3E-20 1.8E-24 148.8 11.6 116 169-302 9-126 (196)
60 2cpf_A RNA binding motif prote 99.8 7E-20 2.4E-24 131.3 11.0 87 171-258 3-92 (98)
61 1x5s_A Cold-inducible RNA-bind 99.8 6.5E-20 2.2E-24 132.5 10.8 88 169-257 8-95 (102)
62 2cph_A RNA binding motif prote 99.8 1E-19 3.6E-24 132.6 12.0 90 168-258 10-101 (107)
63 3ns6_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 135.3 7.1 84 171-255 4-94 (100)
64 2e5h_A Zinc finger CCHC-type a 99.8 8.7E-20 3E-24 129.8 10.9 84 168-252 11-94 (94)
65 2la6_A RNA-binding protein FUS 99.8 1.6E-19 5.4E-24 129.7 12.3 84 168-252 8-99 (99)
66 2kxn_B Transformer-2 protein h 99.8 6.5E-20 2.2E-24 138.0 10.7 88 168-256 41-128 (129)
67 2dng_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 130.7 12.2 88 168-258 10-97 (103)
68 2cpe_A RNA-binding protein EWS 99.8 1.5E-19 5E-24 133.1 12.3 90 168-258 10-107 (113)
69 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-19 6.7E-24 137.5 13.3 91 168-259 37-127 (139)
70 2dhg_A TRNA selenocysteine ass 99.8 1.4E-19 4.7E-24 131.2 11.6 89 169-259 5-95 (104)
71 2dgp_A Bruno-like 4, RNA bindi 99.8 8.7E-20 3E-24 132.8 10.5 90 168-258 8-100 (106)
72 1oo0_B CG8781-PA, drosophila Y 99.8 9.6E-20 3.3E-24 133.5 10.4 88 169-257 22-109 (110)
73 2kt5_A RNA and export factor-b 99.8 3E-19 1E-23 133.7 13.3 87 169-257 31-117 (124)
74 3tyt_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 146.6 13.0 124 172-301 3-144 (205)
75 3md3_A Nuclear and cytoplasmic 99.8 9.4E-20 3.2E-24 143.2 10.9 106 174-301 1-108 (166)
76 3s8s_A Histone-lysine N-methyl 99.8 1.6E-19 5.6E-24 131.8 11.2 81 80-162 5-85 (110)
77 4a8x_A RNA-binding protein wit 99.8 1E-19 3.4E-24 127.8 9.5 84 172-256 3-87 (88)
78 2cqp_A RNA-binding protein 12; 99.8 2.2E-19 7.6E-24 128.7 11.3 85 170-255 12-96 (98)
79 3n9u_C Cleavage and polyadenyl 99.8 1.2E-19 4.2E-24 140.9 10.6 83 172-255 54-138 (156)
80 2dh8_A DAZ-associated protein 99.8 1.8E-19 6.1E-24 130.9 10.8 89 168-258 11-99 (105)
81 1sjq_A Polypyrimidine tract-bi 99.8 1E-19 3.5E-24 130.4 9.2 83 170-259 13-97 (105)
82 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-19 6.4E-24 130.5 10.8 88 168-258 10-98 (104)
83 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-18 5.4E-23 132.4 16.5 86 78-165 39-124 (139)
84 2cq3_A RNA-binding protein 9; 99.8 6.9E-19 2.4E-23 127.3 13.6 89 168-259 10-98 (103)
85 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.5E-19 1.9E-23 127.8 13.0 88 168-258 10-97 (103)
86 1p1t_A Cleavage stimulation fa 99.8 1.7E-19 5.7E-24 130.8 10.2 85 172-257 7-91 (104)
87 2cqd_A RNA-binding region cont 99.8 4.8E-19 1.7E-23 131.0 12.7 88 168-257 12-99 (116)
88 3ucg_A Polyadenylate-binding p 99.8 2.3E-19 7.9E-24 126.2 10.3 81 173-255 6-86 (89)
89 2ywk_A Putative RNA-binding pr 99.8 2.3E-19 7.9E-24 127.8 10.3 83 169-253 12-94 (95)
90 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.8E-24 134.9 8.9 84 168-252 35-118 (118)
91 2dgv_A HnRNP M, heterogeneous 99.8 3.5E-19 1.2E-23 126.1 11.1 85 170-257 5-89 (92)
92 2m2b_A RNA-binding protein 10; 99.8 8.9E-20 3.1E-24 137.9 8.5 89 168-258 18-112 (131)
93 2dgw_A Probable RNA-binding pr 99.8 7.2E-19 2.5E-23 124.2 12.4 83 170-256 7-89 (91)
94 3r27_A HnRNP L, heterogeneous 99.8 2E-19 6.7E-24 127.6 9.3 81 168-255 16-98 (100)
95 2la6_A RNA-binding protein FUS 99.8 6.2E-19 2.1E-23 126.6 12.1 81 79-161 11-99 (99)
96 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4.2E-23 125.9 13.7 89 167-258 9-97 (103)
97 3ulh_A THO complex subunit 4; 99.8 4.9E-19 1.7E-23 129.0 11.6 82 169-252 25-106 (107)
98 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-19 1.2E-23 127.1 10.6 83 170-256 6-92 (96)
99 2do0_A HnRNP M, heterogeneous 99.8 1.6E-18 5.6E-23 127.7 14.2 89 168-258 10-98 (114)
100 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-18 4.5E-23 128.4 13.7 87 77-165 21-107 (115)
101 1x5u_A Splicing factor 3B subu 99.8 1.1E-18 3.9E-23 126.6 13.1 87 77-165 11-97 (105)
102 2hvz_A Splicing factor, argini 99.8 1.6E-19 5.5E-24 130.1 8.4 78 174-257 1-78 (101)
103 2ek1_A RNA-binding protein 12; 99.8 2.4E-19 8.2E-24 127.7 9.2 82 171-253 13-94 (95)
104 2cq1_A PTB-like protein L; RRM 99.8 6.7E-19 2.3E-23 126.2 11.5 85 167-258 9-95 (101)
105 3s7r_A Heterogeneous nuclear r 99.8 5.9E-19 2E-23 123.5 10.8 82 168-251 6-87 (87)
106 3nmr_A Cugbp ELAV-like family 99.8 4.3E-19 1.5E-23 140.7 11.4 109 172-302 2-117 (175)
107 2lxi_A RNA-binding protein 10; 99.8 7.8E-20 2.7E-24 129.0 6.1 83 81-165 1-85 (91)
108 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.5E-23 127.5 13.9 88 76-165 10-97 (115)
109 1s79_A Lupus LA protein; RRM, 99.8 2E-19 6.9E-24 129.7 8.4 82 169-253 7-88 (103)
110 2rs2_A Musashi-1, RNA-binding 99.8 3.2E-19 1.1E-23 130.3 9.5 87 169-257 21-107 (109)
111 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.9E-19 3.1E-23 136.5 12.6 88 169-257 35-122 (156)
112 2ad9_A Polypyrimidine tract-bi 99.8 5.9E-19 2E-23 129.6 10.8 84 168-258 26-111 (119)
113 1x4d_A Matrin 3; structural ge 99.8 2.6E-19 9E-24 128.2 8.7 83 168-257 10-95 (102)
114 2cpi_A CCR4-NOT transcription 99.8 4E-19 1.4E-23 130.3 9.9 88 168-256 10-103 (111)
115 2err_A Ataxin-2-binding protei 99.8 4.3E-19 1.5E-23 129.6 9.9 85 168-255 24-108 (109)
116 3ex7_B RNA-binding protein 8A; 99.8 3.9E-19 1.3E-23 133.5 9.9 90 169-259 18-107 (126)
117 2lkz_A RNA-binding protein 5; 99.8 1.9E-19 6.4E-24 127.6 7.6 85 78-162 6-94 (95)
118 2cqc_A Arginine/serine-rich sp 99.8 1.3E-18 4.3E-23 123.9 12.0 85 76-162 10-94 (95)
119 2mss_A Protein (musashi1); RNA 99.8 1.8E-19 6.2E-24 122.5 7.2 75 175-251 1-75 (75)
120 1x4e_A RNA binding motif, sing 99.8 8.1E-20 2.8E-24 127.4 5.5 82 171-253 3-84 (85)
121 2wbr_A GW182, gawky, LD47780P; 99.8 3.4E-19 1.2E-23 121.8 8.2 74 173-253 7-80 (89)
122 2qfj_A FBP-interacting repress 99.8 1.1E-19 3.8E-24 149.2 6.7 119 172-302 27-147 (216)
123 2jwn_A Embryonic polyadenylate 99.8 8.5E-19 2.9E-23 131.2 11.0 84 172-257 35-118 (124)
124 2khc_A Testis-specific RNP-typ 99.8 1.2E-18 4E-23 129.3 11.6 83 77-161 36-118 (118)
125 1wex_A Hypothetical protein (r 99.8 1E-18 3.5E-23 126.0 10.8 83 168-257 10-94 (104)
126 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.7E-19 3E-23 122.7 10.2 82 79-162 4-85 (87)
127 2dis_A Unnamed protein product 99.8 6.7E-19 2.3E-23 128.7 10.0 86 171-257 6-95 (109)
128 3lqv_A PRE-mRNA branch site pr 99.8 5.3E-19 1.8E-23 130.5 9.5 104 79-200 6-109 (115)
129 1whw_A Hypothetical protein ri 99.8 1.7E-18 5.9E-23 124.2 11.9 86 78-165 5-90 (99)
130 3pgw_S U1-70K; protein-RNA com 99.8 9E-20 3.1E-24 164.3 6.3 87 170-257 99-185 (437)
131 2jrs_A RNA-binding protein 39; 99.8 2.5E-18 8.7E-23 125.2 12.9 85 77-163 22-106 (108)
132 2dnz_A Probable RNA-binding pr 99.8 2.7E-18 9.4E-23 122.2 12.8 84 79-164 3-86 (95)
133 1x4a_A Splicing factor, argini 99.8 1.6E-18 5.3E-23 126.7 11.7 85 169-257 18-102 (109)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-19 4.7E-24 130.2 5.9 83 170-255 16-99 (100)
135 2dnh_A Bruno-like 5, RNA bindi 99.8 3.8E-18 1.3E-22 123.8 13.7 87 78-165 12-99 (105)
136 3n9u_C Cleavage and polyadenyl 99.8 7.1E-19 2.4E-23 136.6 10.3 81 79-161 53-135 (156)
137 2cph_A RNA binding motif prote 99.8 3.6E-18 1.2E-22 124.4 13.4 87 77-165 11-99 (107)
138 2dgs_A DAZ-associated protein 99.8 3.1E-18 1.1E-22 122.9 12.8 85 78-165 7-91 (99)
139 2cq0_A Eukaryotic translation 99.8 1.9E-18 6.6E-23 124.9 11.8 86 77-164 11-96 (103)
140 1x4b_A Heterogeneous nuclear r 99.8 8.2E-19 2.8E-23 129.7 10.0 86 171-258 25-110 (116)
141 2dnm_A SRP46 splicing factor; 99.8 1.5E-18 5.1E-23 125.5 11.0 86 77-164 9-94 (103)
142 2cq4_A RNA binding motif prote 99.8 2.9E-19 1E-23 131.7 7.4 85 171-257 23-107 (114)
143 2fc8_A NCL protein; structure 99.8 2.4E-18 8.3E-23 124.1 12.1 87 168-258 10-96 (102)
144 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-18 3.4E-23 121.8 9.7 81 79-161 5-85 (85)
145 2do4_A Squamous cell carcinoma 99.8 3.8E-18 1.3E-22 122.7 13.0 84 77-163 13-96 (100)
146 2ki2_A SS-DNA binding protein 99.8 1.2E-19 4E-24 128.0 4.8 82 174-257 2-83 (90)
147 3pgw_A U1-A; protein-RNA compl 99.8 1.5E-18 5E-23 148.5 12.5 84 169-256 5-92 (282)
148 3p5t_L Cleavage and polyadenyl 99.8 4.5E-19 1.5E-23 124.9 7.8 80 82-163 2-83 (90)
149 2div_A TRNA selenocysteine ass 99.8 1.7E-18 6E-23 124.2 10.9 84 78-163 6-94 (99)
150 3md1_A Nuclear and cytoplasmic 99.8 1.7E-18 5.9E-23 120.0 10.6 81 81-163 1-81 (83)
151 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.5E-19 1.2E-23 121.7 6.9 76 174-251 1-76 (77)
152 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-18 6.5E-23 122.8 10.8 82 78-161 13-94 (94)
153 3ns6_A Eukaryotic translation 99.8 7E-19 2.4E-23 126.4 8.6 82 78-161 3-91 (100)
154 1x4h_A RNA-binding protein 28; 99.8 4.7E-18 1.6E-22 124.6 13.1 87 77-165 11-103 (111)
155 2kxn_B Transformer-2 protein h 99.8 1.9E-18 6.7E-23 129.9 11.2 86 76-163 41-126 (129)
156 2dgp_A Bruno-like 4, RNA bindi 99.8 4.2E-18 1.4E-22 123.8 12.6 89 77-165 9-98 (106)
157 1p27_B RNA-binding protein 8A; 99.8 2.7E-18 9.4E-23 124.8 11.6 84 78-163 20-103 (106)
158 2adc_A Polypyrimidine tract-bi 99.8 1.5E-18 5E-23 144.0 11.4 128 169-302 30-173 (229)
159 1x5o_A RNA binding motif, sing 99.8 2.4E-18 8.4E-23 126.7 11.3 85 168-254 20-112 (114)
160 1x5s_A Cold-inducible RNA-bind 99.8 3.2E-18 1.1E-22 123.5 11.7 86 78-165 9-94 (102)
161 2hvz_A Splicing factor, argini 99.8 1.1E-18 3.9E-23 125.7 9.2 94 82-182 1-100 (101)
162 2d9p_A Polyadenylate-binding p 99.8 7.3E-18 2.5E-22 121.8 13.5 86 76-165 10-95 (103)
163 1fj7_A Nucleolin RBD1, protein 99.8 1.6E-19 5.4E-24 130.2 4.6 86 170-258 14-99 (101)
164 2cpy_A RNA-binding protein 12; 99.8 9.5E-19 3.3E-23 128.9 8.9 85 169-256 11-96 (114)
165 2x1f_A MRNA 3'-END-processing 99.8 1.9E-18 6.4E-23 123.3 10.0 81 81-163 2-82 (96)
166 1why_A Hypothetical protein ri 99.8 3E-18 1E-22 122.5 11.0 81 170-257 14-96 (97)
167 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-18 7.1E-23 131.9 10.5 83 168-251 58-140 (140)
168 2cpe_A RNA-binding protein EWS 99.8 3.7E-18 1.3E-22 125.6 11.5 88 76-165 10-105 (113)
169 2db1_A Heterogeneous nuclear r 99.8 2.2E-18 7.7E-23 127.6 10.3 83 170-255 14-99 (118)
170 2hgl_A HNRPF protein, heteroge 99.8 1.2E-18 4.2E-23 131.6 9.0 84 169-255 40-126 (136)
171 2fy1_A RNA-binding motif prote 99.8 5.6E-18 1.9E-22 125.1 12.3 84 78-164 4-87 (116)
172 1x5t_A Splicing factor 3B subu 99.8 2.1E-18 7.3E-23 123.0 9.7 85 79-165 3-88 (96)
173 2nlw_A Eukaryotic translation 99.8 1.4E-18 4.8E-23 126.0 8.8 84 169-255 11-101 (105)
174 2fc9_A NCL protein; structure 99.8 2.8E-18 9.4E-23 123.6 10.3 85 168-257 10-94 (101)
175 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-18 4.5E-23 125.3 8.6 84 170-257 12-95 (102)
176 1sjr_A Polypyrimidine tract-bi 99.8 3.5E-18 1.2E-22 131.8 11.4 97 172-273 45-143 (164)
177 2cjk_A Nuclear polyadenylated 99.8 3.3E-19 1.1E-23 140.4 5.9 106 172-302 2-109 (167)
178 2dnq_A RNA-binding protein 4B; 99.8 4.1E-18 1.4E-22 120.0 10.7 80 170-258 5-84 (90)
179 2cpf_A RNA binding motif prote 99.8 3.8E-18 1.3E-22 122.2 10.8 85 79-165 3-90 (98)
180 1fje_B Nucleolin RBD12, protei 99.8 3.5E-19 1.2E-23 141.4 5.8 111 169-302 9-121 (175)
181 2cpj_A Non-POU domain-containi 99.8 2.6E-18 8.8E-23 123.3 9.8 83 168-257 10-92 (99)
182 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.5E-18 8.5E-23 124.1 9.8 85 79-165 10-94 (102)
183 2la4_A Nuclear and cytoplasmic 99.8 2.3E-18 7.8E-23 124.1 9.5 77 171-254 25-101 (101)
184 3zzy_A Polypyrimidine tract-bi 99.8 7.1E-18 2.4E-22 125.3 12.3 93 173-271 28-123 (130)
185 1wg5_A Heterogeneous nuclear r 99.8 3.1E-18 1E-22 124.0 10.2 86 169-257 11-97 (104)
186 2dhg_A TRNA selenocysteine ass 99.8 8.5E-18 2.9E-22 121.7 12.4 85 77-164 5-91 (104)
187 2a3j_A U1 small nuclear ribonu 99.8 2.2E-18 7.4E-23 128.8 9.5 84 170-257 26-113 (127)
188 1wel_A RNA-binding protein 12; 99.8 9.4E-19 3.2E-23 130.9 7.4 84 170-255 22-105 (124)
189 2dng_A Eukaryotic translation 99.8 1.1E-17 3.9E-22 120.8 12.9 84 78-165 12-95 (103)
190 1x4g_A Nucleolysin TIAR; struc 99.8 4E-18 1.4E-22 124.5 10.5 82 170-258 22-103 (109)
191 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1E-18 3.5E-23 125.6 7.1 82 78-163 16-98 (100)
192 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.8E-23 127.8 8.2 88 170-258 22-109 (115)
193 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-17 5.4E-22 120.1 13.2 86 77-166 11-96 (103)
194 2dgu_A Heterogeneous nuclear r 99.8 9.9E-18 3.4E-22 121.1 12.0 81 170-259 8-88 (103)
195 1x4e_A RNA binding motif, sing 99.8 9.8E-19 3.3E-23 121.8 6.5 81 79-161 3-83 (85)
196 1oo0_B CG8781-PA, drosophila Y 99.8 4.1E-18 1.4E-22 124.7 10.1 84 78-163 23-106 (110)
197 1x4c_A Splicing factor, argini 99.8 1.2E-17 4E-22 121.8 12.4 81 170-258 12-97 (108)
198 2cq4_A RNA binding motif prote 99.8 2.1E-18 7E-23 127.1 8.4 82 77-161 21-102 (114)
199 2e5j_A Methenyltetrahydrofolat 99.8 7.8E-18 2.7E-22 120.3 11.2 81 170-256 16-96 (97)
200 2cqp_A RNA-binding protein 12; 99.8 3.8E-18 1.3E-22 122.2 9.5 83 78-162 12-94 (98)
201 3q2s_C Cleavage and polyadenyl 99.8 1.5E-18 5E-23 143.5 8.3 82 172-254 67-150 (229)
202 1qm9_A Polypyrimidine tract-bi 99.8 2.6E-18 8.7E-23 139.2 9.6 123 173-301 3-141 (198)
203 2ywk_A Putative RNA-binding pr 99.8 6E-18 2.1E-22 120.4 10.4 82 77-161 12-93 (95)
204 1x4f_A Matrin 3; structural ge 99.8 1.7E-18 5.7E-23 125.8 7.4 81 170-257 22-105 (112)
205 1p1t_A Cleavage stimulation fa 99.8 3.1E-18 1.1E-22 124.0 8.9 83 79-163 6-88 (104)
206 2ytc_A PRE-mRNA-splicing facto 99.8 5.5E-18 1.9E-22 118.0 9.8 78 168-252 7-85 (85)
207 2rs2_A Musashi-1, RNA-binding 99.7 4E-18 1.4E-22 124.4 9.3 86 75-163 19-104 (109)
208 2jvo_A Nucleolar protein 3; nu 99.7 6.1E-18 2.1E-22 123.2 10.2 81 168-257 26-106 (108)
209 2dgt_A RNA-binding protein 30; 99.7 1.3E-17 4.4E-22 117.9 11.6 80 169-257 6-85 (92)
210 2cqd_A RNA-binding region cont 99.7 1.5E-17 5.1E-22 122.9 12.4 84 77-163 13-96 (116)
211 2m2b_A RNA-binding protein 10; 99.7 5.6E-18 1.9E-22 127.9 10.2 83 78-163 20-108 (131)
212 1sjq_A Polypyrimidine tract-bi 99.7 6.8E-18 2.3E-22 120.9 10.0 81 77-165 12-94 (105)
213 1s79_A Lupus LA protein; RRM, 99.7 6.3E-18 2.1E-22 121.8 9.8 80 78-161 8-87 (103)
214 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.9E-22 120.5 11.8 83 79-165 13-96 (104)
215 2hgn_A Heterogeneous nuclear r 99.7 5.7E-19 1.9E-23 133.9 4.5 125 124-257 2-126 (139)
216 3s7r_A Heterogeneous nuclear r 99.7 7.1E-18 2.4E-22 118.0 9.8 81 77-160 7-87 (87)
217 2cq3_A RNA-binding protein 9; 99.7 3.2E-17 1.1E-21 118.4 13.6 85 77-165 11-95 (103)
218 2krb_A Eukaryotic translation 99.7 1.3E-18 4.4E-23 120.1 5.9 74 173-249 1-81 (81)
219 2yh0_A Splicing factor U2AF 65 99.7 1.4E-18 4.9E-23 140.6 7.0 121 172-302 3-136 (198)
220 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.8E-22 117.7 10.7 80 169-257 5-84 (90)
221 2xnq_A Nuclear polyadenylated 99.7 1.1E-17 3.6E-22 119.5 10.7 78 169-255 18-96 (97)
222 2dgv_A HnRNP M, heterogeneous 99.7 1.9E-17 6.6E-22 117.0 12.0 82 79-164 6-87 (92)
223 3lqv_A PRE-mRNA branch site pr 99.7 4.5E-18 1.6E-22 125.5 9.0 84 170-257 5-88 (115)
224 2dnn_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 123.8 8.6 78 173-254 16-93 (109)
225 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-18 3.8E-23 118.6 5.2 75 175-251 1-75 (75)
226 3sde_A Paraspeckle component 1 99.7 5.9E-18 2E-22 143.1 10.7 109 159-302 8-118 (261)
227 1fjc_A Nucleolin RBD2, protein 99.7 4E-18 1.4E-22 121.6 8.2 84 168-257 11-94 (96)
228 3ucg_A Polyadenylate-binding p 99.7 6.6E-18 2.3E-22 118.7 9.2 80 80-162 5-84 (89)
229 3ulh_A THO complex subunit 4; 99.7 1.1E-17 3.8E-22 121.8 10.6 81 78-161 26-106 (107)
230 1wf1_A RNA-binding protein RAL 99.7 1.2E-17 4.1E-22 122.2 10.9 97 151-257 6-103 (110)
231 2cpd_A Apobec-1 stimulating pr 99.7 2.7E-17 9.1E-22 118.0 12.4 81 168-257 10-92 (99)
232 2dh8_A DAZ-associated protein 99.7 1.5E-17 5.3E-22 120.5 11.3 85 77-164 12-96 (105)
233 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-18 6.2E-23 125.9 6.3 84 169-255 7-93 (107)
234 2do0_A HnRNP M, heterogeneous 99.7 4.6E-17 1.6E-21 119.9 13.8 83 78-163 12-94 (114)
235 2jvr_A Nucleolar protein 3; RN 99.7 5.5E-18 1.9E-22 123.4 8.5 80 171-255 26-106 (111)
236 1nu4_A U1A RNA binding domain; 99.7 3.5E-18 1.2E-22 122.1 7.2 84 170-257 5-92 (97)
237 2mss_A Protein (musashi1); RNA 99.7 4.5E-18 1.5E-22 115.5 7.3 75 83-160 1-75 (75)
238 2cqg_A TDP-43, TAR DNA-binding 99.7 5E-17 1.7E-21 117.4 13.3 85 77-165 11-95 (103)
239 2lcw_A RNA-binding protein FUS 99.6 1.6E-19 5.5E-24 133.6 0.0 87 170-257 4-98 (116)
240 2wbr_A GW182, gawky, LD47780P; 99.7 7.1E-18 2.4E-22 115.3 8.0 73 80-160 6-78 (89)
241 4a8x_A RNA-binding protein wit 99.7 9.4E-18 3.2E-22 117.6 8.9 82 80-163 3-85 (88)
242 2err_A Ataxin-2-binding protei 99.7 8.3E-18 2.9E-22 122.8 8.9 83 77-163 25-107 (109)
243 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.9E-22 124.9 10.4 84 78-163 19-102 (126)
244 1x4a_A Splicing factor, argini 99.7 5.8E-17 2E-21 118.3 13.1 83 77-164 18-100 (109)
245 2cqh_A IGF-II mRNA-binding pro 99.7 1.5E-17 5E-22 117.9 9.6 81 170-258 5-87 (93)
246 2kt5_A RNA and export factor-b 99.7 2.6E-17 8.8E-22 123.1 11.3 84 77-163 31-114 (124)
247 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.7E-22 119.3 8.6 80 170-258 7-87 (96)
248 3egn_A RNA-binding protein 40; 99.7 5.1E-18 1.7E-22 130.2 7.4 88 170-258 42-134 (143)
249 1x5o_A RNA binding motif, sing 99.7 8.6E-17 2.9E-21 118.4 13.6 85 77-162 21-111 (114)
250 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-17 7.4E-22 126.2 10.7 82 77-160 59-140 (140)
251 2e5i_A Heterogeneous nuclear r 99.7 2.7E-17 9.3E-22 121.7 10.8 80 175-261 27-109 (124)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.1E-18 2.1E-22 115.4 6.7 76 82-160 1-76 (77)
253 2ek1_A RNA-binding protein 12; 99.7 6.2E-18 2.1E-22 120.3 7.0 80 80-161 14-93 (95)
254 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5.1E-22 121.3 9.0 81 174-255 3-97 (136)
255 2e44_A Insulin-like growth fac 99.7 2E-17 6.7E-22 118.0 9.4 81 171-256 13-94 (96)
256 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 115.4 10.6 81 78-163 7-87 (91)
257 1x5p_A Negative elongation fac 99.7 5.9E-17 2E-21 115.7 11.8 82 168-258 10-91 (97)
258 2ki2_A SS-DNA binding protein 99.7 4E-18 1.4E-22 120.1 5.4 79 82-163 2-80 (90)
259 1x4b_A Heterogeneous nuclear r 99.7 2.6E-17 8.9E-22 121.6 10.1 85 78-165 24-108 (116)
260 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 124.3 7.8 82 171-255 21-106 (123)
261 1wg5_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 117.4 11.5 81 79-163 13-94 (104)
262 2dgx_A KIAA0430 protein; RRM d 99.7 3.4E-17 1.2E-21 116.7 10.2 80 79-163 7-90 (96)
263 2e5g_A U6 snRNA-specific termi 99.7 4E-17 1.4E-21 115.9 10.6 80 171-257 6-85 (94)
264 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.8E-17 1.6E-21 126.6 11.9 84 78-163 36-119 (156)
265 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.2E-22 126.0 8.8 87 76-164 42-128 (135)
266 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.7E-22 122.5 7.7 78 172-256 9-86 (111)
267 2xs2_A Deleted in azoospermia- 99.7 9.2E-18 3.1E-22 121.1 7.2 83 171-257 7-89 (102)
268 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 119.3 10.4 85 79-165 6-94 (109)
269 2f3j_A RNA and export factor b 99.7 1.9E-17 6.4E-22 131.3 9.4 84 170-255 85-168 (177)
270 1wel_A RNA-binding protein 12; 99.7 1.4E-17 4.9E-22 124.5 8.2 81 78-161 22-102 (124)
271 2nlw_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 120.1 8.4 82 77-162 11-99 (105)
272 1wez_A HnRNP H', FTP-3, hetero 99.7 4.5E-17 1.5E-21 117.2 10.3 81 78-163 12-92 (102)
273 3r27_A HnRNP L, heterogeneous 99.7 2.6E-17 9E-22 116.6 8.9 79 79-163 19-97 (100)
274 1wex_A Hypothetical protein (r 99.7 1E-16 3.5E-21 115.5 12.1 81 79-165 13-93 (104)
275 2db1_A Heterogeneous nuclear r 99.7 2E-17 6.9E-22 122.4 8.5 80 78-161 14-96 (118)
276 2cq1_A PTB-like protein L; RRM 99.7 6.3E-17 2.1E-21 115.9 10.8 81 78-166 12-94 (101)
277 2cpy_A RNA-binding protein 12; 99.7 1.7E-17 5.6E-22 122.2 7.8 81 78-162 12-93 (114)
278 2kn4_A Immunoglobulin G-bindin 99.7 8.2E-17 2.8E-21 125.6 12.1 84 78-163 67-150 (158)
279 1wg1_A KIAA1579 protein, homol 99.7 3.5E-17 1.2E-21 114.7 8.9 77 172-256 4-80 (88)
280 2a3j_A U1 small nuclear ribonu 99.7 7E-17 2.4E-21 120.6 11.0 80 79-163 27-110 (127)
281 1fj7_A Nucleolin RBD1, protein 99.7 8.5E-18 2.9E-22 121.0 5.7 83 77-163 13-95 (101)
282 3q2s_C Cleavage and polyadenyl 99.7 2.5E-17 8.7E-22 136.0 9.3 81 79-161 66-148 (229)
283 2jwn_A Embryonic polyadenylate 99.7 4.5E-17 1.5E-21 121.8 9.7 82 79-163 34-115 (124)
284 2hgl_A HNRPF protein, heteroge 99.7 2.2E-17 7.6E-22 124.7 7.9 80 78-161 41-123 (136)
285 2cq2_A Hypothetical protein LO 99.7 2.1E-17 7.2E-22 120.0 7.2 79 170-255 22-107 (114)
286 2ad9_A Polypyrimidine tract-bi 99.7 6.3E-17 2.1E-21 118.8 9.8 81 78-166 28-110 (119)
287 2diu_A KIAA0430 protein; struc 99.7 6.5E-17 2.2E-21 111.6 9.2 77 171-258 6-88 (96)
288 2krb_A Eukaryotic translation 99.7 2.2E-17 7.5E-22 113.8 6.9 73 81-157 1-80 (81)
289 1x4d_A Matrin 3; structural ge 99.7 5.1E-17 1.7E-21 116.3 9.0 79 79-163 13-92 (102)
290 2g4b_A Splicing factor U2AF 65 99.7 3.3E-17 1.1E-21 129.5 8.7 101 172-302 3-116 (172)
291 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-17 7.1E-22 120.2 6.9 81 77-161 7-90 (107)
292 2cpi_A CCR4-NOT transcription 99.7 4.6E-17 1.6E-21 119.2 8.8 84 79-164 13-102 (111)
293 2pe8_A Splicing factor 45; RRM 99.7 1.5E-16 5E-21 114.9 10.8 83 171-254 6-94 (105)
294 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.6E-21 125.8 10.9 85 78-164 69-153 (165)
295 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5.2E-22 123.6 5.7 82 170-255 39-122 (126)
296 2dnq_A RNA-binding protein 4B; 99.7 3.7E-16 1.3E-20 109.9 12.6 78 78-165 5-82 (90)
297 1iqt_A AUF1, heterogeneous nuc 99.7 2.2E-17 7.6E-22 112.0 6.0 75 83-160 1-75 (75)
298 2jvo_A Nucleolar protein 3; nu 99.7 9.3E-17 3.2E-21 116.9 9.6 77 77-163 27-103 (108)
299 2fc8_A NCL protein; structure 99.7 2.3E-16 7.9E-21 113.7 11.6 82 78-164 12-93 (102)
300 1x4f_A Matrin 3; structural ge 99.7 1.6E-16 5.4E-21 115.3 10.7 82 77-164 21-103 (112)
301 2dnn_A RNA-binding protein 12; 99.7 7.4E-17 2.5E-21 117.2 8.7 78 79-161 14-91 (109)
302 2fc9_A NCL protein; structure 99.7 1.5E-16 5.1E-21 114.4 10.2 83 77-165 11-93 (101)
303 1sjr_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 120.7 12.8 83 78-164 43-125 (164)
304 2cpj_A Non-POU domain-containi 99.7 3.2E-16 1.1E-20 112.3 11.8 79 78-164 12-90 (99)
305 1why_A Hypothetical protein ri 99.7 3.9E-16 1.3E-20 111.4 12.2 79 79-163 15-93 (97)
306 2xnq_A Nuclear polyadenylated 99.7 1.8E-16 6.3E-21 113.0 10.3 75 79-163 20-95 (97)
307 1x4c_A Splicing factor, argini 99.7 4E-16 1.4E-20 113.6 12.3 80 79-165 13-95 (108)
308 2e5j_A Methenyltetrahydrofolat 99.7 3.7E-16 1.3E-20 111.5 11.9 80 77-163 15-94 (97)
309 2cpx_A Hypothetical protein FL 99.7 1.2E-16 4E-21 117.8 8.9 85 79-165 23-107 (115)
310 2la4_A Nuclear and cytoplasmic 99.7 1.4E-16 4.7E-21 114.7 8.9 75 80-162 26-100 (101)
311 1x4g_A Nucleolysin TIAR; struc 99.7 3.3E-16 1.1E-20 114.3 11.1 80 78-165 22-101 (109)
312 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.4E-21 111.9 8.3 78 169-256 7-86 (89)
313 2jvr_A Nucleolar protein 3; RN 99.7 9.6E-17 3.3E-21 116.8 7.7 79 79-163 26-105 (111)
314 3beg_B Splicing factor, argini 99.7 1.3E-16 4.6E-21 117.4 7.9 77 172-256 15-96 (115)
315 1nu4_A U1A RNA binding domain; 99.7 9.3E-17 3.2E-21 114.6 6.8 81 78-163 5-89 (97)
316 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-16 1.2E-20 108.7 9.7 76 78-161 9-85 (85)
317 2f3j_A RNA and export factor b 99.7 3.1E-16 1.1E-20 124.3 10.4 83 78-163 85-167 (177)
318 2xs2_A Deleted in azoospermia- 99.7 8.4E-17 2.9E-21 116.0 6.3 81 78-163 6-86 (102)
319 2bz2_A Negative elongation fac 99.7 3.8E-16 1.3E-20 115.9 10.0 79 170-257 36-114 (121)
320 2voo_A Lupus LA protein; RNA-b 99.7 4E-16 1.4E-20 125.5 10.8 118 132-254 63-187 (193)
321 3u1l_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.5E-21 129.2 10.0 84 169-259 130-234 (240)
322 2cpd_A Apobec-1 stimulating pr 99.7 1.5E-15 5.3E-20 108.7 12.5 78 78-165 12-91 (99)
323 2dgt_A RNA-binding protein 30; 99.7 1.1E-15 3.8E-20 107.9 11.2 77 78-164 7-83 (92)
324 2e5i_A Heterogeneous nuclear r 99.7 4.3E-15 1.5E-19 109.9 14.6 80 79-164 23-103 (124)
325 2dha_A FLJ20171 protein; RRM d 99.7 1.8E-16 6.1E-21 117.6 7.1 79 79-161 21-103 (123)
326 1fjc_A Nucleolin RBD2, protein 99.7 2.5E-16 8.4E-21 112.2 7.5 80 77-163 12-91 (96)
327 2dnl_A Cytoplasmic polyadenyla 99.6 3.3E-16 1.1E-20 115.2 8.3 80 171-254 6-88 (114)
328 2dgu_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 110.0 11.2 77 79-165 9-85 (103)
329 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 113.4 11.1 82 78-164 25-107 (130)
330 2hzc_A Splicing factor U2AF 65 99.6 3.1E-16 1E-20 109.5 7.4 72 171-250 4-86 (87)
331 2hgm_A HNRPF protein, heteroge 99.6 3E-16 1E-20 116.7 7.6 79 78-161 39-119 (126)
332 2e44_A Insulin-like growth fac 99.6 1.2E-15 4.2E-20 108.6 10.6 79 79-163 13-92 (96)
333 1whx_A Hypothetical protein ri 99.6 3.6E-16 1.2E-20 114.4 7.9 77 79-163 8-84 (111)
334 2lcw_A RNA-binding protein FUS 99.5 1.2E-17 4.2E-22 123.4 0.0 86 78-165 4-97 (116)
335 2hgn_A Heterogeneous nuclear r 99.6 1.3E-16 4.4E-21 120.9 5.6 82 77-163 42-123 (139)
336 2dnp_A RNA-binding protein 14; 99.6 1.2E-15 4.2E-20 107.2 10.3 76 78-163 6-81 (90)
337 2cqh_A IGF-II mRNA-binding pro 99.6 6.3E-16 2.2E-20 109.4 8.8 77 79-164 6-84 (93)
338 1wf1_A RNA-binding protein RAL 99.6 3E-15 1E-19 109.4 12.6 76 79-164 25-101 (110)
339 2kvi_A Nuclear polyadenylated 99.6 8.2E-16 2.8E-20 109.5 9.3 77 78-164 7-84 (96)
340 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-16 7.3E-21 110.6 5.9 79 171-257 3-81 (88)
341 2j8a_A Histone-lysine N-methyl 99.6 4.2E-16 1.4E-20 113.7 7.1 78 82-161 3-94 (136)
342 2i2y_A Fusion protein consists 99.6 1.8E-15 6E-20 116.9 11.2 80 77-163 69-148 (150)
343 1x5p_A Negative elongation fac 99.6 3.9E-15 1.3E-19 106.1 12.0 78 78-165 12-89 (97)
344 2e5g_A U6 snRNA-specific termi 99.6 2.3E-15 7.9E-20 106.7 10.7 77 79-163 6-82 (94)
345 1wg1_A KIAA1579 protein, homol 99.6 2E-15 6.7E-20 105.7 8.9 76 79-163 3-78 (88)
346 3v4m_A Splicing factor U2AF 65 99.6 1.7E-15 5.9E-20 109.3 8.7 83 171-254 3-97 (105)
347 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 107.3 7.2 76 79-163 9-84 (89)
348 2dit_A HIV TAT specific factor 99.6 8.2E-15 2.8E-19 107.3 12.2 84 169-257 11-105 (112)
349 2diu_A KIAA0430 protein; struc 99.6 7.6E-15 2.6E-19 101.2 11.2 72 82-165 10-86 (96)
350 3egn_A RNA-binding protein 40; 99.6 3.3E-16 1.1E-20 120.0 4.9 83 79-163 43-130 (143)
351 2cq2_A Hypothetical protein LO 99.6 3.1E-15 1.1E-19 108.6 9.2 78 79-162 23-105 (114)
352 3pgw_S U1-70K; protein-RNA com 99.6 3.3E-15 1.1E-19 134.6 10.7 83 78-162 99-181 (437)
353 2dnl_A Cytoplasmic polyadenyla 99.6 2.1E-15 7.2E-20 110.9 7.7 64 79-143 6-72 (114)
354 3ue2_A Poly(U)-binding-splicin 99.6 5.3E-15 1.8E-19 108.7 9.5 82 172-254 19-109 (118)
355 3beg_B Splicing factor, argini 99.6 3.1E-15 1.1E-19 110.1 8.0 74 79-161 14-92 (115)
356 1jmt_A Splicing factor U2AF 35 99.6 1.5E-15 5.3E-20 109.4 5.6 72 178-251 20-103 (104)
357 2hzc_A Splicing factor U2AF 65 99.6 5.2E-15 1.8E-19 103.2 8.1 73 78-159 3-86 (87)
358 2pe8_A Splicing factor 45; RRM 99.6 1.7E-14 5.8E-19 104.0 10.4 82 79-162 6-93 (105)
359 2bz2_A Negative elongation fac 99.6 1.1E-14 3.9E-19 107.9 9.7 76 78-163 36-111 (121)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 1.1E-14 3.7E-19 101.8 7.3 78 79-165 3-80 (88)
361 2voo_A Lupus LA protein; RNA-b 99.5 3.2E-14 1.1E-18 114.3 9.5 79 80-162 108-186 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.5 1.3E-13 4.5E-18 113.3 9.3 80 78-163 131-229 (240)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.4E-13 1.5E-17 95.4 10.7 67 183-257 27-93 (100)
364 2dit_A HIV TAT specific factor 99.5 9.8E-13 3.3E-17 96.1 12.0 80 78-163 12-102 (112)
365 3s6e_A RNA-binding protein 39; 99.5 2.8E-13 9.4E-18 98.8 8.9 79 171-254 5-93 (114)
366 3tht_A Alkylated DNA repair pr 99.4 3.5E-13 1.2E-17 116.7 8.9 78 168-252 13-97 (345)
367 1jmt_A Splicing factor U2AF 35 99.4 9.3E-14 3.2E-18 100.0 4.5 72 86-160 20-103 (104)
368 3v4m_A Splicing factor U2AF 65 99.4 6.3E-13 2.2E-17 95.7 8.1 80 80-161 4-95 (105)
369 3ue2_A Poly(U)-binding-splicin 99.4 9.5E-13 3.2E-17 96.7 8.2 80 80-161 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.3 2.5E-12 8.6E-17 111.3 8.4 78 78-161 15-97 (345)
371 2dnr_A Synaptojanin-1; RRM dom 99.3 6.8E-12 2.3E-16 85.7 8.0 75 170-254 4-86 (91)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.3E-11 1.8E-15 84.5 12.5 65 91-164 27-91 (100)
373 3s6e_A RNA-binding protein 39; 99.2 5.4E-11 1.8E-15 86.6 8.2 76 80-161 6-91 (114)
374 1owx_A Lupus LA protein, SS-B, 99.2 4.5E-11 1.5E-15 87.2 7.5 79 169-254 14-96 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 4.6E-11 1.6E-15 82.0 6.2 75 169-253 11-94 (95)
376 3dxb_A Thioredoxin N-terminall 99.1 2.4E-10 8.2E-15 93.8 8.7 69 185-254 141-213 (222)
377 1owx_A Lupus LA protein, SS-B, 99.1 6.3E-10 2.2E-14 81.1 8.9 74 79-158 16-91 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 5.9E-09 2E-13 71.2 6.7 70 82-162 8-85 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2.2E-08 7.6E-13 70.0 9.3 75 171-252 19-98 (117)
380 3dxb_A Thioredoxin N-terminall 98.8 1.3E-08 4.3E-13 83.5 8.7 67 93-161 141-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.7 2.3E-08 7.9E-13 68.6 5.3 69 82-161 16-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.6E-06 5.6E-11 60.6 8.1 72 79-158 19-95 (117)
383 1wey_A Calcipressin 1; structu 98.3 1.5E-06 5.3E-11 60.6 7.0 74 173-253 5-83 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.8 0.0002 6.8E-09 49.7 9.2 77 171-256 6-86 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00026 8.9E-09 49.1 9.6 89 79-186 6-99 (104)
386 1whv_A Poly(A)-specific ribonu 97.8 0.00018 6.2E-09 49.3 8.4 56 172-237 15-70 (100)
387 1wey_A Calcipressin 1; structu 97.7 9.2E-05 3.1E-09 51.6 6.7 75 80-162 4-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00014 4.8E-09 49.8 7.3 68 174-242 2-71 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.5 0.00042 1.4E-08 49.7 7.5 75 171-254 22-97 (119)
390 1uw4_A UPF3X; nonsense mediate 97.5 0.0005 1.7E-08 47.1 7.5 68 82-149 2-71 (91)
391 1whv_A Poly(A)-specific ribonu 97.3 0.0012 4E-08 45.3 7.7 56 80-144 15-70 (100)
392 3ctr_A Poly(A)-specific ribonu 97.1 0.00055 1.9E-08 47.0 4.2 54 174-237 7-60 (101)
393 2l08_A Regulator of nonsense t 96.8 0.00089 3.1E-08 46.1 3.2 69 172-241 8-78 (97)
394 3p3d_A Nucleoporin 53; structu 96.8 0.0019 6.5E-08 47.0 5.0 78 174-254 8-99 (132)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.012 4E-07 42.2 8.4 72 79-159 22-93 (119)
396 3ctr_A Poly(A)-specific ribonu 96.6 0.0041 1.4E-07 42.7 5.6 53 83-144 8-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 96.1 0.0034 1.2E-07 56.2 3.7 56 173-235 53-108 (464)
398 2l08_A Regulator of nonsense t 96.0 0.005 1.7E-07 42.4 3.2 70 80-149 8-79 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.9 0.0035 1.2E-07 56.1 2.9 55 80-140 52-106 (464)
400 3p3d_A Nucleoporin 53; structu 93.3 0.074 2.5E-06 38.6 3.6 67 81-149 7-87 (132)
401 3d45_A Poly(A)-specific ribonu 89.7 0.95 3.3E-05 41.2 7.8 55 173-237 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 87.7 1.8 6.2E-05 39.3 8.2 57 80-145 439-495 (507)
403 4eyt_A Telomerase associated p 82.1 8.8 0.0003 25.5 7.4 70 172-250 11-87 (129)
404 2cu1_A Mitogen-activated prote 73.0 7.5 0.00026 26.4 5.0 69 180-257 23-91 (103)
405 1xn9_A 30S ribosomal protein S 65.6 21 0.0007 24.5 6.1 49 183-232 28-80 (101)
406 2jrh_A Mitogen-activated prote 64.2 28 0.00097 23.0 6.5 69 180-257 19-87 (94)
407 1ywx_A 30S ribosomal protein S 62.9 19 0.00064 24.8 5.5 48 183-231 28-79 (102)
408 2v94_A RPS24, 30S ribosomal pr 62.7 13 0.00046 25.7 4.8 49 183-232 37-89 (107)
409 3u5c_Y RP50, 40S ribosomal pro 58.5 33 0.0011 24.8 6.3 49 183-232 33-85 (135)
410 3j21_T 50S ribosomal protein L 57.4 26 0.0009 23.2 5.3 56 177-235 26-82 (86)
411 2c60_A Human mitogen-activated 57.1 40 0.0014 22.9 6.1 63 180-251 46-108 (111)
412 2npt_B Mitogen-activated prote 55.6 44 0.0015 22.4 6.9 63 180-251 35-97 (100)
413 2xzm_P RPS24E; ribosome, trans 52.7 24 0.00082 26.0 4.9 49 183-232 31-83 (149)
414 3fry_A Probable copper-exporti 51.1 40 0.0014 20.6 6.2 54 174-235 7-60 (73)
415 2g1d_A 30S ribosomal protein S 49.6 12 0.00041 25.5 2.7 48 183-231 29-80 (98)
416 1wa7_B TIP, hypothetical 28.7 46.6 25 0.00085 17.0 3.0 7 7-13 3-9 (26)
417 2g0c_A ATP-dependent RNA helic 45.5 12 0.00041 23.8 2.1 59 184-252 12-75 (76)
418 4e8u_A Putative uncharacterize 43.1 60 0.0021 24.6 5.9 38 185-226 33-72 (172)
419 3u5e_X 60S ribosomal protein L 39.5 50 0.0017 24.1 4.8 57 176-235 81-138 (142)
420 4a17_R RPL23A, 60S ribosomal p 37.6 53 0.0018 24.2 4.7 57 176-235 89-146 (150)
421 2i9x_A Putative septation prot 36.2 47 0.0016 22.0 3.9 48 200-254 5-54 (87)
422 1vq8_S 50S ribosomal protein L 33.7 56 0.0019 21.5 4.0 54 177-233 25-79 (85)
423 3iz5_X 60S ribosomal protein L 33.6 47 0.0016 24.6 3.9 55 177-234 92-147 (152)
424 2ia9_A Putative septation prot 31.8 59 0.002 22.2 3.9 48 200-254 5-54 (100)
425 2lfv_A Protein DAMX; cell divi 36.8 11 0.00036 26.2 0.0 52 186-240 35-88 (106)
426 2i9z_A Putative septation prot 30.5 65 0.0022 22.2 3.9 48 200-254 5-54 (105)
427 2zkr_s 60S ribosomal protein L 30.4 85 0.0029 23.3 4.8 56 177-235 96-152 (156)
428 4eyt_A Telomerase associated p 27.7 1.3E+02 0.0046 19.8 8.0 59 79-145 10-68 (129)
429 4a4j_A Pacszia, cation-transpo 27.0 95 0.0032 18.3 4.2 55 174-235 4-61 (69)
430 1vd2_A Protein kinase C, IOTA 26.0 1.5E+02 0.005 19.7 6.4 56 176-236 17-74 (89)
431 3dxs_X Copper-transporting ATP 25.9 1.1E+02 0.0038 18.3 6.5 55 174-235 4-62 (74)
432 4hpq_A ATG31, KLTH0C07942P; au 25.4 38 0.0013 21.0 1.8 14 280-293 3-16 (69)
433 1pqs_A Cell division control p 23.3 1.4E+02 0.0046 19.2 4.3 52 180-236 7-64 (77)
434 2jya_A AGR_C_3324P, uncharacte 23.1 1.3E+02 0.0044 20.7 4.4 27 213-240 48-74 (106)
435 3iz6_U 40S ribosomal protein S 23.0 32 0.0011 25.0 1.3 48 183-231 38-90 (138)
436 3lpe_A Putative transcription 22.7 63 0.0021 21.5 2.8 22 122-143 49-70 (92)
437 3mfb_A Uncharacterized protein 21.8 1.3E+02 0.0046 22.3 4.6 36 185-221 3-41 (157)
438 3h7h_B Transcription elongatio 20.3 70 0.0024 22.0 2.7 26 215-240 50-75 (106)
439 3fut_A Dimethyladenosine trans 20.0 79 0.0027 25.8 3.4 32 82-114 111-142 (271)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.1e-38 Score=257.56 Aligned_cols=171 Identities=28% Similarity=0.496 Sum_probs=155.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||||||.++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..+ .++.+++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 788999998
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
+..... ......++|||+||+.++++++|+++|+ .||.|++++|+++. +.++|||||+|.+.++|.+|++.|||.
T Consensus 92 ~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 92 SQRDPS--LRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CCCCTH--HHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccc--ccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 864322 1223457899999999999999999998 99999999999995 557999999999999999999999999
Q ss_pred eeCCeeeEEeecccCCCC
Q 022077 240 FCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~~~~ 257 (303)
.|+|+.|+|.|++++..+
T Consensus 167 ~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EETTEECEEEECCCHHHH
T ss_pred EECCEEEEEEEcCCCccc
Confidence 999999999999886543
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.2e-36 Score=245.76 Aligned_cols=179 Identities=19% Similarity=0.384 Sum_probs=152.8
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
++...++|||+|||.++|+++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++. ++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 456789999999999999999999999999999999999998999999999999999999999975 88888 788999
Q ss_pred eeecCCCCCCC--CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 157 LNWASFGAGEK--RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 157 v~~~~~~~~~~--~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
+.++....... ......++|||+||+.++++++|+++|+ .||.|++++|+.+..+|.++|||||+|++.++|.+|+.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 99886543322 2234568999999999999999999998 99999999999998899999999999999999999998
Q ss_pred HhCCceeCCeeeEEeecccCCCCCCc
Q 022077 235 EMNGVFCSTRPMRIGPATNKKTVSGQ 260 (303)
Q Consensus 235 ~l~g~~~~g~~l~v~~~~~~~~~~~~ 260 (303)
. +|..++|+.|+|.|+.++......
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp C-SCCEETTEECEEEECC--------
T ss_pred h-CCcEECCEEEEEEecCChhHhccc
Confidence 6 899999999999999998766543
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=238.07 Aligned_cols=166 Identities=31% Similarity=0.570 Sum_probs=154.0
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
++|||+|||.++|+++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|+|..+ .++.+++.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 589999999999999999999999999999999987 478999999999999999999999999999 78999999986
Q ss_pred CCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 162 FGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
.... ......++|||+||+.++++++|+++|+ .||.|.++.+..+..+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 78 ~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 78 QSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCC--CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 5433 3455678999999999999999999998 999999999999988999999999999999999999999999999
Q ss_pred CCeeeEEeeccc
Q 022077 242 STRPMRIGPATN 253 (303)
Q Consensus 242 ~g~~l~v~~~~~ 253 (303)
+|+.|+|.|++.
T Consensus 155 ~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 NGRPLRINWAAK 166 (166)
T ss_dssp TTEECEEEESCC
T ss_pred CCcEEEEEecCC
Confidence 999999999863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.5e-36 Score=238.50 Aligned_cols=165 Identities=26% Similarity=0.505 Sum_probs=154.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 458999999999999999999999999999999999998999999999999999999999999999999 789999999
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
+.... .....++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|+|||+|.+.++|.+|+..|||.
T Consensus 80 ~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 80 ARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CCCCS----STTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCc----ccCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 87542 345678999999999999999999998 9999999999999888999999999999999999999999999
Q ss_pred eeCC--eeeEEeec
Q 022077 240 FCST--RPMRIGPA 251 (303)
Q Consensus 240 ~~~g--~~l~v~~~ 251 (303)
.+.| +.|+|.||
T Consensus 155 ~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 155 IPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred EecCCCeEEEEEeC
Confidence 9977 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.1e-36 Score=236.74 Aligned_cols=164 Identities=27% Similarity=0.490 Sum_probs=153.1
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
+++|||+|||.++|+++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 58999999999999999999999999999999999998999999999999999999999999999999 7899999998
Q ss_pred CCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 161 SFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++.|||..
T Consensus 80 ~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 80 RPS----SASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCC----CGGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCC----cccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 754 2334568899999999999999999998 99999999999998889999999999999999999999999999
Q ss_pred eCCee--eEEeec
Q 022077 241 CSTRP--MRIGPA 251 (303)
Q Consensus 241 ~~g~~--l~v~~~ 251 (303)
+.|+. |+|.||
T Consensus 155 ~~g~~~~i~v~~A 167 (167)
T 1fxl_A 155 PSGATEPITVKFA 167 (167)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCccceEEEeC
Confidence 99975 888886
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.6e-36 Score=247.04 Aligned_cols=176 Identities=21% Similarity=0.394 Sum_probs=157.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++|+++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 78889998
Q ss_pred ecCCCCCCC-------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHH
Q 022077 159 WASFGAGEK-------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 159 ~~~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 231 (303)
++....... ......++|||+||+.++++++|+++|+ .||.|++++|+.+..+|+++|||||+|++.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 876442211 1235568999999999999999999998 99999999999998899999999999999999999
Q ss_pred HHHHhCCceeCCeeeEEeecccCCCC
Q 022077 232 AMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 232 A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
|+..|||..|+|+.|+|.|+..+...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999987544
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.6e-35 Score=231.95 Aligned_cols=168 Identities=18% Similarity=0.339 Sum_probs=151.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCC--CcccEEEEEEccHHHHHHHHHHhCCCCCC-CCCceeE
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTG--QIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQNFR 156 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~-~~~~~i~ 156 (303)
+.++|||+|||.++|+++|+++|++||.|.++++++++.++ +++|||||+|.+.++|.+|++.|+|..+. +.++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 89999999999999999999999998764 4478888
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
+.++..... .....++|||+||+.++++++|+++|+ .||.|.++++..+. +|.++|||||+|++.++|.+|+..|
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh
Confidence 888764422 234578999999999999999999998 99999999999996 6899999999999999999999999
Q ss_pred CCceeC---CeeeEEeecc
Q 022077 237 NGVFCS---TRPMRIGPAT 252 (303)
Q Consensus 237 ~g~~~~---g~~l~v~~~~ 252 (303)
||..+. ++.|+|.|+.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 998875 4999999974
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.2e-36 Score=237.85 Aligned_cols=165 Identities=24% Similarity=0.429 Sum_probs=149.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
++++|||+|||.++|+++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++. +..+ .|+.+++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 568999999999999999999999999999999999998999999999999999999999974 5556 677788887
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
+... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|.+.++|.+|++ ++|.
T Consensus 78 ~~~~----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 151 (167)
T 2cjk_A 78 AIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI 151 (167)
T ss_dssp CCCH----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE
T ss_pred ccch----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE
Confidence 6532 1223467899999999999999999998 99999999999998889999999999999999999998 8999
Q ss_pred eeCCeeeEEeecccC
Q 022077 240 FCSTRPMRIGPATNK 254 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~ 254 (303)
.++|+.|+|.|+.++
T Consensus 152 ~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 152 DFKDRKIEIKRAEPR 166 (167)
T ss_dssp CSSSSCEEEEECCCC
T ss_pred EeCCeEEEEeecCCC
Confidence 999999999999876
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.6e-34 Score=248.25 Aligned_cols=184 Identities=16% Similarity=0.263 Sum_probs=164.1
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.|+|..+ .++.+++.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~ 91 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQL 91 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEe
Confidence 568999999999999999999999999 888887 35678999999999999999999999998 789999998
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
+. ..++|||+||+.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|+..|||.
T Consensus 92 ~~----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 92 QP----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp CC----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cC----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 64 347999999999999999999998 9999999999999889999999999999999999999999999
Q ss_pred eeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-cc-C-cccccccc
Q 022077 240 FCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NI-K-NPVFQTFV 302 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~f~ 302 (303)
.++|+.|+|.|+..+.... .....++|||+++. ++ | ++|.++|.
T Consensus 161 ~~~g~~i~v~~a~~~~~~~-------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~ 207 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLTP-------------------ALLHSRCLCVDRLPPGFNDVDALCRALS 207 (284)
T ss_dssp EETTEECEEEECCGGGCCT-------------------TTTSCSEEEEECCCTTCCCHHHHHHHTC
T ss_pred EeCCcEEEEEECCCCCCCc-------------------ccCCccEEEEecCCcccCCHHHHHHHhh
Confidence 9999999999998764332 12346799999777 64 7 88888873
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.6e-34 Score=246.40 Aligned_cols=194 Identities=11% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+|||.++|+++|+++|+.||.|.+|.+.++..+ ++|||||+|.+.++|.+|++ ++|..+ .++.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcEE
Confidence 34567899999999999999999999999999999999998743 57999999999999999994 899999 78899
Q ss_pred EeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCC-CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 156 RLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 156 ~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
++.++. .++|||+||+.++++++|+++|+ .|| .|.+++++.+.. |.++|||||+|.+.++|.+|+.
T Consensus 111 ~v~~~~-----------~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 111 IVSHLT-----------ECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEECC-----------SCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEECC-----------CCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 999863 67999999999999999999998 999 999999998874 7889999999999999999999
Q ss_pred HhCCceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-c-cC-cccccccc
Q 022077 235 EMNGVFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-N-IK-NPVFQTFV 302 (303)
Q Consensus 235 ~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~f~ 302 (303)
.|||..++|+.|+|.|+.++...... .......++|||+|+. + +| ++|.++|.
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~ 233 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT---------------DSATLEGREIMIRNLSTELLDENLLRESFE 233 (292)
T ss_dssp HHTTCEETTEECEEEECCCC------------------------CCTTTEEEEEEECTTTCCHHHHHHHHG
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc---------------cccCCCCceEEEECCCcccCCHHHHHHHHh
Confidence 99999999999999999876544321 1233456899999776 7 78 88888773
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.8e-34 Score=234.75 Aligned_cols=167 Identities=22% Similarity=0.383 Sum_probs=146.4
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhc----C-------CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
..++|||+|||.++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 56899999999999999999999999 4 4455444 445789999999999999999 8999999
Q ss_pred CCCCceeEeeecCCCCCCC----------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCC
Q 022077 149 PNGEQNFRLNWASFGAGEK----------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT 212 (303)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~----------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~ 212 (303)
.++.++|.|+....... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+
T Consensus 76 --~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 --QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSAT 152 (198)
T ss_dssp --TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTTT
T ss_pred --cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCCC
Confidence 78999999886432111 1125678999999999999999999998 9999999999999889
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCC
Q 022077 213 GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKT 256 (303)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 256 (303)
|.++|||||+|.+.++|.+|+..|||..++|+.|+|.|++++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999988754
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3.1e-33 Score=222.35 Aligned_cols=159 Identities=23% Similarity=0.417 Sum_probs=143.7
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhc----C-------CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
+.++|||+|||.++|+++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 566665543 4689999999999999999 8999999
Q ss_pred CCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHH
Q 022077 149 PNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESE 228 (303)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 228 (303)
.++.+++.++... ......++|||+||+.++++++|+++|+ .||.|.++++..+..+|.++|||||+|++.++
T Consensus 76 --~g~~i~v~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 76 --QGQSLKIRRPHDY----QPLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp --TTEECEEECCSSC----CCCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred --cCceeeecCCccc----CCCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 7889999987643 2234578999999999999999999998 99999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeeeEEeecc
Q 022077 229 QLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 229 A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
|.+|+..|||..++|+.|+|.|+.
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999974
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.9e-33 Score=238.51 Aligned_cols=173 Identities=16% Similarity=0.278 Sum_probs=159.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.+++.|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 457999999999999999999999999999999999998999999999999999999999999999999 789999999
Q ss_pred cCCCCCCCCCCCCCceEEEcCCCccc-CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 160 ASFGAGEKRDDTPDHTIFVGDLAADV-TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
+...... ......++|||+||+.++ ++++|+++|+ .||.|.+++|..+. +|.++|+|||+|.+.++|.+|+..|||
T Consensus 172 a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8765432 344567899999999995 9999999998 99999999999987 789999999999999999999999999
Q ss_pred ceeCCeeeEEeecccCCCC
Q 022077 239 VFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 239 ~~~~g~~l~v~~~~~~~~~ 257 (303)
..++|+.|+|.|+.++..+
T Consensus 249 ~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 249 LSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CEETTEECEEEECCSSSCH
T ss_pred CccCCeEEEEEEecCCCcc
Confidence 9999999999999988764
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1e-32 Score=236.79 Aligned_cols=165 Identities=22% Similarity=0.444 Sum_probs=145.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHH----HHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
+....++|||+||+.++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 34567999999999999999977 8999999999998876 678999999999999999999999999999 77
Q ss_pred ceeEeeecCCCCCC------------------------------------------------------------------
Q 022077 153 QNFRLNWASFGAGE------------------------------------------------------------------ 166 (303)
Q Consensus 153 ~~i~v~~~~~~~~~------------------------------------------------------------------ 166 (303)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99999988654310
Q ss_pred -----------------------------------------CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEE
Q 022077 167 -----------------------------------------KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK 205 (303)
Q Consensus 167 -----------------------------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~ 205 (303)
......+++|||+||+.++++++|+++|+ .||.|++++
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 01123567899999999999999999998 999999999
Q ss_pred EEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEeecc
Q 022077 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPAT 252 (303)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 252 (303)
|+.++ +|||||+|.+.++|.+|+..|||..++ |+.|+|.|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98664 689999999999999999999999999 9999999986
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.1e-33 Score=226.80 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=139.5
Q ss_pred CcceEEEcCCC-ccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 80 EIRTLWIGDLQ-YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 80 ~~~~l~v~nLp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
.+++|||+||+ +.+|+++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++.|||..+ .++.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 46899999999 899999999999999999999998753 58999999999999999999999999 77899999
Q ss_pred ecCCCCCCC---------------------------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCc--ce
Q 022077 159 WASFGAGEK---------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYPST--KG 203 (303)
Q Consensus 159 ~~~~~~~~~---------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i--~~ 203 (303)
|+....... ....++++|||+||+.++++++|+++|+ .||.| ++
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 886432100 0013457899999999999999999998 99999 88
Q ss_pred EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe----eeEEeec
Q 022077 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR----PMRIGPA 251 (303)
Q Consensus 204 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~~ 251 (303)
++++.+. +..+|+|||+|++.++|.+|+..|||..|.|+ .+.|+|+
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9988774 55679999999999999999999999999887 4666654
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.3e-34 Score=228.10 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=145.6
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|..||.+.. .++++..+|+++|||||+|.+.++|.+|+ .|+|..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4467799999999999999999999999998766 33444457889999999999999999999 5999999 789999
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
|.|+..... ......++|||+||+.++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|+..|
T Consensus 85 v~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 85 LEKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp EECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 999875432 3345678999999999999999999998 89987655 457889999999999999999999999
Q ss_pred CCceeCCeeeEEeecccC
Q 022077 237 NGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 237 ~g~~~~g~~l~v~~~~~~ 254 (303)
||..++|+.|+|.|+.++
T Consensus 157 ~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TEEEETTEEEEEEECSSC
T ss_pred CCCEECCeEEEEEecCCC
Confidence 999999999999999876
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.6e-32 Score=227.11 Aligned_cols=163 Identities=16% Similarity=0.260 Sum_probs=143.7
Q ss_pred CCcceEEEcCCCc-cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 4568999999999 99999999999999999999999875 57999999999999999999999999 7789999
Q ss_pred eecCCCCCCC-------------------------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCC-CcceEE
Q 022077 158 NWASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAK 205 (303)
Q Consensus 158 ~~~~~~~~~~-------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G-~i~~~~ 205 (303)
.|+....... ....++++|||+||+.++++++|+++|+ .|| .|.+++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEEE
Confidence 8886431100 0123468999999999999999999998 999 999999
Q ss_pred EEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEeecccC
Q 022077 206 VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (303)
Q Consensus 206 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 254 (303)
++.+ .+|||||+|++.++|.+|+..|||..++ |+.|+|.|++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 8654 2789999999999999999999999999 999999999864
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.9e-32 Score=235.14 Aligned_cols=170 Identities=14% Similarity=0.270 Sum_probs=146.5
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcC-CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..++|||+|||.++++++|+++|+.|| .|.++.+.+++. |.++|||||+|.+.++|.+|++.|+|..+ .++.++|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 568999999999999999999999999 999999998874 88999999999999999999999999999 77999999
Q ss_pred ecCCCCCCC---CCCCCCceEEEcCCCcc-cCHHHHHHHHhhhCCCcceEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH
Q 022077 159 WASFGAGEK---RDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRL-TGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 159 ~~~~~~~~~---~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~A~~A~ 233 (303)
|+....... ......++|||+||+.+ +++++|+++|+ .||.|.+++|+.+.. +|.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 987543332 23456789999999999 99999999998 999999999999875 5899999999999999999999
Q ss_pred HHhCCceeCCeeeEEeecccC
Q 022077 234 TEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 234 ~~l~g~~~~g~~l~v~~~~~~ 254 (303)
.|||..|+|+.|+|.|+.+|
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4.1e-32 Score=220.98 Aligned_cols=162 Identities=16% Similarity=0.260 Sum_probs=142.8
Q ss_pred CcceEEEcCCCc-cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 80 EIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 80 ~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
.+++|||+|||. ++++++|+++|+.||.|.++++.+++ +|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 358999999999 99999999999999999999998875 57999999999999999999999999 77889998
Q ss_pred ecCCCCCCC-------------------------------CCCCCCceEEEcCCCcccCHHHHHHHHhhhCC-CcceEEE
Q 022077 159 WASFGAGEK-------------------------------RDDTPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKV 206 (303)
Q Consensus 159 ~~~~~~~~~-------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G-~i~~~~i 206 (303)
|+....... ....++++|||+||+.++++++|+++|+ .|| .|.++++
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 886431110 0123478899999999999999999998 999 9999998
Q ss_pred EeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-CeeeEEeecccC
Q 022077 207 VIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS-TRPMRIGPATNK 254 (303)
Q Consensus 207 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 254 (303)
+.+. +|+|||+|.+.++|.+|+..|||..++ |+.|+|.|++++
T Consensus 154 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7642 789999999999999999999999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=5.6e-31 Score=223.28 Aligned_cols=161 Identities=27% Similarity=0.453 Sum_probs=145.8
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+..|+|..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 3456789999999999999999999999999999998654 57999999999999999999999999 789999
Q ss_pred eeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 157 LNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
|.|+.. .++|||+||+..+++++|+++|+ .||.|.+|.|+.+ .+|+++|||||+|.+.++|.+|+..|
T Consensus 90 v~~a~~----------~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 90 IRFATH----------GAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp EEECCC----------SSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eeeccc----------CCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 999863 57899999999999999999998 9999999999999 48999999999999999999999999
Q ss_pred C-CceeC---CeeeEEeecccCCCC
Q 022077 237 N-GVFCS---TRPMRIGPATNKKTV 257 (303)
Q Consensus 237 ~-g~~~~---g~~l~v~~~~~~~~~ 257 (303)
| |..+. ++.|.|.++......
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 44554 999999999876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=2.5e-25 Score=174.27 Aligned_cols=146 Identities=23% Similarity=0.331 Sum_probs=116.8
Q ss_pred EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC-----ceeEeeecC--CCCCCCCCCCCCceEEEcCCC
Q 022077 110 AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE-----QNFRLNWAS--FGAGEKRDDTPDHTIFVGDLA 182 (303)
Q Consensus 110 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~-----~~i~v~~~~--~~~~~~~~~~~~~~l~v~nl~ 182 (303)
.+.++++.. +++|||||+|.+.++|++|++.+++.....+. ......... ............++|||+||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777764 68999999999999999999887764332111 111111111 111122334557899999999
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCC
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 258 (303)
.++++++|+++|+ .||.|.+++|+.+..+|+++|||||+|.+.++|.+|+..|||..++|+.|+|.|++.++...
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999998 99999999999998899999999999999999999999999999999999999999876553
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=9.2e-24 Score=163.80 Aligned_cols=127 Identities=20% Similarity=0.329 Sum_probs=112.1
Q ss_pred CCcccEEEEEEccHHHHHHHHHHh-CCCCCCCCCceeEeeecCCCC------------CCCCCCCCCceEEEcCCCcccC
Q 022077 120 GQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNFRLNWASFGA------------GEKRDDTPDHTIFVGDLAADVT 186 (303)
Q Consensus 120 ~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~i~v~~~~~~~------------~~~~~~~~~~~l~v~nl~~~~~ 186 (303)
...+|+++|+|.+.++|++|++.+ ||..+ .| .+++.++.... .........++|||+||+.+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~--~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGV--DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTC--CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCC--CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 99999 45 88888876421 2223456678999999999999
Q ss_pred HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCC
Q 022077 187 DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKK 255 (303)
Q Consensus 187 ~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 255 (303)
+++|+++|+ .||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|.|+++++
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999998 9999999999876 48999999999999999999999999999999999998875
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=8e-23 Score=151.07 Aligned_cols=106 Identities=25% Similarity=0.401 Sum_probs=76.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
..+|||+||+.++++++|+++|+ .||.|++|+|+++. +.++|||||+|++.++|.+|+..|||..|+|+.|+|.|+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56899999999999999999998 99999999999995 5579999999999999999999999999999999999998
Q ss_pred cCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccCc
Q 022077 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIKN 295 (303)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 295 (303)
.+..+.... .......++|||+|+. ++|+
T Consensus 82 ~~~~~~~~~--------------~~~~~~~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 82 SRKEREAEL--------------GARAKEFTNVYIKNFGPGSTR 111 (115)
T ss_dssp CCCC----------------------------------------
T ss_pred Ccccccccc--------------ccccCCCCceEeCCCCCCccc
Confidence 765443211 1122345689999766 6764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=145.16 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..+++|||+|||.++++++|+++|+ .||.|.+++|++|+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 022077 251 ATN 253 (303)
Q Consensus 251 ~~~ 253 (303)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.9e-22 Score=147.38 Aligned_cols=106 Identities=18% Similarity=0.366 Sum_probs=74.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
...+|||+|||.++|+++|+++|++||.|.+|++++++ +.++|||||+|.+.++|.+|++.|+|..+ .++.|+|.|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 35689999999999999999999999999999999986 45899999999999999999999999999 789999999
Q ss_pred cCCCCCCC----CCCCCCceEEEcCCCcccCHHH
Q 022077 160 ASFGAGEK----RDDTPDHTIFVGDLAADVTDYM 189 (303)
Q Consensus 160 ~~~~~~~~----~~~~~~~~l~v~nl~~~~~~~~ 189 (303)
+....... .......+|||+||+.++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 87543221 2233456799999999998863
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.86 E-value=4.1e-22 Score=151.33 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=85.5
Q ss_pred EEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceE
Q 022077 125 YGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (303)
Q Consensus 125 ~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~ 204 (303)
++|++|++...+..|+..++|....+.+ ...+.. ........++|||+||+.++++++|+++|+ .||.|++|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v 77 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGR----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGDV 77 (135)
T ss_dssp --------------------------------CCSCC----SCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCSEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCC----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEE
Confidence 6888999999999999988887653332 122222 123445678999999999999999999998 99999999
Q ss_pred EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCC
Q 022077 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
+|+.++.+++++|||||+|++.++|.+|+..|||..|+|+.|+|.|++.++....
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 132 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTT
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCcc
Confidence 9999988899999999999999999999999999999999999999998776543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=6.6e-22 Score=139.71 Aligned_cols=84 Identities=12% Similarity=0.271 Sum_probs=77.8
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCC-CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEee
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPMRIGP 250 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~ 250 (303)
+++|||+|||.++++++|+++|+ .|| .|++|+|++|+.+|.++|||||+|.+.++|.+|++.+ ++..++|+.|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999998 999 8999999999999999999999999999999999987 46679999999999
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887644
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=140.77 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=80.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.+.++|||+||+.++++++|+++|+ +||.|++|+|++|..+++++|||||+|++.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4578999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 022077 251 ATNKKT 256 (303)
Q Consensus 251 ~~~~~~ 256 (303)
+..++.
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 29
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=4e-21 Score=151.25 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=81.0
Q ss_pred EEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCCC----------------CCCCCCCCCceEEEcCCCcccCHHHHH
Q 022077 128 IEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA----------------GEKRDDTPDHTIFVGDLAADVTDYMLQ 191 (303)
Q Consensus 128 v~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~----------------~~~~~~~~~~~l~v~nl~~~~~~~~l~ 191 (303)
.+|++.++|..++..|++......++..+..++.... .........++|||+||+..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999988776556556555532211 011223556789999999999999999
Q ss_pred HHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCCCC
Q 022077 192 ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTVSG 259 (303)
Q Consensus 192 ~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 259 (303)
++|+ .||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..+.....
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 9998 999999999999988999999999999999999999999999999999999999998776543
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=135.72 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=77.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..+++|||+|||.++|+++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|.+|++.|||..+ .|+.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred ecC
Q 022077 159 WAS 161 (303)
Q Consensus 159 ~~~ 161 (303)
|+.
T Consensus 95 ~Ak 97 (99)
T 4fxv_A 95 YAR 97 (99)
T ss_dssp ECC
T ss_pred Eee
Confidence 985
No 31
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=5.9e-21 Score=156.67 Aligned_cols=112 Identities=27% Similarity=0.403 Sum_probs=96.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
..+.++|||+||+.++++++|+++|+ +||.|++|+|++|..+++++|||||+|.+.++|.+|+..+|+..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34668999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 250 PATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
++........ ...++|||+++. ++| ++|.++|.
T Consensus 91 ~~~~~~~~~~--------------------~~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 91 WSQRDPSLRK--------------------SGVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp ECCCCTHHHH--------------------HCTTEEEEESCCTTCCHHHHHHHHG
T ss_pred cccccccccc--------------------cccccceECCcccccHHHHHHHHHh
Confidence 9876543221 123589999666 788 88888773
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.9e-20 Score=129.97 Aligned_cols=82 Identities=37% Similarity=0.635 Sum_probs=78.4
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
+.+|||+||+.++++++|+++|+ .||.|.++.++.+..+++++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 36899999999999999999998 99999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 022077 253 NKK 255 (303)
Q Consensus 253 ~~~ 255 (303)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=5.9e-20 Score=135.72 Aligned_cols=92 Identities=33% Similarity=0.545 Sum_probs=85.1
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 167 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
.......++|||+||+.++++++|+++|+ .||.|++|+|+.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556789999999999999999999998 99999999999998899999999999999999999999999999999999
Q ss_pred EEeecccCCCCCC
Q 022077 247 RIGPATNKKTVSG 259 (303)
Q Consensus 247 ~v~~~~~~~~~~~ 259 (303)
+|.|++.+.....
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999998876543
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-21 Score=136.64 Aligned_cols=82 Identities=13% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCC--cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS--TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FCSTR 244 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~ 244 (303)
..-.+|||+||+.++++++|+++|+ .||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|||. .++||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 3457899999999999999999998 9995 679999999999999999999999999999999999997 48999
Q ss_pred eeEEeeccc
Q 022077 245 PMRIGPATN 253 (303)
Q Consensus 245 ~l~v~~~~~ 253 (303)
.|+|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=131.53 Aligned_cols=83 Identities=34% Similarity=0.564 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+++++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3568999999999999999999998 999999999999988999999999999999999999999999999999999999
Q ss_pred cccC
Q 022077 251 ATNK 254 (303)
Q Consensus 251 ~~~~ 254 (303)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.8e-20 Score=133.90 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=80.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
++++|||+||+.++++++|+++|+ .||.|.+++|+.++.+|.++|||||+|++.++|.+|+..|||..++|+.|+|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 368999999999999999999998 9999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022077 252 TNKKTV 257 (303)
Q Consensus 252 ~~~~~~ 257 (303)
+.++..
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 987644
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=134.54 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=84.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4456789999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99999876553
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.4e-20 Score=136.36 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999998 999999999999998999999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99999876543
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=132.83 Aligned_cols=87 Identities=32% Similarity=0.580 Sum_probs=82.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.++++..+..+++++|||||+|++.++|.+|+..|||..++|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3568999999999999999999998 999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 022077 251 ATNKKTVS 258 (303)
Q Consensus 251 ~~~~~~~~ 258 (303)
++.+....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 99887654
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=132.16 Aligned_cols=88 Identities=20% Similarity=0.406 Sum_probs=81.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+++|+.+. +++++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3446678999999999999999999998 99999999999998 899999999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++++...
T Consensus 90 v~~a~~~~~~ 99 (100)
T 2do4_A 90 VAISNSGPSS 99 (100)
T ss_dssp EEECCCCSCC
T ss_pred EEECCCCCCC
Confidence 9999987654
No 41
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=3.6e-20 Score=145.74 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=95.8
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
+++|||+|||.++++++|+++|+ .||.|.+++++.+..+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999999999999999998 99999999999998899999999999999999999999999999999999999998
Q ss_pred cCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 253 NKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
++... ...++|||+++. +++ ++|.++|.
T Consensus 81 ~~~~~----------------------~~~~~l~v~nl~~~~t~~~l~~~f~ 110 (167)
T 1fxl_A 81 PSSAS----------------------IRDANLYVSGLPKTMTQKELEQLFS 110 (167)
T ss_dssp CCCGG----------------------GTTCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCccc----------------------CCCCcEEECCCCCcCCHHHHHHHHH
Confidence 65432 134689999776 677 88887773
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=132.72 Aligned_cols=88 Identities=27% Similarity=0.515 Sum_probs=82.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceE-EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA-KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...++|||+||+.++++++|+++|+ .||.|.++ +|+.++.++.++|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999998 99999999 999998899999999999999999999999999999999999999
Q ss_pred ecccCCCCCC
Q 022077 250 PATNKKTVSG 259 (303)
Q Consensus 250 ~~~~~~~~~~ 259 (303)
|++.+.....
T Consensus 82 ~a~~~~~~~~ 91 (96)
T 1x5t_A 82 YAFKKDSKGS 91 (96)
T ss_dssp ESCCCCCCCC
T ss_pred EecccCCCCC
Confidence 9998876543
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=9.5e-21 Score=133.60 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=72.8
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCC--CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
.+|||+||+.++++++|+++|+ .|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999998 999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 022077 252 TNKKT 256 (303)
Q Consensus 252 ~~~~~ 256 (303)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.3e-20 Score=131.14 Aligned_cols=85 Identities=24% Similarity=0.399 Sum_probs=80.3
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.++.++.+..+++++|||||+|++.++|.+|+..|||..++|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456678999999999999999999998 999999999999998899999999999999999999999999999999999
Q ss_pred Eeeccc
Q 022077 248 IGPATN 253 (303)
Q Consensus 248 v~~~~~ 253 (303)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=133.07 Aligned_cols=88 Identities=27% Similarity=0.409 Sum_probs=82.8
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.+++|+.+..+++++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999998 99999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999987653
No 46
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=2.6e-20 Score=146.85 Aligned_cols=108 Identities=23% Similarity=0.352 Sum_probs=96.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
++++|||+|||.++++++|+++|+ .||.|.+++++.+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999999999999999999998 9999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
..+... ...++|||+++. +++ ++|.++|.
T Consensus 81 ~~~~~~----------------------~~~~~l~v~nl~~~~t~~~l~~~f~ 111 (168)
T 1b7f_A 81 RPGGES----------------------IKDTNLYVTNLPRTITDDQLDTIFG 111 (168)
T ss_dssp CCCSST----------------------TTTCEEEEESCCTTCCHHHHHHHHT
T ss_pred CCCccc----------------------CCCCCEEEeCCCCCCCHHHHHHhhh
Confidence 865432 235799999776 677 88888773
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=132.08 Aligned_cols=87 Identities=23% Similarity=0.404 Sum_probs=81.7
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcc-eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee---
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTK-GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP--- 245 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 245 (303)
....++|||+||+.++++++|+++|+ .||.|. +++|++++.+++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 45678999999999999999999998 999999 9999999989999999999999999999999999999999999
Q ss_pred -eEEeecccCCCC
Q 022077 246 -MRIGPATNKKTV 257 (303)
Q Consensus 246 -l~v~~~~~~~~~ 257 (303)
|+|.|++.....
T Consensus 85 ~l~v~~a~~~~~~ 97 (99)
T 2div_A 85 RFKLNYATYSGPS 97 (99)
T ss_dssp ECCEEETTCCSSS
T ss_pred eEEEeecCCCCCC
Confidence 999999877543
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=133.74 Aligned_cols=90 Identities=23% Similarity=0.383 Sum_probs=83.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++|+|+.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999998 9999999999999889999999999999999999999999999999999999
Q ss_pred eecccCCCCCC
Q 022077 249 GPATNKKTVSG 259 (303)
Q Consensus 249 ~~~~~~~~~~~ 259 (303)
.|++.+.....
T Consensus 87 ~~a~~~~~~~~ 97 (102)
T 2cqb_A 87 NLAKPMRIKES 97 (102)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998876543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.3e-20 Score=129.40 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.++.++.+..+++++|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999998 99999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q 022077 250 PAT 252 (303)
Q Consensus 250 ~~~ 252 (303)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=131.47 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=82.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|++.++|.+|++ ||+..++|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999998 99999999999998899999999999999999999998 9999999999999
Q ss_pred eecccCCCCC
Q 022077 249 GPATNKKTVS 258 (303)
Q Consensus 249 ~~~~~~~~~~ 258 (303)
.|++.+....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999876553
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.8e-20 Score=134.16 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=84.3
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC------Ccee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN------GVFC 241 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~ 241 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+..++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3446678999999999999999999998 99999999999999899999999999999999999999999 9999
Q ss_pred CCeeeEEeecccCCCCCC
Q 022077 242 STRPMRIGPATNKKTVSG 259 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~~~~ 259 (303)
+|+.|+|.|+..+.....
T Consensus 89 ~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SSCEEEEECCCCCCCCCC
T ss_pred cCEEEEEEECCCCccCCC
Confidence 999999999998876543
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=134.25 Aligned_cols=87 Identities=30% Similarity=0.624 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+++|+.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456678999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCC
Q 022077 248 IGPATNKK 255 (303)
Q Consensus 248 v~~~~~~~ 255 (303)
|.|++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998774
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.3e-19 Score=131.57 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=82.1
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC---e
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST---R 244 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~ 244 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+. ++.++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3345689999999999999999999998 99999999999997 79999999999999999999999999999988 9
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.|++.+..+.
T Consensus 88 ~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 88 SLVVKFADTDKESG 101 (105)
T ss_dssp CCEEEESCSSCCCS
T ss_pred cEEEEECccCcccC
Confidence 99999999887553
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=133.81 Aligned_cols=89 Identities=28% Similarity=0.469 Sum_probs=83.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456778999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++.+...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999987654
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=133.65 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=81.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.+|.|..+..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 45568999999999999999999998 99999999999999899999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 022077 250 PATNKKT 256 (303)
Q Consensus 250 ~~~~~~~ 256 (303)
|++.+..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988653
No 56
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=133.39 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.++.|..+..++.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3456678999999999999999999998 999999999999998899999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.++...
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99999876553
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=131.56 Aligned_cols=89 Identities=30% Similarity=0.538 Sum_probs=82.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+ ++.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4456788999999999999999999998 9999999999998 789999999999999999999999999999999999
Q ss_pred EeecccCCCCCC
Q 022077 248 IGPATNKKTVSG 259 (303)
Q Consensus 248 v~~~~~~~~~~~ 259 (303)
|.|++.+..+..
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 999998876543
No 58
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=134.14 Aligned_cols=87 Identities=21% Similarity=0.431 Sum_probs=81.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|++|.|..+. +|+++|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999998 99999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+....
T Consensus 82 ~a~~~~~~~ 90 (116)
T 2fy1_A 82 QAKKPSFQS 90 (116)
T ss_dssp ECCCSSCSS
T ss_pred ECCCCCCCC
Confidence 999876543
No 59
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=5.3e-20 Score=148.82 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=95.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+|||.++++++|+++|+ .||.|.+|+|+.+..+|.++|||||+|.+.++|.+|+.. ++..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 345678999999999999999999998 999999999999998999999999999999999999976 999999999999
Q ss_pred eecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
.++..+...... ......++|||+++. ++| ++|.++|.
T Consensus 87 ~~~~~~~~~~~~----------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~ 126 (196)
T 1l3k_A 87 KRAVSREDSQRP----------------GAHLTVKKIFVGGIKEDTEEHHLRDYFE 126 (196)
T ss_dssp EECCC---------------------------CCSEEEEECCTTTCCHHHHHHHHT
T ss_pred ecccCccccccc----------------ccCCCcceEEEeCCCCCCCHHHHHHHHh
Confidence 998876433211 122345799999776 788 88888773
No 60
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7e-20 Score=131.29 Aligned_cols=87 Identities=14% Similarity=0.301 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCC---CCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRL---TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.+.++|||+||+.++++++|+++|+ .||.|.+|+|..+.. ++.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4568999999999999999999998 999999999999876 558899999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99999876554
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=132.48 Aligned_cols=88 Identities=31% Similarity=0.508 Sum_probs=82.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++++|+.+..++.++|||||+|++.++|.+|++.|||..|+|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999998 9999999999999888999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=132.57 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=83.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEee-CCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVID-RLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRP 245 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~ 245 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+ ..++.++|||||+|.+.++|.+|+..| ||..|.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4456789999999999999999999998 9999999999999 778999999999999999999999999 999999999
Q ss_pred eEEeecccCCCCC
Q 022077 246 MRIGPATNKKTVS 258 (303)
Q Consensus 246 l~v~~~~~~~~~~ 258 (303)
|+|.|++.+....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876553
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.4e-20 Score=135.34 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCc------ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC-
Q 022077 171 TPDHTIFVGDLAA------DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST- 243 (303)
Q Consensus 171 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 243 (303)
..+++|||+|||. ++++++|+++|+ +||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 999999999998 99999999999999899999999999999999999999999999999
Q ss_pred eeeEEeecccCC
Q 022077 244 RPMRIGPATNKK 255 (303)
Q Consensus 244 ~~l~v~~~~~~~ 255 (303)
+.|+|.++.++.
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999998764
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=129.77 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.++++..++.+++++|||||+|++.++|.+|++.|||..++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3446678999999999999999999998 999999999999998899999999999999999999999999999999999
Q ss_pred Eeecc
Q 022077 248 IGPAT 252 (303)
Q Consensus 248 v~~~~ 252 (303)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 65
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=129.70 Aligned_cols=84 Identities=29% Similarity=0.381 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
......++|||+||+.++++++|+++|+ .||.|.+ ++++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3446678999999999999999999998 9999999 999999889999999999999999999999999999
Q ss_pred eeCCeeeEEeecc
Q 022077 240 FCSTRPMRIGPAT 252 (303)
Q Consensus 240 ~~~g~~l~v~~~~ 252 (303)
.++|+.|+|.|++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=6.5e-20 Score=137.97 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=82.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
....+.++|||+||+.++++++|+++|+ .||.|.+|+|++++.+++++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456678999999999999999999998 999999999999998999999999999999999999999999999999999
Q ss_pred EeecccCCC
Q 022077 248 IGPATNKKT 256 (303)
Q Consensus 248 v~~~~~~~~ 256 (303)
|.|++.++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999998763
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=130.74 Aligned_cols=88 Identities=22% Similarity=0.407 Sum_probs=81.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .|| |.+|+|+.+..+++++|||||+|++.++|.+|+ .|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 3456678999999999999999999998 997 999999999989999999999999999999999 8999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99999876543
No 68
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=133.14 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=83.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcc--------eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--------GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
......++|||+||+.++++++|+++|+ .||.|. .|+|+.++.+++++|||||+|.+.++|.+|+..|||.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 4456789999999999999999999998 999999 6999999889999999999999999999999999999
Q ss_pred eeCCeeeEEeecccCCCCC
Q 022077 240 FCSTRPMRIGPATNKKTVS 258 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~~~~~ 258 (303)
.|+|+.|+|.|++.+....
T Consensus 89 ~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp EETTEECEEECSSCCCCST
T ss_pred ccCCCEEEEEECCCCCCCC
Confidence 9999999999999887654
No 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=137.49 Aligned_cols=91 Identities=25% Similarity=0.472 Sum_probs=84.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.++.+++++|||||+|++.++|.+|++.|||..|+|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456678999999999999999999998 999999999999998999999999999999999999999999999999999
Q ss_pred EeecccCCCCCC
Q 022077 248 IGPATNKKTVSG 259 (303)
Q Consensus 248 v~~~~~~~~~~~ 259 (303)
|.|++.+..+..
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998765543
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=131.24 Aligned_cols=89 Identities=48% Similarity=0.800 Sum_probs=82.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhh-CCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-eCCeee
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRAR-YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF-CSTRPM 246 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l 246 (303)
.....++|||+||+.++++++|+++|+ . ||.|.+++|+.+. ++.++|||||+|.+.++|.+|+..|||.. ++|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 345678999999999999999999998 8 9999999999998 89999999999999999999999999999 999999
Q ss_pred EEeecccCCCCCC
Q 022077 247 RIGPATNKKTVSG 259 (303)
Q Consensus 247 ~v~~~~~~~~~~~ 259 (303)
+|.|+..+.....
T Consensus 83 ~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 83 RLSVAIPKASRVK 95 (104)
T ss_dssp CCCBCCCCCSCCC
T ss_pred EEEEccCCCcCCC
Confidence 9999988765543
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=8.7e-20 Score=132.76 Aligned_cols=90 Identities=21% Similarity=0.429 Sum_probs=83.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---CCe
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---STR 244 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 244 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.++.+++++|||||+|.+.++|.+|+..|||..+ .|+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 4456678999999999999999999998 999999999999998899999999999999999999999999997 899
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.|++.+....
T Consensus 87 ~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 87 PIQVKPADSESRGG 100 (106)
T ss_dssp CCEEEECCCCSCCC
T ss_pred eEEEEECCcccccC
Confidence 99999999877553
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=9.6e-20 Score=133.45 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=82.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.++.|+.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999998 9999999999999889999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.+..+
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999887643
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=3e-19 Score=133.70 Aligned_cols=87 Identities=30% Similarity=0.428 Sum_probs=81.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++|+|..+. +|+++|||||+|++.++|.+|+..|||..++|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 446678999999999999999999998 99999999999998 8999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|+......
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 74
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=1.8e-19 Score=146.60 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCceEEEcCCC-cccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 172 PDHTIFVGDLA-ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 172 ~~~~l~v~nl~-~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
++++|||+||+ ..+++++|+++|+ .||.|.+|+|+++. +|||||+|++.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 56899999999 8999999999998 99999999998653 79999999999999999999999999999999999
Q ss_pred cccCCCCCCcc--ccC-C---C--------CccCccc-cccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 251 ATNKKTVSGQQ--QYP-K---A--------SYQNSQV-AQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 251 ~~~~~~~~~~~--~~~-~---~--------~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
++.+....... ... . . .+..... ..+.-.+.+.+|||+|+. ++| ++|.++|
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F 144 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC 144 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 97654211100 000 0 0 0100000 001112334699999777 677 8888887
No 75
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=9.4e-20 Score=143.21 Aligned_cols=106 Identities=18% Similarity=0.333 Sum_probs=93.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
++|||+|||.++++++|+++|+ .||.|.+++++.++ +++++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999998 99999999999997 577899999999999999999999999999999999999976
Q ss_pred CCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 254 KKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
+... .....++|||+++. ++| ++|.++|
T Consensus 79 ~~~~--------------------~~~~~~~l~v~nl~~~~t~~~l~~~f 108 (166)
T 3md3_A 79 SQQS--------------------SSDDTFNLFVGDLNVNVDDETLRNAF 108 (166)
T ss_dssp CCCC--------------------CCTTCEEEEEESCCTTCCHHHHHHHH
T ss_pred CCCC--------------------CCCCCceEEECCCCCCCCHHHHHHHH
Confidence 6432 12345799999776 788 8888877
No 76
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=131.83 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=77.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+||++++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|.+|++.|||..+ .++.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 458999999999999999999999999999999999999999999999999999999999999999999 789999998
Q ss_pred cCC
Q 022077 160 ASF 162 (303)
Q Consensus 160 ~~~ 162 (303)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 863
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=127.77 Aligned_cols=84 Identities=21% Similarity=0.379 Sum_probs=77.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCC-ceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR-TKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
..++|||+||+.++++++|+++|+ .||.|.++.+..+..++. ++|||||+|.+.++|.+|+..|||..++|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999998 999999999999986665 899999999999999999999999999999999999
Q ss_pred cccCCC
Q 022077 251 ATNKKT 256 (303)
Q Consensus 251 ~~~~~~ 256 (303)
+.+...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=128.67 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.++.++.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45568999999999999999999998 99999999999998899999999999999999999999999999999999999
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
|++.+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987653
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=140.86 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=78.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCC--CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
..++|||+||+.++++++|+++|+ .|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999998 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
++..+.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998754
No 80
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=130.88 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=82.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|++.++|.+|+.. |+..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 4456778999999999999999999998 999999999999988999999999999999999999998 99999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|+.++....
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99999887553
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=130.37 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceeCCeeeE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPMR 247 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~ 247 (303)
....++|||+||++++++++|+++|+ .||.|++|+|+++ +|||||+|++.++|.+|++.|+ +..+.|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 45678999999999999999999998 9999999999865 7899999999999999999886 4789999999
Q ss_pred EeecccCCCCCC
Q 022077 248 IGPATNKKTVSG 259 (303)
Q Consensus 248 v~~~~~~~~~~~ 259 (303)
|.|++.+.....
T Consensus 86 V~~A~~~~~~~~ 97 (105)
T 1sjq_A 86 IQFSNHKELKTD 97 (105)
T ss_dssp BCCCSSSSCCCT
T ss_pred EEEcCCCCCCcc
Confidence 999998766543
No 82
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=130.52 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=81.1
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCC-CCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
......++|||+||+.++++++|+++|+ .|| |.+|+|+.+..+ ++++|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 3445678999999999999999999998 999 999999999877 899999999999999999999 999999999999
Q ss_pred EEeecccCCCCC
Q 022077 247 RIGPATNKKTVS 258 (303)
Q Consensus 247 ~v~~~~~~~~~~ 258 (303)
+|.|++.+....
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876553
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-18 Score=132.42 Aligned_cols=86 Identities=27% Similarity=0.498 Sum_probs=79.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999 7889999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876533
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-19 Score=127.27 Aligned_cols=89 Identities=18% Similarity=0.402 Sum_probs=81.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+|+|+.+.. .++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456779999999999999999999998 999999999999863 4799999999999999999999999999999999
Q ss_pred EeecccCCCCCC
Q 022077 248 IGPATNKKTVSG 259 (303)
Q Consensus 248 v~~~~~~~~~~~ 259 (303)
|.|++.+.....
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cq3_A 87 VNNATARVMTNS 98 (103)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999998876543
No 85
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-19 Score=127.80 Aligned_cols=88 Identities=25% Similarity=0.436 Sum_probs=79.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+.. .++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 3456678999999999999999999998 999999999999853 3689999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2cqi_A 87 VNWATTPSSQK 97 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEECCCCcccc
Confidence 99999876543
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.78 Aligned_cols=85 Identities=32% Similarity=0.563 Sum_probs=80.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||+||+.++++++|+++|+ .||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457899999999999999999998 9999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022077 252 TNKKTV 257 (303)
Q Consensus 252 ~~~~~~ 257 (303)
..+...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987654
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=130.96 Aligned_cols=88 Identities=32% Similarity=0.459 Sum_probs=81.6
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.++.+++++|||||+|++.++|.+|+..|++ .|+|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 4456779999999999999999999998 999999999999988999999999999999999999999998 89999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|+..+...
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876544
No 88
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.3e-19 Score=126.19 Aligned_cols=81 Identities=19% Similarity=0.471 Sum_probs=77.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
.++|||+||+.++++++|+++|+ .||.|.++++..+..+++++|||||+|.+.++|.+|+ .|||..++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 47899999999999999999998 9999999999999889999999999999999999999 999999999999999998
Q ss_pred cCC
Q 022077 253 NKK 255 (303)
Q Consensus 253 ~~~ 255 (303)
.+.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=127.80 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++++|..+.. ++++|||||+|++.++|.+|+..|||..++|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999998 999999999999974 899999999999999999999999999999999999
Q ss_pred eeccc
Q 022077 249 GPATN 253 (303)
Q Consensus 249 ~~~~~ 253 (303)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.1e-19 Score=134.86 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=78.7
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++++|+.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred Eeecc
Q 022077 248 IGPAT 252 (303)
Q Consensus 248 v~~~~ 252 (303)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99975
No 91
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.5e-19 Score=126.10 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|++++|..+ +++++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999998 9999999999985 78899999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
|++.+...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99887644
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-20 Score=137.86 Aligned_cols=89 Identities=15% Similarity=0.274 Sum_probs=82.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce--EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----ee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV----FC 241 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~ 241 (303)
......++|||+||+.++++++|+++|+ .||.|.. |+|++|+.+|+++|||||+|++. +|.+|+..|||. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 3446678999999999999999999998 9999976 99999999999999999999999 999999999999 99
Q ss_pred CCeeeEEeecccCCCCC
Q 022077 242 STRPMRIGPATNKKTVS 258 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~~~ 258 (303)
+|+.|+|.|++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRDM 112 (131)
T ss_dssp GGCCCCCEECCCSCCCC
T ss_pred CCEEEEEEECCCCCCCC
Confidence 99999999998876543
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=124.17 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .| .|.+++|+++ .+|+++|||||+|++.++|.+|+. |||..++|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 45678999999999999999999998 99 9999999999 689999999999999999999999 99999999999999
Q ss_pred ecccCCC
Q 022077 250 PATNKKT 256 (303)
Q Consensus 250 ~~~~~~~ 256 (303)
++..+..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987743
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=127.60 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce--eCCee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRP 245 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~ 245 (303)
....++++|||+||+.++++++|+++|+ +||.|++++++++ +|+|||+|++.++|.+|++.|++.. ++|+.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 3456789999999999999999999998 9999999999753 7899999999999999999999875 88999
Q ss_pred eEEeecccCC
Q 022077 246 MRIGPATNKK 255 (303)
Q Consensus 246 l~v~~~~~~~ 255 (303)
|+|.|++.++
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999998765
No 95
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=126.57 Aligned_cols=81 Identities=15% Similarity=0.364 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 150 (303)
...++|||+||+.++|+++|+++|++||.|.+ +.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 45689999999999999999999999999999 99999998999999999999999999999999999999
Q ss_pred CCceeEeeecC
Q 022077 151 GEQNFRLNWAS 161 (303)
Q Consensus 151 ~~~~i~v~~~~ 161 (303)
.++.++|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 78899998873
No 96
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=125.93 Aligned_cols=89 Identities=26% Similarity=0.329 Sum_probs=81.5
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 167 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
.......++|||+||+.++++++|+++|+ .||.|++|+|+.++.+++++|||||+|++.++|.+|+. ++..++|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34556778999999999999999999998 99999999999998899999999999999999999998 5789999999
Q ss_pred EEeecccCCCCC
Q 022077 247 RIGPATNKKTVS 258 (303)
Q Consensus 247 ~v~~~~~~~~~~ 258 (303)
+|.|+..+....
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cqg_A 86 DCKLPNSKQSQD 97 (103)
T ss_dssp EEECCCTTCCCC
T ss_pred EEEecCCCCcCC
Confidence 999999876553
No 97
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4.9e-19 Score=128.99 Aligned_cols=82 Identities=34% Similarity=0.472 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+..+++++|+++|+ .||.|++++|+.+. +++++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 346678999999999999999999998 99999999999998 8999999999999999999999999999999999999
Q ss_pred eecc
Q 022077 249 GPAT 252 (303)
Q Consensus 249 ~~~~ 252 (303)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 98
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=127.07 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCcccCHHHHH----HHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
....++|||+||+.++++++|+ ++|+ .||.|.+|+|+.++.+ +|||||+|++.++|.+|++.|||..++|+.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456899999999999999999 9998 9999999999988754 789999999999999999999999999999
Q ss_pred eEEeecccCCC
Q 022077 246 MRIGPATNKKT 256 (303)
Q Consensus 246 l~v~~~~~~~~ 256 (303)
|+|.|++++..
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 99
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-18 Score=127.69 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=81.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++|+|+.+. +++++|||||+|++.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3445678999999999999999999998 99999999999997 689999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++......
T Consensus 88 v~~a~~~~~~~ 98 (114)
T 2do0_A 88 VKMDERALPKG 98 (114)
T ss_dssp EEECSCCCCCS
T ss_pred EEEcccCCCCC
Confidence 99998765443
No 100
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.3e-18 Score=128.38 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|++|++.|+|..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345668999999999999999999999999999999999998999999999999999999999999999999 789999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999875533
No 101
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=126.57 Aligned_cols=87 Identities=28% Similarity=0.447 Sum_probs=80.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 789999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999876533
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=130.14 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=73.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
++|||+||+.++++++|+++|+ .||.|.++.+..+ ++|||||+|++.++|.+|+..|||..++|+.|+|.|++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999998 9999999999877 589999999999999999999999999999999999998
Q ss_pred CCCC
Q 022077 254 KKTV 257 (303)
Q Consensus 254 ~~~~ 257 (303)
+...
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7644
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2.4e-19 Score=127.71 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.++.++.+..+++++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 4468999999999999999999998 999999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 022077 251 ATN 253 (303)
Q Consensus 251 ~~~ 253 (303)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=126.18 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=75.6
Q ss_pred CCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh--CCceeCCe
Q 022077 167 KRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM--NGVFCSTR 244 (303)
Q Consensus 167 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~ 244 (303)
.....++++|||+||+.++++++|+++|+ .||.|+++.++.+ +|||||+|++.++|.+|++.| ++..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 34456788999999999999999999998 9999999988764 789999999999999999977 46789999
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.|++.+....
T Consensus 82 ~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 82 PIYIQYSNHKELKT 95 (101)
T ss_dssp ECEEEECSCSSCCC
T ss_pred EEEEEEcCcccCcC
Confidence 99999999876554
No 105
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.9e-19 Score=123.52 Aligned_cols=82 Identities=22% Similarity=0.421 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.+++++.++.+|+++|||||+|.+.++|.+|++ +++..++|+.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3456678999999999999999999998 99999999999999899999999999999999999996 488899999999
Q ss_pred Eeec
Q 022077 248 IGPA 251 (303)
Q Consensus 248 v~~~ 251 (303)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 106
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.79 E-value=4.3e-19 Score=140.68 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=93.2
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCC--CceeEEEEEeCCHHHHHHHHHHhCCceeC---Ceee
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTG--RTKGYGFVRFGDESEQLRAMTEMNGVFCS---TRPM 246 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 246 (303)
..++|||+|||.++++++|+++|+ .||.|.+++++++..++ +++|||||+|.+.++|.+|++.|||..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467999999999999999999998 99999999999998776 88999999999999999999999998875 6788
Q ss_pred EEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 247 RIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
.+.++..+.... ..+++|||+++. ++| ++|.++|.
T Consensus 81 ~~~~~~~~~~~~---------------------~~~~~l~v~nl~~~~t~~~l~~~F~ 117 (175)
T 3nmr_A 81 QMKPADSEKNNA---------------------VEDRKLFIGMISKKCTENDIRVMFS 117 (175)
T ss_dssp EEEECGGGCCSC---------------------GGGSEEEEESCCTTCCHHHHHHHHG
T ss_pred EEcccccccccc---------------------CCCCeEEEcCCCCcCCHHHHHHHHH
Confidence 888877654321 235689999766 788 88888773
No 107
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-20 Score=129.01 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=75.0
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcC-CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC-CCCCCCCCceeEee
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN-GTPMPNGEQNFRLN 158 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-g~~~~~~~~~i~v~ 158 (303)
+++|||+|||.++|+++|+++|++|| .|.++++++++.+|+++|||||+|.+.++|.+|++.++ +..+ .|+.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 47899999999999999999999999 79999999999999999999999999999999998774 4557 78999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9875533
No 108
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=127.53 Aligned_cols=88 Identities=26% Similarity=0.532 Sum_probs=81.2
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+||+.++|+++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3446778999999999999999999999999999999999988999999999999999999999999999999 78999
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.|+.....
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999976543
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=129.66 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+|||.++++++|+++|+ .||.|.+|+|+++.. |.++|||||+|++.++|.+|+. ++|..++|+.|+|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 345568999999999999999999998 999999999999986 9999999999999999999999 8999999999999
Q ss_pred eeccc
Q 022077 249 GPATN 253 (303)
Q Consensus 249 ~~~~~ 253 (303)
.|+..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99776
No 110
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=3.2e-19 Score=130.29 Aligned_cols=87 Identities=23% Similarity=0.359 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.+|+|+++..+|+++|||||+|++.++|.+|+..+ +..++|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 345678999999999999999999998 9999999999999888999999999999999999999986 59999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.++..+..+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987644
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=8.9e-19 Score=136.50 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=82.4
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++|.|+.+..++.++|||||+|++.++|.+|+..|||..|+|+.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999998 9999999999999989999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.+...
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999886554
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=129.61 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRP 245 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~ 245 (303)
....++++|||+||++++++++|+++|+ .||.|++|+|+.+ +|||||+|++.++|.+|+..|++ ..+.|+.
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 3445678999999999999999999998 9999999999876 78999999999999999999874 6899999
Q ss_pred eEEeecccCCCCC
Q 022077 246 MRIGPATNKKTVS 258 (303)
Q Consensus 246 l~v~~~~~~~~~~ 258 (303)
|+|.|++.+....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998877654
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=128.19 Aligned_cols=83 Identities=10% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCCCCCceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc--eeCCe
Q 022077 168 RDDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTR 244 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 244 (303)
....++++|||+||++ ++++++|+++|+ .||.|.+|.|+++ +|||||+|++.++|.+|+..||+. .|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 3345788999999999 999999999998 9999999999865 579999999999999999999864 59999
Q ss_pred eeEEeecccCCCC
Q 022077 245 PMRIGPATNKKTV 257 (303)
Q Consensus 245 ~l~v~~~~~~~~~ 257 (303)
.|+|.|++.++..
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 83 PVRVHLSQKYKRI 95 (102)
T ss_dssp ECEEEEECCCTTS
T ss_pred EEEEEECCCCCCC
Confidence 9999999976543
No 114
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=130.28 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHH---HHHhhhCCCcceEEEEeeCCCC---CceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQ---ETFRARYPSTKGAKVVIDRLTG---RTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~---~~f~~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
......++|||+||+.++++++|+ ++|+ +||.|.+++|..+..++ +++|||||+|++.++|.+|++.|||..|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 344567899999999999999999 9998 99999999999887644 5569999999999999999999999999
Q ss_pred CCeeeEEeecccCCC
Q 022077 242 STRPMRIGPATNKKT 256 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~ 256 (303)
+|+.|+|.|+..+..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999998763
No 115
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=129.63 Aligned_cols=85 Identities=19% Similarity=0.428 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|+++++..+. +.++|||||+|++.++|.+|+..|||..++|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456778999999999999999999998 99999999999885 45799999999999999999999999999999999
Q ss_pred EeecccCC
Q 022077 248 IGPATNKK 255 (303)
Q Consensus 248 v~~~~~~~ 255 (303)
|.|++.+.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998763
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=3.9e-19 Score=133.50 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=83.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.+|.|+.+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345578999999999999999999998 9999999999999889999999999999999999999999999999999999
Q ss_pred eecccCCCCCC
Q 022077 249 GPATNKKTVSG 259 (303)
Q Consensus 249 ~~~~~~~~~~~ 259 (303)
.|+..+.....
T Consensus 97 ~~a~~~~~~~~ 107 (126)
T 3ex7_B 97 DWCFVRGPPKG 107 (126)
T ss_dssp EESEESSSCCC
T ss_pred EEecCCCCCCC
Confidence 99998765543
No 117
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=127.64 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCC--ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC--CCCCCc
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE--VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP--MPNGEQ 153 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~~~~~ 153 (303)
...-.+|||+||++++|+++|+++|++||. +.+|++.+|+.+|+++|||||+|.+.++|.+|++.|||.. +...|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345679999999999999999999999995 6799999999999999999999999999999999999975 112789
Q ss_pred eeEeeecCC
Q 022077 154 NFRLNWASF 162 (303)
Q Consensus 154 ~i~v~~~~~ 162 (303)
.|+|+|+..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 118
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=123.93 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3446678999999999999999999999999999999999998999999999999999999999999999999 78999
Q ss_pred EeeecCC
Q 022077 156 RLNWASF 162 (303)
Q Consensus 156 ~v~~~~~ 162 (303)
+|.|+..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999863
No 119
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.8e-19 Score=122.49 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=72.1
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
+|||+|||.++++++|+++|+ .||.|.++++..++.+++++|||||+|++.++|.+|++ |||..++|+.|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999998 99999999999998889999999999999999999997 8999999999999986
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-20 Score=127.38 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
.+.++|||+||+.++++++|+++|+ .||.|.+++|+.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4578999999999999999999998 999999999999988999999999999999999999999999999999999988
Q ss_pred ccc
Q 022077 251 ATN 253 (303)
Q Consensus 251 ~~~ 253 (303)
.+.
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.4e-19 Score=121.83 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=69.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
+..|+|+||++.+++++|+++|. +||.|.++++.. ++|||||+|.+.++|.+|++.|||..+.|+.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56799999999999999999998 999999999865 48999999999999999999999999999999999995
Q ss_pred c
Q 022077 253 N 253 (303)
Q Consensus 253 ~ 253 (303)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 122
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.1e-19 Score=149.23 Aligned_cols=119 Identities=15% Similarity=0.304 Sum_probs=94.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||+||+.++++++|+++|+ .||.|.+|+++++..+++++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 357899999999999999999998 9999999999999888999999999999999999999999999999999999987
Q ss_pred ccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
..+....... ..........++|||+++. ++| ++|.++|.
T Consensus 106 ~~~~~~~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 147 (216)
T 2qfj_A 106 SNIGQAQPII-----------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 147 (216)
T ss_dssp SCCGGGHHHH-----------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT
T ss_pred CCccccchhh-----------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh
Confidence 7654321100 0000112345799999777 788 88888773
No 123
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=8.5e-19 Score=131.22 Aligned_cols=84 Identities=19% Similarity=0.411 Sum_probs=79.1
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||+||+.++++++|+++|+ .||.|++|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 467999999999999999999998 9999999999999889999999999999999999999 79999999999999999
Q ss_pred ccCCCC
Q 022077 252 TNKKTV 257 (303)
Q Consensus 252 ~~~~~~ 257 (303)
+.....
T Consensus 113 ~~~~~~ 118 (124)
T 2jwn_A 113 RTNMPG 118 (124)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 876544
No 124
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.2e-18 Score=129.31 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 788999
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.|+.
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 98863
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=125.98 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=73.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc--eeCCee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV--FCSTRP 245 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~ 245 (303)
....++++|||+||+.++++++|+++|+ +||.|.++.++.+ +|||||+|++.++|.+|++.|++. .++|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3456678999999999999999999998 9999999998754 789999999999999999988764 599999
Q ss_pred eEEeecccCCCC
Q 022077 246 MRIGPATNKKTV 257 (303)
Q Consensus 246 l~v~~~~~~~~~ 257 (303)
|+|.|++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999887654
No 126
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=122.66 Aligned_cols=82 Identities=29% Similarity=0.604 Sum_probs=76.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 78999999
Q ss_pred ecCC
Q 022077 159 WASF 162 (303)
Q Consensus 159 ~~~~ 162 (303)
|+..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 9864
No 127
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=128.70 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEE-eeCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceeCCeee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVV-IDRLTGRTKGYGFVRFGDESEQLRAMTEMN--GVFCSTRPM 246 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l 246 (303)
...++|||+||+.++++++|+++|+ .||. |.++.++ .+..+|.++|||||+|.+.++|.+|+..|| +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4568999999999999999999998 9998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEeecccCCCC
Q 022077 247 RIGPATNKKTV 257 (303)
Q Consensus 247 ~v~~~~~~~~~ 257 (303)
+|.|++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 128
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=5.3e-19 Score=130.52 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=91.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++|+++|+++|+.||.|.++.+.++ +.++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 45689999999999999999999999999999999875 45689999999999999999999999999 78899999
Q ss_pred ecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCC
Q 022077 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPS 200 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~ 200 (303)
|+...... .++....++++|.++|+ +||.
T Consensus 81 ~a~~~~~~------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp ECCHHHHT------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EecCChhh------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 98643221 57888899999999998 8886
No 129
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=124.23 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99986544
No 130
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=9e-20 Score=164.34 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=81.7
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+..+++++|.++|+ .||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45568999999999999999999998 99999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
|+..+...
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EeCCCCCC
Confidence 99876553
No 131
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=125.22 Aligned_cols=85 Identities=22% Similarity=0.489 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .|+.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.++...
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998643
No 132
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=122.18 Aligned_cols=84 Identities=25% Similarity=0.506 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 78999999
Q ss_pred ecCCCC
Q 022077 159 WASFGA 164 (303)
Q Consensus 159 ~~~~~~ 164 (303)
|+....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 987553
No 133
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=126.73 Aligned_cols=85 Identities=18% Similarity=0.313 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|++|+|..+ +.++|||||+|++.++|.+|++.||+..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999998 9999999999654 457899999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.++..
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999987654
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=130.22 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDR-LTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
....++|||+||+.++++++|+++|+ .|| |.+++|+.+. .+|+++|||||+|.+.++|.+|+ .|||..++|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 45678999999999999999999998 999 9999999998 58999999999999999999999 89999999999999
Q ss_pred eecccCC
Q 022077 249 GPATNKK 255 (303)
Q Consensus 249 ~~~~~~~ 255 (303)
.|++.+.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 135
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3.8e-18 Score=123.78 Aligned_cols=87 Identities=21% Similarity=0.354 Sum_probs=78.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC-CCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN-GEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~-~~~~i~ 156 (303)
....++|||+||+.++++++|+++|+.||.|.++.+.+++ +|+++|||||+|.+.++|.+|++.|+|..+.+ .++.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3567899999999999999999999999999999999998 79999999999999999999999999999842 128999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999976543
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=136.56 Aligned_cols=81 Identities=20% Similarity=0.445 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcC--CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
...++|||+||++++|+++|+++|+.|| .|.++++++++.+|+++|||||+|.+.++|.+|++.|+|..| .|+.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4568999999999999999999999999 999999999999999999999999999999999999999999 789999
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99885
No 137
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=124.35 Aligned_cols=87 Identities=18% Similarity=0.468 Sum_probs=79.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEec-CCCCCcccEEEEEEccHHHHHHHHHHh-CCCCCCCCCce
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRN-KQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQN 154 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~ 154 (303)
.....++|||+|||.++|+++|+++|+.||.|.+|.+.++ +.+++++|||||+|.+.++|.+|++.| +|..+ .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCE
Confidence 4456789999999999999999999999999999999998 788999999999999999999999999 99999 7889
Q ss_pred eEeeecCCCCC
Q 022077 155 FRLNWASFGAG 165 (303)
Q Consensus 155 i~v~~~~~~~~ 165 (303)
|+|.|+.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999976543
No 138
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=122.89 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ |++..+ .++.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999998 999999 7889999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99875533
No 139
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.90 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=80.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
+....++|||+|||.++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 456779999999999999999999999999999999999998999999999999999999999999999999 789999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99987653
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=129.72 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=80.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+|+|+.+..+++++|||||+|.+.++|.+|+.. ++..|+|+.|+|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3458999999999999999999998 999999999999988999999999999999999999998 99999999999999
Q ss_pred cccCCCCC
Q 022077 251 ATNKKTVS 258 (303)
Q Consensus 251 ~~~~~~~~ 258 (303)
+..+....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 99887553
No 141
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=125.51 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.++.+..++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999999 789999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99997553
No 142
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=131.72 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+|+|+.++.++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3457999999999999999999998 9999999999999988999999999999999999999 9999999999999999
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
++.+..+
T Consensus 101 a~~~~~~ 107 (114)
T 2cq4_A 101 SQAEKNR 107 (114)
T ss_dssp HHHHHHH
T ss_pred cCCCccC
Confidence 9887544
No 143
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=124.15 Aligned_cols=87 Identities=31% Similarity=0.440 Sum_probs=79.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .| ..++++.+..+++++|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999999999999998 66 4788899988999999999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2fc8_A 86 LDWAKPKGEGG 96 (102)
T ss_dssp EEECCCCCSSS
T ss_pred EEEecCCCCCC
Confidence 99999887654
No 144
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1e-18 Score=121.78 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=76.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++++++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999999 78999999
Q ss_pred ecC
Q 022077 159 WAS 161 (303)
Q Consensus 159 ~~~ 161 (303)
|+.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 873
No 145
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.8e-18 Score=122.66 Aligned_cols=84 Identities=18% Similarity=0.380 Sum_probs=78.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|+.||.|.++.+..++ +|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998754
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1.2e-19 Score=128.00 Aligned_cols=82 Identities=29% Similarity=0.508 Sum_probs=74.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeeccc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATN 253 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 253 (303)
++|||+||+.++++++|+++|+ .||.|.++++.++..+|+++|||||+|++.+ |.+|+..|||..++|+.|+|.|+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999998 9999999999999988999999999999999 9999999999999999999999988
Q ss_pred CCCC
Q 022077 254 KKTV 257 (303)
Q Consensus 254 ~~~~ 257 (303)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 147
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=1.5e-18 Score=148.52 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHH----HHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 244 (303)
+..+.++|||+||+.++++++|+ ++|+ .||.|.+|++.+ +++++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 45668999999999999999976 8998 999999999876 578899999999999999999999999999999
Q ss_pred eeEEeecccCCC
Q 022077 245 PMRIGPATNKKT 256 (303)
Q Consensus 245 ~l~v~~~~~~~~ 256 (303)
.|+|.|++.+..
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999977653
No 148
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=4.5e-19 Score=124.94 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=71.7
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcC--CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
.+|||+||++++|+++|+++|+.|| .|.++++++++.+|+++|||||+|.+.++|.+|++.|||..+ .|+.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999999 788999998
Q ss_pred cCCC
Q 022077 160 ASFG 163 (303)
Q Consensus 160 ~~~~ 163 (303)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 8644
No 149
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=124.20 Aligned_cols=84 Identities=44% Similarity=0.848 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCce-EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce--
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV-AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN-- 154 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~-- 154 (303)
....++|||+|||.++++++|+++|++||.|. ++++++++.+++++|||||+|.+.++|++|++.|+|..+ .++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCcc
Confidence 35678999999999999999999999999999 999999999999999999999999999999999999999 5555
Q ss_pred --eEeeecCCC
Q 022077 155 --FRLNWASFG 163 (303)
Q Consensus 155 --i~v~~~~~~ 163 (303)
++|.|+...
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998754
No 150
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.7e-18 Score=120.00 Aligned_cols=81 Identities=28% Similarity=0.555 Sum_probs=76.5
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
+.+|||+|||.++++++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|.|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 36899999999999999999999999999999999988999999999999999999999999999999 7899999998
Q ss_pred CCC
Q 022077 161 SFG 163 (303)
Q Consensus 161 ~~~ 163 (303)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 743
No 151
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=121.70 Aligned_cols=76 Identities=26% Similarity=0.414 Sum_probs=73.1
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
++|||+|||.++++++|+++|+ .||.|.++.+..++.+|+++|||||+|.+.++|.+|+..++ ..++|+.|+|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999998 99999999999998889999999999999999999999999 9999999999987
No 152
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=122.78 Aligned_cols=82 Identities=21% Similarity=0.393 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++++++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEEE
Confidence 34668999999999999999999999999999999999998899999999999999999999999999999 7899999
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 153
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=7e-19 Score=126.43 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=76.8
Q ss_pred CCCcceEEEcCCCc------cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCC
Q 022077 78 PGEIRTLWIGDLQY------WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNG 151 (303)
Q Consensus 78 ~~~~~~l~v~nLp~------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~ 151 (303)
....++|||+|||. ++++++|+++|++||.|.++.+++++.||+++|||||+|.+.++|.+|++.|||..+ .
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~ 80 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--D 80 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--C
Confidence 34568999999999 999999999999999999999999999999999999999999999999999999999 6
Q ss_pred C-ceeEeeecC
Q 022077 152 E-QNFRLNWAS 161 (303)
Q Consensus 152 ~-~~i~v~~~~ 161 (303)
+ +.|+|.++.
T Consensus 81 g~r~l~V~~a~ 91 (100)
T 3ns6_A 81 LKHRLFLYTMK 91 (100)
T ss_dssp SSCBCEEEESH
T ss_pred CCeEEEEEECc
Confidence 6 899999875
No 154
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=124.58 Aligned_cols=87 Identities=20% Similarity=0.375 Sum_probs=80.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC------CCCCCC
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN------GTPMPN 150 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------g~~~~~ 150 (303)
.....++|||+|||.++|+++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.|+ |..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 34567899999999999999999999999999999999999899999999999999999999999999 8888
Q ss_pred CCceeEeeecCCCCC
Q 022077 151 GEQNFRLNWASFGAG 165 (303)
Q Consensus 151 ~~~~i~v~~~~~~~~ 165 (303)
.++.|+|.|+.....
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 789999999875533
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.9e-18 Score=129.87 Aligned_cols=86 Identities=19% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+||+.++|+++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999999999 78999
Q ss_pred EeeecCCC
Q 022077 156 RLNWASFG 163 (303)
Q Consensus 156 ~v~~~~~~ 163 (303)
+|.|+...
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998643
No 156
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=4.2e-18 Score=123.77 Aligned_cols=89 Identities=19% Similarity=0.374 Sum_probs=80.3
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCCCCcee
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQNF 155 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~i 155 (303)
.....++|||+||+.++|+++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++.|+|.. +.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999987 45568999
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.|+.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999976543
No 157
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=124.77 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 998643
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.77 E-value=1.5e-18 Score=143.97 Aligned_cols=128 Identities=18% Similarity=0.248 Sum_probs=95.6
Q ss_pred CCCCCceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
....+++|||+||+. ++++++|+++|+ .||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 346678999999999 999999999998 99999999998874 78999999999999999999999999999999
Q ss_pred EeecccCCCCCCcc----ccCCC--------CccCccc-cccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 248 IGPATNKKTVSGQQ----QYPKA--------SYQNSQV-AQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 248 v~~~~~~~~~~~~~----~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
|.|++.+....... ..... .+..... ......+.+++|||+|+. +++ ++|.++|.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~ 173 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS 173 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 99998663221110 00000 0000000 011123346899999776 677 88888773
No 159
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=126.75 Aligned_cols=85 Identities=15% Similarity=0.391 Sum_probs=78.5
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee------
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC------ 241 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~------ 241 (303)
......++|||+||+.++++++|+++|+ .||.|.+++|+.+. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445678999999999999999999998 99999999999998 899999999999999999999999999999
Q ss_pred --CCeeeEEeecccC
Q 022077 242 --STRPMRIGPATNK 254 (303)
Q Consensus 242 --~g~~l~v~~~~~~ 254 (303)
.++.|+|.|++++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 6788999999864
No 160
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=123.47 Aligned_cols=86 Identities=22% Similarity=0.490 Sum_probs=79.5
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999 7889999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99876543
No 161
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=125.66 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=81.2
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
++|||+|||.++|+++|+++|++||.|.++.+.++ ++|||||+|.+.++|.+|++.|+|..+ .++.++|.|+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 58999999999999999999999999999999886 568999999999999999999999998 78889999987
Q ss_pred CCCCCCC------CCCCCceEEEcCCC
Q 022077 162 FGAGEKR------DDTPDHTIFVGDLA 182 (303)
Q Consensus 162 ~~~~~~~------~~~~~~~l~v~nl~ 182 (303)
....... ......+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 6543321 12336789999996
No 162
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.3e-18 Score=121.84 Aligned_cols=86 Identities=21% Similarity=0.372 Sum_probs=78.8
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+||+.++|+++|+++|+.||.|.++.+..+ +++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEE
Confidence 34567899999999999999999999999999999999998 789999999999999999999999999999 78999
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.|+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999876543
No 163
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-19 Score=130.19 Aligned_cols=86 Identities=16% Similarity=0.349 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.. .++.+..+++++|||||+|++.++|.+|++ |||..+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34578999999999999999999998 9999998 677777788999999999999999999998 99999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+..+.
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 999876553
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=128.89 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCc-ceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPST-KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.....++|||+||+.++++++|+++|+ .||.| .+|+|+.+. +|+++|||||+|++.++|.+|+.. |+..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345678999999999999999999998 99999 899999998 899999999999999999999987 99999999999
Q ss_pred EeecccCCC
Q 022077 248 IGPATNKKT 256 (303)
Q Consensus 248 v~~~~~~~~ 256 (303)
|.++..+..
T Consensus 88 v~~a~~~~~ 96 (114)
T 2cpy_A 88 VHVVTLEDM 96 (114)
T ss_dssp EEEECHHHH
T ss_pred EEECCHHHH
Confidence 999988763
No 165
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.9e-18 Score=123.29 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=77.0
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
+++|||+||+.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.++|.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEc
Confidence 57999999999999999999999999999999999998999999999999999999999999999999 7899999998
Q ss_pred CCC
Q 022077 161 SFG 163 (303)
Q Consensus 161 ~~~ 163 (303)
...
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 166
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=122.50 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC--CeeeE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS--TRPMR 247 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 247 (303)
..+.++|||+||+.++++++|+++|+ .||.|+++.+..+ +|||||+|++.++|.+|++.|||..+. |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 45668999999999999999999998 9999999988754 789999999999999999999999999 99999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++++...
T Consensus 87 V~~a~~~~~~ 96 (97)
T 1why_A 87 VDFAKSGPSS 96 (97)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999987653
No 167
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=131.90 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|++++|+.++.+++++|||||+|++.++|.+|++.|||..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456688999999999999999999998 999999999999988999999999999999999999999999999999999
Q ss_pred Eeec
Q 022077 248 IGPA 251 (303)
Q Consensus 248 v~~~ 251 (303)
|.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 168
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=125.57 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=80.5
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCce--------EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--------AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP 147 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 147 (303)
......++|||+||+.++|+++|+++|+.||.|. .+++..++.+++++|||||+|.+.++|.+|++.|+|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456779999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred CCCCCceeEeeecCCCCC
Q 022077 148 MPNGEQNFRLNWASFGAG 165 (303)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~ 165 (303)
+ .++.|+|.|+.....
T Consensus 90 ~--~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 F--QGSKLKVSLARKKPP 105 (113)
T ss_dssp E--TTEECEEECSSCCCC
T ss_pred c--CCCEEEEEECCCCCC
Confidence 9 789999999876543
No 169
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=2.2e-18 Score=127.60 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCC---cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
....++|||+||++++++++|+++|+ .||. |.+|+|+.+.. |+++|||||+|++.++|.+|+. |||..|+|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 45578999999999999999999998 9999 89999999985 9999999999999999999999 99999999999
Q ss_pred EEeecccCC
Q 022077 247 RIGPATNKK 255 (303)
Q Consensus 247 ~v~~~~~~~ 255 (303)
+|.++..++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=1.2e-18 Score=131.61 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCC---cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
.....++|||+||++++++++|+++|+ .||. |.+|+|++++. |+++|||||+|++.++|.+|+. |||..|+|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 345678999999999999999999998 9999 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEeecccCC
Q 022077 246 MRIGPATNKK 255 (303)
Q Consensus 246 l~v~~~~~~~ 255 (303)
|+|.++..+.
T Consensus 117 i~V~~a~~~e 126 (136)
T 2hgl_A 117 IEVFKSHRTE 126 (136)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECChHH
Confidence 9999987654
No 171
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=125.06 Aligned_cols=84 Identities=24% Similarity=0.435 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.++.+..++ +|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999 7889999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9987554
No 172
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=123.00 Aligned_cols=85 Identities=25% Similarity=0.474 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEE-EEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+|||.++|+++|+++|+.||.|.++ ++.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 456899999999999999999999999999999 9999988999999999999999999999999999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99876543
No 173
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=126.01 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCccc------CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 169 DDTPDHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~------~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
.....++|||+||+..+ ++++|+++|+ .||.|.+|.|.+ .+|+++|||||+|.+.++|.+|+..|||..++
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34457899999999999 7899999998 999999999883 47899999999999999999999999999999
Q ss_pred Ce-eeEEeecccCC
Q 022077 243 TR-PMRIGPATNKK 255 (303)
Q Consensus 243 g~-~l~v~~~~~~~ 255 (303)
|+ .|+|.|+....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999998654
No 174
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=123.62 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=76.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.| +++.+ .+++++|||||+|++.++|.+|+..|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456689999999999999999999998 89977 56666 5788999999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++.+...
T Consensus 85 v~~a~~~~~~ 94 (101)
T 2fc9_A 85 LELQGPRGSP 94 (101)
T ss_dssp EEECSSCCCC
T ss_pred EEEcCCCCCC
Confidence 9999987654
No 175
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=125.31 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||++++++++|+++|+ .|| +++|+|++++ +++++|||||+|++.++|.+|+. +|+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45568999999999999999999998 999 5599999998 89999999999999999999995 79999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
++......
T Consensus 88 ~~~~~~~~ 95 (102)
T 1wez_A 88 LNSTAGTS 95 (102)
T ss_dssp EECCCCCC
T ss_pred ECCCCCCC
Confidence 98876543
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=3.5e-18 Score=131.78 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=79.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC--eeeEEe
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST--RPMRIG 249 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 249 (303)
...+|||+||++.+++++|+++|+ +||.|++|+|..+ .++|||||+|++.++|.+|++.|||..|.| +.|+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345789999999999999999998 9999999998654 247899999999999999999999999965 999999
Q ss_pred ecccCCCCCCccccCCCCccCccc
Q 022077 250 PATNKKTVSGQQQYPKASYQNSQV 273 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~ 273 (303)
|++.+...-....++...|++...
T Consensus 120 ~Ak~~~l~vk~nn~rsrDyt~p~l 143 (164)
T 1sjr_A 120 FSKLTSLNVKYNNDKSRDYTRPDL 143 (164)
T ss_dssp ECSSSSCCCCCCSSSEEESSCSCC
T ss_pred EecCCcccccccCCCCccccCCCC
Confidence 999986554443333444555443
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=3.3e-19 Score=140.38 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=92.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
++++|||+|||.++++++|+++|+ .||.|.+++++++..+|+++|||||+|.+.++|.+|+. ++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 357999999999999999999998 99999999999998899999999999999999999998 467899999999988
Q ss_pred ccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 252 TNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
..+... ..+++|||+++. ++| ++|.++|.
T Consensus 79 ~~~~~~----------------------~~~~~l~V~nlp~~~t~~~l~~~F~ 109 (167)
T 2cjk_A 79 IPRDEQ----------------------DKTGKIFVGGIGPDVRPKEFEEFFS 109 (167)
T ss_dssp CCHHHH----------------------HHCEEEEEEEECTTCCHHHHHHHHH
T ss_pred cchhhc----------------------cCCCeEEECCCCCCCCHHHHHHHHH
Confidence 765321 124689999777 688 88888773
No 178
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=120.00 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|+++++. +|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999998 99999999987 5799999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876553
No 179
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=122.17 Aligned_cols=85 Identities=18% Similarity=0.376 Sum_probs=77.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCC---CCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQ---TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
.+.++|||+||+.++|+++|+++|+.||.|.++.+.+++. +++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4568999999999999999999999999999999999876 668999999999999999999999999999 78999
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.|+.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=3.5e-19 Score=141.42 Aligned_cols=111 Identities=17% Similarity=0.320 Sum_probs=92.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+|||.++++++|+++|+ .||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 445678999999999999999999998 9998877 33444457888999999999999999999 59999999999999
Q ss_pred eecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 249 GPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
.|+..+..... ..+++|||+|+. ++| ++|.++|.
T Consensus 86 ~~~~~~~~~~~--------------------~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 86 EKPKGRDSKKV--------------------RAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp ECCCCSSCSTT--------------------GGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred ecCCCcccccc--------------------ccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 99987653321 245799999776 788 88888873
No 181
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=123.29 Aligned_cols=83 Identities=23% Similarity=0.423 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|.++++.++ +|||||+|++.++|.+|++.|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 4456678999999999999999999998 9999999999754 78999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++.+...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpj_A 83 VRFACHSASL 92 (99)
T ss_dssp EEESSCCSCC
T ss_pred EEEcCCCCCC
Confidence 9999987644
No 182
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=124.10 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++|+++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999999 78999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9876543
No 183
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.3e-18 Score=124.06 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.++++. +++|||||+|++.++|.+|+..|||..++|+.|+|.|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4468999999999999999999998 99999999997 3478999999999999999999999999999999999
Q ss_pred cccC
Q 022077 251 ATNK 254 (303)
Q Consensus 251 ~~~~ 254 (303)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 184
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=7.1e-18 Score=125.34 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=77.9
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeE-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEe
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY-GFVRFGDESEQLRAMTEMNGVFCST--RPMRIG 249 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~ 249 (303)
...|||+||++.+++++|+++|+ +||.|.+|++..+. +|+ |||+|++.++|.+|++.|||..|.| +.|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 35678999999999999999998 99999999887653 577 9999999999999999999999988 999999
Q ss_pred ecccCCCCCCccccCCCCccCc
Q 022077 250 PATNKKTVSGQQQYPKASYQNS 271 (303)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ 271 (303)
|++.+...-....+....|++.
T Consensus 102 ~ak~~~l~v~~n~~~srDyt~~ 123 (130)
T 3zzy_A 102 FSKLTSLNVKYNNDKSRDYTRP 123 (130)
T ss_dssp ECSCSSCCCCCCSSSEEETTCT
T ss_pred ecCCCceeEEecCCCcccCCCC
Confidence 9999876554443333444443
No 185
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=124.01 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce-EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG-AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.....++|||+||++++++++|+++|+ .||.|.+ ++|+.+ .+|+++|||||+|++.++|.+|+.. |+..++|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 345678999999999999999999998 9999997 888888 6899999999999999999999997 99999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.++..+...
T Consensus 88 v~~~~~~~~~ 97 (104)
T 1wg5_A 88 IFKSSRAEVR 97 (104)
T ss_dssp EEEECTTTSC
T ss_pred EEECCHHHHH
Confidence 9998766543
No 186
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-18 Score=121.72 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhh-cCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCC-CCCCCce
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAH-TGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTP-MPNGEQN 154 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~ 154 (303)
+....++|||+||+.++|+++|+++|+. ||.|.++.+++++ +|+++|||||+|.+.++|.+|++.|+|.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 3456789999999999999999999999 9999999999999 89999999999999999999999999999 8 7888
Q ss_pred eEeeecCCCC
Q 022077 155 FRLNWASFGA 164 (303)
Q Consensus 155 i~v~~~~~~~ 164 (303)
|+|.|+....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999986543
No 187
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=128.77 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCcccCHHHHH----HHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
..++++|||+||+..+++++|+ ++|+ +||.|.+|.+.. +++++|||||+|++.++|.+|+..|||..+.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 4567899999999999999876 6998 999999987753 5788999999999999999999999999999999
Q ss_pred eEEeecccCCCC
Q 022077 246 MRIGPATNKKTV 257 (303)
Q Consensus 246 l~v~~~~~~~~~ 257 (303)
|+|.|++.+...
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999987543
No 188
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.4e-19 Score=130.93 Aligned_cols=84 Identities=17% Similarity=0.346 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||++++++++|+++|+ .||.|.++.++.+..+|+++|||||+|++.++|.+|+. |||..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45668999999999999999999998 99999997777777799999999999999999999999 99999999999999
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 189
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.1e-17 Score=120.83 Aligned_cols=84 Identities=20% Similarity=0.449 Sum_probs=77.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++++++|+++|+.|| |.++.+++++.+++++|||||+|.+.++|.+|+ .|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEEE
Confidence 35678999999999999999999999997 999999999999999999999999999999999 8999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99875533
No 190
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=124.52 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.+|+|+.+ +|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45578999999999999999999998 9999999999866 7899999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+....
T Consensus 95 ~a~~~~~~~ 103 (109)
T 1x4g_A 95 WGKESPDMT 103 (109)
T ss_dssp CCCCCCSSC
T ss_pred ecCCCCCCC
Confidence 999876553
No 191
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=125.62 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecC-CCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNK-QTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
....++|||+||+.++++++|+++|+.|| |.++.+.+++ .+|+++|||||+|.+.++|.+|+ .|+|..+ .++.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEE
Confidence 35668999999999999999999999999 9999999998 68999999999999999999999 8999999 788899
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.++...
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9988643
No 192
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=127.83 Aligned_cols=88 Identities=26% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
..+.++|||+||+.++++++|+++|+ .||.|..+.+..+..+++++|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999998 99999655444333378899999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q 022077 250 PATNKKTVS 258 (303)
Q Consensus 250 ~~~~~~~~~ 258 (303)
|++.+....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999887653
No 193
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-17 Score=120.07 Aligned_cols=86 Identities=26% Similarity=0.488 Sum_probs=77.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.+|.+.+++. .++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEE
Confidence 445678999999999999999999999999999999999864 3689999999999999999999999999 789999
Q ss_pred eeecCCCCCC
Q 022077 157 LNWASFGAGE 166 (303)
Q Consensus 157 v~~~~~~~~~ 166 (303)
|.|+......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999865443
No 194
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=9.9e-18 Score=121.13 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|.+++++ ++||||+|++.++|.+|+..|||..|+|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 45678999999999999999999998 99999999886 4599999999999999999999999999999999
Q ss_pred ecccCCCCCC
Q 022077 250 PATNKKTVSG 259 (303)
Q Consensus 250 ~~~~~~~~~~ 259 (303)
|++.+.....
T Consensus 79 ~a~~~~~~~~ 88 (103)
T 2dgu_A 79 FAKPPDQKRK 88 (103)
T ss_dssp ECCCCCCCCC
T ss_pred EcCCCcccch
Confidence 9998776544
No 195
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.8e-19 Score=121.84 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=75.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 78888888
Q ss_pred ecC
Q 022077 159 WAS 161 (303)
Q Consensus 159 ~~~ 161 (303)
|+.
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 196
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.1e-18 Score=124.72 Aligned_cols=84 Identities=19% Similarity=0.359 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|+.||.|.++.+..++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998644
No 197
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=121.78 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC-----e
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST-----R 244 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 244 (303)
....++|||+||+.++++++|+++|+ .||.|++|+|+.+ |||||+|++.++|.+|++.|||..|.| +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 34578999999999999999999998 9999999999865 799999999999999999999999999 9
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.+++++....
T Consensus 84 ~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 84 YIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEESSCCSCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999999876543
No 198
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=127.15 Aligned_cols=82 Identities=16% Similarity=0.300 Sum_probs=76.8
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|+ .|+|..| .++.|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 97 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPII 97 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999 9999999 789999
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.|+.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 99875
No 199
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=120.28 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|. +.++.+ +++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45578999999999999999999998 999997 677755 568999999999999999999999999999999999
Q ss_pred ecccCCC
Q 022077 250 PATNKKT 256 (303)
Q Consensus 250 ~~~~~~~ 256 (303)
|+++++.
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9988753
No 200
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=122.21 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V 89 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKL 89 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 34568999999999999999999999999999888899888999999999999999999999999999999 7899999
Q ss_pred eecCC
Q 022077 158 NWASF 162 (303)
Q Consensus 158 ~~~~~ 162 (303)
.++..
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99864
No 201
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.5e-18 Score=143.47 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=77.3
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCC--CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYP--STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
..++|||+||+.++++++|+++|+ .|| .|++|+|++|+.+++++|||||+|++.++|.+||..|||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999998 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 022077 250 PATNK 254 (303)
Q Consensus 250 ~~~~~ 254 (303)
|++.+
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98764
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=139.24 Aligned_cols=123 Identities=19% Similarity=0.256 Sum_probs=92.3
Q ss_pred CceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 173 DHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 173 ~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
+++|||+||+. ++++++|+++|+ .||.|.+|+++.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57999999999 999999999998 99999999998774 789999999999999999999999999999999999
Q ss_pred ccCCCCCCccc----cCCCCcc--------Cccc-cccCCCCCCcEEEEeeec-ccC-ccccccc
Q 022077 252 TNKKTVSGQQQ----YPKASYQ--------NSQV-AQSDDDPNNTTVSTVVIF-NIK-NPVFQTF 301 (303)
Q Consensus 252 ~~~~~~~~~~~----~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f 301 (303)
+.+........ .....+. .... ......+.+++|||+|+. +++ ++|.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 141 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF 141 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH
Confidence 87642211110 0000000 0000 011112346899999776 677 8888877
No 203
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=120.39 Aligned_cols=82 Identities=21% Similarity=0.412 Sum_probs=76.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++++++|+++|+.||.|.++.+.+++. ++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 345678999999999999999999999999999999999985 89999999999999999999999999999 789999
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.|+.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 99876
No 204
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=125.79 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCcc-cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCeee
Q 022077 170 DTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG--VFCSTRPM 246 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l 246 (303)
..++++|||+||+++ +++++|+++|+ .||.|.+|+|++. +|||||+|++.++|.+|++.|++ ..|.|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 556889999999998 99999999998 9999999999743 78999999999999999998864 56999999
Q ss_pred EEeecccCCCC
Q 022077 247 RIGPATNKKTV 257 (303)
Q Consensus 247 ~v~~~~~~~~~ 257 (303)
+|.|++.+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999877654
No 205
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=124.00 Aligned_cols=83 Identities=25% Similarity=0.565 Sum_probs=78.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++++++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999999 78899999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|+...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 98754
No 206
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=118.00 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=71.9
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCeee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM-NGVFCSTRPM 246 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l 246 (303)
......++|||+||+.++++++|+++|+ .||.|.++++..+ +|||||+|++.++|.+|+..| +|..++|+.|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 3445678999999999999999999998 9999999999864 789999999999999999999 9999999999
Q ss_pred EEeecc
Q 022077 247 RIGPAT 252 (303)
Q Consensus 247 ~v~~~~ 252 (303)
+|.|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 207
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4e-18 Score=124.44 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=73.6
Q ss_pred CCCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 75 QGQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 75 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
.......++|||+||+.++|+++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.+ +..+ .|+.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~ 95 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKT 95 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEE
Confidence 344567799999999999999999999999999999999999989999999999999999999999875 5667 7899
Q ss_pred eEeeecCCC
Q 022077 155 FRLNWASFG 163 (303)
Q Consensus 155 i~v~~~~~~ 163 (303)
|+|.++...
T Consensus 96 l~V~~a~~~ 104 (109)
T 2rs2_A 96 IDPKVAFPR 104 (109)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999998754
No 208
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=6.1e-18 Score=123.18 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=73.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|+++.+. +|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4456778999999999999999999998 99999999987 68999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++.+..+
T Consensus 97 V~~a~~~~~r 106 (108)
T 2jvo_A 97 VVYSKLPAKR 106 (108)
T ss_dssp EESCSCCC--
T ss_pred EEEecCCCCC
Confidence 9999887543
No 209
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=117.93 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.++.+. ++||||+|++.++|.+|+..|||..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 445678999999999999999999998 99999999986 349999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.+...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999887654
No 210
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=122.90 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=77.9
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|++||.|.++++++++.+++++|||||+|.+.++|.+|++.+++ .+ .++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEEE
Confidence 445678999999999999999999999999999999999998999999999999999999999999998 67 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9998754
No 211
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=127.93 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceE--EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCC----CCCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT----PMPNG 151 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~----~~~~~ 151 (303)
....++|||+||++++|+++|+++|++||.|.. |++++++.+|+++|||||+|.+. +|.+|++.|+|. .+ .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--D 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--G
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--C
Confidence 356689999999999999999999999999976 99999999999999999999999 999999999999 77 7
Q ss_pred CceeEeeecCCC
Q 022077 152 EQNFRLNWASFG 163 (303)
Q Consensus 152 ~~~i~v~~~~~~ 163 (303)
++.|+|.|+...
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 889999998754
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=120.88 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC--CCCCCCCce
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQN 154 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~ 154 (303)
++...++|||+|||+++|+++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.|++ ..+ .|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEE
Confidence 3456789999999999999999999999999999999875 47999999999999999998875 456 7899
Q ss_pred eEeeecCCCCC
Q 022077 155 FRLNWASFGAG 165 (303)
Q Consensus 155 i~v~~~~~~~~ 165 (303)
|+|.|+.....
T Consensus 84 l~V~~A~~~~~ 94 (105)
T 1sjq_A 84 IYIQFSNHKEL 94 (105)
T ss_dssp CCBCCCSSSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 213
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.3e-18 Score=121.81 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=73.7
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|+.||.|.+|.+.+++. |+++|||||+|.+.++|.+|+. ++|..+ .|+.|+|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEE
Confidence 45678999999999999999999999999999999999986 9999999999999999999998 899988 7788888
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
.|+.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 8764
No 214
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=120.49 Aligned_cols=83 Identities=22% Similarity=0.419 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCC-CCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+||+.++|+++|+++|+.|| |.++.+++++.+ ++++|||||+|.+.++|.+|+ .|++..+ .++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 9999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.++.....
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 215
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.7e-19 Score=133.87 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=75.6
Q ss_pred cEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce
Q 022077 124 GYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG 203 (303)
Q Consensus 124 g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~ 203 (303)
|+||.+|...+.+..++....... +.+ ...-.. ............++|||+||++++++++|+++|+ .|| |++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--gg~-~~g~~~--g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~~ 74 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT--GGQ-QMGRGS--GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PVR 74 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CSE
T ss_pred CcccccccCccccchhcccchhcc--CCC-CCCCCC--CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-CeE
Confidence 467777777666655554433221 111 110010 0111123345678999999999999999999998 999 779
Q ss_pred EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 204 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 204 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
|+|++++. ++++|||||+|++.++|++|+ .+|+..|+|+.|+|.++..+...
T Consensus 75 v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 75 VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 99999975 999999999999999999999 78999999999999998877644
No 216
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=7.1e-18 Score=117.97 Aligned_cols=81 Identities=25% Similarity=0.415 Sum_probs=74.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++ +++..+ .|+.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999996 577777 788888
Q ss_pred eeec
Q 022077 157 LNWA 160 (303)
Q Consensus 157 v~~~ 160 (303)
|.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8875
No 217
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-17 Score=118.44 Aligned_cols=85 Identities=21% Similarity=0.434 Sum_probs=77.0
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|+.||.|.++.+.+++. .++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKIE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 445679999999999999999999999999999999999864 3889999999999999999999999999 789999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999876543
No 218
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=120.06 Aligned_cols=74 Identities=18% Similarity=0.347 Sum_probs=68.1
Q ss_pred CceEEEcCCCccc------CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe-e
Q 022077 173 DHTIFVGDLAADV------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR-P 245 (303)
Q Consensus 173 ~~~l~v~nl~~~~------~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~ 245 (303)
+++|||+|||..+ ++++|+++|+ .||.|.++++.. .+|+++|||||+|.+.++|.+|+..|||..++|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7799999998 999999999873 4789999999999999999999999999999999 8
Q ss_pred eEEe
Q 022077 246 MRIG 249 (303)
Q Consensus 246 l~v~ 249 (303)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8773
No 219
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=1.4e-18 Score=140.57 Aligned_cols=121 Identities=13% Similarity=0.270 Sum_probs=88.7
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCC-----------cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPS-----------TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-----------i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
..++|||+|||.++++++|+++|+ .||. |.++.+ ++++|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 468999999999999999999998 9953 443433 456899999999999999999 899999
Q ss_pred eCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 241 CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 241 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
+.|+.|+|.++..+........... ...............++|||+++. +++ ++|.++|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPS--VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSS--CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCc--CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 9999999999887654332211111 111111122233456899999776 788 88888773
No 220
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=117.73 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
.....++|||+||+.++++++|+++|+ .||.|.++++. ++||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999998 99999999986 348999999999999999999999999999999
Q ss_pred eecccCCCC
Q 022077 249 GPATNKKTV 257 (303)
Q Consensus 249 ~~~~~~~~~ 257 (303)
.|++.+...
T Consensus 76 ~~a~~~~~~ 84 (90)
T 2dnp_A 76 ELSTKGQKK 84 (90)
T ss_dssp EESCCCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 221
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.1e-17 Score=119.50 Aligned_cols=78 Identities=14% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 169 DDTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.....++|||+||+. ++++++|+++|+ .||.|.++++. +|||||+|++.++|.+|+..|||..++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345678999999998 999999999998 99999999882 78999999999999999999999999999999
Q ss_pred EeecccCC
Q 022077 248 IGPATNKK 255 (303)
Q Consensus 248 v~~~~~~~ 255 (303)
|.|++.+.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998754
No 222
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.9e-17 Score=117.02 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++++++|+++|++||.|.++.+.++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 46689999999999999999999999999999999984 789999999999999999999999999999 78899999
Q ss_pred ecCCCC
Q 022077 159 WASFGA 164 (303)
Q Consensus 159 ~~~~~~ 164 (303)
|+....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987543
No 223
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=4.5e-18 Score=125.49 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...+++|||+||+.++++++|+++|+ .||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999998 9999999999876 4558999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
|+..+...
T Consensus 81 ~a~~~~~~ 88 (115)
T 3lqv_A 81 YYNANRAF 88 (115)
T ss_dssp ECCHHHHT
T ss_pred EecCChhh
Confidence 99876544
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=123.77 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=73.0
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
..+|||+||++++++++|+++|+ .| .|.+|+|+.++. |+++|||||+|++.++|.+|+ .||+..|+||.|+|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 47899999999999999999998 89 899999999974 999999999999999999999 689999999999999887
Q ss_pred cC
Q 022077 253 NK 254 (303)
Q Consensus 253 ~~ 254 (303)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 225
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.1e-18 Score=118.56 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=71.5
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
+|||+||+.++++++|+++|+ .||.|.++.+..++.++.++|||||+|++.++|.+|++. ++..++|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999998 999999999999988899999999999999999999985 899999999999885
No 226
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.74 E-value=5.9e-18 Score=143.10 Aligned_cols=109 Identities=26% Similarity=0.423 Sum_probs=91.9
Q ss_pred ecCCCCCCCCCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 159 WASFGAGEKRDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
+..............++|||+||+.++++++|+++|+ .||.|.+|.+.++ +|||||+|.+.++|.+|+..|||
T Consensus 8 ~~~~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g 80 (261)
T 3sde_A 8 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDG 80 (261)
T ss_dssp CCCCCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTT
T ss_pred ccccCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCC
Confidence 3333333334456678999999999999999999998 9999999999643 78999999999999999999999
Q ss_pred ceeCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 239 VFCSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 239 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
..+.|+.|+|.|+.. +++|||+|+. ++| ++|.++|.
T Consensus 81 ~~i~g~~l~v~~a~~----------------------------~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 81 TILKSRPLRIRFATH----------------------------GAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp CEETTEECEEEECCC----------------------------SSEEEEESCCTTCCHHHHHHHHG
T ss_pred cEECCceeEeeeccc----------------------------CCcccccCCCCCCCHHHHHHHHH
Confidence 999999999999863 3689999766 677 88888773
No 227
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=121.56 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+||+.++++++|+++|+ .||.|..+ . .++.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE---E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe---C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445678999999999999999999998 99988766 2 3688899999999999999999999999999999999
Q ss_pred EeecccCCCC
Q 022077 248 IGPATNKKTV 257 (303)
Q Consensus 248 v~~~~~~~~~ 257 (303)
|.|++++...
T Consensus 85 v~~a~~~~~~ 94 (96)
T 1fjc_A 85 LYYTGEKGGT 94 (96)
T ss_dssp EEECSSSCCC
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=6.6e-18 Score=118.65 Aligned_cols=80 Identities=19% Similarity=0.421 Sum_probs=75.9
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|+ .|+|..+ .++.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4689999999999999999999999999999999999989999999999999999999999 9999999 789999999
Q ss_pred cCC
Q 022077 160 ASF 162 (303)
Q Consensus 160 ~~~ 162 (303)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 864
No 229
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.1e-17 Score=121.76 Aligned_cols=81 Identities=17% Similarity=0.357 Sum_probs=76.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+..+|+++|+++|+.||.|.++.+.+++ +|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 102 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMNI 102 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 3567899999999999999999999999999999999999 899999999999999999999999999999 7899999
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 230
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.2e-17 Score=122.19 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCceeEeeecCCCCCCCCCCCCCceEEEcCCCcc-cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHH
Q 022077 151 GEQNFRLNWASFGAGEKRDDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQ 229 (303)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 229 (303)
.+..+++..+..... .......++|||+||+.+ +++++|+++|+ .||.|++|.+ ++|||||+|++.++|
T Consensus 6 ~g~~~~~~~s~~~~~-~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK-NDPKSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCS-CCCTTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCC-CCCCCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 344555555443222 123345689999999999 99999999998 9999999998 378999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 230 LRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 230 ~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
.+|+..|||..++|+.|+|.|++.++..
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred HHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999865543
No 231
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=117.97 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhC--CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARY--PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
......++|||+||+.++++++|+++|+ .| |.|.++++. +|||||+|.+.++|.+|+..|||..++|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999998 99 899988764 679999999999999999999999999999
Q ss_pred eEEeecccCCCC
Q 022077 246 MRIGPATNKKTV 257 (303)
Q Consensus 246 l~v~~~~~~~~~ 257 (303)
|+|.|++++...
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999987643
No 232
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=120.55 Aligned_cols=85 Identities=25% Similarity=0.438 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++. ++..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEE
Confidence 456779999999999999999999999999999999999998999999999999999999999988 99988 789999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99987553
No 233
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=125.88 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCC---cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPS---TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
.....++|||+||++++++++|+++|+ .||. |.+|+|+.+.. |+++|||||+|.+.++|.+|+. ||+..++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345678999999999999999999998 9888 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEeecccCC
Q 022077 246 MRIGPATNKK 255 (303)
Q Consensus 246 l~v~~~~~~~ 255 (303)
|+|.++..++
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999998765
No 234
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=119.88 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEE
Confidence 3457899999999999999999999999999999999998 599999999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998654
No 235
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.5e-18 Score=123.41 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCC-CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYP-STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...++|||+||++++++++|+++|+ .|| .|..+.|..+ +++|||||+|++.++|++|++.|||..++|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3467999999999999999999998 999 8999988533 468999999999999999999999999999999999
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
+++...
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987653
No 236
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=3.5e-18 Score=122.15 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCcccCHHHHH----HHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQ----ETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
..++++|||+||+.++++++|+ ++|+ .||.|.++.+.. +|.++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 4567899999999999999999 9998 999999998873 4677899999999999999999999999999999
Q ss_pred eEEeecccCCCC
Q 022077 246 MRIGPATNKKTV 257 (303)
Q Consensus 246 l~v~~~~~~~~~ 257 (303)
|+|.|++.+...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999987543
No 237
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=4.5e-18 Score=115.51 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=70.7
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
+|||+|||.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|++|++ ++|..+ .++.++|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999997 899999 7888888875
No 238
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-17 Score=117.39 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=76.5
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++ ++..+ .++.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 46667 789999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999876533
No 239
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-19 Score=133.56 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=81.4
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcce--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKG--------AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
..+.++|||+||+.++++++|+++|+ .||.|.+ ++|+.++.+++++|||||+|.+.++|.+|+..|||..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 35678999999999999999999998 9999999 99999988899999999999999999999999999999
Q ss_pred CCeeeEEeecccCCCC
Q 022077 242 STRPMRIGPATNKKTV 257 (303)
Q Consensus 242 ~g~~l~v~~~~~~~~~ 257 (303)
.|+.|+|.|++.+...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999987654
No 240
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.1e-18 Score=115.29 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=67.7
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
.+..|||+||++.+|+++|+++|.+||.|.++++.. ++|||||+|.+.++|++|++.||+..+ .++.|+|.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 467899999999999999999999999999999865 568999999999999999999999999 788899887
Q ss_pred c
Q 022077 160 A 160 (303)
Q Consensus 160 ~ 160 (303)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 6
No 241
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=117.57 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=75.6
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCC-cccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ-IEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..++|||+||+.++|+++|+++|+.||.|.++.+..++.++. ++|||||+|.+.++|.+|++.|+|..+ .|+.|+|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 468999999999999999999999999999999999887665 899999999999999999999999999 78999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88643
No 242
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=122.75 Aligned_cols=83 Identities=22% Similarity=0.458 Sum_probs=75.6
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|++||.|.++.+.+++ +.++|||||+|.+.++|++|++.|+|..+ .|+.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999885 45899999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998643
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.4e-17 Score=124.86 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999 7889999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 998644
No 244
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-17 Score=118.32 Aligned_cols=83 Identities=14% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|++||.|.++.+..+ ++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 3456789999999999999999999999999999998553 56789999999999999999999999999 789999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987553
No 245
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=117.91 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC-ceeCCeeeE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-VFCSTRPMR 247 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~ 247 (303)
....++|||+||+.++++++|+++|+ .||. |..+.+ . ++|||||+|++.++|.+|+..||| ..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 35678999999999999999999998 9999 666655 2 378999999999999999999999 999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+..+.
T Consensus 77 v~~a~~~~~~~ 87 (93)
T 2cqh_A 77 VDYSVSKKLRS 87 (93)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCccccC
Confidence 99999876553
No 246
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=2.6e-17 Score=123.11 Aligned_cols=84 Identities=17% Similarity=0.313 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++++++|+++|+.||.|.++.+.+++ +|+++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9998754
No 247
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=119.28 Aligned_cols=80 Identities=15% Similarity=0.295 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCc-ccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 022077 170 DTPDHTIFVGDLAA-DVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRI 248 (303)
Q Consensus 170 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 248 (303)
..+.++|||+||+. ++++++|+++|+ .||.|.++.+. +|||||+|++.++|.+|+..|||..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45678999999998 999999999998 99999999983 689999999999999999999999999999999
Q ss_pred eecccCCCCC
Q 022077 249 GPATNKKTVS 258 (303)
Q Consensus 249 ~~~~~~~~~~ 258 (303)
.|++.+....
T Consensus 78 ~~a~~~~~~~ 87 (96)
T 2kvi_A 78 EVSSSNARPQ 87 (96)
T ss_dssp EEEECCCC--
T ss_pred EEcCcCCCCC
Confidence 9998876543
No 248
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.1e-18 Score=130.22 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEE--E---EeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK--V---VIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~--i---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 244 (303)
..++++|||+||+.++++++|+++|+ .||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 45678999999999999999999998 999998751 1 11123688999999999999999999999999999999
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.|++.+..+.
T Consensus 121 ~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 121 PMVVQFARSARPKQ 134 (143)
T ss_dssp ECEEEECCCSCC--
T ss_pred EEEEEECCCCCCcc
Confidence 99999998866543
No 249
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.6e-17 Score=118.39 Aligned_cols=85 Identities=25% Similarity=0.433 Sum_probs=77.0
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC------
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN------ 150 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~------ 150 (303)
.....++|||+|||.++|+++|+++|+.||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|||..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999854
Q ss_pred CCceeEeeecCC
Q 022077 151 GEQNFRLNWASF 162 (303)
Q Consensus 151 ~~~~i~v~~~~~ 162 (303)
.++.++|.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 367788888763
No 250
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=126.20 Aligned_cols=82 Identities=22% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 788999
Q ss_pred eeec
Q 022077 157 LNWA 160 (303)
Q Consensus 157 v~~~ 160 (303)
|.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 251
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.7e-17 Score=121.73 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=70.2
Q ss_pred eEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeE-EEEEeCCHHHHHHHHHHhCCceeCC--eeeEEeec
Q 022077 175 TIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGY-GFVRFGDESEQLRAMTEMNGVFCST--RPMRIGPA 251 (303)
Q Consensus 175 ~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 251 (303)
.|||+||++.+++++|+++|+ +||.|++|+|+. + .|+ |||+|++.++|.+|++.|||..|.| +.|+|.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 467999999999999999998 999999999864 2 275 9999999999999999999999987 68999999
Q ss_pred ccCCCCCCcc
Q 022077 252 TNKKTVSGQQ 261 (303)
Q Consensus 252 ~~~~~~~~~~ 261 (303)
+.+...-...
T Consensus 100 k~~~l~v~~n 109 (124)
T 2e5i_A 100 RPTRLNVIRN 109 (124)
T ss_dssp SCSCCCCSSC
T ss_pred cCCcceeecC
Confidence 9887554433
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=115.44 Aligned_cols=76 Identities=26% Similarity=0.492 Sum_probs=71.3
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
++|||+|||.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.++ ..+ .|+.++|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999888 777 7888888876
No 253
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=6.2e-18 Score=120.33 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=75.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEe
Confidence 358999999999999999999999999999899999988999999999999999999999999999999 789999998
Q ss_pred cC
Q 022077 160 AS 161 (303)
Q Consensus 160 ~~ 161 (303)
++
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 254
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-17 Score=121.32 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=73.1
Q ss_pred ceEEEcCC----CcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCC----HHH----HHHHHH--HhCCc
Q 022077 174 HTIFVGDL----AADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD----ESE----QLRAMT--EMNGV 239 (303)
Q Consensus 174 ~~l~v~nl----~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~ 239 (303)
.+|||+|| ++.+++++|+++|+ .||.|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 99999999999998 99999999999999999999999999996 333 888988 78999
Q ss_pred eeCCeeeEEeecccCC
Q 022077 240 FCSTRPMRIGPATNKK 255 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~~ 255 (303)
.|+|+.|+|.+-+...
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999999876643
No 255
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=117.96 Aligned_cols=81 Identities=11% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEE-EEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAK-VVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~-i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
...++|||+||+.++++++|+++|+ .||.|.+++ |+.++.+ +.|||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4568999999999999999999998 999999994 7777543 339999999999999999999999999999999
Q ss_pred ecccCCC
Q 022077 250 PATNKKT 256 (303)
Q Consensus 250 ~~~~~~~ 256 (303)
|+.++..
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9998843
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=115.35 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||+++|+++|+++|+.| .|.++.++++ .+|+++|||||+|.+.++|.+|++ |+|..+ .++.|+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEE
Confidence 3567899999999999999999999999 8999999999 689999999999999999999999 999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.++...
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998754
No 257
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-17 Score=115.66 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=73.3
Q ss_pred CCCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 168 RDDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 168 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
......++|||+|| ++++++|+++|+ .||.|.+|.|. +++|||||+|++.++|.+|+..|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 33456789999996 899999999998 99999999984 4588999999999999999999999999999999
Q ss_pred EeecccCCCCC
Q 022077 248 IGPATNKKTVS 258 (303)
Q Consensus 248 v~~~~~~~~~~ 258 (303)
|.|++.+....
T Consensus 81 v~~a~~~~~~~ 91 (97)
T 1x5p_A 81 VNIARKQPMLD 91 (97)
T ss_dssp EECCSSCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998876554
No 258
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=4e-18 Score=120.06 Aligned_cols=79 Identities=23% Similarity=0.470 Sum_probs=73.0
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
++|||+||+.++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.+ |.+|++.|+|..+ .|+.++|.|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999989999999999999999 9999999999999 78899999987
Q ss_pred CC
Q 022077 162 FG 163 (303)
Q Consensus 162 ~~ 163 (303)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 259
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=121.57 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=78.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++. ++..+ .++.|+|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999987 88888 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99876543
No 260
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=124.34 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCc----ceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPST----KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i----~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
....+|||+||++++++++|+++|+ .||.| .+|+|+.+. +|+++|||||+|++.++|.+|+.. |+..++||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467999999999999999999998 99975 689999985 899999999999999999999986 9999999999
Q ss_pred EEeecccCC
Q 022077 247 RIGPATNKK 255 (303)
Q Consensus 247 ~v~~~~~~~ 255 (303)
+|..+..+.
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999887654
No 261
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=117.40 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceE-EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA-VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+|||+++|+++|+++|+.||.|.+ +.+..+ .+|+++|||||+|.+.++|.+|++. ++..+ .++.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEEE
Confidence 45689999999999999999999999999987 888888 6899999999999999999999987 99888 7888999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.++...
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 887654
No 262
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=116.69 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=73.8
Q ss_pred CCcceEEEcCCCccCCHHHHH----HHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 79 GEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
...++|||+||++++++++|+ ++|++||.|.++.+..++.+ +|||||+|.+.++|.+|++.|||..+ .++.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~ 81 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSKK 81 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCeE
Confidence 456899999999999999999 99999999999999998754 78999999999999999999999999 7899
Q ss_pred eEeeecCCC
Q 022077 155 FRLNWASFG 163 (303)
Q Consensus 155 i~v~~~~~~ 163 (303)
|+|.|+...
T Consensus 82 l~V~~a~~~ 90 (96)
T 2dgx_A 82 ILVSLATGA 90 (96)
T ss_dssp EEEEECCCS
T ss_pred EEEEEcCCC
Confidence 999998654
No 263
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=115.85 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+| +.+..+++ ||||+|.+.++|.+|+. |||..|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4567999999999999999999998 99999987 55655554 99999999999999999 999999999999999
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
+..+...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8876654
No 264
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=4.8e-17 Score=126.65 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..| .++.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 999754
No 265
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1.5e-17 Score=126.04 Aligned_cols=87 Identities=22% Similarity=0.449 Sum_probs=80.1
Q ss_pred CCCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 76 GQPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 76 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
......++|||+|||.++|+++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 119 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGREL 119 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 78899
Q ss_pred EeeecCCCC
Q 022077 156 RLNWASFGA 164 (303)
Q Consensus 156 ~v~~~~~~~ 164 (303)
+|.|+....
T Consensus 120 ~V~~a~~~~ 128 (135)
T 2lea_A 120 RVQMARYGR 128 (135)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999987543
No 266
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=122.50 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=71.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||+||+.++++++|+++|+ .||.|.+|.|.. ++|||||+|.+.++|.+|+..|||..++|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357999999999999999999998 999999998864 4789999999999999999999999999999999999
Q ss_pred ccCCC
Q 022077 252 TNKKT 256 (303)
Q Consensus 252 ~~~~~ 256 (303)
.....
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 87543
No 267
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=9.2e-18 Score=121.09 Aligned_cols=83 Identities=30% Similarity=0.602 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+++|+.+. +|+++|||||+|++.++|.+|+. +|..++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457999999999999999999998 99999999999998 89999999999999999999998 99999999999999
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
+..+...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 9877644
No 268
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=119.31 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=76.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEE-ecCCCCCcccEEEEEEccHHHHHHHHHHhC--CCCCCCCCce
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVI-RNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQN 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~ 154 (303)
...++|||+||+.++|+++|+++|+.||. |.++.+. .++.+|+++|||||+|.+.++|.+|++.|+ +..+ .++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCe
Confidence 45689999999999999999999999998 9999998 788889999999999999999999999996 4777 7889
Q ss_pred eEeeecCCCCC
Q 022077 155 FRLNWASFGAG 165 (303)
Q Consensus 155 i~v~~~~~~~~ 165 (303)
|+|.|+.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999975533
No 269
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-17 Score=131.31 Aligned_cols=84 Identities=31% Similarity=0.436 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+||+.++++++|+++|+ .||.|++|.|..+. ++.++|||||+|++.++|.+|+..|||..|+|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35578999999999999999999998 99999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q 022077 250 PATNKK 255 (303)
Q Consensus 250 ~~~~~~ 255 (303)
|+....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998654
No 270
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=124.46 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ |+|..| .++.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEE
Confidence 3566899999999999999999999999999887777777799999999999999999999998 999999 7888999
Q ss_pred eecC
Q 022077 158 NWAS 161 (303)
Q Consensus 158 ~~~~ 161 (303)
.++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8875
No 271
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=120.13 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCCcceEEEcCCCccC------CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCC
Q 022077 77 QPGEIRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 150 (303)
.....++|||+|||..+ |+++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 34557899999999999 789999999999999999888 35789999999999999999999999999999
Q ss_pred CCc-eeEeeecCC
Q 022077 151 GEQ-NFRLNWASF 162 (303)
Q Consensus 151 ~~~-~i~v~~~~~ 162 (303)
.|+ .|+|.|+..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 677 899999863
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=117.23 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||+++|+++|+++|+.||.+ ++++++++ +++++|||||+|.+.++|++|+ .+++..| .++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEEE
Confidence 3566899999999999999999999999954 99999998 8999999999999999999999 4799888 7788999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 887654
No 273
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=116.63 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
..+++|||+|||.++|+++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.|++..+...|+.|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45689999999999999999999999999999999854 479999999999999999999998744489999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|++..
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98754
No 274
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=115.49 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||++++++++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.|++..+...++.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999988764 579999999999999999988876533389999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9976543
No 275
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2e-17 Score=122.44 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCC---ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
....++|||+|||+++|+++|+++|+.||. |.++++++++. |+++|||||+|.+.++|++|++ +++..| .++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeE
Confidence 456789999999999999999999999999 89999999986 9999999999999999999998 899998 7889
Q ss_pred eEeeecC
Q 022077 155 FRLNWAS 161 (303)
Q Consensus 155 i~v~~~~ 161 (303)
|+|.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 9998775
No 276
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=115.88 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC--CCCCCCCCcee
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN--GTPMPNGEQNF 155 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~i 155 (303)
....++|||+||++++|+++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.|+ +..+ .|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l 83 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL--RNQPI 83 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCcEE
Confidence 346689999999999999999999999999999988765 5799999999999999999875 4456 89999
Q ss_pred EeeecCCCCCC
Q 022077 156 RLNWASFGAGE 166 (303)
Q Consensus 156 ~v~~~~~~~~~ 166 (303)
+|.|+......
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999865443
No 277
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=122.21 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCc-eEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEV-VAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
....++|||+|||+++|+++|+++|+.||.| .+|.+++++ +|+++|||||+|.+.++|.+|++. ++..| .++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEEE
Confidence 4567899999999999999999999999999 889999998 899999999999999999999976 99888 789999
Q ss_pred eeecCC
Q 022077 157 LNWASF 162 (303)
Q Consensus 157 v~~~~~ 162 (303)
|.++..
T Consensus 88 v~~a~~ 93 (114)
T 2cpy_A 88 VHVVTL 93 (114)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998763
No 278
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=8.2e-17 Score=125.60 Aligned_cols=84 Identities=23% Similarity=0.470 Sum_probs=78.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 144 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRV 144 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 999754
No 279
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.5e-17 Score=114.66 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
..++|||+||+.++++++|+++|+ .| .|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999998 99 99999884 46899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022077 252 TNKKT 256 (303)
Q Consensus 252 ~~~~~ 256 (303)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wg1_A 76 PTDAL 80 (88)
T ss_dssp CCCCC
T ss_pred CCCce
Confidence 77653
No 280
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=120.56 Aligned_cols=80 Identities=14% Similarity=0.290 Sum_probs=71.2
Q ss_pred CCcceEEEcCCCccCCHHHHH----HHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 79 GEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
...++|||+||++.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCE
Confidence 346899999999999999876 6999999999887753 678999999999999999999999999999 7889
Q ss_pred eEeeecCCC
Q 022077 155 FRLNWASFG 163 (303)
Q Consensus 155 i~v~~~~~~ 163 (303)
|+|.|+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999998754
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-18 Score=121.05 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=74.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |+|..+ .++.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~ 88 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIK 88 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEE
Confidence 3456789999999999999999999999999887 666776788999999999999999999998 999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9998754
No 282
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.5e-17 Score=136.02 Aligned_cols=81 Identities=21% Similarity=0.461 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcC--CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG--EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
...++|||+||++++|+++|+++|+.|| .|.+|+|++++.+++++|||||+|.+.++|.+||+.|+|..| .++.|+
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~ 143 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPV 143 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeE
Confidence 3668999999999999999999999999 999999999999999999999999999999999999999999 788899
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.++.
T Consensus 144 V~~a~ 148 (229)
T 3q2s_C 144 VTPVN 148 (229)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
No 283
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=4.5e-17 Score=121.79 Aligned_cols=82 Identities=18% Similarity=0.419 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|+.||.|.++.+.+++.+|+++|||||+|.+.++|.+|+ .|+|..+ .++.|+|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 35689999999999999999999999999999999999889999999999999999999999 7999999 78999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|+...
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98743
No 284
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.2e-17 Score=124.69 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCC---ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
....++|||+|||+++|+++|+++|+.||. |.+|++++++. |+++|||||+|.+.++|++|++ ++|..+ .++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEE
Confidence 356789999999999999999999999999 88999999986 9999999999999999999998 999999 7888
Q ss_pred eEeeecC
Q 022077 155 FRLNWAS 161 (303)
Q Consensus 155 i~v~~~~ 161 (303)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998764
No 285
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=120.05 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=70.5
Q ss_pred CCCCceEEE--cCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee-----C
Q 022077 170 DTPDHTIFV--GDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC-----S 242 (303)
Q Consensus 170 ~~~~~~l~v--~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~ 242 (303)
..++++||| +||+.++++++|+++|+ +||.|.+|.|..+ +|||||+|++.++|.+|++.|||.++ .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 456789999 77999999999999998 9999999887532 78999999999999999999999998 7
Q ss_pred CeeeEEeecccCC
Q 022077 243 TRPMRIGPATNKK 255 (303)
Q Consensus 243 g~~l~v~~~~~~~ 255 (303)
|+.|.|.|++...
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999987543
No 286
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=118.78 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC--CCCCCCCcee
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG--TPMPNGEQNF 155 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~i 155 (303)
...+++|||+|||+++|+++|+++|++||.|.++.++++ +|||||+|++.++|.+|++.|++ ..+ .|+.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeEE
Confidence 445789999999999999999999999999999999875 57999999999999999998885 456 78999
Q ss_pred EeeecCCCCCC
Q 022077 156 RLNWASFGAGE 166 (303)
Q Consensus 156 ~v~~~~~~~~~ 166 (303)
+|.|+......
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999765443
No 287
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=111.55 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCCce-EEEcCCCcccCHHH----HHHHHhhhC-CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 022077 171 TPDHT-IFVGDLAADVTDYM----LQETFRARY-PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (303)
Q Consensus 171 ~~~~~-l~v~nl~~~~~~~~----l~~~f~~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 244 (303)
.++.+ |||+||++.+++++ |+++|+ .| |+|.+| ++ |+|||+|.+.++|.+|++.|+|.++.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34556 99999999999987 558998 99 599887 23 8999999999999999999999999999
Q ss_pred eeEEeecccCCCCC
Q 022077 245 PMRIGPATNKKTVS 258 (303)
Q Consensus 245 ~l~v~~~~~~~~~~ 258 (303)
.|+|.|++.+.+.-
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999999887653
No 288
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=113.82 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=65.4
Q ss_pred cceEEEcCCCccC------CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc-
Q 022077 81 IRTLWIGDLQYWM------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ- 153 (303)
Q Consensus 81 ~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~- 153 (303)
+++|||+|||..+ |+++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCce
Confidence 3789999999999 779999999999999999887 35789999999999999999999999999999 555
Q ss_pred eeEe
Q 022077 154 NFRL 157 (303)
Q Consensus 154 ~i~v 157 (303)
.++|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 5654
No 289
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=116.27 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCc-cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
..+++|||+|||+ ++|+++|+++|++||.|.++.+++++ |||||+|++.++|.+|++.|++......|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 99999999999999999999998754 6999999999999999999987653338999999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999854
No 290
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=3.3e-17 Score=129.50 Aligned_cols=101 Identities=14% Similarity=0.330 Sum_probs=83.6
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhC----C-------CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
..++|||+|||.++++++|+++|+ .| | .|.++.+. +++|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 468999999999999999999998 99 5 55555553 44899999999999999999 899999
Q ss_pred eCCeeeEEeecccCCCCCCccccCCCCccCccccccCCCCCCcEEEEeeec-ccC-cccccccc
Q 022077 241 CSTRPMRIGPATNKKTVSGQQQYPKASYQNSQVAQSDDDPNNTTVSTVVIF-NIK-NPVFQTFV 302 (303)
Q Consensus 241 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~f~ 302 (303)
+.|+.|+|.++...... ...++|||+|+. ++| ++|.++|.
T Consensus 75 ~~g~~i~v~~~~~~~~~----------------------~~~~~l~v~nlp~~~t~~~l~~~f~ 116 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL----------------------PGAHKLFIGGLPNYLNDDQVKELLT 116 (172)
T ss_dssp ETTEECEEECCSSCCCC----------------------TTTTCEEEECCCTTCCHHHHHHHHH
T ss_pred ecCceeeecCCcccCCC----------------------CCCCEEEEEcCCCcCCHHHHHHHHH
Confidence 99999999987654322 125799999776 678 88888773
No 291
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=120.24 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=74.1
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCC---ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGE---VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
.....++|||+|||+++|+++|+++|+.||. |.++.+.+++. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 3467789999999999999999999999988 89999999986 9999999999999999999998 899888 778
Q ss_pred eeEeeecC
Q 022077 154 NFRLNWAS 161 (303)
Q Consensus 154 ~i~v~~~~ 161 (303)
.|+|.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 88888775
No 292
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=119.21 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCccCCHHHHH---HHHhhcCCceEEEEEecCCCC---CcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLN---TCFAHTGEVVAVKVIRNKQTG---QIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
...++|||+|||+++++++|+ ++|++||.|.++.+.+++.++ +++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--DG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--TT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--CC
Confidence 456899999999999999999 999999999999999887654 5569999999999999999999999999 78
Q ss_pred ceeEeeecCCCC
Q 022077 153 QNFRLNWASFGA 164 (303)
Q Consensus 153 ~~i~v~~~~~~~ 164 (303)
+.|+|.|+....
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997653
No 293
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.5e-16 Score=114.87 Aligned_cols=83 Identities=11% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCc-----ccCHHHHHHHHhhhCCCcceEEEEeeCCC-CCceeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 022077 171 TPDHTIFVGDLAA-----DVTDYMLQETFRARYPSTKGAKVVIDRLT-GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTR 244 (303)
Q Consensus 171 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 244 (303)
.++++|+|.|+-. +-++++|+++|+ +||.|+++.|.+++.+ ++++|+|||+|++.++|.+|+..|||+.++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999963 236899999998 9999999999998643 68899999999999999999999999999999
Q ss_pred eeEEeecccC
Q 022077 245 PMRIGPATNK 254 (303)
Q Consensus 245 ~l~v~~~~~~ 254 (303)
.|+|.|+...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999764
No 294
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.69 E-value=1.1e-16 Score=125.84 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+..+|+++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..| .++.|+|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999 7899999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 9987543
No 295
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=1.5e-17 Score=123.63 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcc--eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTK--GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
....++|||+||++++++++|+++|+ .| .|+ +|+|++|+. |+++|||||+|++.++|.+|+.. ++..|+||.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34568899999999999999999998 99 677 899999986 99999999999999999999985 78999999999
Q ss_pred EeecccCC
Q 022077 248 IGPATNKK 255 (303)
Q Consensus 248 v~~~~~~~ 255 (303)
|.++..++
T Consensus 115 V~~a~~~e 122 (126)
T 2hgm_A 115 VFKSSQEE 122 (126)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887653
No 296
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=109.88 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 3567899999999999999999999999999999987 36999999999999999999999998 7889999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 297
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2.2e-17 Score=112.02 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=69.1
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeec
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWA 160 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~ 160 (303)
+|||+|||.++|+++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++. ++..+ .|+.++|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEEC
Confidence 689999999999999999999999999999999998999999999999999999999974 88888 7777777764
No 298
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=9.3e-17 Score=116.86 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=70.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .|+.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 34567899999999999999999999999999999988 47999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9998754
No 299
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=113.66 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=74.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|+.| ..+.++.++.+++++|||||+|.+.++|.+|++.|+|..| .++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 4567899999999999999999999977 3688888888999999999999999999999999999999 7899999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9997553
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=115.33 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCcc-CCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 77 QPGEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
....+++|||+||+++ +|+++|+++|++||.|.++.+++. +|||||+|++.++|.+|++.|++......|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456789999999998 999999999999999999999753 579999999999999999988765433388999
Q ss_pred EeeecCCCC
Q 022077 156 RLNWASFGA 164 (303)
Q Consensus 156 ~v~~~~~~~ 164 (303)
+|.|+....
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987543
No 301
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=117.16 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
.+.++|||+|||+++|+++|+++|+.| .|.+|.+++++. |+++|||||+|.+.++|.+|+ .+++..| .++.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 456899999999999999999999999 899999999985 999999999999999999999 6899998 77888887
Q ss_pred ecC
Q 022077 159 WAS 161 (303)
Q Consensus 159 ~~~ 161 (303)
.+.
T Consensus 89 ~a~ 91 (109)
T 2dnn_A 89 PAT 91 (109)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 302
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=114.45 Aligned_cols=83 Identities=31% Similarity=0.456 Sum_probs=73.3
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||.++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 34567999999999999999999999999976 55655 5789999999999999999999999999999 789999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.|+.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999976533
No 303
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=3.4e-16 Score=120.66 Aligned_cols=83 Identities=12% Similarity=0.268 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
+....+|||+||++.+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|++|++.|+|..|.++++.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3456789999999999999999999999999999986532 568999999999999999999999999776799999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998653
No 304
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-16 Score=112.30 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceEEE
Confidence 356689999999999999999999999999999999864 47999999999999999999999999 7899999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987653
No 305
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-16 Score=111.37 Aligned_cols=79 Identities=19% Similarity=0.439 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|.+|++.|+|..+.+.++.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999988754 579999999999999999999999994338999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|+...
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98754
No 306
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.8e-16 Score=113.00 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCc-cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+||+. ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .|+.++|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 89 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLIL 89 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 4668999999998 99999999999999999999883 57999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998643
No 307
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4e-16 Score=113.63 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC---cee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE---QNF 155 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~---~~i 155 (303)
...++|||+|||+++|+++|+++|++||.|.++.+..+ |||||+|.+.++|++|++.|||..+.+.. +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999876 69999999999999999999999993311 899
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999976543
No 308
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=111.51 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345578999999999999999999999999986 666653 5678999999999999999999999999 788899
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 309
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=117.84 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 4568999999999999999999999999984433322222788999999999999999999999999999 78999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9976543
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=114.65 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=69.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+||+.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.|+|.|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEe
Confidence 458999999999999999999999999999999873 457999999999999999999999999 789999999
Q ss_pred cCC
Q 022077 160 ASF 162 (303)
Q Consensus 160 ~~~ 162 (303)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 863
No 311
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=114.28 Aligned_cols=80 Identities=18% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 345689999999999999999999999999999999876 57999999999999999999999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99976543
No 312
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.3e-16 Score=111.86 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce--eCCeee
Q 022077 169 DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF--CSTRPM 246 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l 246 (303)
......+|||+||++++++++|+++|+ +||.|++|+|+++ ++|||||+|++.++|.+ |+|.. ++|+.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 345678999999999999999999998 9999999999875 58999999999999983 45655 569999
Q ss_pred EEeecccCCC
Q 022077 247 RIGPATNKKT 256 (303)
Q Consensus 247 ~v~~~~~~~~ 256 (303)
+|.++.++..
T Consensus 77 ~v~~a~~k~~ 86 (89)
T 3d2w_A 77 HISNAEPKHN 86 (89)
T ss_dssp EEEECC----
T ss_pred EEEEcCCCCc
Confidence 9999988754
No 313
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=9.6e-17 Score=116.82 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcC-CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++|++.|||..+ .++.|+|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF--RGSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 4568999999999999999999999999 899888753 24789999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998644
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.3e-16 Score=117.45 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=66.1
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee-----e
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP-----M 246 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----l 246 (303)
..++|||+||+.++++++|+++|+ .||.|++|.|+.+ |||||+|++.++|.+|++.|||..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 468999999999999999999998 9999999998754 89999999999999999999999999998 6
Q ss_pred EEeecccCCC
Q 022077 247 RIGPATNKKT 256 (303)
Q Consensus 247 ~v~~~~~~~~ 256 (303)
+|..+..+..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 7766665443
No 315
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=9.3e-17 Score=114.63 Aligned_cols=81 Identities=21% Similarity=0.419 Sum_probs=73.1
Q ss_pred CCCcceEEEcCCCccCCHHHHH----HHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 78 PGEIRTLWIGDLQYWMDETYLN----TCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
....++|||+||+.++++++|+ ++|++||.|.++.+.+ +|.++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 3466899999999999999999 9999999999998874 577889999999999999999999999999 789
Q ss_pred eeEeeecCCC
Q 022077 154 NFRLNWASFG 163 (303)
Q Consensus 154 ~i~v~~~~~~ 163 (303)
.++|.|+...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999998754
No 316
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=108.68 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=69.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh-CCCCCCCCCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTF-NGTPMPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~i~ 156 (303)
....++|||+||+.++++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++.| +|..+ .++.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEE
Confidence 356689999999999999999999999999999999874 579999999999999999988 99888 778999
Q ss_pred eeecC
Q 022077 157 LNWAS 161 (303)
Q Consensus 157 v~~~~ 161 (303)
|.|+.
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 317
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=3.1e-16 Score=124.27 Aligned_cols=83 Identities=17% Similarity=0.321 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.+|.+..++ ++.++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~V 161 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDI 161 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999 7889999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 998643
No 318
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=8.4e-17 Score=115.98 Aligned_cols=81 Identities=27% Similarity=0.484 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++++++|+++|+.||.|.++.+.+++ +|+++|||||+|.+.++|.+|++ ++..+ .|+.+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999997 88778 7788888
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 887643
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=3.8e-16 Score=115.91 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEe
Q 022077 170 DTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIG 249 (303)
Q Consensus 170 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 249 (303)
....++|||+|+ ++++++|+++|+ .||.|.+|.+. .++|||||+|++.++|.+|+..|||..++|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999996 699999999998 99999999985 458899999999999999999999999999999999
Q ss_pred ecccCCCC
Q 022077 250 PATNKKTV 257 (303)
Q Consensus 250 ~~~~~~~~ 257 (303)
|++.+...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99987544
No 320
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=4e-16 Score=125.46 Aligned_cols=118 Identities=9% Similarity=0.026 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHh--CCCCCCCCCceeEeeecCCCCCCCC-----CCCCCceEEEcCCCcccCHHHHHHHHhhhCCCcceE
Q 022077 132 SRAGAERVLQTF--NGTPMPNGEQNFRLNWASFGAGEKR-----DDTPDHTIFVGDLAADVTDYMLQETFRARYPSTKGA 204 (303)
Q Consensus 132 ~~~~a~~a~~~l--~g~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~ 204 (303)
+.+.+..|++.. ....+.+.+. ++........... .....++|||+|||.++++++|+++|+ .||.|.+|
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~--~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v 139 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKT--KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNI 139 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSS--EEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccc--eEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEE
Confidence 556677777655 3334433333 3333321111000 122357899999999999999999998 99999999
Q ss_pred EEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 205 KVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 205 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
+|.++. ++.++|||||+|++.++|.+|+..++ ..++|+.|+|.|+..-
T Consensus 140 ~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 140 QMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 999986 58899999999999999999998654 6999999999997764
No 321
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=2.8e-16 Score=129.22 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCccc---------CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 169 DDTPDHTIFVGDLAADV---------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
.....++|||+||+..+ ++++|+++|+ .||.|++|+|+.+ +|||||+|.+.++|+.|++.|+|.
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 35668899999999998 7999999998 9999999999854 799999999999999999999999
Q ss_pred ee------------CCeeeEEeecccCCCCCC
Q 022077 240 FC------------STRPMRIGPATNKKTVSG 259 (303)
Q Consensus 240 ~~------------~g~~l~v~~~~~~~~~~~ 259 (303)
.| .|+.|.|.|++.+.+...
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-------
T ss_pred EEeccccccccccCCCCEEEEEEccCCCCHHH
Confidence 99 899999999998765543
No 322
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=108.67 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhc--CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHT--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
....++|||+||+.++|+++|+++|++| |.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEE
Confidence 4567899999999999999999999999 889888764 36999999999999999999999999 78999
Q ss_pred EeeecCCCCC
Q 022077 156 RLNWASFGAG 165 (303)
Q Consensus 156 ~v~~~~~~~~ 165 (303)
+|.|+.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 323
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=107.85 Aligned_cols=77 Identities=13% Similarity=0.283 Sum_probs=70.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+.++|+++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 76 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMHV 76 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEEE
Confidence 45678999999999999999999999999999999874 3999999999999999999999999 7899999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9997553
No 324
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4.3e-15 Score=109.90 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccE-EEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
.....|||+||++.+|+++|+++|++||.|.+|.+... .|| |||+|.+.++|.+|++.|||..|.++.+.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34456889999999999999999999999999998652 176 99999999999999999999999776689999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.++....
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9997553
No 325
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=117.60 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCc----eEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEV----VAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
...++|||+|||+++|+++|+++|+.||.| .+|.++.++ +|+++|||||+|.+.++|.+|++. ++..| .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 456899999999999999999999999975 689999985 899999999999999999999975 88888 6777
Q ss_pred eEeeecC
Q 022077 155 FRLNWAS 161 (303)
Q Consensus 155 i~v~~~~ 161 (303)
|+|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 7777553
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=112.20 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=71.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||+.++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 34567899999999999999999999999987665 33688999999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 9998654
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=115.18 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCC---CCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLT---GRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
...++|||+||+.++++++|+++|+ +||.|. +.++.+..+ |+++|||||+|++.++|.+|++.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4568999999999999999999998 999999 888888766 7899999999999999999999984 36777777
Q ss_pred EeecccC
Q 022077 248 IGPATNK 254 (303)
Q Consensus 248 v~~~~~~ 254 (303)
+..+...
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7655443
No 328
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=1.3e-15 Score=109.95 Aligned_cols=77 Identities=25% Similarity=0.495 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|+|..+ .++.|+|.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 78 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIEIV 78 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEEE
Confidence 4568999999999999999999999999999998863 4999999999999999999999999 78999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9976543
No 329
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=1.2e-15 Score=113.37 Aligned_cols=82 Identities=12% Similarity=0.324 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccE-EEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGY-GFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
+.....|||+||++.+|+++|+++|++||.|.+|.+..+. +|+ |||+|.+.++|.+|++.|||..+.++.+.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3455688999999999999999999999999999887642 467 9999999999999999999999977679999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|++...
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998653
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.1e-16 Score=109.55 Aligned_cols=72 Identities=18% Similarity=0.424 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhC----C-------CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARY----P-------STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
...++|||+||+.++++++|+++|+ .| | .|.++++..+ +|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3468999999999999999999998 99 8 8999888654 789999999999999999 99999
Q ss_pred eeCCeeeEEee
Q 022077 240 FCSTRPMRIGP 250 (303)
Q Consensus 240 ~~~g~~l~v~~ 250 (303)
.++|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=3e-16 Score=116.67 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCce--EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCcee
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVV--AVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNF 155 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i 155 (303)
....++|||+|||+++|+++|+++|+.| .|. +|.+++++. |+++|||||+|.+.++|++|++. ++..| .++.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEEE
Confidence 3566889999999999999999999999 676 899999986 99999999999999999999974 77777 77888
Q ss_pred EeeecC
Q 022077 156 RLNWAS 161 (303)
Q Consensus 156 ~v~~~~ 161 (303)
+|.++.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 887764
No 332
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=108.55 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEE-EEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+|||+++|+++|+++|+.||.|.++ .++.++.++ .|||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 456899999999999999999999999999999 477776544 399999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998754
No 333
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=114.37 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|||..+ .++.|+|.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3567999999999999999999999999999988864 457999999999999999999999999 78899999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98753
No 334
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=123.37 Aligned_cols=86 Identities=15% Similarity=0.332 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVA--------VKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
....++|||+||+.++++++|+++|++||.|.+ +.+..++.+++++|||||+|.+.++|.+|++.|+|..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 346689999999999999999999999999998 89999988899999999999999999999999999999
Q ss_pred CCCceeEeeecCCCCC
Q 022077 150 NGEQNFRLNWASFGAG 165 (303)
Q Consensus 150 ~~~~~i~v~~~~~~~~ 165 (303)
.++.|+|.|+.....
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 788999999875533
No 335
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.3e-16 Score=120.90 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+|||+++|+++|+++|+.|| +.+|.+++++. |+++|||||+|.+.++|++|+ .+++..| .++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEE
Confidence 345668999999999999999999999999 67999999985 999999999999999999999 7899988 778888
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.++...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 8887654
No 336
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=107.19 Aligned_cols=76 Identities=18% Similarity=0.444 Sum_probs=69.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|||.++|+++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999874 3999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998765
No 337
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=109.38 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCC-ceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC-CCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGE-VVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG-TPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g-~~~~~~~~~i~ 156 (303)
...++|||+||+.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.|+| ..+ .++.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEE
Confidence 45689999999999999999999999999 6655552 357999999999999999999999 888 789999
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997553
No 338
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=3e-15 Score=109.36 Aligned_cols=76 Identities=22% Similarity=0.367 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCcc-CCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 79 GEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 79 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
...++|||+||+.+ +|+++|+++|++||.|.++.+ ++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEE
Confidence 34589999999999 999999999999999999988 357999999999999999999999999 7899999
Q ss_pred eecCCCC
Q 022077 158 NWASFGA 164 (303)
Q Consensus 158 ~~~~~~~ 164 (303)
.|+....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 339
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.2e-16 Score=109.45 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCc-cCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 78 PGEIRTLWIGDLQY-WMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 78 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
....++|||+|||. ++|+++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 45678999999998 99999999999999999999884 47999999999999999999999999 678888
Q ss_pred eeecCCCC
Q 022077 157 LNWASFGA 164 (303)
Q Consensus 157 v~~~~~~~ 164 (303)
|.|+....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 88886543
No 340
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=110.62 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGP 250 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 250 (303)
...++|||+||+.++++++|+++|+ .||.|.+++|+.+ ++|||||+|++.++|++|+. .+..++|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 3568999999999999999999998 9999999999765 58999999999999976532 13446999999999
Q ss_pred cccCCCC
Q 022077 251 ATNKKTV 257 (303)
Q Consensus 251 ~~~~~~~ 257 (303)
+.++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 341
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.2e-16 Score=113.71 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=69.0
Q ss_pred ceEEEcCC----CccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEcc----HHH----HHHHHH--HhCCCC
Q 022077 82 RTLWIGDL----QYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS----RAG----AERVLQ--TFNGTP 147 (303)
Q Consensus 82 ~~l~v~nL----p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~g~~ 147 (303)
..|||+|| ++.+++++|+++|+.||.|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred CCCCCceeEeeecC
Q 022077 148 MPNGEQNFRLNWAS 161 (303)
Q Consensus 148 ~~~~~~~i~v~~~~ 161 (303)
+ .|+.++|....
T Consensus 83 I--~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 I--MGFKFEVILNK 94 (136)
T ss_dssp E--TTEEEEEEECC
T ss_pred e--cCcEEEEEECc
Confidence 9 77888887644
No 342
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=1.8e-15 Score=116.93 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 77 QPGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 77 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
.....++|||+||++++|+++|+++|+.||.|.++.+.++ ++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 3456789999999999999999999999999999999876 468999999999999999999999999 789999
Q ss_pred eeecCCC
Q 022077 157 LNWASFG 163 (303)
Q Consensus 157 v~~~~~~ 163 (303)
|.|+...
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998644
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-15 Score=106.11 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=69.3
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|| ++|+++|+++|++||.|.++.+. +++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 346689999996 89999999999999999999884 4568999999999999999999999999 7899999
Q ss_pred eecCCCCC
Q 022077 158 NWASFGAG 165 (303)
Q Consensus 158 ~~~~~~~~ 165 (303)
.|+.....
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99976533
No 344
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=106.68 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=68.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+||+.++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ |+|..+ .++.|+|.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEE
Confidence 456799999999999999999999999999987 66665665 99999999999999999 999999 78899999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 88644
No 345
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=2e-15 Score=105.66 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||+++++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|++.|+|..+ .++.++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 356899999999999999999999999 99998884 5678999999999999999999999999 78999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
|+...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 346
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=1.7e-15 Score=109.26 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCCceEEEcCC--CcccC--------HHHHHHHHhhhCCCcceEEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHHhCC
Q 022077 171 TPDHTIFVGDL--AADVT--------DYMLQETFRARYPSTKGAKVVIDRLT--GRTKGYGFVRFGDESEQLRAMTEMNG 238 (303)
Q Consensus 171 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~~G~i~~~~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g 238 (303)
.++++|.|.|+ +.++. +++|+++|+ +||.|++++|.++..+ ++++|+|||+|++.++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 46789999998 33333 479999998 9999999999988754 36789999999999999999999999
Q ss_pred ceeCCeeeEEeecccC
Q 022077 239 VFCSTRPMRIGPATNK 254 (303)
Q Consensus 239 ~~~~g~~l~v~~~~~~ 254 (303)
+.++||.|+|.|+...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998764
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1e-15 Score=107.26 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
....+|||+|||+++|+++|+++|++||.|.++.++++ ++|||||+|.+.++|. .++|..+.+.++.+++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 45689999999999999999999999999999998874 6789999999999987 35777776689999999
Q ss_pred ecCCC
Q 022077 159 WASFG 163 (303)
Q Consensus 159 ~~~~~ 163 (303)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98743
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.2e-15 Score=107.30 Aligned_cols=84 Identities=12% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCccc-----------CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 169 DDTPDHTIFVGDLAADV-----------TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~~-----------~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
...++++|+|.||-... ++++|+++|+ +||.|.+|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 44568899999994332 2589999998 9999999965 443 379999999999999999999999
Q ss_pred CceeCCeeeEEeecccCCCC
Q 022077 238 GVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 238 g~~~~g~~l~v~~~~~~~~~ 257 (303)
|..++|+.|+|.|+.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999887544
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.6e-15 Score=101.24 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=63.7
Q ss_pred ceEEEcCCCccCCHHH----HHHHHhhcC-CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeE
Q 022077 82 RTLWIGDLQYWMDETY----LNTCFAHTG-EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
+.|||+||++++++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr~i~ 77 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGNRII 77 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCceEE
Confidence 3499999999999988 558999995 99888 33 8999999999999999999999999 889999
Q ss_pred eeecCCCCC
Q 022077 157 LNWASFGAG 165 (303)
Q Consensus 157 v~~~~~~~~ 165 (303)
|.++...+.
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999986644
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=120.03 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEE-----EecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKV-----IRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~-----~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
...++|||+||+.++|+++|+++|+.||.|..+.+ ++...+|+++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CCc
Confidence 45689999999999999999999999999876410 11123688999999999999999999999999999 789
Q ss_pred eeEeeecCCC
Q 022077 154 NFRLNWASFG 163 (303)
Q Consensus 154 ~i~v~~~~~~ 163 (303)
.|+|.|+...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998654
No 351
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=108.59 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=67.5
Q ss_pred CCcceEEE--cCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC---CCCCc
Q 022077 79 GEIRTLWI--GDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM---PNGEQ 153 (303)
Q Consensus 79 ~~~~~l~v--~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~---~~~~~ 153 (303)
...++||| |||++++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+ .+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 889999999999999999999999877542 57999999999999999999999876 34578
Q ss_pred eeEeeecCC
Q 022077 154 NFRLNWASF 162 (303)
Q Consensus 154 ~i~v~~~~~ 162 (303)
.+.+.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 888888763
No 352
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3.3e-15 Score=134.57 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=77.9
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+||+..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..| .++.|+|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999 7899999
Q ss_pred eecCC
Q 022077 158 NWASF 162 (303)
Q Consensus 158 ~~~~~ 162 (303)
.|+..
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 99864
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=110.86 Aligned_cols=64 Identities=20% Similarity=0.383 Sum_probs=59.4
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCC---CCcccEEEEEEccHHHHHHHHHHh
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT---GQIEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l 143 (303)
...++|||+||++++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4568999999999999999999999999999 888887766 799999999999999999999988
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=5.3e-15 Score=108.73 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCceEEEcCCCc--cc---CHHHHHHHHhhhCCCcceEEEEeeCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 172 PDHTIFVGDLAA--DV---TDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 172 ~~~~l~v~nl~~--~~---~~~~l~~~f~~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
++++|+|.|+-. ++ .++||+++|+ +||.|.+|.|.++.. +++++|+|||+|.+.++|.+|+..|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 578899999832 22 3689999998 999999999999864 3567899999999999999999999999999
Q ss_pred CeeeEEeecccC
Q 022077 243 TRPMRIGPATNK 254 (303)
Q Consensus 243 g~~l~v~~~~~~ 254 (303)
||.|+|.|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998653
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.1e-15 Score=110.10 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce----
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN---- 154 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~---- 154 (303)
...++|||+||++++|+++|+++|++||.|.++.++.+ |||||+|.+.++|.+|++.|||..| .++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeE
Confidence 35689999999999999999999999999999998765 7999999999999999999999999 4544
Q ss_pred -eEeeecC
Q 022077 155 -FRLNWAS 161 (303)
Q Consensus 155 -i~v~~~~ 161 (303)
+++..+.
T Consensus 85 ~i~v~~~~ 92 (115)
T 3beg_B 85 YIRVKVDG 92 (115)
T ss_dssp BCEEEECC
T ss_pred EEEeccCC
Confidence 6666554
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=1.5e-15 Score=109.37 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=63.1
Q ss_pred EcCCCcccCHHHHHHHH------------hhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 178 VGDLAADVTDYMLQETF------------RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 178 v~nl~~~~~~~~l~~~f------------~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
+.+|+..+++++|+++| + +||.|++|.|.++. +++++|||||+|++.++|.+|+..|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777777666555 8 99999999999886 4788999999999999999999999999999999
Q ss_pred eEEeec
Q 022077 246 MRIGPA 251 (303)
Q Consensus 246 l~v~~~ 251 (303)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=5.2e-15 Score=103.21 Aligned_cols=73 Identities=23% Similarity=0.530 Sum_probs=65.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhc----C-------CceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCC
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHT----G-------EVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 146 (303)
....++|||+|||.++|+++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|+|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8988888754 579999999999999999 99999
Q ss_pred CCCCCCceeEeee
Q 022077 147 PMPNGEQNFRLNW 159 (303)
Q Consensus 147 ~~~~~~~~i~v~~ 159 (303)
.+ .++.++|.+
T Consensus 76 ~~--~g~~l~V~r 86 (87)
T 2hzc_A 76 IF--QGQSLKIRR 86 (87)
T ss_dssp EE--TTEECEEEC
T ss_pred EE--CCeEEEEeC
Confidence 99 778888764
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.7e-14 Score=103.96 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCc-----cCCHHHHHHHHhhcCCceEEEEEecCCC-CCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 79 GEIRTLWIGDLQY-----WMDETYLNTCFAHTGEVVAVKVIRNKQT-GQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 79 ~~~~~l~v~nLp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
..+++|+|.|+-. +-++++|++.|++||.|.++.+.+++.+ ++++|+|||+|.+.++|.+|++.|||+.+ .|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 4568999999963 3478999999999999999999998654 68899999999999999999999999999 78
Q ss_pred ceeEeeecCC
Q 022077 153 QNFRLNWASF 162 (303)
Q Consensus 153 ~~i~v~~~~~ 162 (303)
+.|++.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999998853
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=1.1e-14 Score=107.91 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEe
Q 022077 78 PGEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRL 157 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v 157 (303)
....++|||+|| ++|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|.+|++.|+|..+ .++.|+|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 356789999996 69999999999999999999885 3568999999999999999999999999 7899999
Q ss_pred eecCCC
Q 022077 158 NWASFG 163 (303)
Q Consensus 158 ~~~~~~ 163 (303)
.|+...
T Consensus 106 ~~a~~~ 111 (121)
T 2bz2_A 106 NIARKQ 111 (121)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 998755
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=101.82 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...++|||+|||.++|+++|+++|++||.|.++.+.++ ++|||||+|.+.++|++ +++..+.+.++.|++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 45689999999999999999999999999999998764 57899999999999974 4565665688999999
Q ss_pred ecCCCCC
Q 022077 159 WASFGAG 165 (303)
Q Consensus 159 ~~~~~~~ 165 (303)
|+.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9875533
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=3.2e-14 Score=114.32 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeee
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNW 159 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~ 159 (303)
..++|||+|||.++|+++|+++|+.||.|.++.+.++. +|+++|||||+|++.++|.+|++.+ +..+ .|+.|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeE--CCEEEEEEE
Confidence 45899999999999999999999999999999999987 5899999999999999999999765 4466 789999998
Q ss_pred cCC
Q 022077 160 ASF 162 (303)
Q Consensus 160 ~~~ 162 (303)
+..
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 763
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.3e-13 Score=113.33 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=70.4
Q ss_pred CCCcceEEEcCCCccC---------CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCC
Q 022077 78 PGEIRTLWIGDLQYWM---------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPM 148 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~ 148 (303)
....++||||||+..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999864 57999999999999999999999998
Q ss_pred CC----------CCceeEeeecCCC
Q 022077 149 PN----------GEQNFRLNWASFG 163 (303)
Q Consensus 149 ~~----------~~~~i~v~~~~~~ 163 (303)
.. .++.|+|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 32 6789999999754
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-13 Score=95.37 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=59.1
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
..+++++|+++|+ +||.|++|.|+ ++++|||||+|++.++|.+|+..+++ +.|+.|+|.|++.+...
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5789999999998 99999999997 35699999999999999999997554 67999999999877643
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.8e-13 Score=96.14 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCccC-----------CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCC
Q 022077 78 PGEIRTLWIGDLQYWM-----------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGT 146 (303)
Q Consensus 78 ~~~~~~l~v~nLp~~~-----------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 146 (303)
+..+++|+|.||-... ++++|+++|++||.|.++.+ .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3567899999994332 25799999999999999965 554 37899999999999999999999999
Q ss_pred CCCCCCceeEeeecCCC
Q 022077 147 PMPNGEQNFRLNWASFG 163 (303)
Q Consensus 147 ~~~~~~~~i~v~~~~~~ 163 (303)
.+ .++.|+|.|+...
T Consensus 88 ~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WF--GGRQITAQAWDGT 102 (112)
T ss_dssp EE--TTEECEEEECCSC
T ss_pred EE--CCcEEEEEEeCCC
Confidence 99 7899999998754
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.8e-13 Score=98.83 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCcc----------cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 171 TPDHTIFVGDLAAD----------VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 171 ~~~~~l~v~nl~~~----------~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
.++++|.|.|+=.. -.++||+++|+ +||.|++|.|.++. .+|+|||+|++.++|.+|+..|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678888887321 12468999998 99999999986552 48999999999999999999999999
Q ss_pred eCCeeeEEeecccC
Q 022077 241 CSTRPMRIGPATNK 254 (303)
Q Consensus 241 ~~g~~l~v~~~~~~ 254 (303)
++||.|+|.|+...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999998754
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=3.5e-13 Score=116.69 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=66.7
Q ss_pred CCCCCCceEEEcC--CCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---C
Q 022077 168 RDDTPDHTIFVGD--LAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC---S 242 (303)
Q Consensus 168 ~~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~ 242 (303)
....++++|||+| |+..+++++|+++|+ +||.|++|.+.. +||||||+|++.++|++|++.|||.++ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 3457789999999 578999999999998 999999887643 479999999999999999999999987 3
Q ss_pred Ce--eeEEeecc
Q 022077 243 TR--PMRIGPAT 252 (303)
Q Consensus 243 g~--~l~v~~~~ 252 (303)
|+ .|.|.|+.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 45 57788874
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=9.3e-14 Score=99.97 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=63.5
Q ss_pred EcCCCccCCHHHHHHHH------------hhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 86 IGDLQYWMDETYLNTCF------------AHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 86 v~nLp~~~t~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
+.||++.+++++|++.| ++||.|.++.+.+++ +++++|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 56777888888777666 999999999999887 478999999999999999999999999999 788
Q ss_pred eeEeeec
Q 022077 154 NFRLNWA 160 (303)
Q Consensus 154 ~i~v~~~ 160 (303)
.|++.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9998876
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=6.3e-13 Score=95.73 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=68.9
Q ss_pred CcceEEEcCC--CccCC--------HHHHHHHHhhcCCceEEEEEecCCC--CCcccEEEEEEccHHHHHHHHHHhCCCC
Q 022077 80 EIRTLWIGDL--QYWMD--------ETYLNTCFAHTGEVVAVKVIRNKQT--GQIEGYGFIEFISRAGAERVLQTFNGTP 147 (303)
Q Consensus 80 ~~~~l~v~nL--p~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~g~~ 147 (303)
.++.|.+.|+ +..+. +++|++.|++||.|.++.+.+++.+ ++++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33443 3689999999999999999988754 4688999999999999999999999999
Q ss_pred CCCCCceeEeeecC
Q 022077 148 MPNGEQNFRLNWAS 161 (303)
Q Consensus 148 ~~~~~~~i~v~~~~ 161 (303)
+ .|+.|++.+..
T Consensus 84 f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 F--ANRVVVTKYCD 95 (105)
T ss_dssp E--TTEECEEEEEC
T ss_pred e--CCCEEEEEEeC
Confidence 9 78999998865
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=9.5e-13 Score=96.66 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=69.4
Q ss_pred CcceEEEcCCCc--cC---CHHHHHHHHhhcCCceEEEEEecCC----CCCcccEEEEEEccHHHHHHHHHHhCCCCCCC
Q 022077 80 EIRTLWIGDLQY--WM---DETYLNTCFAHTGEVVAVKVIRNKQ----TGQIEGYGFIEFISRAGAERVLQTFNGTPMPN 150 (303)
Q Consensus 80 ~~~~l~v~nLp~--~~---t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 150 (303)
.+++|++.|+-. ++ -+++|++.|++||.|.++.+.+++. +++++|++||+|.+.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 568999999842 22 3679999999999999999999864 457889999999999999999999999999
Q ss_pred CCceeEeeecC
Q 022077 151 GEQNFRLNWAS 161 (303)
Q Consensus 151 ~~~~i~v~~~~ 161 (303)
.|+.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 88999998865
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.5e-12 Score=111.31 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=65.1
Q ss_pred CCCcceEEEcC--CCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC-CCCc-
Q 022077 78 PGEIRTLWIGD--LQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP-NGEQ- 153 (303)
Q Consensus 78 ~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~-~~~~- 153 (303)
...+++||||| |+..+|+++|+++|++||.|.++.+.. ++|||||+|++.++|++|++.|||..+. ..|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999877643 4689999999999999999999999873 2233
Q ss_pred -eeEeeecC
Q 022077 154 -NFRLNWAS 161 (303)
Q Consensus 154 -~i~v~~~~ 161 (303)
.+.+.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777764
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=85.74 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=63.4
Q ss_pred CCCCceEEEcCCCc----ccCH----HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 170 DTPDHTIFVGDLAA----DVTD----YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 170 ~~~~~~l~v~nl~~----~~~~----~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
..+..||+|..++. ++-+ .+|.+.|+ .||.|..++|+.++ +||+|++.++|.+|++ |||..+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 35567888877652 2333 67999998 99999999998874 8999999999999998 999999
Q ss_pred CCeeeEEeecccC
Q 022077 242 STRPMRIGPATNK 254 (303)
Q Consensus 242 ~g~~l~v~~~~~~ 254 (303)
+||.|+|+++++.
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999998865
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.3e-11 Score=84.53 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=55.8
Q ss_pred ccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecCCCC
Q 022077 91 YWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWASFGA 164 (303)
Q Consensus 91 ~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~~~~ 164 (303)
.++++++|+++|++||.|.+|.+. ++++|||||+|.+.++|.+|++.+++ + .++.|+|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--VDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--SSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--CCCeEEEEEccCCC
Confidence 468999999999999999999987 35789999999999999999987544 4 57889999987543
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=5.4e-11 Score=86.65 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=63.0
Q ss_pred CcceEEEcCCCccC----------CHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 80 EIRTLWIGDLQYWM----------DETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 80 ~~~~l~v~nLp~~~----------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
.++.|.+.|+=..- -+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|++.|||+.+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 45788888874321 235788999999999999886653 479999999999999999999999999
Q ss_pred CCCceeEeeecC
Q 022077 150 NGEQNFRLNWAS 161 (303)
Q Consensus 150 ~~~~~i~v~~~~ 161 (303)
.|+.|++.++.
T Consensus 81 -~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 -AGKMITAAYVP 91 (114)
T ss_dssp -TTEECEEEEEC
T ss_pred -CCEEEEEEEEc
Confidence 78999998864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.5e-11 Score=87.17 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=68.6
Q ss_pred CCCCCceEEEcCCCcc-cCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCC-HHHHHHHHHHhC--CceeCCe
Q 022077 169 DDTPDHTIFVGDLAAD-VTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD-ESEQLRAMTEMN--GVFCSTR 244 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~ 244 (303)
....++.|+|+||+.+ ++.++|+++|+ .||.|.+|.+..+.. .|||+|.+ .++|..|+..|+ +..|+|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3466789999999999 99999999998 999999999987742 59999999 899999999994 7889999
Q ss_pred eeEEeecccC
Q 022077 245 PMRIGPATNK 254 (303)
Q Consensus 245 ~l~v~~~~~~ 254 (303)
.+++......
T Consensus 87 ~~~~evL~Ge 96 (121)
T 1owx_A 87 EVTWEVLEGE 96 (121)
T ss_dssp SEEEEECCHH
T ss_pred EEEEEECCCH
Confidence 9888776543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.6e-11 Score=81.97 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=63.5
Q ss_pred CCCCCceEEEcCCCcc-----cCH----HHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 169 DDTPDHTIFVGDLAAD-----VTD----YMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 169 ~~~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
...+..||+|..++.+ +-+ .+|.+.|+ .||.|..++++.|+ +||+|.+.++|.+|++ |||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 4567789999887632 222 56899998 99999999999873 9999999999999998 9999
Q ss_pred eeCCeeeEEeeccc
Q 022077 240 FCSTRPMRIGPATN 253 (303)
Q Consensus 240 ~~~g~~l~v~~~~~ 253 (303)
.++||.|+|++..+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999998653
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=2.4e-10 Score=93.82 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=61.7
Q ss_pred cCHHHHHHHHhhhCCCcceEEEEeeCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccC
Q 022077 185 VTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNK 254 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 254 (303)
-.+++|++.|+ +||.|.++.|.++.. ++.++|++||+|.+.++|.+|+..|||+.++||.|+|.|....
T Consensus 141 e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 35689999998 999999999996654 3488999999999999999999999999999999999998653
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=6.3e-10 Score=81.09 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=61.6
Q ss_pred CCcceEEEcCCCcc-CCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEcc-HHHHHHHHHHhCCCCCCCCCceeE
Q 022077 79 GEIRTLWIGDLQYW-MDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFIS-RAGAERVLQTFNGTPMPNGEQNFR 156 (303)
Q Consensus 79 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~g~~~~~~~~~i~ 156 (303)
...+.|||+||+.+ ++.++|+++|+.||.|..|.+.++.. .|||+|.+ ..+|..|++.|+...+...+..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56789999999999 99999999999999999999988764 59999999 899999999986443322455555
Q ss_pred ee
Q 022077 157 LN 158 (303)
Q Consensus 157 v~ 158 (303)
+.
T Consensus 90 ~e 91 (121)
T 1owx_A 90 WE 91 (121)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=5.9e-09 Score=71.21 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=57.7
Q ss_pred ceEEEcCCC----ccCCH----HHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 82 RTLWIGDLQ----YWMDE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 82 ~~l~v~nLp----~~~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
.||+|.-.+ .+..+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+ .++
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~Gr 76 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--LNR 76 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--TTE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--CCe
Confidence 466666554 22333 5788899999999999999875 8999999999999997 999999 899
Q ss_pred eeEeeecCC
Q 022077 154 NFRLNWASF 162 (303)
Q Consensus 154 ~i~v~~~~~ 162 (303)
.++|..++.
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999998764
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.2e-08 Score=69.99 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhC-----CCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARY-----PSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRP 245 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 245 (303)
...++|-|-|||..+++..|+.+++ .| |.|+.+.+..| .+-|+|+|++...|.+|...|+|.+|.|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve-~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQ-EEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHH-HHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHh-hhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3467899999999999999999998 99 99999998877 345999999999999999999999999999
Q ss_pred eEEeecc
Q 022077 246 MRIGPAT 252 (303)
Q Consensus 246 l~v~~~~ 252 (303)
|++.-..
T Consensus 92 Lr~gTv~ 98 (117)
T 2l9w_A 92 IRSGTIN 98 (117)
T ss_dssp EEEECHH
T ss_pred EEecCHH
Confidence 9997543
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=1.3e-08 Score=83.49 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCHHHHHHHHhhcCCceEEEEEecCC----CCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEeeecC
Q 022077 93 MDETYLNTCFAHTGEVVAVKVIRNKQ----TGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLNWAS 161 (303)
Q Consensus 93 ~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~~~~ 161 (303)
-.+++|++.|++||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|+|+.+ .||.|++.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--CCeEEEEEEcC
Confidence 35678999999999999999986643 458999999999999999999999999999 78889988765
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.3e-08 Score=68.59 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=57.7
Q ss_pred ceEEEcCCCcc-----CCH----HHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCC
Q 022077 82 RTLWIGDLQYW-----MDE----TYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGE 152 (303)
Q Consensus 82 ~~l~v~nLp~~-----~t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 152 (303)
.||+|.-++.. ..+ .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|++ |+|..+ .+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v--~G 84 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV--KG 84 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE--TT
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee--CC
Confidence 57888776532 222 4688899999999999999875 9999999999999998 999999 88
Q ss_pred ceeEeeecC
Q 022077 153 QNFRLNWAS 161 (303)
Q Consensus 153 ~~i~v~~~~ 161 (303)
+.++|.+.+
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.6e-06 Score=60.62 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhc-----CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHT-----GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
+..++|-+-|||..+++..|+.++..+ |.++.+.+..|.. -|+|+|.+...|.+|.-.|+|..| .++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef--~gr 90 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQF--QGK 90 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEE--TTE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeee--cCe
Confidence 346889999999999999999999999 9999999988863 599999999999999989999999 566
Q ss_pred eeEee
Q 022077 154 NFRLN 158 (303)
Q Consensus 154 ~i~v~ 158 (303)
.+++.
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=1.5e-06 Score=60.57 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=63.1
Q ss_pred CceEEEcCCCccc-C----HHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 022077 173 DHTIFVGDLAADV-T----DYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMR 247 (303)
Q Consensus 173 ~~~l~v~nl~~~~-~----~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 247 (303)
.++|+|.||+.++ . .+.++++|. .|+.+.....++.- .-..|.|.+.++|.+|...||+..+.|+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 4689999998865 2 257899998 99999887777553 1378999999999999999999999999999
Q ss_pred Eeeccc
Q 022077 248 IGPATN 253 (303)
Q Consensus 248 v~~~~~ 253 (303)
|.|+..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999984
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=0.0002 Score=49.69 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=61.5
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhh----CCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRAR----YPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPM 246 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 246 (303)
...++|.|.|||..+.++.|.-+|+.. -|.|.++.... +-|+|+|.+.+.|++.+.. ..+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 346789999999999999999999731 36677776642 3599999999999999874 3688999999
Q ss_pred EEeecccCCC
Q 022077 247 RIGPATNKKT 256 (303)
Q Consensus 247 ~v~~~~~~~~ 256 (303)
.|.-..++..
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987666553
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00026 Score=49.11 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhh---c--CCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCc
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAH---T--GEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQ 153 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 153 (303)
...++|.|.|||..+.++.|.-+|+. . |.|.+++... +-|+|+|.+.+.|++.++. ....+ .+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L--~~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL--HGA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS--SSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee--cCe
Confidence 45679999999999999999999987 2 4577777654 2599999999999998853 24555 556
Q ss_pred eeEeeecCCCCCCCCCCCCCceEEEcCCCcccC
Q 022077 154 NFRLNWASFGAGEKRDDTPDHTIFVGDLAADVT 186 (303)
Q Consensus 154 ~i~v~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 186 (303)
.+.|.-.. .....+|++.+|+..++
T Consensus 75 ~LsV~P~~--------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP--------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC--------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC--------CCCcceEeeecCCCCCC
Confidence 66665432 23456788999988764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.76 E-value=0.00018 Score=49.28 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
....++| +.|.++...||.++|+ .||.| .|+++.|. .|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs-~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFS-AFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHT-TTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhh-ccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456777 9999999999999998 99965 47777663 59999999999999998763
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=9.2e-05 Score=51.63 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=63.2
Q ss_pred CcceEEEcCCCccC-C----HHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCce
Q 022077 80 EIRTLWIGDLQYWM-D----ETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQN 154 (303)
Q Consensus 80 ~~~~l~v~nLp~~~-t----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 154 (303)
-.++|+|.||+..+ + .+.++++|..|+.+......+.-. -..|.|.+.++|.+|...|++..+ .|..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f--~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEF--LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEE--TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhcccee--cCce
Confidence 45789999998766 2 257789999999998888887643 579999999999999999999999 7788
Q ss_pred eEeeecCC
Q 022077 155 FRLNWASF 162 (303)
Q Consensus 155 i~v~~~~~ 162 (303)
+++-++..
T Consensus 76 ~r~YFgq~ 83 (104)
T 1wey_A 76 MKLYFAQT 83 (104)
T ss_dssp CEEECCCC
T ss_pred eEEEecCC
Confidence 99999873
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.71 E-value=0.00014 Score=49.82 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=56.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCC--ceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDESEQLRAMTEMNGVFCS 242 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 242 (303)
++|.|++||..++++++.+.++ ....+....++..+.+.+ .-.-|+|.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999998 788777666666553332 2356999999999999999999998863
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00042 Score=49.69 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC-eeeEEe
Q 022077 171 TPDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCST-RPMRIG 249 (303)
Q Consensus 171 ~~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 249 (303)
...+.|.|.+.+... ...|.++|+ +||.|.+... . . ...+-.|+|++..+|++||.. ||..++| -.|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~--~--~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVM--S--N--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEE--C--S--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEecc--C--C--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 345678888988885 566778887 9999998775 1 1 246899999999999999985 9999975 666777
Q ss_pred ecccC
Q 022077 250 PATNK 254 (303)
Q Consensus 250 ~~~~~ 254 (303)
....+
T Consensus 93 p~~d~ 97 (119)
T 1wwh_A 93 PCIDK 97 (119)
T ss_dssp ECCCH
T ss_pred ECCCH
Confidence 65433
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.48 E-value=0.0005 Score=47.07 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=55.8
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCC--cccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQ--IEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
++|.|++||+.+|++++.+.++....+........+.+.+ .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5789999999999999999999988776666655543322 2357999999999999999999998873
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.32 E-value=0.0012 Score=45.26 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=47.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 144 (303)
....+++ +.|......||.++|+.||.| .|+.+-|. .|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445666 999999999999999999965 47777775 69999999999999998764
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00055 Score=47.03 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=45.8
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
..++| +.|.++...||.++|+ .||.| .|+++.|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45677 9999999999999998 99944 47777663 59999999999999999774
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.78 E-value=0.00089 Score=46.10 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=48.9
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCC--ceeEEEEEeCCHHHHHHHHHHhCCcee
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGR--TKGYGFVRFGDESEQLRAMTEMNGVFC 241 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 241 (303)
.+-+|.|+.||..+|++++.+.++ ..-.+.....+....+.+ .-.-|+|.|.+.++...-.+..+|..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 356899999999999999888886 443332222222221111 123599999999999999999999886
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.78 E-value=0.0019 Score=46.97 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=54.6
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceE-EEEeeCC--------CC-----CceeEEEEEeCCHHHHHHHHHHhCCc
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGA-KVVIDRL--------TG-----RTKGYGFVRFGDESEQLRAMTEMNGV 239 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~-~i~~~~~--------~~-----~~~g~afV~f~~~~~A~~A~~~l~g~ 239 (303)
..|.|.+.|.+... .+.++|+ +||.|.+- .+.++.. .. ...++..|+|++..+|.+||.. ||.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred eEEEEEecCHHHHH-HHHHHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45666677766555 4668887 99999872 2111000 00 1245789999999999999985 999
Q ss_pred eeCCeeeEEeecccC
Q 022077 240 FCSTRPMRIGPATNK 254 (303)
Q Consensus 240 ~~~g~~l~v~~~~~~ 254 (303)
.|+|..|-|.+.+..
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998888877543
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.012 Score=42.22 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCCCCCCCCCceeEee
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNGTPMPNGEQNFRLN 158 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~i~v~ 158 (303)
...+.|.|-+.+... .+.|...|++||.|.+..... ...+-.|.|.+..+|++||. .||..+. ++..|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEET-TTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEEEE
Confidence 456788888998885 567888999999998877621 12389999999999999995 5998883 23444444
Q ss_pred e
Q 022077 159 W 159 (303)
Q Consensus 159 ~ 159 (303)
+
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.0041 Score=42.72 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=45.5
Q ss_pred eEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhC
Q 022077 83 TLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFN 144 (303)
Q Consensus 83 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 144 (303)
.++| +.|......||.++|+.||.| .|..+-|. .|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 57777775 69999999999999998775
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0034 Score=56.23 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=41.2
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
.+.|+|. .+..+++.+|.++|+ +||.|.++..-.+. ..||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~-~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLS-QFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHG-GGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHH-hcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4679996 789999999999998 99999998775442 36999999999999877643
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.97 E-value=0.005 Score=42.36 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=50.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCC-C-CcccEEEEEEccHHHHHHHHHHhCCCCCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQT-G-QIEGYGFIEFISRAGAERVLQTFNGTPMP 149 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 149 (303)
.+-+|.|+.||+.+|++++.+.++.+-.+........+.+ + ..-.-|||.|.+.++.....+..+|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4568999999999999998888876544322222221111 1 11246899999999999999999998863
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.0035 Score=56.09 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=42.2
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHH
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVL 140 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 140 (303)
..++|+|. .+..+++.+|.++|++||.|.++.+..++. -||.|||.+.+++..++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHH
Confidence 45799997 799999999999999999999998887542 59999999999988765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.30 E-value=0.074 Score=38.62 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=44.3
Q ss_pred cceEEEcCCCccCCHHHHHHHHhhcCCceEE-EEEec--------CCCC-----CcccEEEEEEccHHHHHHHHHHhCCC
Q 022077 81 IRTLWIGDLQYWMDETYLNTCFAHTGEVVAV-KVIRN--------KQTG-----QIEGYGFIEFISRAGAERVLQTFNGT 146 (303)
Q Consensus 81 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~--------~~~~-----~~~g~afv~f~~~~~a~~a~~~l~g~ 146 (303)
...|.|-+.|...+ ..+-+.|++||.|.+- .+.+. +.+. ....+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566777776665 5677889999998652 11110 0000 123578999999999999996 5998
Q ss_pred CCC
Q 022077 147 PMP 149 (303)
Q Consensus 147 ~~~ 149 (303)
.+.
T Consensus 85 ii~ 87 (132)
T 3p3d_A 85 VFN 87 (132)
T ss_dssp EET
T ss_pred EeC
Confidence 883
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.71 E-value=0.95 Score=41.18 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=44.7
Q ss_pred CceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 022077 173 DHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 237 (303)
Q Consensus 173 ~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 237 (303)
...++|+ ++..+...+|.+.|+ .||.+ +|+++.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 888899999999998 99954 5665544 369999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.66 E-value=1.8 Score=39.32 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=46.0
Q ss_pred CcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC
Q 022077 80 EIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (303)
Q Consensus 80 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 145 (303)
....++|+ ++..+...+|.++|+.||.+ +|..+-+. .|||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 34567776 88888899999999999964 56555443 799999999999999998864
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=82.14 E-value=8.8 Score=25.46 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCC-------ceeCCe
Q 022077 172 PDHTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNG-------VFCSTR 244 (303)
Q Consensus 172 ~~~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-------~~~~g~ 244 (303)
..+-+.|-|+|..+...++.-... ..|---.|..+ .|.|.|+|.+.++..-|+..|-+ .++.|.
T Consensus 11 qnclikiinipqgtlkaevvlavr-hlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVR-HLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHH-TTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hCcEEEEEecCCCceeeeeEEeeh-hcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 356788899999998888777775 67776666654 34599999999999999987722 235676
Q ss_pred eeEEee
Q 022077 245 PMRIGP 250 (303)
Q Consensus 245 ~l~v~~ 250 (303)
.+.|--
T Consensus 82 icdvis 87 (129)
T 4eyt_A 82 ICDVIS 87 (129)
T ss_dssp EEEEEC
T ss_pred eeeeee
Confidence 666643
No 404
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=73.01 E-value=7.5 Score=26.44 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=53.0
Q ss_pred CCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
.++..+.-+||.....+.||.-.+++.... ...|-..+.+|-.+|++.|+ +.-.-+.|+|-....+...
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellD-rss~~kSLrIlL~~~~~~~ 91 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLD-RSIHMKSLKILLVINGSTQ 91 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHH-HCSSCCSEEEEEEECCCCS
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHc-cCCcccceEEEEecCCCCc
Confidence 457889999999888888999887777521 27899999999999999876 4455667777666666443
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=65.60 E-value=21 Score=24.51 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=30.5
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEe----eCCCCCceeEEEEEeCCHHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVI----DRLTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~----~~~~~~~~g~afV~f~~~~~A~~A 232 (303)
...+..+|++.+...|+.-.++.++. ....|++.|||.| |+|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788889888876677644433332 2234566677755 6777776554
No 406
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=64.19 E-value=28 Score=23.02 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecccCCCC
Q 022077 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPATNKKTV 257 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 257 (303)
-.+..+.-++|..-..+.||.-.++....+ .-.|-..+.+|-.+|++.|+ ....-+.|+|-.......-
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~~~~~~ 87 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLLSQDRNL 87 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEECSSCC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhc-cCccccceEEEEEcCCccc
Confidence 457788999999988889999988877633 25788999999999999865 5556677787777665443
No 407
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=62.86 E-value=19 Score=24.77 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=29.6
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEE----eeCCCCCceeEEEEEeCCHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVV----IDRLTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 231 (303)
...+..+|++.+...|+.-.++.++ .....|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678888888887566664333222 22234566777755 777777654
No 408
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=62.74 E-value=13 Score=25.74 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=30.8
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEee----CCCCCceeEEEEEeCCHHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVID----RLTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~----~~~~~~~g~afV~f~~~~~A~~A 232 (303)
...+..+|++.+...|+.-.++.++.. -..|++.|||.| |+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467788888888766776444333322 234566777755 7788777653
No 409
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=58.51 E-value=33 Score=24.82 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=31.3
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeC----CCCCceeEEEEEeCCHHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~A 232 (303)
...+..||++.+...|+.-.++.++..- ..|++.|||.| |+|.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4678899999997678764443333222 34556677765 7777776643
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.40 E-value=26 Score=23.18 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=39.5
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
++..+....+..+|++.++..||. |..+..+.-. .| ..-|+|++..-.+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 344567789999999999866774 6666665543 22 34599999888887776554
No 411
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=57.11 E-value=40 Score=22.93 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=48.1
Q ss_pred CCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
-.+..+.-++|..-..+.||.-.++....+ .-.|-..+.+|-.+|++.|+ ....-+.|+|-..
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~ 108 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLL 108 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHH-HCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhc-cCccccceEEEEe
Confidence 457788999999998889999988887633 25788999999999999875 4445555565443
No 412
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=55.65 E-value=44 Score=22.44 Aligned_cols=63 Identities=6% Similarity=0.032 Sum_probs=48.4
Q ss_pred CCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeec
Q 022077 180 DLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPA 251 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 251 (303)
-.+.-+.-++|.....+.||.-.++....+ .-.|-..+.+|-.+|++.|+ ....-+.|+|-..
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLD-rs~~~kSLrIlL~ 97 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLD-RSIHMKSLKILLV 97 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHH-HCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhc-cCccccceEEEEe
Confidence 457788999999999889999988887633 26789999999999999865 4444555555443
No 413
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=52.66 E-value=24 Score=25.98 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeC----CCCCceeEEEEEeCCHHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDR----LTGRTKGYGFVRFGDESEQLRA 232 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~A 232 (303)
...+..||++.+...|+.-.++.++..- ..|.+.|||.| |+|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 4678888998888667774444433332 23456677765 6777776643
No 414
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=51.08 E-value=40 Score=20.65 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=41.4
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
.++.|.++.-.-....|.+.+. . ..|..+.+-.. .+.+.|+|++.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~-~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALE-E-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHH-H-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhc-c-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 4688889988888899999998 7 78887777433 56688998866666667665
No 415
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=49.59 E-value=12 Score=25.51 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHhhhCCCcceEEEEeeCC----CCCceeEEEEEeCCHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPSTKGAKVVIDRL----TGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~A~~ 231 (303)
...+..+|++.+...|+.-.++.++..-. .|++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45678888888775676644444443332 3456677755 555555544
No 416
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=46.65 E-value=25 Score=17.01 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 022077 7 GAVPPPP 13 (303)
Q Consensus 7 ~~~pppp 13 (303)
||+|+|+
T Consensus 3 PG~P~P~ 9 (26)
T 1wa7_B 3 PGMPTPP 9 (26)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 4444444
No 417
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.49 E-value=12 Score=23.84 Aligned_cols=59 Identities=7% Similarity=0.141 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHhhhCCCcc-----eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEeecc
Q 022077 184 DVTDYMLQETFRARYPSTK-----GAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFCSTRPMRIGPAT 252 (303)
Q Consensus 184 ~~~~~~l~~~f~~~~G~i~-----~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 252 (303)
.+...+|..++. .-+.|. .+.|. ..|.||+-... .|..++..|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~-~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIA-KIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHH-TSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHH-HccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 456667777776 444443 23442 23688887654 4677888899999999999988664
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.09 E-value=60 Score=24.56 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=27.9
Q ss_pred cCHHHHHHHH--hhhCCCcceEEEEeeCCCCCceeEEEEEeCCH
Q 022077 185 VTDYMLQETF--RARYPSTKGAKVVIDRLTGRTKGYGFVRFGDE 226 (303)
Q Consensus 185 ~~~~~l~~~f--~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 226 (303)
.+..+|++.| + .|..+. ++.+.+. ....|+|.|+|.+-
T Consensus 33 ~s~~~l~~~~~~~-~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 33 ESGSKLRDEYILR-GFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CCSHHHHHHHHHT-TCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred CCHHHHHHHHHhc-CCCCce-eEecccC--CCCceeEEEEecCC
Confidence 4567899977 7 788865 6666664 34689999999763
No 419
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.47 E-value=50 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=39.2
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
-++..++...+..+|++.++..||. |..|..+.-. .| ..-|||++....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHHh
Confidence 3444567889999999999866764 6666665543 22 33599999887777665444
No 420
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=37.62 E-value=53 Score=24.20 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=38.9
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
-++..++...+..+|++.++..||. |..|..+.-. .| ..-|||++....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHHh
Confidence 3444567788999999999866764 6666665543 22 33599999887777665444
No 421
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=36.15 E-value=47 Score=21.99 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=30.7
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEeecccC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~ 254 (303)
+|++++|..-...|+-+++|-|+|++. -.+++..+ +.+.|.|.+-..+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~-------fvI~~ikVieg~~GlFVaMPs~k 54 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA-------FVIHDLRVIEGNSGLFVAMPSKR 54 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCCcC
Confidence 477788877666788899999999753 12354443 2344666654433
No 422
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.67 E-value=56 Score=21.50 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=37.1
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 022077 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAM 233 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 233 (303)
++-.++...+..+|++.++..||. |..+..+.-. .+ ..-|+|++..-.+|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHHH
Confidence 344567889999999999866764 6666665543 22 345999998777665543
No 423
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=33.65 E-value=47 Score=24.57 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=37.5
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHH
Q 022077 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMT 234 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 234 (303)
++..++...+..+|++.++..||. |..|..+.-. .| ..-|||++....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 344567788899999998866764 6666665543 22 3459999988877766544
No 424
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=31.84 E-value=59 Score=22.17 Aligned_cols=48 Identities=6% Similarity=0.148 Sum_probs=30.9
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEeecccC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~ 254 (303)
+|++++|..-...|+-+++|-|+|++. -.+|+..+ +...|.|.+-..+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~-------fvI~dIkVieg~~GlFVaMPSrk 54 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE-------FVVHDIRVIDGNNGLFVAMPSKR 54 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCCcC
Confidence 577888877666788899999999763 12355443 3344666654433
No 425
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=36.80 E-value=11 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=31.1
Q ss_pred CHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEE--EEeCCHHHHHHHHHHhCCce
Q 022077 186 TDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGF--VRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 186 ~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~af--V~f~~~~~A~~A~~~l~g~~ 240 (303)
+++++.++.. +.+ +..+.+.+....|+ ..|.. =.|.+.++|.+|+..|-...
T Consensus 35 ~~~~l~~f~~-~~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 35 NYDNLNGWAK-KEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3455666665 555 34455554332333 23333 37899999999999886443
No 426
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.48 E-value=65 Score=22.17 Aligned_cols=48 Identities=6% Similarity=0.118 Sum_probs=31.2
Q ss_pred CcceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEeecccC
Q 022077 200 STKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMNGVFC--STRPMRIGPATNK 254 (303)
Q Consensus 200 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~ 254 (303)
+|++++|..-...|+-+++|-|+|++. -.+|+..+ +...|.|.+-..+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~-------FvI~dIKViEg~~GlFVaMPSrk 54 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA-------FVIHDLRVIEGNSGLFVAMPSKR 54 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEECCEEE
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE-------EEEeeEEEEECCCceEEECCCcC
Confidence 466777776666788899999999763 12455443 3345666665444
No 427
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.40 E-value=85 Score=23.30 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=38.4
Q ss_pred EEcCCCcccCHHHHHHHHhhhCCC-cceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHH
Q 022077 177 FVGDLAADVTDYMLQETFRARYPS-TKGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTE 235 (303)
Q Consensus 177 ~v~nl~~~~~~~~l~~~f~~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 235 (303)
++..++...+..+|++.++..||. |..|..+.-. |. ..-|||++....+|......
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~--~~-~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP--DG-EKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS--SS-CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcC--CC-ceEEEEEECCCCcHHHHHHh
Confidence 344567789999999999866764 6666665543 22 34599999887766555443
No 428
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.72 E-value=1.3e+02 Score=19.78 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=45.9
Q ss_pred CCcceEEEcCCCccCCHHHHHHHHhhcCCceEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhCC
Q 022077 79 GEIRTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVIRNKQTGQIEGYGFIEFISRAGAERVLQTFNG 145 (303)
Q Consensus 79 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 145 (303)
...|-+-|-|+|..+-..++.-.....|---.|..+. |.|.+.|.+.++.+.|+..|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 3457788899999999998887777777655555442 3699999999999999987643
No 429
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=27.05 E-value=95 Score=18.29 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=38.0
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeCC---HHHHHHHHHH
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFGD---ESEQLRAMTE 235 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~~---~~~A~~A~~~ 235 (303)
.++.|.++.-.-....|.+.+. ....|..+.+-.. .+-+.|+|.+ .++..+++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~-~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIA-KVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHH-TSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHh-cCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 3577888888777888999997 7777877777443 3347788743 4455555554
No 430
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.96 E-value=1.5e+02 Score=19.65 Aligned_cols=56 Identities=11% Similarity=-0.017 Sum_probs=37.8
Q ss_pred EEEcCCCcccCHHHHHHHHhhhCCCc--ceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 176 IFVGDLAADVTDYMLQETFRARYPST--KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 176 l~v~nl~~~~~~~~l~~~f~~~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
+.+-.++.+++-++|.+.+.+.|+-. ..+.+.+-.+.| -+|++.+.++-..|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHH
Confidence 44556788899888888777666642 224333332233 469999999999998854
No 431
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=25.91 E-value=1.1e+02 Score=18.30 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=40.4
Q ss_pred ceEEEcCCCcccCHHHHHHHHhhhCCCcceEEEEeeCCCCCceeEEEEEeC----CHHHHHHHHHH
Q 022077 174 HTIFVGDLAADVTDYMLQETFRARYPSTKGAKVVIDRLTGRTKGYGFVRFG----DESEQLRAMTE 235 (303)
Q Consensus 174 ~~l~v~nl~~~~~~~~l~~~f~~~~G~i~~~~i~~~~~~~~~~g~afV~f~----~~~~A~~A~~~ 235 (303)
.++.|.++.-.-....|.+.+. ....|.++.+-.. .+.+.|+|+ +.++..+++..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~-~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALM-NVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH-TSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHh-cCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3577888887777888999997 7777877777544 345889985 45666777665
No 432
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=25.38 E-value=38 Score=21.03 Aligned_cols=14 Identities=29% Similarity=0.083 Sum_probs=11.2
Q ss_pred CCCcEEEEeeeccc
Q 022077 280 PNNTTVSTVVIFNI 293 (303)
Q Consensus 280 ~~~~~~~~~~~~~~ 293 (303)
..||++||++.+.-
T Consensus 3 ~~NttVyVRlPg~R 16 (69)
T 4hpq_A 3 SENTIVYVRVAGRA 16 (69)
T ss_dssp SSSCEEEEECSSCC
T ss_pred CCCeEEEEEecCCC
Confidence 36899999988754
No 433
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.32 E-value=1.4e+02 Score=19.19 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCCcccCHHHHHHHHhhhCCCc------ceEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 022077 180 DLAADVTDYMLQETFRARYPST------KGAKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEM 236 (303)
Q Consensus 180 nl~~~~~~~~l~~~f~~~~G~i------~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 236 (303)
-++.+++-.+|.+-..++++.. ..+++-...+.| .||...+-++-.-|+..+
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdG-----D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDG-----DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTT-----EEEECCSTTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCC-----CEEEEcCHHHHHHHHHHH
Confidence 4567777777776665566632 222332221233 799999999999998865
No 434
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=23.05 E-value=1.3e+02 Score=20.72 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.2
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 213 GRTKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
+....-.-+.|++.|+|.+-.+. ||..
T Consensus 48 ~D~~~qv~L~F~skE~AiayAek-~G~~ 74 (106)
T 2jya_A 48 SDMKQQVKLTFETQEQAEAYAQR-KGIE 74 (106)
T ss_dssp CCSEEEEEEEESSHHHHHHHHHH-HTCE
T ss_pred CCccccceEecCCHHHHHHHHHH-cCCE
Confidence 44455567999999999988775 6644
No 435
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.96 E-value=32 Score=25.01 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHhhhCCC-cceEEEEeeC----CCCCceeEEEEEeCCHHHHHH
Q 022077 183 ADVTDYMLQETFRARYPS-TKGAKVVIDR----LTGRTKGYGFVRFGDESEQLR 231 (303)
Q Consensus 183 ~~~~~~~l~~~f~~~~G~-i~~~~i~~~~----~~~~~~g~afV~f~~~~~A~~ 231 (303)
...+..||++.+...|+. -.++.++..- ..|++.|||.| |+|.+.|.+
T Consensus 38 aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 38 ANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 357889999999767776 4443333332 24567778865 677766543
No 436
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.74 E-value=63 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=18.2
Q ss_pred cccEEEEEEccHHHHHHHHHHh
Q 022077 122 IEGYGFIEFISRAGAERVLQTF 143 (303)
Q Consensus 122 ~~g~afv~f~~~~~a~~a~~~l 143 (303)
..||.||++...++...+++.+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTC
T ss_pred cCCEEEEEEecchhHHHHHHCC
Confidence 7799999999998887777543
No 437
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.76 E-value=1.3e+02 Score=22.25 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=26.0
Q ss_pred cCHHHHHHHHhhhCCCcc-eE--EEEeeCCCCCceeEEEE
Q 022077 185 VTDYMLQETFRARYPSTK-GA--KVVIDRLTGRTKGYGFV 221 (303)
Q Consensus 185 ~~~~~l~~~f~~~~G~i~-~~--~i~~~~~~~~~~g~afV 221 (303)
+++++|+++-. ..|.+. .+ ++..+..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~-~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAAN-KQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHH-TTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHH-hCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 68899999997 888874 34 44455347888877765
No 438
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.29 E-value=70 Score=21.98 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhCCce
Q 022077 215 TKGYGFVRFGDESEQLRAMTEMNGVF 240 (303)
Q Consensus 215 ~~g~afV~f~~~~~A~~A~~~l~g~~ 240 (303)
-+||-|||=.+..+..+|+..+.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 49999999999999999987665443
No 439
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.02 E-value=79 Score=25.77 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=25.0
Q ss_pred ceEEEcCCCccCCHHHHHHHHhhcCCceEEEEE
Q 022077 82 RTLWIGDLQYWMDETYLNTCFAHTGEVVAVKVI 114 (303)
Q Consensus 82 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~ 114 (303)
..+.|+|||+.++..-|..++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46789999999999999999987 555444333
Done!