BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022078
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 321 bits (822), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 151/218 (69%), Positives = 180/218 (82%), Gaps = 1/218 (0%)
Query: 45 QISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI 104
+++AKFELKPPPYP N LEP MS+ TLE+HWGKHHR YVENL KQ+VGTELDG SLE++I
Sbjct: 14 KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEII 73
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ +YNKG++LP FNNAAQ WNH+FFW IERDFGSF++FL+EFK
Sbjct: 74 VTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFK 133
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLT 223
+AAATQFGSGWAWLAYKA++L+ +NA NP +++D KLVV+KSPNAVNPLVW Y PLLT
Sbjct: 134 AAAATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLT 193
Query: 224 IDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
IDVWEHAY+LDF+NRRP+YISVFMDKLVSW+ VS RLE
Sbjct: 194 IDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLE 231
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 128/212 (60%), Gaps = 18/212 (8%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
F +P P+ P ALEP+ MS TLE+H+GKHH+ YV+NLNK TEL SLEDVI +Y
Sbjct: 2 FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTY 61
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+ FNNAAQ WNH FFW I FGS+D F +FK+AAA
Sbjct: 62 GDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAA 121
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 228
TQFGSGWAWL +A L V K+ NA NPLV PLLTIDVWE
Sbjct: 122 TQFGSGWAWLVLEAGTLK-----------------VTKTANAENPLVHGQVPLLTIDVWE 164
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
HAY+LD++NRRP++I F+++LV+W+ V+K L
Sbjct: 165 HAYYLDYQNRRPDFIDNFLNQLVNWDFVAKNL 196
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 119/212 (56%), Gaps = 22/212 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS- 59
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+G + FNNAAQ WNH F+W I FGSF F +F AA
Sbjct: 60 -EGGV---FNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 228
FGSGW WL V N+ D KL +V + NA PL D +PLLT+DVWE
Sbjct: 116 KNFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWE 159
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
HAY++D+ N RP Y+ F LV+WE V+K L
Sbjct: 160 HAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 190
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 119/212 (56%), Gaps = 22/212 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS- 59
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+G + FNNAA+ WNH F+W I FGSF F +F AA
Sbjct: 60 -EGGV---FNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 228
FGSGW WL V N+ D KL +V + NA PL D +PLLT+DVWE
Sbjct: 116 KNFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWE 159
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
HAY++D+ N RP Y+ F LV+WE V+K L
Sbjct: 160 HAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 190
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 118/212 (55%), Gaps = 22/212 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
FEL PY +AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S
Sbjct: 1 SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS- 59
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+G + FNNAA WNH F+W I FGSF F +F AA
Sbjct: 60 -EGGV---FNNAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 228
FGSGW WL V N+ D KL +V + NA PL D +PLLT+DVWE
Sbjct: 116 KNFGSGWTWL--------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWE 159
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
HAY++D+ N RP Y+ F LV+WE V+K L
Sbjct: 160 HAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 190
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 116/212 (54%), Gaps = 22/212 (10%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL P PY +AL+PH+SK+TLE+H KHH YV NLN + GTE +G +LE+++ S
Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I FGSFD+F EEF +
Sbjct: 60 SGGI---FNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVG 116
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEH 229
FGSGW WL KA D L + + A PL +PLLT DVWEH
Sbjct: 117 TFGSGWGWLVKKA----------------DGSLALASTIGAGCPLTIGDTPLLTCDVWEH 160
Query: 230 AYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
AY++D+ N RP Y+ F + LV+W V+++ E
Sbjct: 161 AYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 191
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 119/214 (55%), Gaps = 23/214 (10%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 106
+ KFEL PY +ALE +SK+T+EYH+GKHH+ YV NLN + GTE DG +LE+++
Sbjct: 3 AMKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKT 62
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
S N G FNNAAQ +NH F+W IE FGS + F E+F A
Sbjct: 63 S-NGG----IFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKA 116
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
A FGSGWAWL + KL +V + NA PL + PLLT DV
Sbjct: 117 AIATFGSGWAWLV----------------KNTEGKLEIVTTSNAGCPLTENKKPLLTFDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
WEHAY++D+ N RP Y+ D +V+W+ VS++
Sbjct: 161 WEHAYYIDYRNARPKYVEALWD-IVNWQFVSEQF 193
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 114/211 (54%), Gaps = 24/211 (11%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
FEL P PY +AL+PH+SK+TLEYH KHH YV NLN + GT E +G +LE+ IV
Sbjct: 2 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEE--IVKS 59
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
+ G + FNNAAQ WNH F+W I FGSFD+F EEF +
Sbjct: 60 SSGGI---FNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 228
FGSGWAWL + D L + + A PL +PLLT DVWE
Sbjct: 117 GTFGSGWAWLV-----------------KADGSLALCSTIGAGAPLTSGDTPLLTCDVWE 159
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
HAY++D+ N RP Y+ F + LV+W V++
Sbjct: 160 HAYYIDYRNLRPKYVEAFWN-LVNWAFVAEE 189
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 117/212 (55%), Gaps = 22/212 (10%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY NALEPH+S++TLEYH GKHHRAYV LNK I GT + LE++I S
Sbjct: 3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPFEKEPLEEIIRKS-- 60
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I++ FGS ++F F +A
Sbjct: 61 DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANN 117
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEH 229
FGSGWAWL + + KL V+ + NA NP+ PL+T DVWEH
Sbjct: 118 HFGSGWAWLV----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEH 161
Query: 230 AYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
AY++D N RP Y++ F ++V+W+ V K +
Sbjct: 162 AYYIDTRNDRPKYVNNFW-QVVNWDFVMKNFK 192
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 120/220 (54%), Gaps = 22/220 (10%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM---SLEDV 103
+ FEL PY LEP++S L+ H+ HH+ YV+ LNK +VGTE +G+ SL D+
Sbjct: 20 GSMFELSDLPYE--GLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDI 77
Query: 104 IIVSYNKGNM-LPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
++ ++N G+ FNNAAQ WNH+F+W IE FGS + F
Sbjct: 78 VVKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNA 137
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PL 221
F ++ QFGSGW WL Y E K L VV + NA +PL+ PL
Sbjct: 138 FTTSGLGQFGSGWVWLVY---------------DEDAKALKVVSTANADSPLLTQGQLPL 182
Query: 222 LTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
T+DVWEHAY+LD+ N R YI VF++ L++W+ V RLE
Sbjct: 183 ATMDVWEHAYYLDYLNLRKKYIDVFLEHLLNWDFVLGRLE 222
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 116/213 (54%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
FEL P+ +ALEPH+S +TL+YH GKHH YV LN I GTE +G +LE++I S
Sbjct: 2 SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS- 60
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
G + FNNAAQ WNH F+W I+ FGSF+ F +F +A
Sbjct: 61 -TGGV---FNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAI 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVW 227
FGS W WL V NA D L +V + NA PL + +PLLT+D+W
Sbjct: 117 NNFGSSWTWL--------VKNA--------DGSLAIVNTSNAATPLTDEGVTPLLTVDLW 160
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
EHAY++DF N RP+Y+ F LV+W V + L
Sbjct: 161 EHAYYIDFRNVRPDYMGAFW-SLVNWSFVEENL 192
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 115/209 (55%), Gaps = 22/209 (10%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNK 110
EL PY +AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSE 61
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
G + FNNA Q NH ++ I++ FGSF++F EEF +A T
Sbjct: 62 GGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHA 230
FGSGW WLA AN KL + K PNA NP+ +PLLT DVWEHA
Sbjct: 119 FGSGWVWLASDAN----------------GKLSIEKEPNAGNPVRKGLNPLLTFDVWEHA 162
Query: 231 YFLDFENRRPNYISVFMDKLVSWEVVSKR 259
Y+L ++NRR +++ +V W++V R
Sbjct: 163 YYLTYQNRRADHLKDLW-SIVDWDIVESR 190
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 114/220 (51%), Gaps = 24/220 (10%)
Query: 42 VYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIV-GTELDGMSL 100
+ ++ F+ P PY NALEPHMS +TL YH KHH+ YV+ LN + + +L
Sbjct: 25 CFSSVTGPFQCPPLPYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTL 84
Query: 101 EDVIIVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
E +I K PFN AAQ +NH FF+ I RDFGSF++F
Sbjct: 85 EQIIKTETGK-----PFNQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFK 139
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSP 220
E+F +AA FGSGW WL D KL +V+ +A NP+ +P
Sbjct: 140 EDFSAAAVGHFGSGWVWLI-----------------ADDGKLKIVQGHDAGNPIRESKTP 182
Query: 221 LLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
L+ IDVWEHAY++D+ N R Y+ + + LV+W+ V+ +
Sbjct: 183 LMNIDVWEHAYYIDYRNARAQYVKNYWN-LVNWDFVNDNV 221
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
FEL PY +ALEPH+SK+TLE+H GKHH YV LN I GT+ + SLE+++ S
Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVCSS-- 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ WNH F+W I +GSFD F E A
Sbjct: 60 DGGV---FNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVN 116
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVWE 228
FGS W WL A D L +V + NA PL D +P+LT+D+WE
Sbjct: 117 NFGSSWTWLVKLA----------------DGSLDIVNTSNAATPLTDDGVTPILTVDLWE 160
Query: 229 HAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
HAY++D+ N RP+Y+ F LV+WE +
Sbjct: 161 HAYYIDYRNVRPDYLKGFW-SLVNWEFANANF 191
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 114/209 (54%), Gaps = 22/209 (10%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNK 110
EL PY +AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSE 61
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
G + FNNA Q NH ++ I++ FGSF++F EEF +A T
Sbjct: 62 GGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTL 118
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHA 230
FGSGW WLA AN KL + K PNA NP+ +PLL DVWEHA
Sbjct: 119 FGSGWVWLASDAN----------------GKLSIEKEPNAGNPVRKGLNPLLGFDVWEHA 162
Query: 231 YFLDFENRRPNYISVFMDKLVSWEVVSKR 259
Y+L ++NRR +++ +V W++V R
Sbjct: 163 YYLTYQNRRADHLKDLW-SIVDWDIVESR 190
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIV 106
AK EL PY +ALEPH K+T+ H KHH Y+ NLN + G EL S+E+++
Sbjct: 11 AKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVA- 69
Query: 107 SYNKGNMLPPF------NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
N +P NN NH FFW IE FGSFD F
Sbjct: 70 ---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFK 126
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSP 220
EEF A AT+FGSGWAWL V+N +L V +PN +PL +P
Sbjct: 127 EEFAKAGATRFGSGWAWLV-------VNNG----------ELEVTSTPNQDSPLTEGKTP 169
Query: 221 LLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
++ +DVWEHAY+L+++NRRP+YI F + +V W KR +
Sbjct: 170 VIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQ 209
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 119/227 (52%), Gaps = 36/227 (15%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI--- 104
A + L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 2 AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 61
Query: 105 --IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDR 158
+ + KG + NNA NH FW I FGSFD
Sbjct: 62 DRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDA 118
Query: 159 FLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 218
F ++F+ AA T+FGSGWAWL KD KL VV + N NPL+ +
Sbjct: 119 FKQKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEA 161
Query: 219 ------SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+P+L +DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 162 IAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 207
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 118/225 (52%), Gaps = 36/225 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI----- 104
+ L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 23 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 82
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDRFL 160
+ + KG + NNA NH FW I FGSFD F
Sbjct: 83 VPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFK 139
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY-- 218
++F+ AA T+FGSGWAWL KD KL VV + N NPL+ +
Sbjct: 140 QKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEAIA 182
Query: 219 ----SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+P+L +DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 183 GVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 226
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 118/225 (52%), Gaps = 36/225 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI----- 104
+ L PY +ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I
Sbjct: 3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDR 62
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXX----XXXXIERDFGSFDRFL 160
+ + KG + NNA NH FW I FGSFD F
Sbjct: 63 VPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFK 119
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY-- 218
++F+ AA T+FGSGWAWL KD KL VV + N NPL+ +
Sbjct: 120 QKFEDAAKTRFGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEAIA 162
Query: 219 ----SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+P+L +DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 163 GVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 206
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 23/206 (11%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T L SL D++ K +
Sbjct: 18 YALNALSPHISEETLSFHYNKHHAGYVNKLNGLIKDTPLANKSLTDIL-----KESTGAI 72
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F ++F + FGSGW
Sbjct: 73 FNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWG 132
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDF 235
WLA K+ KLV++++ +A NP+ + P+LT DVWEHAY++D+
Sbjct: 133 WLAL----------------NKNNKLVILQTHDAGNPIKENTGIPILTCDVWEHAYYIDY 176
Query: 236 ENRRPNYISVFMDKLVSWEVVSKRLE 261
N R +Y+ + + LV+W ++ L+
Sbjct: 177 RNDRLSYVKAWWN-LVNWNFANENLK 201
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 23/206 (11%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL D++ K +
Sbjct: 9 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAI 63
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F E+F + FGSGW
Sbjct: 64 FNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWG 123
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDF 235
WLA N KLV++++ +A NP+ + P+LT D+WEHAY++D+
Sbjct: 124 WLALNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDY 167
Query: 236 ENRRPNYISVFMDKLVSWEVVSKRLE 261
N R +Y+ + + LV+W ++ L+
Sbjct: 168 RNDRASYVKAWWN-LVNWNFANENLK 192
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 23/206 (11%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL D++ K +
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAI 64
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F E+F + FGSGW
Sbjct: 65 FNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWG 124
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDF 235
WLA N KLV++++ +A NP+ + P+LT D+WEHAY++D+
Sbjct: 125 WLALNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDY 168
Query: 236 ENRRPNYISVFMDKLVSWEVVSKRLE 261
N R +Y+ + + LV+W ++ L+
Sbjct: 169 RNDRASYVKAWWN-LVNWNFANENLK 193
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 117/212 (55%), Gaps = 21/212 (9%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IV 106
+EL PY +ALEPH+ K+T+ H KHH YV NLNK + G T L S+E+++ +
Sbjct: 3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLD 62
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
S + NN NH+ FW I FGSFD+F E+F +A
Sbjct: 63 SVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAA 122
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
AA +FGSGWAWL V+N KL + +PN +PL +P+L +DV
Sbjct: 123 AAGRFGSGWAWLV-------VNNG----------KLEITSTPNQDSPLSEGKTPILGLDV 165
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSK 258
WEHAY+L+++NRRP+YIS F + +V+W+ V++
Sbjct: 166 WEHAYYLNYQNRRPDYISAFWN-VVNWDEVAR 196
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 57 YPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPP 116
Y NAL PH+S++TL +H+ KHH YV LN I T SL +++ K +
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIM-----KESTGAI 64
Query: 117 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 176
FNNAAQ WNH F+W I+ DFGSF+ F EF + FGSGW
Sbjct: 65 FNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWG 124
Query: 177 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDF 235
WL N KLV++++ +A NP+ + P+LT D+WEHAY++D+
Sbjct: 125 WLVLNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDY 168
Query: 236 ENRRPNYISVFMDKLVSWEVVSKRLE 261
N RP+Y+ + + LV+W ++ L+
Sbjct: 169 RNDRPSYVKAWWN-LVNWNFANENLK 193
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 22/212 (10%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYN 109
F L+ P+ +++ +S ++H GKHH+ YV NLN I GT+ + SL I++ +
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSL--FAILTKS 59
Query: 110 KGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAAT 169
G + FNNAAQ +NH+F+W +E+DFGS ++F E+F +A T
Sbjct: 60 SGGV---FNNAAQIYNHDFYWDCLSPKATALSDELKGA-LEKDFGSLEKFKEDFIKSATT 115
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEH 229
FGSGW W AY N+D +K+ ++++ NA P+ PLL +DVWEH
Sbjct: 116 LFGSGWNWAAY-----NLDT----------QKIEIIQTSNAQTPVTDKKVPLLVVDVWEH 160
Query: 230 AYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
AY++D +N RP Y+ F ++W VS+ E
Sbjct: 161 AYYIDHKNARPVYLEKFYGH-INWHFVSQCYE 191
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 111/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT--- 58
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAYFL F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYFLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 21/208 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--I 105
KF++KP PY +ALEP++ K+T++ H KH++AYV+ LN + EL SL +++ +
Sbjct: 5 KFKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNL 64
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKS 165
S K NNA A+NH+FF+ I+RDFGSF++F +EF+
Sbjct: 65 DSLPKDIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQK 123
Query: 166 AAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTID 225
+A FGSGWAWL + KD KL ++ +PN +P+ + +P++ +D
Sbjct: 124 SALDVFGSGWAWLV----------------ATKDGKLSIMTTPNQDSPVSKNLTPIIGLD 167
Query: 226 VWEHAYFLDFENRRPNYISVFMDKLVSW 253
VWEHAY+L ++NRR YI + + +V+W
Sbjct: 168 VWEHAYYLKYQNRRNEYIDNWFN-VVNW 194
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT--- 58
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANLDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT--- 58
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANHDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H KHH+ +V N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELIT--- 58
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 19/202 (9%)
Query: 60 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 119
+ ++P MS LE H+ KHH AYV+ LN +G +G ++E++I+ + FN
Sbjct: 44 DGIQPVMSPRQLELHYSKHHSAYVDKLN--TLGKGYEGKTIEEIILATTGINESKVMFNQ 101
Query: 120 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 179
AAQ +NH FFW I + FGS D F+ F+ A FGSGW WL
Sbjct: 102 AAQHFNHSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWLC 160
Query: 180 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 239
V+P + K+L++ + NA PL P+ T DVWEHAY+ DFENRR
Sbjct: 161 -----------VDP----QTKELLIDSTSNAGCPLTSGLRPIFTADVWEHAYYKDFENRR 205
Query: 240 PNYISVFMDKLVSWEVVSKRLE 261
+Y+ ++V WE V E
Sbjct: 206 ADYLKELW-QIVDWEFVCHMYE 226
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 102/199 (51%), Gaps = 17/199 (8%)
Query: 60 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 119
+ P S +E H+ KHH+AYV+ LN + GT DG S+E++I+ N FN
Sbjct: 53 DGCAPVFSPRQMELHYTKHHKAYVDKLN-ALAGTTYDGKSIEEIILAVANDAEKKGLFNQ 111
Query: 120 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 179
AAQ +NH F++ + FGS ++F + F A FGSGW WL
Sbjct: 112 AAQHFNHTFYFRCITPNGKAMPKSFESA-VTAQFGSVEQFKDAFVQAGVNNFGSGWTWLC 170
Query: 180 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 239
VD PS K++ LV+ + NA PL P+L +DVWEHAY+ DFENRR
Sbjct: 171 -------VD------PSNKNQ-LVIDNTSNAGCPLTKGLRPVLAVDVWEHAYYKDFENRR 216
Query: 240 PNYISVFMDKLVSWEVVSK 258
P+Y+ ++ WE V+K
Sbjct: 217 PDYLKEIWS-VIDWEFVAK 234
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSY 108
+ L PY +ALEPH K T+E H K H+ YV N N + E + +E++I
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELIT--- 58
Query: 109 NKGNMLPP------FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEE 162
K + LP NNA NH FW IERDFGS D F E
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 163 FKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--- 219
F+ AAA++FGSGWAWL K + KL VV + N +PL+ +
Sbjct: 116 FEKAAASRFGSGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGA 158
Query: 220 ---PLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
P++ +DVWEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 159 SGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 113/215 (52%), Gaps = 21/215 (9%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI-- 104
AKFEL PY +ALEP + K+T+ H KHH YV LN + G E L SL D+I
Sbjct: 1 AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISN 60
Query: 105 IVSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ + + NN NH FW I +GSF++F EEF
Sbjct: 61 LDAVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFA 120
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
+AAA +FGSGWAWL V+N ++ ++ +P NPL+ P+L +
Sbjct: 121 AAAAGRFGSGWAWLV-------VNNG----------EIEIMSTPIQDNPLMEGKKPILGL 163
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
DVWEHAY+L ++N+RP+YIS F + +V+W+ V+ +
Sbjct: 164 DVWEHAYYLKYQNKRPDYISAFWN-VVNWDEVAAQ 197
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVS 107
F + P P+ + L +SK+ + +H+ KHH YV LN L S+E++I
Sbjct: 3 FSIPPLPWGYDGLAAKGISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEIIRTE 62
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
KG P FN AAQ +NH F+W I FGSF +F EEF +AA
Sbjct: 63 --KG---PIFNLAAQIFNHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV-WDYSPLLTIDV 226
FGSGWAWL KKL V ++ +A PL D P+LT DV
Sbjct: 118 VGHFGSGWAWLVQDTTT---------------KKLKVFQTHDAGCPLTEADLKPILTCDV 162
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWE 254
WEHAY++D++N RP Y+ F + +V+W+
Sbjct: 163 WEHAYYIDYKNDRPAYVQTFWN-VVNWD 189
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 104/212 (49%), Gaps = 20/212 (9%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IV 106
F+L YP ALEPH+ T+E H KHH AYV NLN + L G+ +E ++ +
Sbjct: 4 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLA 63
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
+ + NN NH FW I+ FG F E+ A
Sbjct: 64 ALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQA 123
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
A +FGSGWAWL +PF KL V+ +PN NP++ ++P++ IDV
Sbjct: 124 AMGRFGSGWAWLV-----------KDPF-----GKLHVLSTPNQDNPVMEGFTPIVGIDV 167
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSK 258
WEHAY+L ++NRR +Y+ + +++W+V +
Sbjct: 168 WEHAYYLKYQNRRADYLQAIWN-VLNWDVAEE 198
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 51 ELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVI--IVS 107
EL P PY +ALE + +T++ H KHH AYV NLN + EL S+E ++ + S
Sbjct: 39 ELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNS 98
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ NN NH FW I + FGSF+ F ++F A
Sbjct: 99 VPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAG 158
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVW 227
+FGSGW WL NP +L VV +PN NP++ P++ DVW
Sbjct: 159 GDRFGSGWVWLVR-----------NP-----QGQLQVVSTPNQDNPIMEGSYPIMGNDVW 202
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
EHAY+L ++NRRP Y++ + + +V+W +++R +
Sbjct: 203 EHAYYLRYQNRRPEYLNNWWN-VVNWSEINRRTQ 235
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 50 FELKPPPYPPNALEPH-MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVS 107
F + P P+ + L +SK + H+ KHH+ YV LN + L S+E++I
Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTE 61
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
KG P FN AAQ +NH F+W I FGSF +F EEF + A
Sbjct: 62 --KG---PIFNLAAQIFNHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVA 116
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLTIDV 226
FGSGWAWL N KL V ++ +A PL + PLLT DV
Sbjct: 117 VGHFGSGWAWLVKDTN---------------SGKLKVYQTHDAGCPLTEPNLKPLLTCDV 161
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
WEHAY++D++N R Y+ F + +V+W+ V ++L
Sbjct: 162 WEHAYYVDYKNDRAAYVQTFWN-VVNWKNVERQL 194
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII---- 105
+EL PYP +ALEPH+S++ L H KHH+AYV+ N + + S DV I
Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAAL 68
Query: 106 --VSYNKGNMLPPFNNAAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLE 161
+S++ G + H FFW IE+DFGSF+RF +
Sbjct: 69 KELSFHVGGYVL----------HLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRK 118
Query: 162 EFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPL 221
EF AA + GSGWA L Y ++ +L +++ ++ + L
Sbjct: 119 EFSQAAISAEGSGWAVLTY---------------CQRTDRLFIMQVEKHNVNVIPHFRIL 163
Query: 222 LTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
L +DVWEHAY++D+ N RP+Y+ F + +V+W+ V KR E
Sbjct: 164 LVLDVWEHAYYIDYRNVRPDYVEAFWN-IVNWKEVEKRFE 202
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAYFL ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYFLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPL--VWDYSPLLTIDV 226
GSGW WL + R L + PNA +PL PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKER---------------GHLQIAACPNA-DPLQGTTGLIPLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 56 PYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLP 115
PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQTALQPAL 64
Query: 116 PFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGW 175
FN NH FW I+RDFGSFD+F E+ +A+ GSGW
Sbjct: 65 KFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGW 123
Query: 176 AWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFL 233
WL + R L + N P + L+ PLL IDVWEHAY+L
Sbjct: 124 GWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYL 167
Query: 234 DFENRRPNYISVFMDKLVSWEVVSKR 259
++N RP+Y+ + +++WE V++R
Sbjct: 168 QYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 58
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 59 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 117
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 118 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 161
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 162 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 193
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANRLNVDNAVNPF--PSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R ++ A P P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNNDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA- 56
Query: 109 NKGNMLPPFN-NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ + P N NH FW I+RDFGSFD+F E+ +A+
Sbjct: 57 -QIALQPALKANGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 168 ATQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTID 225
GSGW WL + R L + N P + L+ PLL ID
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGID 159
Query: 226 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
VWEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 160 VWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA- 56
Query: 109 NKGNMLPPFN-NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
+ + P N NH FW I+RDFGSFD+F E+ +A+
Sbjct: 57 -QIALQPALKLNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAAS 115
Query: 168 ATQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTID 225
GSGW WL + R L + N P + L+ PLL ID
Sbjct: 116 VGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGID 159
Query: 226 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
VWEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 160 VWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
W+HAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WDHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAHVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K+H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAYFL ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYFLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 21/213 (9%)
Query: 50 FELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IV 106
F+L Y + LEP++ +TL H GKHH YV NLN + +EL SLE+++ +
Sbjct: 13 FQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLE 72
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSA 166
+ K + NN + H FW I+ F +FD ++ A
Sbjct: 73 TLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKA 132
Query: 167 AATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
A ++FGSG+ WL ++L V+ +PN PL PLL IDV
Sbjct: 133 AISRFGSGYGWLVLDG-----------------EELSVMSTPNQDTPLQEGKIPLLVIDV 175
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++NRRP +++ + V+W+ V+++
Sbjct: 176 WEHAYYLKYQNRRPEFVTNWW-HTVNWDRVNEK 207
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
W HAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WAHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAVVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKQHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K+H AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAAVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAANVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H K H AYV NLN V E +L + +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKVHAAYVNNLN---VTEEKYQEALAKGDVTAQ 58
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 59 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 117
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 118 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 161
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 162 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 193
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 96/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH AYV NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
EHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 AEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSG+ WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGFGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHAY+L ++N RP+Y+ + +++WE V++R
Sbjct: 161 WEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 92/213 (43%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P ALEPH++ ++ H KHH A+V NLN V E +L + +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKXQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHA L +N RP+ + + +++WE V++R
Sbjct: 161 WEHAXXLQXKNVRPDXLKAIWN-VINWENVTER 192
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L PY LEP +S + ++ H KHH YV NLN+ +E+ + +
Sbjct: 2 KHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAV 50
Query: 109 NKGNM-----LPP---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
+KGN+ L P FN NH FW I+ DFGS D
Sbjct: 51 SKGNVKEAIALQPALKFNGGGHI-NHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQ 108
Query: 161 EEFKSAAATQFGSGWAWLAY--KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 218
++ ++ GSGW WL Y K L V N P E LV
Sbjct: 109 KQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLV--------------- 153
Query: 219 SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
PL IDVWEHAY+L ++N RP+Y++ K+ +W+ VS+R
Sbjct: 154 -PLFGIDVWEHAYYLQYKNVRPDYVNAIW-KIANWKNVSERF 193
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 91/213 (42%), Gaps = 23/213 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P ALEPH++ ++ H KHH A V NLN V E +L + +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKXQEALAKGDVTAQ 57
Query: 109 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 168
FN NH FW I+RDFGSFD+F E+ +A+
Sbjct: 58 IALQPALKFNGGGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV 116
Query: 169 TQFGSGWAWLAYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDV 226
GSGW WL + R L + N P + L+ PLL IDV
Sbjct: 117 GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDV 160
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
WEHA L +N RP+ + + +++WE V++R
Sbjct: 161 WEHAXXLQXKNVRPDXLKAIWN-VINWENVTER 192
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 56 PYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLP 115
PY ALEP +S T+++H+ KHH+ Y++ L G ++L+ ++ + ++
Sbjct: 85 PYGLEALEPVISAATVDFHYNKHHQGYIQKL-LDATGLPESRINLKSLVTLGPDRAGE-N 142
Query: 116 PFNNAAQAWNHEFFWXXXXXXXXXXXXX--XXXXXIERDFGSFDRFLEEFKSAAATQFGS 173
FN A Q +NH +W I +G+ D E F A FGS
Sbjct: 143 VFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGS 202
Query: 174 GWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--PLLTIDVWEHAY 231
GW WL + ++++L +V + +A +PL D PL T DVWEHAY
Sbjct: 203 GWIWLVWDT---------------RERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAY 247
Query: 232 FLDFENRRPNYISVFMDKLVSWEVVSKRL 260
+LD+++ R Y++ + L++WE L
Sbjct: 248 YLDYQHDRAAYLTRWW-SLINWEFADSNL 275
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
++EL P PY +ALEP +S +TL YH KHH YV N + E L+G L D+ +
Sbjct: 18 RYELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNG-QLTDIDVR 76
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXX--XIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + FGSFD+F + F
Sbjct: 77 AVSRD---FEFNYGGHIL-HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFG 132
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
AA G GWA LAY P D +++ V+ N N + + PLL +
Sbjct: 133 DAAKNVEGVGWAILAYD-------------PVTGDLRILQVEKHN--NVVTTNLIPLLAV 177
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
DV+EHAY++D+ N R Y+ + D L++W+ V R +
Sbjct: 178 DVFEHAYYIDYRNDRAKYVDSWWD-LINWDDVEARYQ 213
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 95/220 (43%), Gaps = 39/220 (17%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K L P+ LEP +S + ++ H KHH YV NLN+ +E+ + +
Sbjct: 2 KHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAV 50
Query: 109 NKGNM-----LPP---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFL 160
+KGN+ L P FN NH FW I+RDFGS D
Sbjct: 51 SKGNLKEAIALQPALKFNGGGHI-NHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQ 108
Query: 161 EEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSP 220
+ GSGW WL Y +KDK L + N +PL P
Sbjct: 109 KRLSDITIAVQGSGWGWLGY---------------CKKDKILKIATCANQ-DPLE-GMVP 151
Query: 221 LLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
L IDVWEHAY+L ++N RP+Y+ K+ +W+ +S+R
Sbjct: 152 LFGIDVWEHAYYLQYKNVRPDYVHAIW-KIANWKNISERF 190
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
++EL P PY NALEP++ ++ ++ H KHH YV+ N + E L G DV V
Sbjct: 6 RYELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAV 65
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ FN A H FW IE+ FG F++F F
Sbjct: 66 MRDFS-----FNYAGHIM-HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFS 119
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
+AA T G GW LA+ P ++ +++ V+ N + + P+L I
Sbjct: 120 AAAKTVEGVGWGVLAFD-------------PLTEELRILQVEKHNVL--MTAGLVPILVI 164
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
DVWEHAY+L ++N R +Y+ + + +V+W+ V KRLE
Sbjct: 165 DVWEHAYYLQYKNDRGSYVENWWN-VVNWDDVEKRLE 200
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVI 104
+ ++ L P PY NALEP++S + ++ H KHH+ YV N + E G + D+
Sbjct: 15 TKRYTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIR 74
Query: 105 IVSYN-----KGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFD 157
V + G++L H FW I + FGSF+
Sbjct: 75 AVLRDLSFHLNGHIL-----------HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFE 123
Query: 158 RFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD 217
+F EEF AA G GWA L Y+ P E+ ++ ++ N ++ D
Sbjct: 124 KFKEEFSQAAKNVEGVGWAILVYE-------------PLEEQLLILQIEKHNLMHAA--D 168
Query: 218 YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
LL +DVWEHAY+L ++N R +Y+ + + +V+W+ V +RL+
Sbjct: 169 AQVLLALDVWEHAYYLQYKNDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAYK--ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTID 225
T GSGWA L + N+L + + + + L +V PLL +D
Sbjct: 118 TTVQGSGWAALGWDTLGNKLLI---FQVYDHQTNFPLAIV--------------PLLLLD 160
Query: 226 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+WEHA++L ++N + ++ F + +V+W V R
Sbjct: 161 MWEHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVW 227
T GSGWA L + D N KL++ + + PLL +D+W
Sbjct: 118 TTVQGSGWAALGW-------DTLGN--------KLLIFQVYDQQTNFPLGIVPLLLLDMW 162
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
EHA++L ++N + ++ F + +V+W V R
Sbjct: 163 EHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVW 227
T GSGWA L + D N KL++ + + PLL +D+W
Sbjct: 118 TTVQGSGWAALGW-------DTLGN--------KLLIFQVYDEQTNFPLGIVPLLLLDMW 162
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
EHA++L ++N + ++ F + +V+W V R
Sbjct: 163 EHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 23/217 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K+EL P PY +ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLL--ERLEKVVKGDLQTGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFWXXXX--XXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + +GSFDRF + F
Sbjct: 66 DIQGIIRGLTFNINGHKL-HALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFT 124
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
A + G+GWA L Y N L ++ N + + +L +
Sbjct: 125 ETANSLPGTGWAVLYYDTESGN---------------LQIMTFENHFQNHIAEIPIILIL 169
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
D +EHAY+L ++N+R +Y++ + + +V+W+ K+L+
Sbjct: 170 DEFEHAYYLQYKNKRADYVNAWWN-VVNWDAAEKKLQ 205
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVW 227
T GSGWA L + D N KL++ + + PLL +D+W
Sbjct: 118 TTVQGSGWAALGW-------DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMW 162
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
EHA++L ++N + ++ F + +V+W V R
Sbjct: 163 EHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 46 ISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII 105
+S ++ L P PYP +AL+P++S+ +E H KHH+ YV LN + + + + +
Sbjct: 12 MSQQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKL 71
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXX----XXIERDFGSFDRFLE 161
VS + FN NH FW IE+ +GSFD+F +
Sbjct: 72 VSVQQAIK---FNGGGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKD 127
Query: 162 EFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPL 221
F + GSGW WL + +D + + + +P+ +P+
Sbjct: 128 AFNTTLLGIQGSGWGWLVTDGPKGKLD----------------ITTTHDQDPVT-GAAPV 170
Query: 222 LTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+D+WEHAY+L + N + +Y + +++W R
Sbjct: 171 FGVDMWEHAYYLQYLNDKASYAKGIWN-VINWAEAENR 207
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVS 107
A++ L + ALEPH+S E H KHH YV+ N + E + + ED +
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAIL 60
Query: 108 YNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAA 167
N+ N+ FN A NH +W I FGSFD+F +F +AA
Sbjct: 61 LNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAA 117
Query: 168 ATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVW 227
T G GWA L + D N KL++ + + PLL +D+W
Sbjct: 118 TTVQGCGWAALGW-------DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMW 162
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
EHA++L ++N + ++ F + +V+W V R
Sbjct: 163 EHAFYLQYKNVKVDFAKAFWN-VVNWADVQSR 193
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 23/217 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
K+EL P PY +ALEP++SKD ++ H+ HH+ +V N + L+ + D+ Y
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGFVNGANSLL--ERLEKVVKGDLQTGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFWXXXX--XXXXXXXXXXXXXXIERDFGSFDRFLEEFK 164
+ ++ FN H +W I + +GSFDRF + F
Sbjct: 66 DIQGIIRGLTFNINGHKL-HALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFT 124
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
A + G+GWA L Y N L ++ N + + +L +
Sbjct: 125 ETANSLPGTGWAVLYYDTESGN---------------LQIMTFENHFQNHIAEIPIILIL 169
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
D +EHAY+L ++N+R +Y++ + + +V+W+ K+L+
Sbjct: 170 DEFEHAYYLQYKNKRADYVNAWWN-VVNWDAAEKKLQ 205
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM--SLEDVII 105
A + L PY +ALEP++S + +E H KHH+AYV+ N T LD + + +
Sbjct: 1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGAN-----TALDKLAEARDKADF 55
Query: 106 VSYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXX--XXXXXXXIERDFGSFDRFLEEF 163
+ NK FN A NH FW I+ FGSFD +F
Sbjct: 56 GAINKLEKDLAFNLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQF 114
Query: 164 KSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLT 223
+AA GSGWA L + +P K++ ++ + N L PLL
Sbjct: 115 TAAATGIQGSGWASLVW-----------DPL----GKRINTLQFYDHQNNLPAGSIPLLQ 159
Query: 224 IDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260
+D+WEHA++L ++N + +Y+ + + +V+W+ V+ R
Sbjct: 160 LDMWEHAFYLQYKNVKGDYVKSWWN-VVNWDDVALRF 195
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 23/217 (10%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108
++E PY +ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y
Sbjct: 8 RYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLL--DRLEKLIKGDLPQGQY 65
Query: 109 NKGNMLP--PFNNAAQAWNHEFFWXXXXXXXXXXXXXX--XXXXIERDFGSFDRFLEEFK 164
+ +L FN H +W I++ +GSFDRF + F
Sbjct: 66 DLQGILRGLTFNINGHKL-HAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFS 124
Query: 165 SAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTI 224
+A + GSGW L Y DN + L ++ N + + +L +
Sbjct: 125 ESANSLPGSGWTVLYY-------DN--------ESGNLQIMTVENHFMNHIAELPVILIV 169
Query: 225 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
D +EHAY+L ++N+R +Y++ + + +V+W+ KRL+
Sbjct: 170 DEFEHAYYLQYKNKRGDYLNAWWN-VVNWDDAEKRLQ 205
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 91/215 (42%), Gaps = 38/215 (17%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVS---YNKGNMLPP 116
ALEP++S E H+ KHH+ YV N T +D L D++ N M+
Sbjct: 21 ALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAI 75
Query: 117 FNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAAT 169
N NH FW I+ FGS D ++ + A
Sbjct: 76 QQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAG 135
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDV 226
GSGWA++ V N N KL VV++ N PLV PL+ ID
Sbjct: 136 VQGSGWAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAIDA 177
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
WEHAY+L ++N++ +Y + +V+W+ S+R +
Sbjct: 178 WEHAYYLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 36/224 (16%)
Query: 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVI 104
+ ++ L P PY NALEP++S + + H KHH+ YV N + E G + D+
Sbjct: 15 TKRYTLPPLPYAYNALEPYISAEIXQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIR 74
Query: 105 IVSYN-----KGNMLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFD 157
V + G++L H FW I + FGSF+
Sbjct: 75 AVLRDLSFHLNGHIL-----------HSIFWPNXAPPGKGGGKPGGKIADLINKFFGSFE 123
Query: 158 RFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD 217
+F EEF AA G GWA L Y+ P E+ ++ ++ N + D
Sbjct: 124 KFKEEFSQAAKNVEGVGWAILVYE-------------PLEEQLLILQIEKHNLXHAA--D 168
Query: 218 YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
LL +DVWEHAY+L ++N R +Y+ + + +V+W+ V +RL+
Sbjct: 169 AQVLLALDVWEHAYYLQYKNDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 38/215 (17%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLPP 116
ALEP++S E H+ KHH+ YV N T +D L D++ + N M+
Sbjct: 21 ALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIAI 75
Query: 117 FNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAAT 169
N NH FW I+ FGS D ++ + A
Sbjct: 76 QQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLAG 135
Query: 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDV 226
GSGWA++ V N N KL VV++ N PLV PL+ ID
Sbjct: 136 VQGSGWAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAIDA 177
Query: 227 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
WEHAY+L ++N++ +Y + +V+W+ S+R +
Sbjct: 178 WEHAYYLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 32/214 (14%)
Query: 58 PPNALEPH----MSKDTLEYHWGKHHRAYVENLNK---QIVGTELDGMSLEDVIIVSYNK 110
P + L+P +S + +E H+ H++ YV N+ ++ S + Y +
Sbjct: 7 PKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEYRE 66
Query: 111 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
+ FN HE ++ IE D G D E K AAA
Sbjct: 67 LKVEETFNYMGVVL-HELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELK-AAAMA 124
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS---PLLTIDVW 227
F GWA L ++ F +VV +A N V++ + PL+ ID +
Sbjct: 125 F-RGWAILG-----------LDIFSGR-----LVVNGLDAHN--VYNLTGLIPLIVIDTY 165
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
EHAY++D++N+RP YI F K ++W+VV++R E
Sbjct: 166 EHAYYVDYKNKRPPYIDAFF-KNINWDVVNERFE 198
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGN---MLPPF 117
ALEP++S E H+ HH+ YV N + + L D++ + N M+
Sbjct: 13 ALEPYISGQINELHYTXHHQTYVNGFNTAVDQFQ----ELSDLLAXEPSPANARXMIAIQ 68
Query: 118 NN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
N NH FW I+ FGS D + + A
Sbjct: 69 QNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGV 128
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVW 227
GSGWA++ N+ N L VV++ N PLV PL+ ID W
Sbjct: 129 QGSGWAFIVX-----NLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAIDAW 170
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
EHAY+L ++N +Y + +V+W S+R +
Sbjct: 171 EHAYYLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 84/218 (38%), Gaps = 28/218 (12%)
Query: 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIV 106
K L + +ALEP++SK+ + H KHH AYV N I E + L+ V+ +
Sbjct: 7 KISLPKIDWALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEI 66
Query: 107 SYNKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXX-----XXXXXXXXIERDFGSFDRFLE 161
N F+ NH FW I +GS ++
Sbjct: 67 QQN-----IKFHGGGHT-NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLID 120
Query: 162 EFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPL 221
S A GSGWA++ V N N L VV + N P+
Sbjct: 121 ITNSKLAGIQGSGWAFI--------VKNKQN------GGALDVVTTANQDTISAPHLVPI 166
Query: 222 LTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 259
+ ID WEHAY+L ++N + +Y + +++W R
Sbjct: 167 IAIDAWEHAYYLQYQNVKLDYFKAIWN-VINWAEAESR 203
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 61 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGN---MLPPF 117
ALEP++S E H+ HH+ +V N + + L D++ + N M+
Sbjct: 13 ALEPYISGQINELHYTXHHQTFVNGFNTAVDQFQ----ELSDLLAXEPSPANARXMIAIQ 68
Query: 118 NN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAATQ 170
N NH FW I+ FGS D + + A
Sbjct: 69 QNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLAGV 128
Query: 171 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTIDVW 227
GSGWA++ N+ N L VV++ N PLV PL+ ID W
Sbjct: 129 QGSGWAFIVX-----NLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAIDAW 170
Query: 228 EHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261
EHAY+L ++N +Y + +V+W S+R +
Sbjct: 171 EHAYYLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 509
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 73 YHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 106
Y HRAY QI EL GMSL ++ ++
Sbjct: 435 YSLAMLHRAYFGKAKSQIASQELPGMSLRELFMI 468
>pdb|1Y0L|H Chain H, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|B Chain B, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|D Chain D, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|F Chain F, Catalytic Elimination Antibody 34e4 In Complex With Hapten
Length = 226
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 172 GSGWAWLAYKANRLNVDN-AVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPL--------- 221
G G W+ +N D+ +N PS KDK ++ NA N L S L
Sbjct: 42 GKGLEWIG----EINPDSRTINYMPSLKDK--FIISRDNAKNSLYLQLSRLRSEDSALYY 95
Query: 222 ---LTIDVWEHAYFLDF 235
L DV+ H Y LD+
Sbjct: 96 CVRLDFDVYNHYYVLDY 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,923,384
Number of Sequences: 62578
Number of extensions: 348130
Number of successful extensions: 923
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 101
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)