Query 022078
Match_columns 303
No_of_seqs 158 out of 1294
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 8.3E-83 1.8E-87 600.3 25.5 283 10-303 15-297 (299)
2 PLN02184 superoxide dismutase 100.0 2.9E-74 6.2E-79 521.7 19.9 207 42-265 3-209 (212)
3 COG0605 SodA Superoxide dismut 100.0 1.2E-73 2.6E-78 512.7 19.8 200 47-265 1-203 (204)
4 PRK10543 superoxide dismutase; 100.0 2E-72 4.3E-77 503.1 19.0 192 48-261 1-192 (193)
5 PLN02622 iron superoxide dismu 100.0 2.1E-71 4.7E-76 515.8 20.0 211 40-265 38-249 (261)
6 PRK10925 superoxide dismutase; 100.0 5.4E-71 1.2E-75 498.4 17.9 196 48-263 1-205 (206)
7 PTZ00078 Superoxide dismutase 100.0 4E-69 8.6E-74 481.9 19.4 191 53-265 1-192 (193)
8 PLN02471 superoxide dismutase 100.0 8.6E-68 1.9E-72 484.4 18.6 196 47-264 28-230 (231)
9 KOG0876 Manganese superoxide d 100.0 1.4E-67 2.9E-72 478.3 18.8 220 30-265 7-231 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 3E-43 6.6E-48 286.5 11.2 106 139-260 1-106 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 99.9 5.4E-29 1.2E-33 194.9 2.6 82 49-134 1-82 (82)
12 PF10669 Phage_Gp23: Protein g 54.0 6.9 0.00015 32.1 1.2 22 267-288 43-64 (121)
13 PF13348 Y_phosphatase3C: Tyro 41.9 28 0.00061 25.4 2.8 19 144-162 33-51 (68)
14 TIGR02118 conserved hypothetic 29.1 47 0.001 26.1 2.4 22 64-86 10-31 (100)
15 KOG2302 T-type voltage-gated C 28.2 1.9E+02 0.0042 33.1 7.4 110 151-297 1312-1427(1956)
16 PF07110 EthD: EthD domain; I 26.7 56 0.0012 24.6 2.4 23 64-86 1-23 (95)
17 PF12196 hNIFK_binding: FHA Ki 20.3 94 0.002 21.5 2.1 22 274-295 16-37 (41)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=8.3e-83 Score=600.27 Aligned_cols=283 Identities=78% Similarity=1.293 Sum_probs=251.9
Q ss_pred ccccCCCCCCCCCCCCCcchHHHhhhhhcccccccccceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022078 10 WLTGQGLGGRSPGFQFPWRSKEKLQRKYTGKAVYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQ 89 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~ 89 (303)
+||+|+...| .||+-+.+.-+ .........++|+||||||+|++|+|+||++||++||+|||++||++||++
T Consensus 15 ~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~a 86 (299)
T PLN02685 15 LLPSQGPSRR-----MQWKGKRRTCT---RKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQ 86 (299)
T ss_pred cCcccCCccc-----chhhhhhhhhh---hhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665555 78987544333 333345557899999999999999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHhcCCCCCcccccchhhhcchhhccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 022078 90 IVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAAT 169 (303)
Q Consensus 90 l~~~~le~~sl~~ii~~~~~~~~~~~~fN~as~~~NH~fFw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s 169 (303)
+++++++++++++|+..++.++....+||+|||+|||+|||+||+|++++.|++.|+++|+++|||||+||++|.++|.+
T Consensus 87 l~~t~l~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s 166 (299)
T PLN02685 87 IVGTELDGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAAT 166 (299)
T ss_pred HcCchhhcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99988999999999877766665556899999999999999999998888999999999999999999999999999999
Q ss_pred CCCceEEEEEEecCcccccCCCCCCCCCCCCceeEeccCCCCCCCCCCCeeEEEeccchhhhHHhhccChHHHHHHHHhc
Q 022078 170 QFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDK 249 (303)
Q Consensus 170 ~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i~~t~n~~~pl~~g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~ 249 (303)
+|||||+|||++.+.+++++++||.+...+++|.|+++.|+++|+..+.+|||||||||||||+||||+|++||++||++
T Consensus 167 ~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~ 246 (299)
T PLN02685 167 QFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEK 246 (299)
T ss_pred CCCCeEEEEEEccccccccccccccccccCCceeEEeccCCCCCccCCCEeEEEEecchhhhHHHhccChHHHHHHHHHc
Confidence 99999999999988899999999998777899999999999999999999999999999999999999999999999975
Q ss_pred CCCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccccccceeeecCCCCCCC
Q 022078 250 LVSWEVVSKRLEIAKARATKREMEEERRKKEEEEENSEDEAVEVYVDGDESESE 303 (303)
Q Consensus 250 ~INW~~Ve~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (303)
+|||++|++||.++......||++|-|-+.|+ .-+.||||+|+|.|-+-||
T Consensus 247 vINW~~V~~R~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 297 (299)
T PLN02685 247 LVSWEAVSARLESAKARAAQREQEETRTEDEE---EPDSEAVEMYLDSDIDVSE 297 (299)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccccchHHhhccCcccccc
Confidence 79999999999999999999999988776543 3456899999999876554
No 2
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=2.9e-74 Score=521.66 Aligned_cols=207 Identities=71% Similarity=1.265 Sum_probs=192.1
Q ss_pred cccccceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCcccccch
Q 022078 42 VYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAA 121 (303)
Q Consensus 42 ~~~~~~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~le~~sl~~ii~~~~~~~~~~~~fN~as 121 (303)
..+.+.++|+||||||++++|+|+||++||++||+|||++||++||++++++++++.++++|+..++..+....+||+||
T Consensus 3 ~~~~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~~~~~l~~ii~~~~~~~~~~~ifnnag 82 (212)
T PLN02184 3 ASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAA 82 (212)
T ss_pred chhhhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcccchHHHHHHhHH
Confidence 34566889999999999999999999999999999999999999999999999999999999876665554456899999
Q ss_pred hhhcchhhccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCc
Q 022078 122 QAWNHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKK 201 (303)
Q Consensus 122 ~~~NH~fFw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~ 201 (303)
|++||+|||+||+|++++.|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| .++
T Consensus 83 g~~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~-----------------~~~ 145 (212)
T PLN02184 83 QAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS-----------------NEK 145 (212)
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEE-----------------CCE
Confidence 999999999999998878899999999999999999999999999999999999999997 268
Q ss_pred eeEeccCCCCCCCCCCCeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022078 202 LVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 265 (303)
Q Consensus 202 L~i~~t~n~~~pl~~g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~~ 265 (303)
|.|++|.|+++|++.+.+|||||||||||||+||||+|++||++||+++|||++|++||.++..
T Consensus 146 L~i~~t~n~~~P~~~~~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~~ 209 (212)
T PLN02184 146 LKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209 (212)
T ss_pred EEEEeecCCCCCccCCCeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999658999999999987643
No 3
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-73 Score=512.65 Aligned_cols=200 Identities=52% Similarity=0.988 Sum_probs=187.0
Q ss_pred ceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCHHHHHHHHhcCCCCCcccccchhhh
Q 022078 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 124 (303)
Q Consensus 47 ~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~--le~~sl~~ii~~~~~~~~~~~~fN~as~~~ 124 (303)
+|.|+||+|||+|++|+|+||++||++||+|||++||++||+++++.+ +++.++++++......+. .++|++||++
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~ 78 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHW 78 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhh
Confidence 468999999999999999999999999999999999999999999944 899999988876654332 4899999999
Q ss_pred cchhhccccCCC-CCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCcee
Q 022078 125 NHEFFWESMKPG-GGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLV 203 (303)
Q Consensus 125 NH~fFw~~L~P~-~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~ 203 (303)
||+|||++|+|+ +++.|+|+|+++|+++|||+|+||++|.++|.++|||||+|||+| ..++|.
T Consensus 79 NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~----------------~~~kL~ 142 (204)
T COG0605 79 NHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYD----------------PDGKLE 142 (204)
T ss_pred hHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEEC----------------CCCcEE
Confidence 999999999996 888999999999999999999999999999999999999999997 456999
Q ss_pred EeccCCCCCCCCCCCeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022078 204 VVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 265 (303)
Q Consensus 204 i~~t~n~~~pl~~g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~~ 265 (303)
|++|.||++|++.+.+|||||||||||||+||||+|++||++||+ +|||++|++||.++++
T Consensus 143 i~~t~n~~~p~~~~~~PiL~lDvWEHAYYldY~N~R~~Yv~afwn-vVNW~~V~~r~~~a~~ 203 (204)
T COG0605 143 IVSTYNQDTPLMWGSVPLLGLDVWEHAYYLDYGNRRPDYVEAFWN-VVNWDEVEERFEAAKK 203 (204)
T ss_pred EEeccCCCCcccCCCCceEEecchHHHHHHHhccCcHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999996 9999999999998864
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=2e-72 Score=503.14 Aligned_cols=192 Identities=51% Similarity=0.973 Sum_probs=181.2
Q ss_pred eeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCcccccchhhhcch
Q 022078 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHE 127 (303)
Q Consensus 48 ~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~le~~sl~~ii~~~~~~~~~~~~fN~as~~~NH~ 127 (303)
|+|+||+|||++++|+|+||++||++||+|||++||++||++++++++++.++.+|+... ...+||+|||++||+
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~~~~~l~~ii~~~-----~~~ifnna~g~~NH~ 75 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS-----EGGVFNNAAQVWNHT 75 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999889999999987542 135899999999999
Q ss_pred hhccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceeEecc
Q 022078 128 FFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKS 207 (303)
Q Consensus 128 fFw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i~~t 207 (303)
|||+||+|.+++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+| .+++|.|++|
T Consensus 76 lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~----------------~~~~L~I~~t 139 (193)
T PRK10543 76 FYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKN----------------ADGKLAIVST 139 (193)
T ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCCEEEEec
Confidence 999999998777899999999999999999999999999999999999999997 3689999999
Q ss_pred CCCCCCCCCCCeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHH
Q 022078 208 PNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 261 (303)
Q Consensus 208 ~n~~~pl~~g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~ 261 (303)
.||++|++.+.+|||||||||||||+||||+|++||++||+ +|||++|++||.
T Consensus 140 ~n~~~p~~~~~~PlL~lDvWEHAYyldY~n~r~~Yv~~~w~-~inW~~v~~r~~ 192 (193)
T PRK10543 140 SNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWA-LVNWEFVAKNLA 192 (193)
T ss_pred cCCCCCcCCCCEeEEEEecchhhhHHHhccCHHHHHHHHHh-ccCHHHHHHHhc
Confidence 99999999899999999999999999999999999999997 899999999995
No 5
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=2.1e-71 Score=515.80 Aligned_cols=211 Identities=55% Similarity=1.046 Sum_probs=192.7
Q ss_pred cccccccceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCHHHHHHHHhcCCCCCcccc
Q 022078 40 KAVYGQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVIIVSYNKGNMLPPFN 118 (303)
Q Consensus 40 ~~~~~~~~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~-le~~sl~~ii~~~~~~~~~~~~fN 118 (303)
.++...+.+.|+||+|||++++|+|+||++||++||+|||++||++||+++++++ ++..++.+|+..+...+....+||
T Consensus 38 ~~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfn 117 (261)
T PLN02622 38 LQRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFN 117 (261)
T ss_pred ccccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHH
Confidence 3344577889999999999999999999999999999999999999999998864 677889999866555554556899
Q ss_pred cchhhhcchhhccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCC
Q 022078 119 NAAQAWNHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEK 198 (303)
Q Consensus 119 ~as~~~NH~fFw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~ 198 (303)
+|||++||+|||+||+|++++.|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| ..
T Consensus 118 na~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d---------------~~ 182 (261)
T PLN02622 118 NAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLK---------------RE 182 (261)
T ss_pred HHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEe---------------CC
Confidence 999999999999999998777899999999999999999999999999999999999999998 55
Q ss_pred CCceeEeccCCCCCCCCCCCeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022078 199 DKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 265 (303)
Q Consensus 199 ~~~L~i~~t~n~~~pl~~g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~~ 265 (303)
+++|.|++|.||++|++.+.+|||||||||||||+||||+|++||++||+++|||++|++||.++..
T Consensus 183 ~g~L~I~~t~N~~~Pl~~~~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~~~ 249 (261)
T PLN02622 183 ERRLEVVKTSNAINPLVWDDIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARAEA 249 (261)
T ss_pred CCeEEEEecCCCCCCccCCCEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHhhc
Confidence 6889999999999999999999999999999999999999999999999756999999999987754
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=5.4e-71 Score=498.36 Aligned_cols=196 Identities=43% Similarity=0.768 Sum_probs=178.5
Q ss_pred eeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCHHHHHHHHhcCCC--CCcccccchhhh
Q 022078 48 AKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSYNKGN--MLPPFNNAAQAW 124 (303)
Q Consensus 48 ~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~-~le~~sl~~ii~~~~~~~~--~~~~fN~as~~~ 124 (303)
|+|+||||||++++|+|+||++||++||+|||++||++||++++++ +++++++++|+......+. +..+||+|||++
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~ 80 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA 80 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999886 4778899999866544333 234789999999
Q ss_pred cchhhccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceeE
Q 022078 125 NHEFFWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVV 204 (303)
Q Consensus 125 NH~fFw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i 204 (303)
||+|||+||+|+ +.|++.|+++|+++|||||+||++|.++|.++|||||+|||++ .++|.|
T Consensus 81 NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~-----------------~~~L~i 141 (206)
T PRK10925 81 NHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK-----------------GDKLAV 141 (206)
T ss_pred HHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe-----------------CCEEEE
Confidence 999999999993 4799999999999999999999999999999999999999997 368999
Q ss_pred eccCCCCCCCCC------CCeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHH
Q 022078 205 VKSPNAVNPLVW------DYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIA 263 (303)
Q Consensus 205 ~~t~n~~~pl~~------g~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a 263 (303)
++|.||++|++. +.+|||||||||||||+||||+|++||++||+ +|||++|++||.++
T Consensus 142 ~~t~N~~~p~~~~~~~~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~-~inW~~v~~r~~~~ 205 (206)
T PRK10925 142 VSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAK 205 (206)
T ss_pred EeccCCCCCccccccccCCCceeEEEechHHHhHHHHccCHHHHHHHHHh-ccCHHHHHHHHHhc
Confidence 999999999874 34899999999999999999999999999997 89999999999864
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=4e-69 Score=481.87 Aligned_cols=191 Identities=45% Similarity=0.873 Sum_probs=178.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCcccccchhhhcchhhccc
Q 022078 53 KPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWES 132 (303)
Q Consensus 53 p~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~le~~sl~~ii~~~~~~~~~~~~fN~as~~~NH~fFw~~ 132 (303)
|||||++++|+|+||++||++||++||++||++||++++++++++.++.+++.... ..+||+|||++||+|||+|
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~~ 75 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWLS 75 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999998888899999875432 2589999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceeEeccCCCCC
Q 022078 133 MKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVN 212 (303)
Q Consensus 133 L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i~~t~n~~~ 212 (303)
|+|++++.|++.|+++|+++|||+|+||++|.++|.++|||||||||++ .+++|.|++|.|+++
T Consensus 76 L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~----------------~~~~L~i~~t~n~~~ 139 (193)
T PTZ00078 76 MGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK----------------NDGKLEIVQTHDAGN 139 (193)
T ss_pred cCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCcEEEEeccCCCC
Confidence 9998778899999999999999999999999999999999999999975 468999999999999
Q ss_pred CCCCC-CeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022078 213 PLVWD-YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 265 (303)
Q Consensus 213 pl~~g-~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~~ 265 (303)
|++.+ .+|||||||||||||+||||+|++||++||+ +|||++|++||.++..
T Consensus 140 p~~~~~~~PlL~lDvWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~~ 192 (193)
T PTZ00078 140 PIKDNTGKPLLTCDIWEHAYYIDYRNDRASYVNSWWN-KVNWDFANKNLKKLMQ 192 (193)
T ss_pred CccCCCCceEEEeccchhhhHHHHccCHHHHHHHHHH-ccCHHHHHHHHHHHhc
Confidence 99864 7999999999999999999999999999997 8999999999988753
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=8.6e-68 Score=484.45 Aligned_cols=196 Identities=34% Similarity=0.628 Sum_probs=172.4
Q ss_pred ceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCHHHHHHHHhcCCCCCcccccchhhh
Q 022078 47 SAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 124 (303)
Q Consensus 47 ~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~--le~~sl~~ii~~~~~~~~~~~~fN~as~~~ 124 (303)
.++|+||+|||++++|+|+||++||++||+|||++||++||+++++.+ .+..++.+++.. ...++|++||++
T Consensus 28 ~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~ 101 (231)
T PLN02471 28 LQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHV 101 (231)
T ss_pred cccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHH
Confidence 367999999999999999999999999999999999999999997632 234455555421 124788899999
Q ss_pred cchhhccccCCC--CCCC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCc
Q 022078 125 NHEFFWESMKPG--GGGK-PSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKK 201 (303)
Q Consensus 125 NH~fFw~~L~P~--~~~~-P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~ 201 (303)
||+|||+||+|. +++. |++.|+++|+++|||+|+|+++|.++|.++|||||+|||+| +.+++
T Consensus 102 NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d---------------~~~~~ 166 (231)
T PLN02471 102 NHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLD---------------KELKK 166 (231)
T ss_pred hHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEe---------------CCCCe
Confidence 999999999985 3334 68999999999999999999999999999999999999998 45689
Q ss_pred eeEeccCCCCCCCCCC--CeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022078 202 LVVVKSPNAVNPLVWD--YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAK 264 (303)
Q Consensus 202 L~i~~t~n~~~pl~~g--~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~ 264 (303)
|.|++|.||++|+..+ .+|||||||||||||+||||+|++||++||+ +|||++|++||+++|
T Consensus 167 L~i~~t~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~-~inW~~v~~r~~~~~ 230 (231)
T PLN02471 167 LVVETTANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWK-VMNWKYASEVYEKEC 230 (231)
T ss_pred EEEEeecCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHHHHHH-ccCHHHHHHHHHhhc
Confidence 9999999999876554 5899999999999999999999999999997 899999999998865
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-67 Score=478.26 Aligned_cols=220 Identities=45% Similarity=0.819 Sum_probs=193.7
Q ss_pred HHHhhhhhcccccc-cccceeeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHh
Q 022078 30 KEKLQRKYTGKAVY-GQISAKFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSY 108 (303)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~le~~sl~~ii~~~~ 108 (303)
.+...+++..+... .-+..++.||+|||++++|+|.||+++|++||+|||++||++||++++++.........++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~t~ 86 (234)
T KOG0876|consen 7 LTHLKKRRSLKLLFSLAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSLTA 86 (234)
T ss_pred HHHHHhhcccceeeheeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhHhc
Confidence 34444544444443 46678999999999999999999999999999999999999999999987744444444444477
Q ss_pred cCCCCCcccccchhhhcchhhccccCCCCCCCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccc
Q 022078 109 NKGNMLPPFNNAAQAWNHEFFWESMKPGGGGKPSGE-LLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNV 187 (303)
Q Consensus 109 ~~~~~~~~fN~as~~~NH~fFw~~L~P~~~~~P~~~-L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~ 187 (303)
..+...+.||+||+++||+|||++|.|++++.|.+. |+++|+++|||+++|+++|.++++++|||||+|||++
T Consensus 87 ~~~~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~------ 160 (234)
T KOG0876|consen 87 IAPQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYN------ 160 (234)
T ss_pred cChhhhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEc------
Confidence 788888999999999999999999999888888776 9999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCceeEeccCCCCCCCCCC---CeeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022078 188 DNAVNPFPSEKDKKLVVVKSPNAVNPLVWD---YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAK 264 (303)
Q Consensus 188 ~~~~sp~~~~~~~~L~i~~t~n~~~pl~~g---~~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~ 264 (303)
...++|.|++|.||.+|+.++ .+|||||||||||||+||||+|++||++||+ +|||++|++||++++
T Consensus 161 ---------~~~~kL~i~~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd-~inW~~v~~R~~~~k 230 (234)
T KOG0876|consen 161 ---------KELKKLFILTTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWD-VINWKVVSERFEAAK 230 (234)
T ss_pred ---------CCCCeEEEEecCCCCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHH-HhcHHHHHHHHHHhh
Confidence 444799999999999999876 8999999999999999999999999999998 999999999999655
Q ss_pred H
Q 022078 265 A 265 (303)
Q Consensus 265 ~ 265 (303)
.
T Consensus 231 ~ 231 (234)
T KOG0876|consen 231 I 231 (234)
T ss_pred h
Confidence 4
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=3e-43 Score=286.49 Aligned_cols=106 Identities=54% Similarity=1.117 Sum_probs=100.7
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceeEeccCCCCCCCCCCC
Q 022078 139 GKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 218 (303)
Q Consensus 139 ~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i~~t~n~~~pl~~g~ 218 (303)
+.|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| +.+++|.|+++.|+++|+..+.
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d---------------~~~~~L~i~~t~n~~~p~~~~~ 65 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYD---------------PSDGKLSIISTPNHDTPIIWGL 65 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEE---------------TTTTEEEEEEEETTTBGGGGTE
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeec---------------cccceeeeeeecccccccchhh
Confidence 4799999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred eeEEEeccchhhhHHhhccChHHHHHHHHhcCCCHHHHHHHH
Q 022078 219 SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 260 (303)
Q Consensus 219 ~PLL~IDvWEHAYylDYgn~R~~Yl~~fw~~~INW~~Ve~R~ 260 (303)
+|||||||||||||+||||+|++||++||+ +|||++|++||
T Consensus 66 ~Pll~iD~weHaY~~dy~~~r~~Yv~~~~~-~inW~~v~~r~ 106 (106)
T PF02777_consen 66 IPLLCIDVWEHAYYLDYGNKRADYVEAFWN-VINWEVVEKRY 106 (106)
T ss_dssp EEEEEEE-SGGGTHHHHTTHHHHHHHHHGG-GBBHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHhccHHHHHHHHHH-HcCHHHHHhhC
Confidence 999999999999999999999999999997 89999999998
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.95 E-value=5.4e-29 Score=194.88 Aligned_cols=82 Identities=50% Similarity=0.830 Sum_probs=69.3
Q ss_pred eeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHhcCCCCCcccccchhhhcchh
Q 022078 49 KFELKPPPYPPNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEF 128 (303)
Q Consensus 49 ~f~Lp~LpY~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~l~~~~le~~sl~~ii~~~~~~~~~~~~fN~as~~~NH~f 128 (303)
+|+||+|||+|++|+|+||++||++||+|||++||++||++++++++++.++.+++.... +..++|+|||++||+|
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~~~~~~~~~~~~~~----~~~~~nn~gg~~NH~~ 76 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTELEGKSLEEIISNAL----RAALRNNAGGHYNHSF 76 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHHHTSTHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhh----hHHHHHHcchhhhHHH
Confidence 489999999999999999999999999999999999999999999999999999986522 3468999999999999
Q ss_pred hccccC
Q 022078 129 FWESMK 134 (303)
Q Consensus 129 Fw~~L~ 134 (303)
||+||+
T Consensus 77 fw~~ls 82 (82)
T PF00081_consen 77 FWENLS 82 (82)
T ss_dssp HHHTB-
T ss_pred HHHHcC
Confidence 999995
No 12
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=54.03 E-value=6.9 Score=32.15 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHhhhcccc
Q 022078 267 ATKREMEEERRKKEEEEENSED 288 (303)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~ 288 (303)
...-+|||||.|+|++++.-+.
T Consensus 43 ~~r~~MKEER~K~E~~~q~r~r 64 (121)
T PF10669_consen 43 QVRIRMKEERSKKEEKRQKRNR 64 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344677777777766654443
No 13
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=41.94 E-value=28 Score=25.41 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 022078 144 ELLELIERDFGSFDRFLEE 162 (303)
Q Consensus 144 ~L~~~I~~sFGS~d~fk~~ 162 (303)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4568999999999999743
No 14
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=29.11 E-value=47 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 022078 64 PHMSKDTLEYHWGKHHRAYVENL 86 (303)
Q Consensus 64 p~iS~~tl~~H~~khh~~YV~~L 86 (303)
| +|.++++.||..+|.-++.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 999999999999999998886
No 15
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.22 E-value=1.9e+02 Score=33.11 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=61.2
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceeEeccCCCCCCCCCCCeeEEEeccchhh
Q 022078 151 RDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHA 230 (303)
Q Consensus 151 ~sFGS~d~fk~~F~~~A~s~fGSGWvWLV~d~~~l~~~~~~sp~~~~~~~~L~i~~t~n~~~pl~~g~~PLL~IDvWEHA 230 (303)
+.|-.||++-..+..-=.-.--.||+=..|| . | +.+.++..||+.-|-|=--
T Consensus 1312 rhkyNfdnlgqalmSLFvLaSkDgWv~ImyD---------------g----l---------davavdqqPI~nhnpwmll 1363 (1956)
T KOG2302|consen 1312 RHKYNFDNLGQALMSLFVLASKDGWVNIMYD---------------G----L---------DAVAVDQQPILNHNPWMLL 1363 (1956)
T ss_pred hhhcccchHHHHHHHHHHHhcccchhhhhcc---------------c----h---------hhceeeeeccccCCcHHHH
Confidence 3455777763333222111112799999987 1 1 1244566899988989999
Q ss_pred hHHhhccChHHHHHHHHhcCCCHHHHHHHHHHHHH-----hhhhhHHH-HHHHHHHHhhhccccccceeeecC
Q 022078 231 YFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA-----RATKREME-EERRKKEEEEENSEDEAVEVYVDG 297 (303)
Q Consensus 231 YylDYgn~R~~Yl~~fw~~~INW~~Ve~R~~~a~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 297 (303)
|++-+----.-+|-+.+ + ++|-++|-|.+. ....||+| -+|-+|++. +.+-.++|-|+
T Consensus 1364 YfIsfllIvsffVlnmf--V---gvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR----~Aq~kpyysey 1427 (1956)
T KOG2302|consen 1364 YFISFLLIVSFFVLNMF--V---GVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRR----AAQRKPYYSEY 1427 (1956)
T ss_pred HHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCCcccccc
Confidence 98877544445555544 2 566666665533 33444555 233333333 34455667665
No 16
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=26.72 E-value=56 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 022078 64 PHMSKDTLEYHWGKHHRAYVENL 86 (303)
Q Consensus 64 p~iS~~tl~~H~~khh~~YV~~L 86 (303)
|.||.+.+.-||...|..+|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999888876554
No 17
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=20.29 E-value=94 Score=21.49 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhccccccceeee
Q 022078 274 EERRKKEEEEENSEDEAVEVYV 295 (303)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~ 295 (303)
-||||-|..|-|.+|+--|+.+
T Consensus 16 LErRKS~~~emndDd~D~EIv~ 37 (41)
T PF12196_consen 16 LERRKSEVAEMNDDDEDDEIVF 37 (41)
T ss_dssp HHHHHHHHHH--GGGGS-SEEE
T ss_pred HHHhhhhhhcccCCCcCCeeEe
Confidence 5788888888777766655543
Done!