Query 022079
Match_columns 303
No_of_seqs 185 out of 1367
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 7.9E-84 1.7E-88 628.9 26.0 266 38-303 31-298 (524)
2 PLN02998 beta-glucosidase 100.0 2.6E-79 5.6E-84 607.8 25.8 279 19-303 9-288 (497)
3 PLN02814 beta-glucosidase 100.0 9.9E-79 2.1E-83 604.5 25.1 258 40-303 24-282 (504)
4 PLN02849 beta-glucosidase 100.0 4.9E-78 1.1E-82 599.4 26.6 260 39-303 25-284 (503)
5 COG2723 BglB Beta-glucosidase/ 100.0 3.7E-77 8E-82 578.0 23.2 247 42-302 2-250 (460)
6 PRK13511 6-phospho-beta-galact 100.0 8.8E-76 1.9E-80 580.6 23.8 241 43-303 4-245 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 4.7E-75 1E-79 574.7 24.4 241 43-303 3-244 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1E-74 2.2E-79 573.5 24.2 244 41-298 3-262 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 6E-74 1.3E-78 567.7 24.3 243 43-299 3-262 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 2E-74 4.3E-79 569.7 16.9 246 42-303 3-250 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 4.3E-73 9.3E-78 561.5 25.2 245 40-298 2-263 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 3.5E-72 7.5E-77 554.4 24.6 241 43-297 3-259 (474)
13 TIGR03356 BGL beta-galactosida 100.0 2.2E-71 4.7E-76 543.7 24.0 244 44-303 1-244 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 2E-13 4.4E-18 132.0 8.5 108 97-209 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.4 8.4E-13 1.8E-17 120.7 8.3 109 98-210 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.9 6.6E-09 1.4E-13 95.6 9.0 84 118-210 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.7 4E-08 8.6E-13 101.0 6.9 118 98-220 31-175 (673)
18 COG2730 BglC Endoglucanase [Ca 98.4 9.8E-07 2.1E-11 86.7 8.5 110 100-209 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.3 2.4E-06 5.2E-11 85.7 8.5 106 99-210 41-168 (486)
20 PF01301 Glyco_hydro_35: Glyco 97.9 4.9E-05 1.1E-09 72.5 8.1 109 98-208 25-151 (319)
21 PF00331 Glyco_hydro_10: Glyco 97.7 0.00013 2.9E-09 69.4 8.0 89 116-210 42-137 (320)
22 PF07745 Glyco_hydro_53: Glyco 97.5 0.003 6.5E-08 60.6 14.3 141 100-276 27-177 (332)
23 PLN03059 beta-galactosidase; P 97.4 0.0008 1.7E-08 71.1 10.2 110 97-209 59-189 (840)
24 PF01373 Glyco_hydro_14: Glyco 97.2 0.00054 1.2E-08 66.8 5.6 99 96-198 15-144 (402)
25 PF13204 DUF4038: Protein of u 97.2 0.002 4.3E-08 60.6 9.0 104 99-207 32-156 (289)
26 PLN02161 beta-amylase 97.2 0.0011 2.3E-08 66.2 7.3 102 93-198 113-253 (531)
27 PLN02803 beta-amylase 97.2 0.00098 2.1E-08 66.8 7.0 99 96-198 106-243 (548)
28 PLN00197 beta-amylase; Provisi 97.1 0.0017 3.6E-08 65.4 7.6 100 95-198 125-263 (573)
29 PF14587 Glyco_hydr_30_2: O-Gl 97.0 0.0013 2.9E-08 63.8 5.8 101 107-209 57-185 (384)
30 PF02836 Glyco_hydro_2_C: Glyc 96.9 0.005 1.1E-07 57.7 9.2 93 96-208 35-133 (298)
31 PLN02905 beta-amylase 96.9 0.0036 7.7E-08 63.8 8.2 72 94-169 283-366 (702)
32 PLN02801 beta-amylase 96.9 0.0047 1E-07 61.7 8.8 101 94-198 34-173 (517)
33 COG3693 XynA Beta-1,4-xylanase 96.8 0.0032 6.8E-08 59.7 6.8 86 117-209 66-153 (345)
34 PLN02705 beta-amylase 96.7 0.0047 1E-07 62.8 7.8 99 95-197 266-403 (681)
35 PRK10150 beta-D-glucuronidase; 96.4 0.012 2.7E-07 60.6 8.5 94 97-208 313-419 (604)
36 KOG0496 Beta-galactosidase [Ca 96.1 0.037 8.1E-07 56.9 10.2 109 97-208 49-176 (649)
37 PF14488 DUF4434: Domain of un 96.1 0.038 8.2E-07 47.9 8.8 103 97-208 20-131 (166)
38 PRK09525 lacZ beta-D-galactosi 94.8 0.11 2.3E-06 57.1 8.6 90 96-208 370-464 (1027)
39 PRK10340 ebgA cryptic beta-D-g 94.1 0.2 4.3E-06 55.0 8.9 90 96-208 354-451 (1021)
40 COG3250 LacZ Beta-galactosidas 93.6 0.29 6.4E-06 52.3 8.8 89 95-209 319-409 (808)
41 COG3867 Arabinogalactan endo-1 92.7 3.1 6.7E-05 39.6 12.9 104 101-208 67-182 (403)
42 COG3664 XynB Beta-xylosidase [ 91.8 0.28 6.1E-06 48.1 5.1 100 106-211 14-118 (428)
43 PF02638 DUF187: Glycosyl hydr 91.6 5.9 0.00013 37.7 13.9 100 96-195 18-154 (311)
44 COG3934 Endo-beta-mannanase [C 91.3 0.075 1.6E-06 53.0 0.7 110 98-209 27-150 (587)
45 smart00642 Aamy Alpha-amylase 90.4 0.77 1.7E-05 39.6 6.1 63 96-159 18-91 (166)
46 PF03198 Glyco_hydro_72: Gluca 90.4 0.94 2E-05 43.1 7.1 47 98-159 54-100 (314)
47 PF07488 Glyco_hydro_67M: Glyc 87.6 4 8.8E-05 38.8 9.1 87 96-196 56-150 (328)
48 PRK05799 coproporphyrinogen II 85.8 1.6 3.4E-05 42.3 5.7 97 99-212 98-197 (374)
49 PLN02361 alpha-amylase 84.4 2 4.3E-05 42.5 5.7 65 94-158 26-96 (401)
50 PF00128 Alpha-amylase: Alpha 82.9 2.3 5E-05 38.6 5.2 59 99-159 6-73 (316)
51 PF10566 Glyco_hydro_97: Glyco 82.5 3.8 8.2E-05 38.4 6.4 119 71-193 10-149 (273)
52 PLN00196 alpha-amylase; Provis 82.4 2.1 4.6E-05 42.6 5.1 64 95-158 42-112 (428)
53 PRK12313 glycogen branching en 80.3 8.2 0.00018 40.2 8.7 93 96-195 169-302 (633)
54 PRK05402 glycogen branching en 79.1 13 0.00029 39.5 9.9 99 96-195 264-397 (726)
55 TIGR01210 conserved hypothetic 78.9 5.6 0.00012 37.8 6.4 108 100-222 117-229 (313)
56 PRK09058 coproporphyrinogen II 78.5 6.7 0.00014 39.2 7.1 106 99-221 162-270 (449)
57 PRK10933 trehalose-6-phosphate 77.6 5.5 0.00012 40.9 6.4 62 96-159 32-102 (551)
58 cd07945 DRE_TIM_CMS Leptospira 77.3 5.4 0.00012 37.3 5.8 66 99-164 76-141 (280)
59 TIGR02403 trehalose_treC alpha 76.1 6.2 0.00014 40.4 6.3 64 96-159 26-96 (543)
60 PRK09441 cytoplasmic alpha-amy 76.1 5.8 0.00012 39.9 5.9 66 94-159 19-102 (479)
61 cd07939 DRE_TIM_NifV Streptomy 75.8 7.4 0.00016 35.7 6.2 61 99-159 71-131 (259)
62 COG1523 PulA Type II secretory 75.0 5.1 0.00011 42.3 5.4 56 103-158 206-285 (697)
63 cd06592 GH31_glucosidase_KIAA1 74.8 12 0.00027 35.1 7.6 106 99-208 32-167 (303)
64 PRK05692 hydroxymethylglutaryl 74.5 7.8 0.00017 36.4 6.0 62 98-159 80-141 (287)
65 cd03174 DRE_TIM_metallolyase D 74.0 8.2 0.00018 34.9 5.9 61 100-160 77-137 (265)
66 PLN02746 hydroxymethylglutaryl 73.7 8.3 0.00018 37.4 6.1 62 98-159 122-183 (347)
67 KOG2233 Alpha-N-acetylglucosam 73.6 8 0.00017 39.1 6.0 113 96-208 77-249 (666)
68 PRK14705 glycogen branching en 73.5 25 0.00054 39.7 10.4 91 103-195 772-897 (1224)
69 TIGR02456 treS_nterm trehalose 73.0 8 0.00017 39.5 6.1 64 96-159 27-97 (539)
70 PRK07379 coproporphyrinogen II 72.7 6.9 0.00015 38.4 5.4 104 99-219 114-220 (400)
71 PLN02784 alpha-amylase 72.6 7.7 0.00017 41.9 6.0 65 94-158 518-588 (894)
72 PRK03705 glycogen debranching 72.1 7.6 0.00017 40.8 5.8 55 103-159 185-263 (658)
73 PF12876 Cellulase-like: Sugar 72.0 1.8 3.8E-05 33.1 0.9 19 190-208 1-22 (88)
74 PF14871 GHL6: Hypothetical gl 71.3 13 0.00028 30.9 6.0 57 101-159 4-65 (132)
75 TIGR01515 branching_enzym alph 70.5 33 0.00071 35.7 10.1 97 98-195 157-288 (613)
76 PRK10785 maltodextrin glucosid 70.2 9.4 0.0002 39.6 6.0 61 97-159 179-247 (598)
77 PRK06294 coproporphyrinogen II 70.1 11 0.00024 36.5 6.1 95 99-210 102-199 (370)
78 cd06593 GH31_xylosidase_YicI Y 69.4 25 0.00053 33.0 8.2 106 99-208 26-161 (308)
79 PRK05628 coproporphyrinogen II 68.0 13 0.00029 35.9 6.3 97 99-212 107-206 (375)
80 cd02803 OYE_like_FMN_family Ol 68.0 50 0.0011 31.0 10.0 38 123-161 63-100 (327)
81 COG0821 gcpE 1-hydroxy-2-methy 67.7 38 0.00082 32.8 8.9 84 92-190 79-162 (361)
82 PRK11858 aksA trans-homoaconit 67.5 16 0.00034 35.7 6.6 107 100-210 78-202 (378)
83 cd06543 GH18_PF-ChiA-like PF-C 67.5 26 0.00057 33.1 7.9 57 104-161 19-77 (294)
84 PF12891 Glyco_hydro_44: Glyco 67.2 17 0.00036 33.5 6.3 115 137-275 23-180 (239)
85 PRK12581 oxaloacetate decarbox 67.1 17 0.00036 36.8 6.8 57 95-165 98-159 (468)
86 TIGR02090 LEU1_arch isopropylm 66.9 15 0.00032 35.7 6.3 109 98-210 72-198 (363)
87 TIGR02660 nifV_homocitr homoci 66.7 15 0.00032 35.7 6.2 108 99-210 74-199 (365)
88 cd07948 DRE_TIM_HCS Saccharomy 65.7 8.6 0.00019 35.6 4.2 61 99-159 73-133 (262)
89 PRK14510 putative bifunctional 65.6 11 0.00023 42.6 5.6 63 96-158 184-267 (1221)
90 PRK09505 malS alpha-amylase; R 65.2 15 0.00033 38.8 6.4 61 99-159 232-313 (683)
91 PRK09936 hypothetical protein; 64.0 50 0.0011 31.3 8.9 99 98-208 39-145 (296)
92 PF03659 Glyco_hydro_71: Glyco 63.4 33 0.00072 33.7 8.0 50 98-158 18-67 (386)
93 cd07938 DRE_TIM_HMGL 3-hydroxy 62.6 24 0.00052 32.8 6.6 66 99-164 75-141 (274)
94 PRK12858 tagatose 1,6-diphosph 62.4 24 0.00053 34.1 6.8 52 103-158 112-163 (340)
95 TIGR00433 bioB biotin syntheta 62.4 19 0.00042 33.2 6.0 56 99-158 122-178 (296)
96 PRK14041 oxaloacetate decarbox 62.0 23 0.0005 35.8 6.7 97 95-209 88-209 (467)
97 PRK05474 xylose isomerase; Pro 61.4 1.8E+02 0.004 29.1 12.8 73 98-178 80-157 (437)
98 PRK12399 tagatose 1,6-diphosph 61.2 33 0.00072 32.9 7.3 90 103-202 111-203 (324)
99 PRK04161 tagatose 1,6-diphosph 60.9 34 0.00075 32.9 7.3 91 102-202 112-205 (329)
100 PRK12568 glycogen branching en 60.9 21 0.00046 38.1 6.5 98 96-195 268-401 (730)
101 cd06591 GH31_xylosidase_XylS X 60.8 50 0.0011 31.3 8.5 78 132-210 60-163 (319)
102 PRK08599 coproporphyrinogen II 60.7 34 0.00073 33.1 7.5 97 99-212 99-198 (377)
103 TIGR00539 hemN_rel putative ox 60.6 19 0.0004 34.7 5.7 93 99-208 99-194 (360)
104 PRK14040 oxaloacetate decarbox 60.2 26 0.00056 36.5 6.9 97 96-210 91-212 (593)
105 TIGR02100 glgX_debranch glycog 60.0 20 0.00042 38.0 6.1 56 103-159 190-266 (688)
106 TIGR02402 trehalose_TreZ malto 60.0 19 0.00042 36.9 5.9 57 96-159 110-181 (542)
107 cd07944 DRE_TIM_HOA_like 4-hyd 59.4 33 0.00071 31.8 6.9 47 100-160 85-131 (266)
108 cd07937 DRE_TIM_PC_TC_5S Pyruv 59.4 45 0.00099 30.9 7.9 46 99-158 93-138 (275)
109 COG3589 Uncharacterized conser 58.0 45 0.00098 32.3 7.5 71 101-186 20-90 (360)
110 TIGR00612 ispG_gcpE 1-hydroxy- 57.4 64 0.0014 31.2 8.5 85 91-190 76-160 (346)
111 PRK08446 coproporphyrinogen II 57.1 43 0.00092 32.2 7.5 93 100-209 98-193 (350)
112 cd06598 GH31_transferase_CtsZ 57.1 67 0.0015 30.4 8.7 109 99-210 26-168 (317)
113 cd06602 GH31_MGAM_SI_GAA This 56.8 67 0.0014 30.8 8.7 68 141-209 69-168 (339)
114 cd06601 GH31_lyase_GLase GLase 56.6 47 0.001 31.9 7.6 71 140-212 66-139 (332)
115 TIGR01212 radical SAM protein, 56.3 28 0.00061 32.8 6.0 73 137-222 162-234 (302)
116 cd02742 GH20_hexosaminidase Be 56.1 30 0.00064 32.6 6.1 64 98-167 17-98 (303)
117 TIGR02630 xylose_isom_A xylose 56.1 2.2E+02 0.0049 28.5 12.9 72 99-178 80-156 (434)
118 TIGR03581 EF_0839 conserved hy 55.8 41 0.00088 30.7 6.5 77 93-183 131-230 (236)
119 cd06603 GH31_GANC_GANAB_alpha 55.7 60 0.0013 31.0 8.2 72 140-211 66-167 (339)
120 PRK05660 HemN family oxidoredu 54.7 56 0.0012 31.8 7.9 94 99-209 106-202 (378)
121 PF05089 NAGLU: Alpha-N-acetyl 54.5 41 0.00089 32.5 6.7 72 135-208 92-185 (333)
122 TIGR03471 HpnJ hopanoid biosyn 54.4 43 0.00092 33.5 7.2 59 100-164 287-348 (472)
123 COG1501 Alpha-glucosidases, fa 54.4 39 0.00084 36.4 7.2 99 109-213 294-422 (772)
124 cd07941 DRE_TIM_LeuA3 Desulfob 54.1 35 0.00077 31.6 6.2 61 101-161 82-142 (273)
125 cd04733 OYE_like_2_FMN Old yel 53.6 2.1E+02 0.0045 27.3 11.8 40 121-161 63-105 (338)
126 COG2100 Predicted Fe-S oxidore 53.2 49 0.0011 32.1 6.9 82 94-191 198-284 (414)
127 COG3534 AbfA Alpha-L-arabinofu 52.7 1E+02 0.0023 31.1 9.3 56 140-207 107-174 (501)
128 cd02874 GH18_CFLE_spore_hydrol 52.5 30 0.00065 32.4 5.5 54 103-162 16-69 (313)
129 cd06600 GH31_MGAM-like This fa 52.4 84 0.0018 29.7 8.6 78 132-210 58-164 (317)
130 TIGR03234 OH-pyruv-isom hydrox 52.4 36 0.00078 30.6 5.8 66 96-164 83-150 (254)
131 PRK07094 biotin synthase; Prov 52.3 39 0.00085 31.8 6.3 62 98-164 127-190 (323)
132 PRK08208 coproporphyrinogen II 51.9 43 0.00093 33.2 6.7 61 99-164 140-203 (430)
133 TIGR03217 4OH_2_O_val_ald 4-hy 51.0 97 0.0021 29.7 8.8 94 99-209 89-201 (333)
134 PLN02447 1,4-alpha-glucan-bran 50.7 38 0.00082 36.3 6.4 94 101-195 255-383 (758)
135 cd06542 GH18_EndoS-like Endo-b 50.6 63 0.0014 29.2 7.2 26 137-162 50-75 (255)
136 TIGR00538 hemN oxygen-independ 50.5 24 0.00053 35.1 4.8 61 99-164 150-213 (455)
137 PRK00366 ispG 4-hydroxy-3-meth 50.3 83 0.0018 30.7 8.1 73 106-190 97-169 (360)
138 cd07947 DRE_TIM_Re_CS Clostrid 49.8 30 0.00066 32.4 5.0 63 96-158 73-135 (279)
139 COG0366 AmyA Glycosidases [Car 49.8 29 0.00064 34.1 5.2 60 101-161 33-102 (505)
140 PRK13347 coproporphyrinogen II 49.8 26 0.00057 34.9 4.9 61 99-164 151-214 (453)
141 KOG1065 Maltase glucoamylase a 49.7 63 0.0014 34.8 7.7 104 101-211 315-453 (805)
142 PRK14511 maltooligosyl trehalo 49.2 37 0.0008 37.0 6.1 57 96-159 19-90 (879)
143 PRK12331 oxaloacetate decarbox 49.1 56 0.0012 32.8 7.0 94 99-210 98-211 (448)
144 PRK14706 glycogen branching en 48.8 1.3E+02 0.0028 31.7 9.9 91 103-195 174-299 (639)
145 TIGR01211 ELP3 histone acetylt 48.6 61 0.0013 33.2 7.3 105 99-220 205-314 (522)
146 cd06568 GH20_SpHex_like A subg 48.4 60 0.0013 31.1 6.9 72 90-167 9-101 (329)
147 PF02055 Glyco_hydro_30: O-Gly 48.4 27 0.00059 35.5 4.7 67 142-210 157-236 (496)
148 smart00729 Elp3 Elongator prot 47.8 98 0.0021 25.8 7.6 57 98-158 98-157 (216)
149 cd06599 GH31_glycosidase_Aec37 47.5 1.1E+02 0.0025 28.8 8.6 76 133-209 68-171 (317)
150 PLN02389 biotin synthase 47.4 45 0.00098 32.7 6.0 58 98-159 176-234 (379)
151 PRK08207 coproporphyrinogen II 47.3 36 0.00079 34.5 5.5 92 100-208 269-363 (488)
152 PRK06582 coproporphyrinogen II 46.6 74 0.0016 31.2 7.3 95 100-211 111-207 (390)
153 cd07940 DRE_TIM_IPMS 2-isoprop 46.6 55 0.0012 30.1 6.2 60 100-159 72-135 (268)
154 PRK12677 xylose isomerase; Pro 46.4 1.4E+02 0.003 29.3 9.2 71 99-177 33-104 (384)
155 TIGR02401 trehalose_TreY malto 46.0 45 0.00098 36.1 6.1 67 96-162 15-91 (825)
156 cd06604 GH31_glucosidase_II_Ma 45.8 1.3E+02 0.0028 28.7 8.8 68 140-210 66-163 (339)
157 cd06565 GH20_GcnA-like Glycosy 45.4 70 0.0015 30.1 6.8 62 98-167 18-86 (301)
158 PRK14507 putative bifunctional 45.4 69 0.0015 37.5 7.7 67 96-162 757-833 (1693)
159 TIGR01232 lacD tagatose 1,6-di 45.1 93 0.002 30.0 7.4 90 102-201 111-203 (325)
160 PRK05904 coproporphyrinogen II 44.9 99 0.0022 29.8 7.9 93 100-209 103-198 (353)
161 COG5520 O-Glycosyl hydrolase [ 44.5 54 0.0012 32.2 5.8 91 108-210 77-181 (433)
162 PRK09249 coproporphyrinogen II 44.2 68 0.0015 32.0 6.8 61 99-164 150-213 (453)
163 cd06570 GH20_chitobiase-like_1 44.2 2.3E+02 0.0049 26.9 10.1 64 98-167 19-94 (311)
164 PLN02960 alpha-amylase 44.1 40 0.00086 36.8 5.3 94 95-195 414-549 (897)
165 PF02065 Melibiase: Melibiase; 43.9 1.4E+02 0.0031 29.4 8.8 102 98-201 59-187 (394)
166 TIGR00423 radical SAM domain p 43.7 94 0.002 29.2 7.4 58 99-164 106-170 (309)
167 cd06525 GH25_Lyc-like Lyc mura 43.7 1.5E+02 0.0032 25.5 8.2 88 102-202 13-124 (184)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 42.0 87 0.0019 28.7 6.7 46 100-159 88-133 (263)
169 cd06545 GH18_3CO4_chitinase Th 41.5 72 0.0016 28.9 6.1 78 117-196 27-130 (253)
170 TIGR02629 L_rham_iso_rhiz L-rh 41.3 1.8E+02 0.0039 29.0 9.0 89 99-202 72-171 (412)
171 PRK10426 alpha-glucosidase; Pr 41.3 1.8E+02 0.0038 30.6 9.5 105 99-207 223-364 (635)
172 cd06562 GH20_HexA_HexB-like Be 41.3 61 0.0013 31.2 5.8 72 90-167 9-96 (348)
173 PRK09057 coproporphyrinogen II 40.7 1.1E+02 0.0023 29.8 7.5 97 99-212 103-201 (380)
174 PF04914 DltD_C: DltD C-termin 40.1 1E+02 0.0022 25.6 6.2 57 136-196 34-90 (130)
175 COG5016 Pyruvate/oxaloacetate 39.9 1E+02 0.0022 30.8 6.9 52 95-160 91-147 (472)
176 cd06564 GH20_DspB_LnbB-like Gl 39.6 3.1E+02 0.0067 25.9 10.3 64 98-167 18-108 (326)
177 TIGR01108 oadA oxaloacetate de 38.8 97 0.0021 32.2 7.1 94 99-210 93-206 (582)
178 cd02871 GH18_chitinase_D-like 38.7 98 0.0021 29.2 6.7 24 138-161 60-83 (312)
179 PTZ00445 p36-lilke protein; Pr 38.4 50 0.0011 30.0 4.3 58 101-159 33-99 (219)
180 COG0635 HemN Coproporphyrinoge 38.1 81 0.0018 31.3 6.2 103 100-219 137-242 (416)
181 TIGR02026 BchE magnesium-proto 37.5 1.4E+02 0.0029 30.2 7.8 60 100-164 287-348 (497)
182 cd06563 GH20_chitobiase-like T 37.0 87 0.0019 30.2 6.1 72 90-167 9-112 (357)
183 PRK09856 fructoselysine 3-epim 36.3 46 0.001 30.2 4.0 61 95-157 88-148 (275)
184 TIGR00542 hxl6Piso_put hexulos 36.1 57 0.0012 29.8 4.5 61 96-158 93-153 (279)
185 PRK09389 (R)-citramalate synth 35.9 1.1E+02 0.0024 31.1 6.8 108 99-210 75-200 (488)
186 PF01261 AP_endonuc_2: Xylose 35.5 27 0.0006 29.6 2.2 63 96-158 70-132 (213)
187 TIGR03551 F420_cofH 7,8-dideme 35.4 1.4E+02 0.003 28.5 7.2 90 99-205 140-234 (343)
188 PLN02925 4-hydroxy-3-methylbut 35.4 1.3E+02 0.0029 32.0 7.4 51 139-190 211-261 (733)
189 PLN02923 xylose isomerase 34.6 5E+02 0.011 26.2 17.3 89 99-196 125-224 (478)
190 PF10566 Glyco_hydro_97: Glyco 34.4 48 0.0011 31.1 3.7 61 99-171 108-168 (273)
191 TIGR02635 RhaI_grampos L-rhamn 34.2 1.8E+02 0.0038 28.7 7.7 85 99-201 42-136 (378)
192 PF00682 HMGL-like: HMGL-like 34.2 89 0.0019 27.8 5.4 58 103-160 73-130 (237)
193 PRK09997 hydroxypyruvate isome 33.3 1E+02 0.0023 27.7 5.8 65 97-164 85-151 (258)
194 TIGR02631 xylA_Arthro xylose i 33.1 3E+02 0.0064 27.0 9.2 72 98-177 33-105 (382)
195 PF02057 Glyco_hydro_59: Glyco 32.9 76 0.0016 33.5 5.2 65 142-209 116-185 (669)
196 PF01055 Glyco_hydro_31: Glyco 32.9 1.3E+02 0.0029 29.4 6.8 108 99-210 45-184 (441)
197 TIGR03699 mena_SCO4550 menaqui 32.5 2.2E+02 0.0048 26.9 8.1 53 99-158 142-201 (340)
198 TIGR02102 pullulan_Gpos pullul 31.8 88 0.0019 35.2 5.7 59 137-195 554-635 (1111)
199 PRK06256 biotin synthase; Vali 31.5 78 0.0017 29.9 4.7 57 98-158 150-207 (336)
200 cd08576 GDPD_like_SMaseD_PLD G 31.4 3.3E+02 0.0071 25.5 8.7 104 100-209 10-126 (265)
201 PRK08195 4-hyroxy-2-oxovalerat 31.4 1.2E+02 0.0026 29.1 6.1 93 100-209 91-202 (337)
202 PRK01060 endonuclease IV; Prov 31.3 1.9E+02 0.004 26.3 7.1 50 99-154 14-63 (281)
203 COG3661 AguA Alpha-glucuronida 30.7 3E+02 0.0065 28.0 8.6 88 97-192 183-275 (684)
204 PRK13209 L-xylulose 5-phosphat 30.6 4.1E+02 0.0088 24.0 9.5 54 98-156 22-75 (283)
205 PF13812 PPR_3: Pentatricopept 30.5 51 0.0011 19.3 2.2 17 138-154 18-34 (34)
206 PF04055 Radical_SAM: Radical 30.1 81 0.0018 25.1 4.1 52 100-154 90-143 (166)
207 PF03511 Fanconi_A: Fanconi an 29.5 40 0.00088 24.5 1.8 38 121-161 19-56 (64)
208 PRK09282 pyruvate carboxylase 29.4 1.7E+02 0.0036 30.6 7.0 94 99-210 98-211 (592)
209 PF11790 Glyco_hydro_cc: Glyco 29.3 44 0.00096 30.3 2.6 24 185-209 54-77 (239)
210 COG0138 PurH AICAR transformyl 28.8 71 0.0015 32.4 4.0 52 89-157 457-508 (515)
211 PRK13210 putative L-xylulose 5 28.3 84 0.0018 28.5 4.3 61 96-159 93-154 (284)
212 PRK13398 3-deoxy-7-phosphohept 28.1 1.7E+02 0.0038 27.1 6.3 72 93-168 37-108 (266)
213 PRK07106 5-aminoimidazole-4-ca 28.1 70 0.0015 31.5 3.8 51 90-157 333-383 (390)
214 cd01335 Radical_SAM Radical SA 27.9 1.5E+02 0.0031 24.3 5.4 59 99-159 87-146 (204)
215 cd00019 AP2Ec AP endonuclease 27.7 2.5E+02 0.0054 25.5 7.3 26 97-122 10-35 (279)
216 PRK00164 moaA molybdenum cofac 27.6 2.7E+02 0.0058 26.2 7.7 50 99-152 107-158 (331)
217 PTZ00445 p36-lilke protein; Pr 27.6 1.1E+02 0.0023 27.9 4.6 52 137-192 28-89 (219)
218 TIGR00542 hxl6Piso_put hexulos 27.4 4.7E+02 0.01 23.7 9.3 55 97-156 16-70 (279)
219 PF09713 A_thal_3526: Plant pr 27.3 60 0.0013 22.9 2.3 35 141-186 16-51 (54)
220 PF07172 GRP: Glycine rich pro 26.7 93 0.002 24.4 3.6 25 1-27 1-25 (95)
221 PF14981 FAM165: FAM165 family 26.0 78 0.0017 21.7 2.6 24 5-28 3-26 (51)
222 cd06589 GH31 The enzymes of gl 25.9 2.7E+02 0.0059 25.4 7.2 90 99-210 26-120 (265)
223 TIGR02159 PA_CoA_Oxy4 phenylac 25.9 67 0.0014 27.2 2.9 56 91-156 36-92 (146)
224 PF09314 DUF1972: Domain of un 25.8 1E+02 0.0023 27.1 4.2 50 140-197 107-156 (185)
225 TIGR01589 A_thal_3526 uncharac 25.7 98 0.0021 22.1 3.2 35 141-186 19-54 (57)
226 TIGR01856 hisJ_fam histidinol 25.7 1.9E+02 0.0042 26.2 6.1 62 138-201 15-79 (253)
227 PRK13209 L-xylulose 5-phosphat 25.7 90 0.002 28.4 4.0 57 96-158 98-158 (283)
228 PRK12330 oxaloacetate decarbox 25.5 2.1E+02 0.0045 29.3 6.8 95 99-210 99-214 (499)
229 PRK14042 pyruvate carboxylase 25.3 2.4E+02 0.0051 29.6 7.2 97 96-210 90-211 (596)
230 cd06595 GH31_xylosidase_XylS-l 24.9 2.5E+02 0.0055 26.1 6.9 77 132-210 68-163 (292)
231 PRK08508 biotin synthase; Prov 24.6 1.6E+02 0.0034 27.3 5.4 56 99-158 101-157 (279)
232 PRK10658 putative alpha-glucos 24.6 4E+02 0.0087 28.2 8.9 102 103-208 289-420 (665)
233 PF13200 DUF4015: Putative gly 24.5 2E+02 0.0044 27.5 6.2 95 97-192 13-135 (316)
234 COG3280 TreY Maltooligosyl tre 23.3 1.8E+02 0.0038 31.4 5.8 59 99-158 21-88 (889)
235 PF00728 Glyco_hydro_20: Glyco 23.3 1.2E+02 0.0025 28.6 4.4 59 97-158 18-93 (351)
236 PF06777 DUF1227: Protein of u 23.3 1.6E+02 0.0035 25.1 4.6 69 138-207 16-86 (146)
237 TIGR00674 dapA dihydrodipicoli 23.0 4.5E+02 0.0098 24.2 8.2 66 130-209 14-79 (285)
238 cd06594 GH31_glucosidase_YihQ 22.9 3E+02 0.0066 26.0 7.1 67 140-208 73-168 (317)
239 COG2876 AroA 3-deoxy-D-arabino 22.9 4.7E+02 0.01 24.7 8.0 79 92-190 54-132 (286)
240 KOG2566 Beta-glucocerebrosidas 22.5 1.3E+02 0.0027 30.0 4.3 79 135-215 174-266 (518)
241 cd02932 OYE_YqiM_FMN Old yello 22.2 1.3E+02 0.0029 28.5 4.5 40 122-162 62-101 (336)
242 PF08821 CGGC: CGGC domain; I 22.1 1.5E+02 0.0032 23.7 4.1 55 97-159 52-107 (107)
243 PRK08255 salicylyl-CoA 5-hydro 22.0 9.9E+02 0.021 25.5 12.2 40 121-161 459-499 (765)
244 TIGR00355 purH phosphoribosyla 21.9 97 0.0021 31.7 3.6 51 90-157 454-504 (511)
245 PRK00125 pyrF orotidine 5'-pho 21.9 99 0.0021 29.0 3.5 32 134-165 69-100 (278)
246 PRK08645 bifunctional homocyst 21.8 7E+02 0.015 26.0 10.0 88 97-199 475-582 (612)
247 cd02933 OYE_like_FMN Old yello 21.7 1.6E+02 0.0036 28.2 5.0 33 130-162 69-101 (338)
248 cd00950 DHDPS Dihydrodipicolin 21.6 4.8E+02 0.011 23.8 8.0 66 130-209 16-81 (284)
249 cd06569 GH20_Sm-chitobiase-lik 21.4 2.7E+02 0.0059 27.9 6.6 72 89-167 12-123 (445)
250 cd03130 GATase1_CobB Type 1 gl 21.4 3.3E+02 0.0073 23.7 6.6 75 90-169 6-90 (198)
251 smart00052 EAL Putative diguan 21.3 1.5E+02 0.0033 25.6 4.4 61 91-157 149-209 (241)
252 PRK00694 4-hydroxy-3-methylbut 21.3 2.8E+02 0.0061 29.0 6.7 53 138-191 145-197 (606)
253 PRK08445 hypothetical protein; 21.0 5.4E+02 0.012 24.7 8.5 80 99-196 143-229 (348)
254 PRK14567 triosephosphate isome 21.0 6.7E+02 0.014 23.2 9.3 85 104-197 79-198 (253)
255 PRK02048 4-hydroxy-3-methylbut 21.0 3.1E+02 0.0068 28.7 7.0 52 138-190 141-192 (611)
256 PF08357 SEFIR: SEFIR domain; 20.8 1.2E+02 0.0027 24.7 3.5 25 137-161 15-40 (150)
257 PRK12595 bifunctional 3-deoxy- 20.7 2.7E+02 0.0059 27.1 6.3 64 93-160 128-191 (360)
258 PF04028 DUF374: Domain of unk 20.6 2.7E+02 0.0059 20.7 5.0 43 104-164 27-69 (74)
259 TIGR00419 tim triosephosphate 20.6 2.1E+02 0.0045 25.6 5.1 43 104-158 75-117 (205)
260 cd00311 TIM Triosephosphate is 20.5 2.1E+02 0.0047 26.1 5.3 47 104-158 78-124 (242)
261 cd02877 GH18_hevamine_XipI_cla 20.5 2.3E+02 0.005 26.5 5.6 48 138-195 59-106 (280)
262 PRK13505 formate--tetrahydrofo 20.3 1.3E+02 0.0028 31.2 4.1 30 134-163 355-384 (557)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-84 Score=628.94 Aligned_cols=266 Identities=58% Similarity=1.049 Sum_probs=256.4
Q ss_pred ccccCCCCCCccccccccccccCCcccCCCCccccccccccC-CCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccc
Q 022079 38 DVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHI-PGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRF 116 (303)
Q Consensus 38 ~~~~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~ 116 (303)
.+.+.+||++|+||+||||||+|||+++|||++|+||++++. |+++.++.++|+|||+||+|+|||+|||++|+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 456778999999999999999999999999999999999985 5577888899999999999999999999999999999
Q ss_pred cCCcCcccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 022079 117 SISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 117 si~W~ri~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fg 195 (303)
||+||||+|.|+ .+.+|++|+++|+++|++|+++||+|+|||+|||+|++|+++||||.|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999986 3679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEe
Q 022079 196 DRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVL 275 (303)
Q Consensus 196 d~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~ 275 (303)
|+|++|+|+|||++++..||..|..|||+|+....+|..+++++++|+++|||++|||+||++||++++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999987678999999999999999999999999999999998888999999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHHhcCC
Q 022079 276 HSMMYEPLRDEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 276 ~~~~~~P~~~~~~Dv~Aa~r~~~~~~~~ 303 (303)
+..|+.|++.+++|++||+|+.+|.+||
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw 298 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGW 298 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhh
Confidence 9999999998899999999999999998
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2.6e-79 Score=607.80 Aligned_cols=279 Identities=47% Similarity=0.902 Sum_probs=246.8
Q ss_pred HHHHHhhhhccccCCCcccccccCCCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccc
Q 022079 19 QLWPVLSLAKSTCNENEQVDVKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHR 98 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~ 98 (303)
.+.|+|.+|. .+.+...+.+.+||++|+||+||||||+||++++||||+|+||.+.+ ++ ..+..++++|||||||
T Consensus 9 ~~~~~~~~~~---~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhr 83 (497)
T PLN02998 9 MFLPLLALAL---TAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHK 83 (497)
T ss_pred hHHHHHHhcc---cccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHh
Confidence 3456666653 22333335566899999999999999999999999999999999987 44 2222478899999999
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChH
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQ 178 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~ 178 (303)
|+|||++||+||+++|||||+|+||+|+|. |.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|++
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~-g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~ 162 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGR-GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQE 162 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCC-CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCch
Confidence 999999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccccCccCCCCCCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 022079 179 MQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPPTHCSAP-FGNCSAGNSDTEPLIVLHNMLLSHAKAVK 257 (303)
Q Consensus 179 ~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~~hnlllAHa~a~~ 257 (303)
+++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+... ..+|..+++.++.++++||+++|||+|++
T Consensus 163 ~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~ 242 (497)
T PLN02998 163 IVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATI 242 (497)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964311 11365555557789999999999999999
Q ss_pred HHHHhhccCCCCcEEEEecccccccCCCCHHHHHHHHHHHHHhcCC
Q 022079 258 LYRKHFQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 258 ~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~Dv~Aa~r~~~~~~~~ 303 (303)
++|+.++..++++||++++..+++|.+++|+|++||++++++.++|
T Consensus 243 ~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 288 (497)
T PLN02998 243 LYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGW 288 (497)
T ss_pred HHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhh
Confidence 9999765467899999999999999999999999999999988875
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=9.9e-79 Score=604.51 Aligned_cols=258 Identities=47% Similarity=0.887 Sum_probs=235.2
Q ss_pred ccCCCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCC
Q 022079 40 KRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSIS 119 (303)
Q Consensus 40 ~~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~ 119 (303)
.+.+||++|+||+||||||+||++++||||+|+||++++. .++.++++||||||||+|||+|||+||+++|||||+
T Consensus 24 ~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIs 99 (504)
T PLN02814 24 TRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSIS 99 (504)
T ss_pred ccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEecc
Confidence 3457999999999999999999999999999999998763 235688999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcc
Q 022079 120 WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVK 199 (303)
Q Consensus 120 W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~ 199 (303)
|+||+|+|+ |.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|+
T Consensus 100 WsRI~P~G~-g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 100 WSRLIPNGR-GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred HhhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 999999987 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccccccCccCCCCCCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeccc
Q 022079 200 YWATLNEPNLLTDMAYIRGTYPPTHCSAP-FGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSM 278 (303)
Q Consensus 200 ~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~ 278 (303)
+|+|||||++++..||..|.. ||.++.. ..+|..++..++.++++||+++|||+||+++|++++..++++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999998885 7754320 11354344456789999999999999999999976556889999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhcCC
Q 022079 279 MYEPLRDEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 279 ~~~P~~~~~~Dv~Aa~r~~~~~~~~ 303 (303)
+++|++++|+|++||++++++.++|
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~ 282 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGW 282 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988775
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=4.9e-78 Score=599.43 Aligned_cols=260 Identities=48% Similarity=0.947 Sum_probs=237.6
Q ss_pred cccCCCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccC
Q 022079 39 VKRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSI 118 (303)
Q Consensus 39 ~~~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si 118 (303)
+++.+||++|+||+||||||+||++++||||+|+||++.+.+ ++.++++||||||||+|||+|||+||+++|||||
T Consensus 25 ~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSI 100 (503)
T PLN02849 25 YSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSI 100 (503)
T ss_pred CccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEec
Confidence 455689999999999999999999999999999999998754 3467889999999999999999999999999999
Q ss_pred CcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCc
Q 022079 119 SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 119 ~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V 198 (303)
+|+||+|+|. |.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|
T Consensus 101 sWsRI~P~G~-g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrV 179 (503)
T PLN02849 101 SWSRLIPNGR-GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHV 179 (503)
T ss_pred cHHhcCcCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 9999999987 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeccc
Q 022079 199 KYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSM 278 (303)
Q Consensus 199 ~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~ 278 (303)
++|+|||||++++..||..|.+|||.+......|..+++.++.++++||+++|||+||+++|++++..++++||++++..
T Consensus 180 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~ 259 (503)
T PLN02849 180 KFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFAL 259 (503)
T ss_pred CEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECc
Confidence 99999999999999999999999996431111344344456789999999999999999999975434789999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhcCC
Q 022079 279 MYEPLRDEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 279 ~~~P~~~~~~Dv~Aa~r~~~~~~~~ 303 (303)
+++|.+++|+|++||++++++.++|
T Consensus 260 ~~~P~~~~~~D~~AA~~~~~~~~~~ 284 (503)
T PLN02849 260 GFTPSTSSKDDDIATQRAKDFYLGW 284 (503)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988775
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-77 Score=577.96 Aligned_cols=247 Identities=45% Similarity=0.819 Sum_probs=234.2
Q ss_pred CCCCCCccccccccccccCCcccCCCCcccccccccc--CCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCC
Q 022079 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSH--IPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSIS 119 (303)
Q Consensus 42 ~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~ 119 (303)
.+||++|+||+||||+|+|||+++||||+|+||+|++ .|+.+..+..++.||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4699999999999999999999999999999999999 57778888999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcc
Q 022079 120 WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVK 199 (303)
Q Consensus 120 W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~ 199 (303)
||||+|++..+++|++|+++|+++||+|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998623899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecccc
Q 022079 200 YWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMM 279 (303)
Q Consensus 200 ~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~~ 279 (303)
+|+||||||+++..||+.|.+||+..+. +.++|++||+++|||+|++++|++. ++.+|||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccCH-----------HHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 9999999999999999999999987643 7889999999999999999999973 4449999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhcC
Q 022079 280 YEPLRDEDSDRQAVSRALAFNVG 302 (303)
Q Consensus 280 ~~P~~~~~~Dv~Aa~r~~~~~~~ 302 (303)
.||.+++|+|+.||++++++++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~ 250 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNR 250 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999874
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=8.8e-76 Score=580.58 Aligned_cols=241 Identities=37% Similarity=0.678 Sum_probs=227.4
Q ss_pred CCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCCcCc
Q 022079 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPR 122 (303)
Q Consensus 43 ~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~r 122 (303)
+||++|+||+||||||+||++++||||+|+||++++.++.+ ++++||||||||+|||+|||+||+++|||||+|+|
T Consensus 4 ~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR 79 (469)
T PRK13511 4 TLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSR 79 (469)
T ss_pred CCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhh
Confidence 59999999999999999999999999999999998766543 68899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEE
Q 022079 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (303)
Q Consensus 123 i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~ 202 (303)
|+|+|+ |.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+
T Consensus 80 I~P~G~-g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 80 IFPDGY-GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred cCcCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999987 89999999999999999999999999999999999999986 9999999999999999999999999 99999
Q ss_pred EecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeccccccc
Q 022079 203 TLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEP 282 (303)
Q Consensus 203 t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~~~~P 282 (303)
|||||++++..||..|.+|||.+.. .+..++++||+++|||+||+++|++ .++++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEee
Confidence 9999999999999999999996421 1468999999999999999999986 47899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhcCC
Q 022079 283 LR-DEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 283 ~~-~~~~Dv~Aa~r~~~~~~~~ 303 (303)
.+ ++|+|++||++++++.++|
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~ 245 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKF 245 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhc
Confidence 98 8999999999999998876
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=4.7e-75 Score=574.66 Aligned_cols=241 Identities=35% Similarity=0.630 Sum_probs=225.6
Q ss_pred CCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCCcCc
Q 022079 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPR 122 (303)
Q Consensus 43 ~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~r 122 (303)
+||++|+||+|||||||||+++++|||+|+||++.+.++. .++++||||||||+|||+|||+||+++|||||+|+|
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998865543 367899999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEE
Q 022079 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (303)
Q Consensus 123 i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~ 202 (303)
|+|+|. |.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||+ |++|+
T Consensus 79 I~P~g~-~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGY-GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCC-CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999987 89999999999999999999999999999999999999987 9999999999999999999999998 99999
Q ss_pred EecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeccccccc
Q 022079 203 TLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEP 282 (303)
Q Consensus 203 t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~~~~P 282 (303)
|||||++++..||..|.+|||.+.. .++.++++||+++|||+||+++|++ .++++||++++..+++|
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P 222 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYP 222 (467)
T ss_pred EecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEE
Confidence 9999999999999999999985321 1478999999999999999999996 57899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhcCC
Q 022079 283 LR-DEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 283 ~~-~~~~Dv~Aa~r~~~~~~~~ 303 (303)
.+ ++|+|++||++++++.++|
T Consensus 223 ~~~~~~~D~~aA~~~~~~~~~~ 244 (467)
T TIGR01233 223 YDPENPADVRAAELEDIIHNKF 244 (467)
T ss_pred CCCCCHHHHHHHHHHHHHhhhc
Confidence 97 8999999999999887765
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1e-74 Score=573.49 Aligned_cols=244 Identities=33% Similarity=0.552 Sum_probs=220.7
Q ss_pred cCCCCCCccccccccccccCCcccCCCCccccccccccCCCccC--C----------C--CCCCcCCccccchHHHHHHH
Q 022079 41 RSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE--N----------N--DNGDVADDHYHRFLEDIGIM 106 (303)
Q Consensus 41 ~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~~~~eDi~l~ 106 (303)
..+||++|+||+|||||||||++++||||+|+||++++.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 35799999999999999999999999999999999887655441 1 1 15789999999999999999
Q ss_pred HHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHH
Q 022079 107 HSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL 186 (303)
Q Consensus 107 k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~y 186 (303)
|+||+++|||||+||||+|+|..|.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++||||.|+++++.|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999742569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEecCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 022079 187 AKTCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQ 264 (303)
Q Consensus 187 a~~v~~~fgd~V~~w~t~NEP~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~ 264 (303)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... ..+.++++||+++|||+|++++|+.
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~-- 229 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEV-- 229 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999888886 454 3665421 2568999999999999999999985
Q ss_pred cCCCCcEEEEecccccccCCCCHHHHHHHHHHHH
Q 022079 265 EKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALA 298 (303)
Q Consensus 265 ~~~~~~IGi~~~~~~~~P~~~~~~Dv~Aa~r~~~ 298 (303)
.|+++||++++..+++|.+++|+|++||++++.
T Consensus 230 -~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~ 262 (478)
T PRK09593 230 -DPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDR 262 (478)
T ss_pred -CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999998774
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=6e-74 Score=567.74 Aligned_cols=243 Identities=33% Similarity=0.594 Sum_probs=216.9
Q ss_pred CCCCCccccccccccccCCcccCCCCccccccccc---c-CCCccC----CCC--CCCcCCccccchHHHHHHHHHcCCC
Q 022079 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NND--NGDVADDHYHRFLEDIGIMHSLGVN 112 (303)
Q Consensus 43 ~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~~~~eDi~l~k~lG~~ 112 (303)
+||++|+||+||||||+||++++||||+|+||++. + .|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 3 244442 222 5789999999999999999999999
Q ss_pred cccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHH
Q 022079 113 SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFE 192 (303)
Q Consensus 113 ~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~ 192 (303)
+|||||+|+||+|+|..|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999742568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEEecCCcccccc-----ccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022079 193 NFGDRVKYWATLNEPNLLTDM-----AYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQE 265 (303)
Q Consensus 193 ~fgd~V~~w~t~NEP~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~ 265 (303)
+|||+|++|+|||||++++.. ||. .|. +|||... ....++++||+++|||+|++++|++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~--- 228 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEI--- 228 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999999999998766 443 343 2554321 2457999999999999999999986
Q ss_pred CCCCcEEEEecccccccCCCCHHHHHHHHHHHHH
Q 022079 266 KQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALAF 299 (303)
Q Consensus 266 ~~~~~IGi~~~~~~~~P~~~~~~Dv~Aa~r~~~~ 299 (303)
.++++||++++..+++|.+++|+|++||++++++
T Consensus 229 ~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~ 262 (476)
T PRK09589 229 NPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR 262 (476)
T ss_pred CCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999999998854
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2e-74 Score=569.68 Aligned_cols=246 Identities=51% Similarity=0.932 Sum_probs=223.5
Q ss_pred CCCCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCCcC
Q 022079 42 SDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWP 121 (303)
Q Consensus 42 ~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ 121 (303)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||+|+|||++||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 46999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cccccC-CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcce
Q 022079 122 RILPKG-RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKY 200 (303)
Q Consensus 122 ri~P~~-~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~ 200 (303)
||+|+| . |.+|++++++|+++|+.|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||++|+++|||+|++
T Consensus 83 Ri~P~g~~-g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFE-GKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSS-SSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeecccc-cccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999998 5 9999999999999999999999999999999999999998 699999999999999999999999999999
Q ss_pred EEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeccccc
Q 022079 201 WATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMY 280 (303)
Q Consensus 201 w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~~~ 280 (303)
|+|||||++.+..||..|.+|||..+ .++.++++|||++||++|++++|+++ ++++||++++..++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~ 226 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPF 226 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccccc
Confidence 99999999999999999999999554 36889999999999999999999974 89999999999999
Q ss_pred ccCCCCHHHH-HHHHHHHHHhcCC
Q 022079 281 EPLRDEDSDR-QAVSRALAFNVGW 303 (303)
Q Consensus 281 ~P~~~~~~Dv-~Aa~r~~~~~~~~ 303 (303)
+|.+++++|+ +||++.+++.++|
T Consensus 227 ~P~~~~~~d~~~Aa~~~~~~~n~~ 250 (455)
T PF00232_consen 227 YPLSPSPEDDVAAAERADEFHNGW 250 (455)
T ss_dssp EESSSSHHHHHHHHHHHHHHHTHH
T ss_pred CCCCccchhhHHHHHHHHHHhhcc
Confidence 9999988766 8899999988765
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=4.3e-73 Score=561.48 Aligned_cols=245 Identities=32% Similarity=0.564 Sum_probs=219.6
Q ss_pred ccCCCCCCccccccccccccCCcccCCCCccccccccc---c-CCCccC----CC--CCCCcCCccccchHHHHHHHHHc
Q 022079 40 KRSDFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFS---H-IPGNIE----NN--DNGDVADDHYHRFLEDIGIMHSL 109 (303)
Q Consensus 40 ~~~~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~~~~eDi~l~k~l 109 (303)
++.+||++|+||+||||||+||++++||||+|+||+++ + .|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 34579999999999999999999999999999999988 3 244431 22 26789999999999999999999
Q ss_pred CCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHH
Q 022079 110 GVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKT 189 (303)
Q Consensus 110 G~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~ 189 (303)
|+++|||||+|+||+|+|..+.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999742569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEEEecCCccc-----ccccccc-Ccc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 022079 190 CFENFGDRVKYWATLNEPNLL-----TDMAYIR-GTY-PPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKH 262 (303)
Q Consensus 190 v~~~fgd~V~~w~t~NEP~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~ 262 (303)
|+++|||+|++|+|||||++. +..||.. |.+ ||+.. ...+.++++||+++|||+|++++|+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6778874 665 44321 12468999999999999999999986
Q ss_pred hccCCCCcEEEEecccccccCCCCHHHHHHHHHHHH
Q 022079 263 FQEKQGGSMGIVLHSMMYEPLRDEDSDRQAVSRALA 298 (303)
Q Consensus 263 ~~~~~~~~IGi~~~~~~~~P~~~~~~Dv~Aa~r~~~ 298 (303)
.++++||++++..+++|.+++|+|++||++++.
T Consensus 231 ---~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~ 263 (477)
T PRK15014 231 ---NPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR 263 (477)
T ss_pred ---CCCCeEEEEEeCceeccCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999998764
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3.5e-72 Score=554.35 Aligned_cols=241 Identities=34% Similarity=0.576 Sum_probs=220.2
Q ss_pred CCCCCccccccccccccCCcccCCCCccccccccccCCCccC------------CC--CCCCcCCccccchHHHHHHHHH
Q 022079 43 DFPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIE------------NN--DNGDVADDHYHRFLEDIGIMHS 108 (303)
Q Consensus 43 ~fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~------------~~--~~~~~a~d~y~~~~eDi~l~k~ 108 (303)
+||++|+||+||||||+||++++||||+|+||++++.++++. ++ .++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999988666542 22 2678999999999999999999
Q ss_pred cCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHH
Q 022079 109 LGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK 188 (303)
Q Consensus 109 lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~ 188 (303)
+|+|+|||||+|+||+|+|..+.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974256899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEecCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022079 189 TCFENFGDRVKYWATLNEPNLLTDMAYI-RGT-YPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEK 266 (303)
Q Consensus 189 ~v~~~fgd~V~~w~t~NEP~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~ 266 (303)
.|+++|||+|++|+|||||++++..||. .|. +||+... ....++++||+++|||+|++++|++ .
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~---~ 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEV---N 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 9999999999999999999999999996 565 4776422 2468999999999999999999986 4
Q ss_pred CCCcEEEEecccccccCCCCHHHHHHHHHHH
Q 022079 267 QGGSMGIVLHSMMYEPLRDEDSDRQAVSRAL 297 (303)
Q Consensus 267 ~~~~IGi~~~~~~~~P~~~~~~Dv~Aa~r~~ 297 (303)
++++||++++..+++|.+++|+|++||++++
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~ 259 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD 259 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH
Confidence 6889999999999999999999999998766
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=2.2e-71 Score=543.69 Aligned_cols=244 Identities=47% Similarity=0.840 Sum_probs=230.6
Q ss_pred CCCCccccccccccccCCcccCCCCccccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCCcCcc
Q 022079 44 FPDGFLFGTATSSFQVEGAYLEDGKSLSNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRI 123 (303)
Q Consensus 44 fP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri 123 (303)
||++|+||+||||+|+||+++++|||+|+||++.+.++++.++.++++||||||+|+|||++||++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988777766677889999999999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEE
Q 022079 124 LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWAT 203 (303)
Q Consensus 124 ~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t 203 (303)
+|+|+ |.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g~-~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGT-GPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCC-CCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 99977 89999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEecccccccC
Q 022079 204 LNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAKAVKLYRKHFQEKQGGSMGIVLHSMMYEPL 283 (303)
Q Consensus 204 ~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~a~~~~r~~~~~~~~~~IGi~~~~~~~~P~ 283 (303)
+|||++.+..||..|.+||+.++. ...++++|||++|||+|++++|++ .++++||++++..+++|.
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~~~hnll~Aha~A~~~~~~~---~~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQAAHHLLLAHGLAVQALRAN---GPGAQVGIVLNLTPVYPA 224 (427)
T ss_pred ecCcceecccchhhccCCCCCccH-----------HHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeeeC
Confidence 999999999999999899985431 457899999999999999999996 478999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCC
Q 022079 284 RDEDSDRQAVSRALAFNVGW 303 (303)
Q Consensus 284 ~~~~~Dv~Aa~r~~~~~~~~ 303 (303)
+++|+|+.||++++++.++|
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~ 244 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRW 244 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999888775
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.44 E-value=2e-13 Score=131.96 Aligned_cols=108 Identities=27% Similarity=0.463 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHcCCCcccc-cCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh----
Q 022079 97 HRFLEDIGIMHSLGVNSYRF-SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---- 171 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~-si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~---- 171 (303)
+.+++|+++|+++|+|++|+ .++|+++||++ |.+| ++.+|++|+.+.++||++++.+.....|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e--G~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE--GQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT--TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC--Ceee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46999999999999999996 57999999995 9999 77899999999999999999999889999998653
Q ss_pred -----------CC-----CCChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCcc
Q 022079 172 -----------GS-----WLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (303)
Q Consensus 172 -----------gg-----w~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~~ 209 (303)
|+ ..+|...+.+.++++.+++||++. |-.|.+.|||..
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 11 235678888999999999999986 789999999976
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.39 E-value=8.4e-13 Score=120.72 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=90.6
Q ss_pred chHHHHHHHHHcCCCcccccCCcCccc-ccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCC-C
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRIL-PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW-L 175 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~-P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw-~ 175 (303)
..++|++.|+++|+|++|+.+.|..++ |.+. +.++...++.++++|+.|.++||.++|++|+. |.|.... ++. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~-~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG-YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT-TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC-ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 578999999999999999999998888 5643 56999999999999999999999999999864 7774322 233 3
Q ss_pred ChHhHHHHHHHHHHHHHHhCC--CcceEEEecCCccc
Q 022079 176 SPQMQKEFVHLAKTCFENFGD--RVKYWATLNEPNLL 210 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd--~V~~w~t~NEP~~~ 210 (303)
.+...+.|.++++.++++|++ .|..|.++|||+..
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345678899999999999955 58899999999875
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.88 E-value=6.6e-09 Score=95.56 Aligned_cols=84 Identities=17% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCee--EEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 022079 118 ISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP--FVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 118 i~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p--ivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fg 195 (303)
+.|.+++|++ |.+| ++..|++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~--G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR--GQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC--CccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999995 9999 677899999999999995 3456677899998642 2 56778999999999999999
Q ss_pred CCcceEEEecCCccc
Q 022079 196 DRVKYWATLNEPNLL 210 (303)
Q Consensus 196 d~V~~w~t~NEP~~~ 210 (303)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999853
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=4e-08 Score=101.05 Aligned_cols=118 Identities=20% Similarity=0.382 Sum_probs=90.7
Q ss_pred chHHHHHHHHHcCCCcccc-cCCcCcccccCCCCCCChhHHHHHHHH-HHHHHHcCCeeEEee-cCCCCchHHHHhh---
Q 022079 98 RFLEDIGIMHSLGVNSYRF-SISWPRILPKGRFGKVNPAGINFYNYL-IDNLLLRGIEPFVTI-YHHDFPQQLEEKY--- 171 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~-si~W~ri~P~~~~g~~n~~~~~~y~~~-i~~l~~~GI~pivtL-~H~~~P~wl~~~~--- 171 (303)
-+++|++.||++|+|++|. -++|++++|+. |++|.. +.|.. ++.+.+.||.+++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE--GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc--cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 3889999999999999999 55999999995 999954 67777 999999999999999 7788999998764
Q ss_pred ------------CCCCC-----hHhHHHHHHHHHHHHHH-hCCC--cceEEEecCCcc-ccccccccCcc
Q 022079 172 ------------GSWLS-----PQMQKEFVHLAKTCFEN-FGDR--VKYWATLNEPNL-LTDMAYIRGTY 220 (303)
Q Consensus 172 ------------ggw~~-----~~~~~~F~~ya~~v~~~-fgd~--V~~w~t~NEP~~-~~~~gy~~g~~ 220 (303)
++|.+ +-..+.-..+.+.+.+| |++. |-.|.+-||-.. .++..|+.+.|
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 55643 32333333344458888 8775 889999998776 45544444433
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=9.8e-07 Score=86.67 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccC--CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh---CCC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKG--RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY---GSW 174 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~--~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~---ggw 174 (303)
++|+..||+.|+|++|+.+.|..+++.+ .....+...+...+++|+.+++.||.+++++|++.-+.--.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999966665542 10223234455999999999999999999999865222211110 112
Q ss_pred C-ChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCcc
Q 022079 175 L-SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (303)
Q Consensus 175 ~-~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~~ 209 (303)
. ..+.++++.+-+++++.||++. |-...++|||+-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3457899999999999999984 555689999985
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.28 E-value=2.4e-06 Score=85.72 Aligned_cols=106 Identities=25% Similarity=0.462 Sum_probs=65.1
Q ss_pred hHHHHHHHH-HcCCCccccc--C--CcCcccc-cCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHh
Q 022079 99 FLEDIGIMH-SLGVNSYRFS--I--SWPRILP-KGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (303)
Q Consensus 99 ~~eDi~l~k-~lG~~~~R~s--i--~W~ri~P-~~~~g~--~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~ 170 (303)
+.+.+..++ ++|++.+||- + +..-..+ .+. |. +| +...|+++|.++++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~-~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED-GIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT-EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC-CCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 666666665 9999999986 2 2222322 222 32 67 788999999999999999999964 67766421
Q ss_pred ------hCCCC-ChHhHHHHHHHHHHHHHHhCC-----Ccc--eEEEecCCccc
Q 022079 171 ------YGSWL-SPQMQKEFVHLAKTCFENFGD-----RVK--YWATLNEPNLL 210 (303)
Q Consensus 171 ------~ggw~-~~~~~~~F~~ya~~v~~~fgd-----~V~--~w~t~NEP~~~ 210 (303)
+.|+. .|...+.|.++++.+++||.+ .|. +|++||||++.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 356778888888777666543 366 45899999974
No 20
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.86 E-value=4.9e-05 Score=72.47 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=77.5
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------CCCCchHHHH
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--------HHDFPQQLEE 169 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--------H~~~P~wl~~ 169 (303)
.|++-++.||++|+|++-+-+.|.-.||.+ |++|.++..=.+++|+.++++||.+++-.= .-++|.|+..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT--TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC--CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 478889999999999999999999999995 999999888899999999999999877642 1258999987
Q ss_pred hhCCC---CChHhHHHHHHHHHHHHHHhCC-------CcceEEEecCCc
Q 022079 170 KYGSW---LSPQMQKEFVHLAKTCFENFGD-------RVKYWATLNEPN 208 (303)
Q Consensus 170 ~~ggw---~~~~~~~~F~~ya~~v~~~fgd-------~V~~w~t~NEP~ 208 (303)
+.+.. .++...+.-.+|.+.+++...+ -|-..++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 53332 2466677777777777666533 477889999987
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.68 E-value=0.00013 Score=69.41 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=68.2
Q ss_pred ccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE--EeecCCCCchHHHHhhCCCCChH---hHHHHHHHHHHH
Q 022079 116 FSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF--VTIYHHDFPQQLEEKYGSWLSPQ---MQKEFVHLAKTC 190 (303)
Q Consensus 116 ~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi--vtL~H~~~P~wl~~~~ggw~~~~---~~~~F~~ya~~v 190 (303)
-...|..++|.+ |.+| ++..|++++-++++||++- ..+.|--+|.|+... .-+...+ ..+...+|.+.+
T Consensus 42 N~~Kw~~~e~~~--g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v 115 (320)
T PF00331_consen 42 NEMKWGSIEPEP--GRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTV 115 (320)
T ss_dssp STTSHHHHESBT--TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcCCC--CccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHH
Confidence 347899999995 9999 6678999999999999987 345566789999753 1233333 788899999999
Q ss_pred HHHhC--CCcceEEEecCCccc
Q 022079 191 FENFG--DRVKYWATLNEPNLL 210 (303)
Q Consensus 191 ~~~fg--d~V~~w~t~NEP~~~ 210 (303)
++||+ .+|..|-+.|||-..
T Consensus 116 ~~~y~~~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 116 VTRYKDKGRIYAWDVVNEAIDD 137 (320)
T ss_dssp HHHTTTTTTESEEEEEES-B-T
T ss_pred HhHhccccceEEEEEeeecccC
Confidence 99999 489999999999754
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.49 E-value=0.003 Score=60.59 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHH----hhCCCC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE----KYGSWL 175 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~----~~ggw~ 175 (303)
++=+++||+.|+|++|+-+ | +.|... |..| ++...++.++++++||+++|++|-=| .|... +=..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~-g~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~WaDPg~Q~~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDG-GYND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWADPGKQNKPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTT-TTTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S--BTTB-B--TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCccc-ccCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCCCCCCCCCCccCC
Confidence 3457999999999999977 4 334322 5566 77889999999999999999997422 23210 114687
Q ss_pred C---hHhHHHHHHHHHHHHHHhCC---CcceEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 022079 176 S---PQMQKEFVHLAKTCFENFGD---RVKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNML 249 (303)
Q Consensus 176 ~---~~~~~~F~~ya~~v~~~fgd---~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnll 249 (303)
+ .+..+.-.+|.+.+.+.+++ .++++++=||.+...+ +|.|.. .-+.-.--++
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll 156 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLL 156 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHH
Confidence 7 56778888899888777754 5899999999875322 444432 2233344555
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEec
Q 022079 250 LSHAKAVKLYRKHFQEKQGGSMGIVLH 276 (303)
Q Consensus 250 lAHa~a~~~~r~~~~~~~~~~IGi~~~ 276 (303)
.|-.+|+|. . .|+.+|-+.+.
T Consensus 157 ~ag~~AVr~---~---~p~~kV~lH~~ 177 (332)
T PF07745_consen 157 NAGIKAVRE---V---DPNIKVMLHLA 177 (332)
T ss_dssp HHHHHHHHT---H---SSTSEEEEEES
T ss_pred HHHHHHHHh---c---CCCCcEEEEEC
Confidence 555555554 3 46677766654
No 23
>PLN03059 beta-galactosidase; Provisional
Probab=97.42 E-value=0.0008 Score=71.06 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------CCCCchHHH
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--------HHDFPQQLE 168 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--------H~~~P~wl~ 168 (303)
+.|++-++.||++|+|++-.=+.|.--||.+ |++|.++..=..++|+.+.+.||-+|+-.- .-++|.||.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~--G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~ 136 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP--GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLK 136 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC--CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhh
Confidence 3488889999999999999999999999995 999999999999999999999999888643 347899997
Q ss_pred HhhCCC----CChHhHHHHHHHHHHHHHHhC---------CCcceEEEecCCcc
Q 022079 169 EKYGSW----LSPQMQKEFVHLAKTCFENFG---------DRVKYWATLNEPNL 209 (303)
Q Consensus 169 ~~~ggw----~~~~~~~~F~~ya~~v~~~fg---------d~V~~w~t~NEP~~ 209 (303)
.. .|. .++.+.++-.+|.+.+++... +-|-..++=||-..
T Consensus 137 ~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 137 YV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred cC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 54 442 256677777788888877763 34677788888654
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.20 E-value=0.00054 Score=66.80 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=74.8
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CCC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HDF 163 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~~ 163 (303)
+.-.+.+++.+|++|++.+-+.+=|--+|+.++ +++| ++.|+++++.+++.|++..+.|. | ..+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p-~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP-QQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST-TB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC-CccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 447889999999999999999999999999976 8999 77899999999999999888663 2 368
Q ss_pred chHHHHh-----------hCC--------CCChHhHHHHHHHHHHHHHHhCCCc
Q 022079 164 PQQLEEK-----------YGS--------WLSPQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 164 P~wl~~~-----------~gg--------w~~~~~~~~F~~ya~~v~~~fgd~V 198 (303)
|.|+.+. .|. |....+++.+.+|-+.+.++|.+..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998642 122 3333348899999998888886653
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.17 E-value=0.002 Score=60.61 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=64.4
Q ss_pred hHHHHHHHHHcCCCcccccC--CcCcc--------ccc--CCC-----CCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI--SWPRI--------LPK--GRF-----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si--~W~ri--------~P~--~~~-----g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
.+.-++..|+-|+|.+|+.+ .|... .|- .+. ..+|++.+++.|++|+.|.+.||++.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447788999999999998 45543 111 000 1388999999999999999999999887654
Q ss_pred CCchHHHHhhCCCCC---hHhHHHHHHHHHHHHHHhCCC-cceEEEecCC
Q 022079 162 DFPQQLEEKYGSWLS---PQMQKEFVHLAKTCFENFGDR-VKYWATLNEP 207 (303)
Q Consensus 162 ~~P~wl~~~~ggw~~---~~~~~~F~~ya~~v~~~fgd~-V~~w~t~NEP 207 (303)
+.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44532 224677888999999999998 4889999997
No 26
>PLN02161 beta-amylase
Probab=97.16 E-value=0.0011 Score=66.16 Aligned_cols=102 Identities=12% Similarity=0.208 Sum_probs=79.3
Q ss_pred CccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-CC----------
Q 022079 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-HH---------- 161 (303)
Q Consensus 93 ~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H~---------- 161 (303)
..+....+..++.+|.+|++.+-+.+=|--+|++++ +++| |..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP-LEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC-CcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 456677899999999999999999999999999877 9999 77899999999999999777765 32
Q ss_pred -CCchHHHHh--------h---CCCCC----------------hHhHHHHHHHHHHHHHHhCCCc
Q 022079 162 -DFPQQLEEK--------Y---GSWLS----------------PQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 162 -~~P~wl~~~--------~---ggw~~----------------~~~~~~F~~ya~~v~~~fgd~V 198 (303)
.+|.|+.+. | .|..| +.-++.|.+|-+.+..+|.+..
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 489998652 0 22211 2234678888888777776644
No 27
>PLN02803 beta-amylase
Probab=97.16 E-value=0.00098 Score=66.76 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=76.4
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CCC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HDF 163 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~~ 163 (303)
-.-.+..++.+|.+|++.+-+.+=|--+|++++ +++| |..|+++++.+++.|++..+.|. | ..+
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p-~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGP-MKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC-CcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 355788999999999999999999999999877 9999 77899999999999999877765 3 258
Q ss_pred chHHHHh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCc
Q 022079 164 PQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 164 P~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~fgd~V 198 (303)
|.|+.+. | .|-. .+.-++.|.+|-+.+..+|.+..
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9998652 1 1211 12234677788777777776644
No 28
>PLN00197 beta-amylase; Provisional
Probab=97.06 E-value=0.0017 Score=65.40 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=77.2
Q ss_pred cccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 022079 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HD 162 (303)
Q Consensus 95 ~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~ 162 (303)
.-.-.+..++.+|.+|++.+-+.+=|--+|++++ +++| |..|+++++.+++.|++..+.|. | ..
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p-~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESP-GVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 3445889999999999999999999999999877 9999 67799999999999999877765 3 25
Q ss_pred CchHHHHh--------h---CCCCC----------------hHhHHHHHHHHHHHHHHhCCCc
Q 022079 163 FPQQLEEK--------Y---GSWLS----------------PQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 163 ~P~wl~~~--------~---ggw~~----------------~~~~~~F~~ya~~v~~~fgd~V 198 (303)
+|.|+.+. | .|..| +.-++.|.+|-+.+..+|.+.+
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 263 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL 263 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89998652 0 12111 1125788888888777776643
No 29
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.96 E-value=0.0013 Score=63.82 Aligned_cols=101 Identities=20% Similarity=0.368 Sum_probs=55.1
Q ss_pred HHcCCCcccccC---C------------cCccc--ccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHH
Q 022079 107 HSLGVNSYRFSI---S------------WPRIL--PKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE 169 (303)
Q Consensus 107 k~lG~~~~R~si---~------------W~ri~--P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~ 169 (303)
+.+|++.+|+.| + |.|.+ +..+ |.+|+.+=+-=+.++++++++|+..++.. -...|.|+..
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~d-g~yDW~~D~gQrwfL~~Ak~rGV~~f~aF-SNSPP~~MT~ 134 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPAD-GSYDWDADAGQRWFLKAAKERGVNIFEAF-SNSPPWWMTK 134 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TT-S-B-TTSSHHHHHHHHHHHHTT---EEEE--SSS-GGGSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCC-CCcCCCCCHHHHHHHHHHHHcCCCeEEEe-ecCCCHHHhc
Confidence 358888888876 2 33432 2223 77776544455668999999999988854 4677777754
Q ss_pred hh---CC-----CCChHhHHHHHHHHHHHHHHhCC---CcceEEEecCCcc
Q 022079 170 KY---GS-----WLSPQMQKEFVHLAKTCFENFGD---RVKYWATLNEPNL 209 (303)
Q Consensus 170 ~~---gg-----w~~~~~~~~F~~ya~~v~~~fgd---~V~~w~t~NEP~~ 209 (303)
.. |+ =..++..+.|++|...|+++|.. .+++-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 21 11 13467899999999999999933 5899999999983
No 30
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.92 E-value=0.005 Score=57.68 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=63.2
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhC---
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG--- 172 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~g--- 172 (303)
.+.++.|+.+||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~------~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP------S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC------c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 56799999999999999999843 122 1 456778889999988776431111111 001
Q ss_pred -CCCChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCc
Q 022079 173 -SWLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (303)
Q Consensus 173 -gw~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~ 208 (303)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~ 133 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD 133 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc
Confidence 0135778888888899999999886 89999999994
No 31
>PLN02905 beta-amylase
Probab=96.87 E-value=0.0036 Score=63.84 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------C
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------H 161 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~ 161 (303)
....-.+..++.+|.+|++.+-+.+=|--+|+.++ ++|| |..|+++++.+++.|++..+.|. | .
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP-~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP-QEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC-CcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 45666889999999999999999999999999877 9999 67899999999999999877765 3 2
Q ss_pred CCchHHHH
Q 022079 162 DFPQQLEE 169 (303)
Q Consensus 162 ~~P~wl~~ 169 (303)
.+|.|+.+
T Consensus 359 PLP~WV~e 366 (702)
T PLN02905 359 PLPHWVAE 366 (702)
T ss_pred cCCHHHHH
Confidence 58999865
No 32
>PLN02801 beta-amylase
Probab=96.86 E-value=0.0047 Score=61.67 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=78.3
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------C
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------H 161 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~ 161 (303)
.+-.-.+..++.+|.+|++.+-+.+=|--+|..++ +++| |+.|+++++.+++.|++..+.|. | .
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP-KQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC-CccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 34455889999999999999999999999999877 9999 67799999999999999877665 2 2
Q ss_pred CCchHHHHh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCc
Q 022079 162 DFPQQLEEK--------Y---GSWL----------------SPQMQKEFVHLAKTCFENFGDRV 198 (303)
Q Consensus 162 ~~P~wl~~~--------~---ggw~----------------~~~~~~~F~~ya~~v~~~fgd~V 198 (303)
.+|.|+.+. | .|-. .+.-++.+.+|-+.+..+|.+..
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 589998752 0 1211 12235788888888877776654
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.0032 Score=59.72 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=69.9
Q ss_pred cCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe--ecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHh
Q 022079 117 SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT--IYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENF 194 (303)
Q Consensus 117 si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt--L~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~f 194 (303)
-.-|.-|+|+ + |.+| ++.-|.+.+-++++||..--- +.|--.|.|+.. .-+..+...+...++...|++||
T Consensus 66 emKwe~i~p~-~-G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 66 EMKWEAIEPE-R-GRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred ccccccccCC-C-CccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4569999998 4 9999 555789999999999974321 234567999853 23777889999999999999999
Q ss_pred CCCcceEEEecCCcc
Q 022079 195 GDRVKYWATLNEPNL 209 (303)
Q Consensus 195 gd~V~~w~t~NEP~~ 209 (303)
++.|..|-+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999975
No 34
>PLN02705 beta-amylase
Probab=96.73 E-value=0.0047 Score=62.79 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred cccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 022079 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-H-----------HD 162 (303)
Q Consensus 95 ~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H-----------~~ 162 (303)
+-.-.+..++.+|.+|++.+-+.+=|--+|++++ ++|| |..|+++++.+++.|++..+.|. | ..
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P-~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP-QKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC-CcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 3455889999999999999999999999999877 9999 77899999999999999777765 3 25
Q ss_pred CchHHHHh--------h---CCCCC----------------hHhHHHHHHHHHHHHHHhCCC
Q 022079 163 FPQQLEEK--------Y---GSWLS----------------PQMQKEFVHLAKTCFENFGDR 197 (303)
Q Consensus 163 ~P~wl~~~--------~---ggw~~----------------~~~~~~F~~ya~~v~~~fgd~ 197 (303)
+|.|+.+. | .|..| +.-++.|.+|.+.+...|.+.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89998752 0 12111 123477778877777776553
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.38 E-value=0.012 Score=60.56 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHH-------
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE------- 169 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~------- 169 (303)
..+..|+++||++|+|++|++- .|.. .++++.|-+.||-++.-+.-++...|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4578899999999999999952 2331 35678889999988865532222222210
Q ss_pred hhCCCC----ChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCc
Q 022079 170 KYGSWL----SPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (303)
Q Consensus 170 ~~ggw~----~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~ 208 (303)
....|. +|+..+.+.+-++.+++|+.++ |-.|.+-||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3567788889999999999997 78999999984
No 36
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.037 Score=56.86 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=87.6
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------CCCCchHHH
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--------HHDFPQQLE 168 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--------H~~~P~wl~ 168 (303)
+.|++-|+.+|++|+|++-.=+.|.-.||.+ |++|.++-.=..++|..+++.|+-+++-+- +-++|.||.
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~--g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPSP--GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCCC--CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 4488889999999999999999999999995 999999877788899999999998766542 457898887
Q ss_pred HhhCCC----CChHhHHHHHHHHHHHHHHh-------CCCcceEEEecCCc
Q 022079 169 EKYGSW----LSPQMQKEFVHLAKTCFENF-------GDRVKYWATLNEPN 208 (303)
Q Consensus 169 ~~~ggw----~~~~~~~~F~~ya~~v~~~f-------gd~V~~w~t~NEP~ 208 (303)
.. .|- .|+.+..++.+|.+.++..- |+=|-.-++=||-.
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 65 442 36778888888888887732 44467778888876
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.10 E-value=0.038 Score=47.89 Aligned_cols=103 Identities=16% Similarity=0.336 Sum_probs=66.0
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcc-----cccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHh
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRI-----LPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri-----~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~ 170 (303)
.+|+++++.|+++|++.+=+. |+.. .|+.- .+.+.....+.++.+++.+.+.||++++.|+. -|.|..+
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 469999999999999987432 3333 22210 01222234578999999999999999999963 4666552
Q ss_pred hCCCCChH-hHHHHHHHHHHHHHHhCCC--cceEEEecCCc
Q 022079 171 YGSWLSPQ-MQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (303)
Q Consensus 171 ~ggw~~~~-~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~ 208 (303)
.+.+ -++.=..-++.+.++||.+ +..|=+=.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2333344677888899885 44555555543
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.78 E-value=0.11 Score=57.12 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=64.4
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec---CCCCchHHHHhhC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFPQQLEEKYG 172 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H~~~P~wl~~~~g 172 (303)
...+++||++||++|+|++|++ ..|.. .++.+.|-+.||-++--.. |.-.|. . .
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 5678999999999999999995 23331 2456788899998877642 111110 0 0
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCc
Q 022079 173 SWLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (303)
Q Consensus 173 gw~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~ 208 (303)
...+++..+.+.+=++.+++|.+++ |-.|.+-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124666777777788999999997 88999999975
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.13 E-value=0.2 Score=55.03 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec---C-CCCchHHHHhh
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---H-HDFPQQLEEKY 171 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H-~~~P~wl~~~~ 171 (303)
.+.+++|+++||++|+|++|++ ..|.. ..+.+.|-+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHCCCEEEECCcccccCccccc----cc
Confidence 4678999999999999999986 24442 2457788899998776531 1 11100 00
Q ss_pred CCC--CChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCc
Q 022079 172 GSW--LSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPN 208 (303)
Q Consensus 172 ggw--~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~ 208 (303)
.+ .+|+..+.|.+=++.+++|.+++ |-.|.+-||..
T Consensus 412 -~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 -SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred -ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 01 23455667777788999999997 88999999974
No 40
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.64 E-value=0.29 Score=52.30 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=67.5
Q ss_pred cccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCC
Q 022079 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW 174 (303)
Q Consensus 95 ~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw 174 (303)
.+..+.+|+++||++|+|++|.| -.|.. .++.+.|-+.||-++=...... +++.
T Consensus 319 ~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------------~~~ydLcDelGllV~~Ea~~~~--------~~~~ 372 (808)
T COG3250 319 DEDAMERDLKLMKEANMNSVRTS-----HYPNS-------------EEFYDLCDELGLLVIDEAMIET--------HGMP 372 (808)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------------HHHHHHHHHhCcEEEEecchhh--------cCCC
Confidence 35569999999999999999998 45552 3456778889998887654311 2444
Q ss_pred CChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCcc
Q 022079 175 LSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (303)
Q Consensus 175 ~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~~ 209 (303)
..++..+...+=++++++|-+++ |-.|.+-||...
T Consensus 373 ~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 373 DDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 55666777777788999999886 899999999663
No 41
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.68 E-value=3.1 Score=39.62 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCCcccccCCcCccccc-CCC--CCCChhHHHHHHHHHHHHHHcCCeeEEeecC---CCCchHHHHhhCCC
Q 022079 101 EDIGIMHSLGVNSYRFSISWPRILPK-GRF--GKVNPAGINFYNYLIDNLLLRGIEPFVTIYH---HDFPQQLEEKYGSW 174 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri~P~-~~~--g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H---~~~P~wl~~~~ggw 174 (303)
+-++.+|+.|+|.+|+-| |-.=..+ |.. |..| .++.--++-+++++.||++++++|. |.=|.. +++-..|
T Consensus 67 D~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW 142 (403)
T COG3867 67 DALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAW 142 (403)
T ss_pred HHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHh
Confidence 346999999999999865 2111111 110 2222 2556677788899999999999873 333432 1111346
Q ss_pred CC---hHhHHHHHHHHHHHHHHh---CCCcceEEEecCCc
Q 022079 175 LS---PQMQKEFVHLAKTCFENF---GDRVKYWATLNEPN 208 (303)
Q Consensus 175 ~~---~~~~~~F~~ya~~v~~~f---gd~V~~w~t~NEP~ 208 (303)
.+ +....+--+|.+.+...+ |-.++..++=||-|
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccC
Confidence 54 233444555666665555 44577788999976
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.77 E-value=0.28 Score=48.10 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred HHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCC--hHhHHHH
Q 022079 106 MHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS--PQMQKEF 183 (303)
Q Consensus 106 ~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~--~~~~~~F 183 (303)
-+|+|++.+|.---|.-++.. =.++ +.++|+++|.+...|+.-+.+-.|+..+.-....|.+=.. ....+.+
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~---~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK---LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhhceeeehhcceeeeeecc---ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 458999999998888833222 2344 6789999999999996555556676666544333333222 2478999
Q ss_pred HHHHHHHHHHhCCC-cceE--EEecCCcccc
Q 022079 184 VHLAKTCFENFGDR-VKYW--ATLNEPNLLT 211 (303)
Q Consensus 184 ~~ya~~v~~~fgd~-V~~w--~t~NEP~~~~ 211 (303)
+.++..|+.+||-+ |.-| .++||||..+
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 99999999999975 6666 7999999865
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.60 E-value=5.9 Score=37.68 Aligned_cols=100 Identities=21% Similarity=0.391 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHHcCCCcccccCCc-------CcccccCC--CCCCC-hhHHHHHHHHHHHHHHcCCeeEEee----cC-
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISW-------PRILPKGR--FGKVN-PAGINFYNYLIDNLLLRGIEPFVTI----YH- 160 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W-------~ri~P~~~--~g~~n-~~~~~~y~~~i~~l~~~GI~pivtL----~H- 160 (303)
-...++-++.++++|+|++=+.+.+ |.++|... .|... ..+.+.+..+|++++++||++..=+ ..
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3457888999999999987665543 33444210 02111 1257889999999999999987544 10
Q ss_pred ------CCCchHHHHh-------h----CC--CC---ChHhHHHHHHHHHHHHHHhC
Q 022079 161 ------HDFPQQLEEK-------Y----GS--WL---SPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 161 ------~~~P~wl~~~-------~----gg--w~---~~~~~~~F~~ya~~v~~~fg 195 (303)
-..|.|+..+ + ++ |. +|++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 22 43 57899999999999999994
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.25 E-value=0.075 Score=53.01 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred chHHHHHHHHHcCCCcccccCCc-CcccccCCCCCCChhH-HHHHHHHHHHHHHcCCeeEEeec----CCCCchHHHHhh
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISW-PRILPKGRFGKVNPAG-INFYNYLIDNLLLRGIEPFVTIY----HHDFPQQLEEKY 171 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W-~ri~P~~~~g~~n~~~-~~~y~~~i~~l~~~GI~pivtL~----H~~~P~wl~~~~ 171 (303)
-.+.|++.++.+|++..|++|-= ..+-.. . |..|.+. +.+.+.+++.+...+|++++||. |++--.|-..=.
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~-~-G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDK-E-GYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhh-h-ceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 35678899999999999999532 333333 2 7777765 99999999999999999999986 322211110000
Q ss_pred CC------CCChHhHHHHHHHHHHHHHHhCCC--cceEEEecCCcc
Q 022079 172 GS------WLSPQMQKEFVHLAKTCFENFGDR--VKYWATLNEPNL 209 (303)
Q Consensus 172 gg------w~~~~~~~~F~~ya~~v~~~fgd~--V~~w~t~NEP~~ 209 (303)
|+ ...+.+...|.+|++.+++.|+.. +.-|+.=|||.+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 11 224567888999999999999876 788999999876
No 45
>smart00642 Aamy Alpha-amylase domain.
Probab=90.39 E-value=0.77 Score=39.59 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCccc---------ccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRIL---------PKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~---------P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+....+-++.++++|++++-++--+.... |..- -.+|+ ...+-++++|++|+++||++++++-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~-~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY-KQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc-CCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 55567778899999999998876544442 1100 12222 2456789999999999999999873
No 46
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=90.37 E-value=0.94 Score=43.13 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
..+.|+.+||+||+|++|+= .|-|+. -.|+-++.+.++||-++++|.
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~-----------nHd~CM~~~~~aGIYvi~Dl~ 100 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK-----------NHDECMSAFADAGIYVILDLN 100 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS-------------HHHHHHHHHTT-EEEEES-
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC-----------CHHHHHHHHHhCCCEEEEecC
Confidence 57899999999999999972 233331 268888999999999999995
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=87.56 E-value=4 Score=38.81 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHcCCCcccccC---CcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSI---SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYG 172 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si---~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~g 172 (303)
..||.+=.+++++.|+|.+-+.= .-..+-| +.++.+.++-+.++.+||++.+++. |..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~---------~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTP---------EYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGST---------TTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCH---------HHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 46788888999999999876532 2222222 3478889999999999999999996 7888754 5
Q ss_pred C-----CCChHhHHHHHHHHHHHHHHhCC
Q 022079 173 S-----WLSPQMQKEFVHLAKTCFENFGD 196 (303)
Q Consensus 173 g-----w~~~~~~~~F~~ya~~v~~~fgd 196 (303)
| -.+++++..+.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5 45789999999999999988865
No 48
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=85.77 E-value=1.6 Score=42.26 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=59.0
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCC--CCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|++.+-+++ ..+-++-- .|... ..+-+.+.++.+++.|+. +.+++. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 35789999999999554444 44433311 03321 256778899999999997 446664 56663
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~ 212 (303)
++.+.|.+-.+.+.+.=-++|..+...-+|+....
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~ 197 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFY 197 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHH
Confidence 13445555566555433356666655557775433
No 49
>PLN02361 alpha-amylase
Probab=84.44 E-value=2 Score=42.46 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=47.0
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcccccCCC----CCCCh--hHHHHHHHHHHHHHHcCCeeEEee
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF----GKVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.+|....+-++.++++|++++=++=.....-+.|-. -.+|. -..+-++++|++|+++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478899999999999999999777654433333210 11222 134568999999999999999974
No 50
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=82.87 E-value=2.3 Score=38.62 Aligned_cols=59 Identities=25% Similarity=0.522 Sum_probs=41.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-------~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
..+-++.+|+||++++-++=-+.. |....| .+|+ -..+-++++|++|+++||++|+++-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFES--PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EES--SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceeccccccc--ccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 456688999999999988754441 101101 1222 3567799999999999999999964
No 51
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.47 E-value=3.8 Score=38.43 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred ccccccccCCCccCCCCCCCcCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHc
Q 022079 71 SNWDVFSHIPGNIENNDNGDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLR 150 (303)
Q Consensus 71 s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~ 150 (303)
+.|+-|....+. + .+..+.--+..+++=|+.++++|+..+=+.-.|+.-.+....+......-....++++..+++
T Consensus 10 ~~W~Ww~~~~~~---~-~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K 85 (273)
T PF10566_consen 10 AAWSWWSMHNGK---G-VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK 85 (273)
T ss_dssp EEECTCCCCTTS---S-BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHT
T ss_pred EEEeecccCCCC---C-CCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHc
Confidence 677766543221 1 112233457889999999999999999999999974332110111111124578999999999
Q ss_pred CCeeEEeecCCC------CchHHHH---hh---C------CC---CChHhHHHHHHHHHHHHHH
Q 022079 151 GIEPFVTIYHHD------FPQQLEE---KY---G------SW---LSPQMQKEFVHLAKTCFEN 193 (303)
Q Consensus 151 GI~pivtL~H~~------~P~wl~~---~~---g------gw---~~~~~~~~F~~ya~~v~~~ 193 (303)
|+.+++-.++-+ +=.-+.+ .| | || .+.+.++.+.+.++.++++
T Consensus 86 gVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 86 GVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp T-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999988754 1111111 11 1 23 3456788888888887765
No 52
>PLN00196 alpha-amylase; Provisional
Probab=82.43 E-value=2.1 Score=42.57 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHcCCCcccccCCcCcccccCCC----CCCCh---hHHHHHHHHHHHHHHcCCeeEEee
Q 022079 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF----GKVNP---AGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 95 ~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~----g~~n~---~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.|....+.++.+++||++++=++=......+.|-. -.+|. -.-+-++++|++++++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36667888999999999999888655443322210 11221 123568999999999999999984
No 53
>PRK12313 glycogen branching enzyme; Provisional
Probab=80.28 E-value=8.2 Score=40.25 Aligned_cols=93 Identities=16% Similarity=0.311 Sum_probs=58.9
Q ss_pred ccchHHH-HHHHHHcCCCcccccCC--------c-------CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee-
Q 022079 96 YHRFLED-IGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI- 158 (303)
Q Consensus 96 y~~~~eD-i~l~k~lG~~~~R~si~--------W-------~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL- 158 (303)
|.-..+. ++.+|+||+|++=+.=- | -.+.|. - | ..+-++++|++|+++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~-G-----t~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-Y-G-----TPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-C-C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445556 49999999999865432 2 122222 1 2 24568999999999999999994
Q ss_pred -cCCCCch----HHH--------H---h-hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 022079 159 -YHHDFPQ----QLE--------E---K-YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 159 -~H~~~P~----wl~--------~---~-~ggw-------~~~~~~~~F~~ya~~v~~~fg 195 (303)
.|..... ++. + . +.+| .++++.+.+.+-++.-+++|+
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4643211 110 0 0 0123 368888888888888888775
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.14 E-value=13 Score=39.46 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=58.5
Q ss_pred ccchHHH-HHHHHHcCCCcccccCCcC-------cccccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEee--cCCCC
Q 022079 96 YHRFLED-IGIMHSLGVNSYRFSISWP-------RILPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTI--YHHDF 163 (303)
Q Consensus 96 y~~~~eD-i~l~k~lG~~~~R~si~W~-------ri~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL--~H~~~ 163 (303)
|.-..+. ++.+|+||++++=+.=-.. .-.|..- -.++. ...+-++++|++|+++||++|+++ .|+..
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y-~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~ 342 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGY-YAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPK 342 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-CCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3334445 3888999999986543211 1111100 01111 134568999999999999999994 45532
Q ss_pred c-----------hHHHH-----hhCC-------CCChHhHHHHHHHHHHHHHHhC
Q 022079 164 P-----------QQLEE-----KYGS-------WLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 164 P-----------~wl~~-----~~gg-------w~~~~~~~~F~~ya~~v~~~fg 195 (303)
. .+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 343 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 343 DAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 11000 0112 3467888888888888888875
No 55
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=78.89 E-value=5.6 Score=37.81 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-cccccCC-c-Cccc-cc-CCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCC
Q 022079 100 LEDIGIMHSLGVN-SYRFSIS-W-PRIL-PK-GRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW 174 (303)
Q Consensus 100 ~eDi~l~k~lG~~-~~R~si~-W-~ri~-P~-~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw 174 (303)
++.+++|+++|++ .+-++++ - .++. .. ++ | .+ .+-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inK-g-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINK-G-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCC-C-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6889999999987 4666552 1 2222 11 11 2 23 56788999999999999877765 35552 1
Q ss_pred CChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccccCccCC
Q 022079 175 LSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYPP 222 (303)
Q Consensus 175 ~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~P 222 (303)
...++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223567778777777765 45778777666667664444566666644
No 56
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.48 E-value=6.7 Score=39.17 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=67.4
Q ss_pred hHHHHHHHHHcCCCcccccC-CcC-cccccCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~G-I~pivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|+|.+.+++ +-+ ++... - |... ..+-..+.|+.+++.| +.+.++|. +++|. +
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-l-gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-A-GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-h-CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C
Confidence 36789999999999888877 332 22222 1 4432 2456678899999999 67888886 57773 1
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccccCccC
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGTYP 221 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~ 221 (303)
+.+.|.+=.+.+.+-=-+.|..+...-||+......+..|..+
T Consensus 228 ---T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 ---TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2334444445444433467888888888886544444445443
No 57
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=77.59 E-value=5.5 Score=40.92 Aligned_cols=62 Identities=16% Similarity=0.360 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFG-------KVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g-------~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+.-..+.++.+++||++++=++=-+.. |....| .+|+ ...+-++++|++++++||++|+++-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 555678899999999999876543321 110001 1222 2356789999999999999999864
No 58
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=77.34 E-value=5.4 Score=37.33 Aligned_cols=66 Identities=11% Similarity=0.000 Sum_probs=50.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
-+.|++.+++.|++.+++.++=|...-....+.--.+.++.+.++++.+++.|+++.+++-+|+.|
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 457899999999999999985444333211133335778999999999999999999999887644
No 59
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.13 E-value=6.2 Score=40.38 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCccccc-CCC----CCCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPK-GRF----GKVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~-~~~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+.-..+-++.+++||++++=++=-...-.-. |-. -.+|+ ...+-++++|++|+++||++|+++-
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4456677899999999998765433211000 000 01222 2356789999999999999999854
No 60
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=76.07 E-value=5.8 Score=39.86 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=43.9
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcc--------cccCC--C------CCCChh--HHHHHHHHHHHHHHcCCeeE
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRI--------LPKGR--F------GKVNPA--GINFYNYLIDNLLLRGIEPF 155 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri--------~P~~~--~------g~~n~~--~~~~y~~~i~~l~~~GI~pi 155 (303)
+-|.-..+-++.+++||++++=++=...-. .|..- . |.+|+. ..+-++++|++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777899999999998776543321 11100 0 122321 35568999999999999999
Q ss_pred Eeec
Q 022079 156 VTIY 159 (303)
Q Consensus 156 vtL~ 159 (303)
+++-
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9853
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=75.76 E-value=7.4 Score=35.70 Aligned_cols=61 Identities=23% Similarity=0.163 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
-.+|++.+.+.|++.+|+.++-+.+.-....+.-.++.++.+.++++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 3789999999999999999987766332111322346788999999999999999887764
No 62
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=74.98 E-value=5.1 Score=42.33 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=39.3
Q ss_pred HHHHHHcCCCcccc----cCCcCcccccC-CC--------------CC--CCh---hHHHHHHHHHHHHHHcCCeeEEee
Q 022079 103 IGIMHSLGVNSYRF----SISWPRILPKG-RF--------------GK--VNP---AGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 103 i~l~k~lG~~~~R~----si~W~ri~P~~-~~--------------g~--~n~---~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
|+-+|+||++++.+ ++...+..++. .. |. .++ ..+.-+++||++|+++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999983 33343333221 00 11 122 257889999999999999999985
No 63
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.83 E-value=12 Score=35.15 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=70.9
Q ss_pred hHHHHHHHHHcCC--CcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHH-----
Q 022079 99 FLEDIGIMHSLGV--NSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLE----- 168 (303)
Q Consensus 99 ~~eDi~l~k~lG~--~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~----- 168 (303)
..+-++.+++.|+ +.+=+++.|..-. +. =.+|.+.+--..++++.+++.|+++++.+.=+ +.+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~-f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GD-FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--Cc-cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 5666788888885 5777777785421 11 24566556667899999999999998876532 1122111
Q ss_pred ----HhhC----------C------CCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCc
Q 022079 169 ----EKYG----------S------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (303)
Q Consensus 169 ----~~~g----------g------w~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~ 208 (303)
+..| | ++||+.++.|.+..+.+....|= --.|.=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 57899999999988888877652 33457899996
No 64
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=74.48 E-value=7.8 Score=36.41 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=46.6
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+-.+|++...+.|++.+|+.++=+...-..+.+.=.++.++...++|+.++++|+++..++.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 45889999999999999999865543222111333346788999999999999999887665
No 65
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=73.95 E-value=8.2 Score=34.90 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 160 (303)
+++++.+++.|++.+|++++-+...-.-..+.=.++.++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8999999999999999999876321110001111235788899999999999999999854
No 66
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=73.67 E-value=8.3 Score=37.37 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=47.6
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.-.+|++.+.+.|++.+++.++=|...-..+.+.=-.+.++.+.++|+.++++|+++.+++.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 36799999999999999998865554333111333457899999999999999999976664
No 67
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.61 E-value=8 Score=39.14 Aligned_cols=113 Identities=19% Similarity=0.397 Sum_probs=72.1
Q ss_pred ccchHHHHHHHHHcCCCccccc----CCcCcccccC-----------------------CC----CCCCh----hHHHHH
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFS----ISWPRILPKG-----------------------RF----GKVNP----AGINFY 140 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~s----i~W~ri~P~~-----------------------~~----g~~n~----~~~~~y 140 (303)
+.+|+..|+.|+=.|+|..=-. +-|.+|+-.- +. |...+ ..+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 5889999999999999954322 1244443321 00 22221 223445
Q ss_pred HHHHHHHHHcCCeeEEeecCCCCchHHHHhh--------CCCC---------------ChHhHHHHHHHHHHHHHHhCCC
Q 022079 141 NYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------GSWL---------------SPQMQKEFVHLAKTCFENFGDR 197 (303)
Q Consensus 141 ~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~--------ggw~---------------~~~~~~~F~~ya~~v~~~fgd~ 197 (303)
+++|+.+++-||+|++-.+---.|..+..-+ +-|. .|-+.+-=..|.+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 7899999999999999888767788776432 2222 2334555556777888999974
Q ss_pred cceE--EEecCCc
Q 022079 198 VKYW--ATLNEPN 208 (303)
Q Consensus 198 V~~w--~t~NEP~ 208 (303)
-..+ -||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 3333 4899853
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=73.52 E-value=25 Score=39.68 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHcCCCcccccC--------CcCcccccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeec--CCCCchHHHHh
Q 022079 103 IGIMHSLGVNSYRFSI--------SWPRILPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIY--HHDFPQQLEEK 170 (303)
Q Consensus 103 i~l~k~lG~~~~R~si--------~W~ri~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~--H~~~P~wl~~~ 170 (303)
++.+|+||+|++=+.= +|- -.|.+- -.++. ...+=++++|++|+++||.+|+++- |+..=.|....
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y-~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~ 849 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSY-FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQ 849 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCcccc-CCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhh
Confidence 6899999999985432 341 222211 11111 1345589999999999999999854 55211121111
Q ss_pred h----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 022079 171 Y----------------GS-------WLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 171 ~----------------gg-------w~~~~~~~~F~~ya~~v~~~fg 195 (303)
+ .. +.++++.+.+.+=+..-+++|+
T Consensus 850 fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 850 FDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 11 3457788888888888888874
No 69
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=73.00 E-value=8 Score=39.51 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCccc-ccCCC----CCCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRIL-PKGRF----GKVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~-P~~~~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+.-..+-++.+++||++++=++=-.+.-. ..|-. -.+|+ ...+-++++|++++++||++|+++-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34456668999999999886653221100 00000 02232 2356789999999999999999853
No 70
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=72.68 E-value=6.9 Score=38.41 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=63.2
Q ss_pred hHHHHHHHHHcCCCcccccC-Cc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|+|.+-+++ +- .++...- |... ..+-..+.++.+++.|++ +.++|. +++|. +
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 35789999999999666666 22 2222221 3322 244567889999999998 667776 57773 1
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccccCc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGT 219 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~~g~ 219 (303)
+.+.+.+=++.+.+-=-++|..+...-||.......+..|.
T Consensus 180 ---t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 180 ---TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred ---CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCC
Confidence 23344444444443334567777777788765444444444
No 71
>PLN02784 alpha-amylase
Probab=72.57 E-value=7.7 Score=41.91 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=47.1
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcccccCCC----CCCCh--hHHHHHHHHHHHHHHcCCeeEEee
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF----GKVNP--AGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.+|....+.++.++++|++++=++=.-....+.|-. -.+|. -..+-++.+|+.|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 468889999999999999999776654443333320 11222 134568999999999999999984
No 72
>PRK03705 glycogen debranching enzyme; Provisional
Probab=72.13 E-value=7.6 Score=40.85 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHcCCCcccccCC------------------------cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 103 IGIMHSLGVNSYRFSIS------------------------WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~------------------------W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
++.+|+||++++-+.=- +-.+.|.- |.-....++-++++|++|+++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y--gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY--ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc--CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999998865321 12222221 22111235679999999999999999985
Q ss_pred c
Q 022079 159 Y 159 (303)
Q Consensus 159 ~ 159 (303)
-
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 3
No 73
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=72.02 E-value=1.8 Score=33.13 Aligned_cols=19 Identities=42% Similarity=0.775 Sum_probs=13.7
Q ss_pred HHHHhCC--CcceEEEecC-Cc
Q 022079 190 CFENFGD--RVKYWATLNE-PN 208 (303)
Q Consensus 190 v~~~fgd--~V~~w~t~NE-P~ 208 (303)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3567776 6999999999 76
No 74
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=71.30 E-value=13 Score=30.91 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCcccccCC--cC-cccccCCCCC--CChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 101 EDIGIMHSLGVNSYRFSIS--WP-RILPKGRFGK--VNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~--W~-ri~P~~~~g~--~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+=++.+|++|+|++-+... +- --.|+.. |. +..+ -+.+.++|+.|+++||++++=+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~-~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKV-GPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCC-CcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3468899999999998443 11 1133322 32 2223 57899999999999999998764
No 75
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=70.49 E-value=33 Score=35.74 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=58.8
Q ss_pred chHHHH-HHHHHcCCCcccc-cCCcCc------ccccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeec--CCCC--
Q 022079 98 RFLEDI-GIMHSLGVNSYRF-SISWPR------ILPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIY--HHDF-- 163 (303)
Q Consensus 98 ~~~eDi-~l~k~lG~~~~R~-si~W~r------i~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~--H~~~-- 163 (303)
-..+.+ +.+|+||+|++=+ .|.... -.|..- -.++. ...+-++++|++|+++||++|+++- |...
T Consensus 157 ~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y-~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 157 ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY-YAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC-cccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 344554 8899999999987 332221 011100 01111 1244689999999999999999954 5421
Q ss_pred ---------chHHHH--h---hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 022079 164 ---------PQQLEE--K---YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 164 ---------P~wl~~--~---~ggw-------~~~~~~~~F~~ya~~v~~~fg 195 (303)
|.+... . +..| .++++.+.+.+-++..+++|+
T Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 236 HGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred chhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 0 0112 468888999999999988875
No 76
>PRK10785 maltodextrin glucosidase; Provisional
Probab=70.17 E-value=9.4 Score=39.59 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCC--C----CCCCh--hHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGR--F----GKVNP--AGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.-..+-++.+++||++++=++=-... |..- . -.+|+ -..+-++++|++|+++||++|+++-
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34567789999999999877642211 1100 0 01222 1346689999999999999999864
No 77
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=70.06 E-value=11 Score=36.55 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCC--CCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|+|.+.+++ .-+-++-- .|... ..+-..+.++.+++.|+. +.++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36789999999999655555 33322210 03322 245577889999999997 567765 56663
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
++.+.|.+-.+.+.+-=-++|..+...-||...
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245566666666665434678888888888754
No 78
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=69.41 E-value=25 Score=33.00 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred hHHHHHHHHHcC--CCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHHHh---
Q 022079 99 FLEDIGIMHSLG--VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK--- 170 (303)
Q Consensus 99 ~~eDi~l~k~lG--~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~--- 170 (303)
..+-++.+++.| ++++=+++.|.+-.-.+. =.+|++.+--.+++|+.+++.|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~-f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCD-FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCccee-eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 567788899999 556777788874322111 23555555557899999999999988877532 223221110
Q ss_pred ----------h--------CC---CCChHhHHHHHHHHHHHHHHhCCCcceE-EEecCCc
Q 022079 171 ----------Y--------GS---WLSPQMQKEFVHLAKTCFENFGDRVKYW-ATLNEPN 208 (303)
Q Consensus 171 ----------~--------gg---w~~~~~~~~F~~ya~~v~~~fgd~V~~w-~t~NEP~ 208 (303)
+ ++ +.||+..+.|.+..+.+.+ .| |++| .=+|||.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5688888888777776544 33 5544 5588873
No 79
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=67.97 E-value=13 Score=35.86 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=58.0
Q ss_pred hHHHHHHHHHcCCCcccccC-CcC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|++.+.+++ +-+ ++...- |... ..+...+.++.+++.|+. +.++|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG---------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC----------
Confidence 45889999999999666666 222 222221 3221 255678899999999998 667764 46663
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~ 212 (303)
++.+.|.+=.+.+.+.=-+.|..+...-||+....
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 13444555445444322355666655556765443
No 80
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.97 E-value=50 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 123 ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 123 i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
..|... |-++++.+..++++++.++++|-+.++-|.|.
T Consensus 63 ~~~~~~-~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 63 GYPGQL-GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CCCCCc-CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 344433 77888999999999999999999999999995
No 81
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=67.72 E-value=38 Score=32.80 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh
Q 022079 92 ADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY 171 (303)
Q Consensus 92 a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ 171 (303)
|.=||+ |+-- ....+.|+..+|+. | |.+-.+ +....+++.++++|+..=+..+|-.+..-+.++|
T Consensus 79 aDiHf~-~rla-~~~~~~g~~k~RIN-------P----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 79 ADIHFD-YRLA-LEAAECGVDKVRIN-------P----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEeecc-HHHH-HHhhhcCcceEEEC-------C----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 333555 4432 23446778888763 2 655433 3789999999999999999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHH
Q 022079 172 GSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 172 ggw~~~~~~~~F~~ya~~v 190 (303)
++-+.+..++--..+++.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8776666666666666654
No 82
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=67.55 E-value=16 Score=35.73 Aligned_cols=107 Identities=16% Similarity=0.011 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC--CchHHHHh------h
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD--FPQQLEEK------Y 171 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~~------~ 171 (303)
++|++.+.+.|++.+|+.++-+.+.-.-..+.--++.++...+.++.+++.|+++.++.-..+ .|..+.+- .
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 789999999999999999976665332111333356789999999999999999998864321 13332211 1
Q ss_pred ----------CCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 172 ----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 172 ----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
.|-.. +..+.++.+.+.+++ +..-.+..-|-..+.
T Consensus 158 Ga~~I~l~DT~G~~~---P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA 202 (378)
T PRK11858 158 GADRVRFCDTVGILD---PFTMYELVKELVEAV-DIPIEVHCHNDFGMA 202 (378)
T ss_pred CCCEEEEeccCCCCC---HHHHHHHHHHHHHhc-CCeEEEEecCCcCHH
Confidence 23333 456667777777777 433345666766653
No 83
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=67.46 E-value=26 Score=33.06 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHcCCCcccccCC--cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 104 GIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 104 ~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
+.+++.|++++-+++- -....|.-. |.............|..|+++|++++|.+=-+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~-g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~ 77 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG-GSYPLDQGGWIKSDIAALRAAGGDVIVSFGGA 77 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC-CCCCcccchhHHHHHHHHHHcCCeEEEEecCC
Confidence 5677889998876652 223333311 21111112345778999999999999998443
No 84
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=67.19 E-value=17 Score=33.47 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCC--------------CCchHH--H--------------HhhCC----CCChH---h
Q 022079 137 INFYNYLIDNLLLRGIEPFVTIYHH--------------DFPQQL--E--------------EKYGS----WLSPQ---M 179 (303)
Q Consensus 137 ~~~y~~~i~~l~~~GI~pivtL~H~--------------~~P~wl--~--------------~~~gg----w~~~~---~ 179 (303)
.+.++.+++.-++.|.++|+||.=- ..|.|- . .+.+| -.+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 4689999999999999999998521 112211 0 00011 11333 1
Q ss_pred HHHHHHHHHHHHHHhCCC-----cceEEEecCCccccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022079 180 QKEFVHLAKTCFENFGDR-----VKYWATLNEPNLLTDMAYIRGTYPPTHCSAPFGNCSAGNSDTEPLIVLHNMLLSHAK 254 (303)
Q Consensus 180 ~~~F~~ya~~v~~~fgd~-----V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~hnlllAHa~ 254 (303)
...-.+++..+..+||.. |++|.+=|||.+... ==.-++|. ...+.-+....++.|+
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~--TH~dVHP~----------------~~t~~El~~r~i~~Ak 164 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHS--THRDVHPE----------------PVTYDELRDRSIEYAK 164 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHH--HTTTT--S-------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcc--cccccCCC----------------CCCHHHHHHHHHHHHH
Confidence 122334466777888775 999999999987532 00112332 1234446677777777
Q ss_pred HHHHHHHhhccCCCCc-EEEEe
Q 022079 255 AVKLYRKHFQEKQGGS-MGIVL 275 (303)
Q Consensus 255 a~~~~r~~~~~~~~~~-IGi~~ 275 (303)
|+|..- |.++ +|-+.
T Consensus 165 aiK~~D------P~a~v~GP~~ 180 (239)
T PF12891_consen 165 AIKAAD------PDAKVFGPVE 180 (239)
T ss_dssp HHHHH-------TTSEEEEEEE
T ss_pred HHHhhC------CCCeEeechh
Confidence 776643 5664 56664
No 85
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=67.11 E-value=17 Score=36.77 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=43.8
Q ss_pred cccchHHH-----HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch
Q 022079 95 HYHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (303)
Q Consensus 95 ~y~~~~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~ 165 (303)
.|..|.+| ++++++.|++.+|+.-.. | .++-....|+.+++.|..+.+++.+=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------n--d~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL------------N--DPRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC------------C--CHHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 47888889 899999999999986432 2 145667788888888888888887755563
No 86
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=66.86 E-value=15 Score=35.68 Aligned_cols=109 Identities=17% Similarity=-0.004 Sum_probs=71.1
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC--CchHHHH------
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD--FPQQLEE------ 169 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~------ 169 (303)
-.++|++.+.+.|++.+|+.++-|.+.-....+.-..+.++...+.++.+++.|+++.+++-... .|..+.+
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 35899999999999999998877665432111322345788899999999999999998875431 1333321
Q ss_pred hh----------CCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 170 KY----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 170 ~~----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+. -|-. +++.+.++.+.+.++++ ..-.+..-|-..+.
T Consensus 152 ~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA 198 (363)
T TIGR02090 152 EAGADRINIADTVGVL---TPQKMEELIKKLKENVK-LPISVHCHNDFGLA 198 (363)
T ss_pred hCCCCEEEEeCCCCcc---CHHHHHHHHHHHhcccC-ceEEEEecCCCChH
Confidence 11 1222 35567777777777775 22235677776653
No 87
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=66.70 E-value=15 Score=35.65 Aligned_cols=108 Identities=16% Similarity=0.008 Sum_probs=70.3
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC--CchHHHH------h
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD--FPQQLEE------K 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~------~ 170 (303)
-.+|++.+.+.|++.+|+.++-|.+.-....+.=..+.++.+.+.|+.+++.|+++.+++-..+ .|..+.+ +
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAE 153 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987654332111222346788899999999999999888876432 1333221 1
Q ss_pred h----------CCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 171 Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 171 ~----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
. -|-. ++..+.++.+.+.++++- .-.+.+-|-..+.
T Consensus 154 ~Ga~~i~l~DT~G~~---~P~~v~~lv~~l~~~~~v-~l~~H~HNd~GlA 199 (365)
T TIGR02660 154 AGADRFRFADTVGIL---DPFSTYELVRALRQAVDL-PLEMHAHNDLGMA 199 (365)
T ss_pred cCcCEEEEcccCCCC---CHHHHHHHHHHHHHhcCC-eEEEEecCCCChH
Confidence 1 1222 355677777777777742 2345677766653
No 88
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=65.70 E-value=8.6 Score=35.64 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=46.0
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
=.+|++.+.+.|++.+|+.++=|...-....+.=-++.++...++++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4679999999999999998864443222110222246689999999999999999999985
No 89
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=65.65 E-value=11 Score=42.62 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=39.7
Q ss_pred ccchH--HHHHHHHHcCCCcccccCCcCccc-----ccC------CC----CCCCh--h--HHHHHHHHHHHHHHcCCee
Q 022079 96 YHRFL--EDIGIMHSLGVNSYRFSISWPRIL-----PKG------RF----GKVNP--A--GINFYNYLIDNLLLRGIEP 154 (303)
Q Consensus 96 y~~~~--eDi~l~k~lG~~~~R~si~W~ri~-----P~~------~~----g~~n~--~--~~~~y~~~i~~l~~~GI~p 154 (303)
|.... +.|+.+|+||++++=+.=-..... +.+ -. -.+|. . ..+-++++|++|+++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 668899999999986543221110 000 00 01121 1 4567999999999999999
Q ss_pred EEee
Q 022079 155 FVTI 158 (303)
Q Consensus 155 ivtL 158 (303)
|++.
T Consensus 264 ILDv 267 (1221)
T PRK14510 264 ILDV 267 (1221)
T ss_pred EEEE
Confidence 9984
No 90
>PRK09505 malS alpha-amylase; Reviewed
Probab=65.18 E-value=15 Score=38.81 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCCcccccCCcCccc-----------c----cCC----CCCCCh--hHHHHHHHHHHHHHHcCCeeEEe
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRIL-----------P----KGR----FGKVNP--AGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~-----------P----~~~----~g~~n~--~~~~~y~~~i~~l~~~GI~pivt 157 (303)
..+-++.+++||++++=++=-...+. | .|- --.+|+ ...+-++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 56668999999999998775444331 1 000 012232 24567999999999999999998
Q ss_pred ec
Q 022079 158 IY 159 (303)
Q Consensus 158 L~ 159 (303)
+-
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 91
>PRK09936 hypothetical protein; Provisional
Probab=64.04 E-value=50 Score=31.30 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=62.1
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCCh
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSP 177 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 177 (303)
.|++=++.++.+|++++ =+.|++.--+.- |.-+ .+..+.++.+.+.||+++|.|+ +| |.|.+..- .++
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~f-g~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~~~---~d~ 106 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDADF-GGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMHQK---QDG 106 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCCc-ccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHHHh---cCc
Confidence 36777888999999975 457888822111 3232 4789999999999999999996 56 76655321 122
Q ss_pred HhHH-HHHH-------HHHHHHHHhCCCcceEEEecCCc
Q 022079 178 QMQK-EFVH-------LAKTCFENFGDRVKYWATLNEPN 208 (303)
Q Consensus 178 ~~~~-~F~~-------ya~~v~~~fgd~V~~w~t~NEP~ 208 (303)
...+ .+.. .++...++.+-.|+.|-+==|+.
T Consensus 107 ~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 107 AALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 1111 2222 34445556666777775444444
No 92
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=63.37 E-value=33 Score=33.71 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=40.4
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.|++||++++++||+.|=+.|- . . .... .+....+.+.+.+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~-~-d~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------S-S-DSWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------c-C-Cccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 4999999999999999999886 1 1 2233 4667889999999999988876
No 93
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=62.62 E-value=24 Score=32.82 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC-CCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH-HDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H-~~~P 164 (303)
-.+|++.+.+.|++.+++.++=+...-.-..+.-..+.++...+.++.++++|+++.+++.. |+.|
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~ 141 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP 141 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC
Confidence 46899999999999999998655432221113223567899999999999999999887762 4444
No 94
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=62.44 E-value=24 Score=34.07 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
++.++++|.+.+-+-+-|. |+.. ..+|.+.++...++.++|++.||..++=+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~-~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED-DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc-hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999886 4422 34577889999999999999999888854
No 95
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.43 E-value=19 Score=33.19 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCcccccCCcC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
-+|.++.||++|++.+-++++-+ .+.+.-. +. ..++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~-~~---~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNII-ST---HTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhcc-CC---CCHHHHHHHHHHHHHcCCEEEEeE
Confidence 47899999999999999998821 1222211 22 236778899999999999866553
No 96
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=62.04 E-value=23 Score=35.78 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=60.9
Q ss_pred cccchHHH-----HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchH---
Q 022079 95 HYHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ--- 166 (303)
Q Consensus 95 ~y~~~~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~w--- 166 (303)
.|..|.+| ++.+.+.|++.+|+..+-+. ++-..+.++.+++.|+.+..++.+-..|..
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e 153 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLE 153 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHH
Confidence 46667888 89999999999999875543 234567778888888888877765333521
Q ss_pred -HHH------hh----------CCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 167 -LEE------KY----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 167 -l~~------~~----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
+.+ +. .|-..| ....+.++.+.++++ ..-...+-|-..+
T Consensus 154 ~~~~~a~~l~~~Gad~I~i~Dt~G~l~P---~~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 154 YYLEFARELVDMGVDSICIKDMAGLLTP---KRAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCcCH---HHHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 111 00 344444 355666666667775 2234456665554
No 97
>PRK05474 xylose isomerase; Provisional
Probab=61.41 E-value=1.8e+02 Score=29.13 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=46.3
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHH----HHHHHcCCee-EEeecCCCCchHHHHhhC
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLI----DNLLLRGIEP-FVTIYHHDFPQQLEEKYG 172 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i----~~l~~~GI~p-ivtL~H~~~P~wl~~~~g 172 (303)
+.+.-++.+.+||+..|-|- =..|.|++. .. .+.-+.+++++ +.+.+.||+. ++|..-|..|.... |
T Consensus 80 k~d~afe~~~kLg~~~~~FH--D~D~~peg~--s~-~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---G 151 (437)
T PRK05474 80 KADAAFEFFTKLGVPYYCFH--DVDVAPEGA--SL-KEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---G 151 (437)
T ss_pred HHHHHHHHHHHhCCCeeccC--ccccCCCCC--CH-HHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---C
Confidence 34455778999999887553 345777752 22 22223334444 4456789985 55666788897653 8
Q ss_pred CCCChH
Q 022079 173 SWLSPQ 178 (303)
Q Consensus 173 gw~~~~ 178 (303)
+++||+
T Consensus 152 A~Tnpd 157 (437)
T PRK05474 152 AATNPD 157 (437)
T ss_pred cCCCCC
Confidence 899875
No 98
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=61.20 E-value=33 Score=32.92 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=62.0
Q ss_pred HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHH
Q 022079 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKE 182 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~ 182 (303)
.+.+|++|.+.+.|=+=|. |+++ .++|....++.+++.++|++.+|--++=+..++.+. .+. .+.++...
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~-~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~--~d~----~~~~yak~ 180 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP-DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI--ADN----GSVEYAKV 180 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc--ccc----ccHHHHhh
Confidence 5789999999999988886 5543 558888899999999999999999888876655432 111 12222222
Q ss_pred HHHHHHHHHHHhCC---CcceEE
Q 022079 183 FVHLAKTCFENFGD---RVKYWA 202 (303)
Q Consensus 183 F~~ya~~v~~~fgd---~V~~w~ 202 (303)
--+.+-..++.|++ .|+.|=
T Consensus 181 kP~~V~~a~kefs~~~~gvDVlK 203 (324)
T PRK12399 181 KPHKVNEAMKVFSKPRFGVDVLK 203 (324)
T ss_pred ChHHHHHHHHHhccCCCCCcEEE
Confidence 23334445677765 477773
No 99
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=60.88 E-value=34 Score=32.90 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=63.4
Q ss_pred HHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHH
Q 022079 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQK 181 (303)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~ 181 (303)
+.+.+|++|.+.+.|=+=|. |+++ -++|....++.+++.++|++.+|--++=+..++.+. .+ =.+++...
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~-~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d----~~~~eyak 181 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGD-EEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SD----NNSAAYAK 181 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC-HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--cc----cccHHHHh
Confidence 56889999999999988886 5533 458888899999999999999999999887665432 11 12233322
Q ss_pred HHHHHHHHHHHHhCC---CcceEE
Q 022079 182 EFVHLAKTCFENFGD---RVKYWA 202 (303)
Q Consensus 182 ~F~~ya~~v~~~fgd---~V~~w~ 202 (303)
.--+.+-..++.|++ .|+.|=
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVlK 205 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVLK 205 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEEE
Confidence 223334455677775 477773
No 100
>PRK12568 glycogen branching enzyme; Provisional
Probab=60.86 E-value=21 Score=38.06 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=57.2
Q ss_pred ccchHHH-HHHHHHcCCCccccc--------CCcCcccccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeec--CCC
Q 022079 96 YHRFLED-IGIMHSLGVNSYRFS--------ISWPRILPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIY--HHD 162 (303)
Q Consensus 96 y~~~~eD-i~l~k~lG~~~~R~s--------i~W~ri~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~--H~~ 162 (303)
|.-..+. ++.+|+||++++-+. -+|- -.|.+. -.++. ...+-++++|++|+++||++|+++- |+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~-~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGL-YAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcC-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 4444444 689999999988543 2341 111110 01111 1245689999999999999999954 442
Q ss_pred Cc-----------hHHH-H-h---hCC-------CCChHhHHHHHHHHHHHHHHhC
Q 022079 163 FP-----------QQLE-E-K---YGS-------WLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 163 ~P-----------~wl~-~-~---~gg-------w~~~~~~~~F~~ya~~v~~~fg 195 (303)
.- .+-. + + +.. +.++++.+.+.+=++.-+++|+
T Consensus 346 ~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 346 DDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 11 0100 0 0 012 3357777778877777777774
No 101
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.79 E-value=50 Score=31.31 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHHHh---h-----------------CC---CCChHhHHHHHH
Q 022079 132 VNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK---Y-----------------GS---WLSPQMQKEFVH 185 (303)
Q Consensus 132 ~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~---~-----------------gg---w~~~~~~~~F~~ 185 (303)
+|.+.+---+++|+.|+++|+++++.++-+ +.+.+-+.+ | .+ ++||+..+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 444444456789999999999998876422 222221110 0 11 567888777766
Q ss_pred HHHHHHHHhCCCcceEEEecCCccc
Q 022079 186 LAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 186 ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
..+......| ---.|.=+|||...
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~ 163 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYS 163 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCcc
Confidence 5554433333 23456899999865
No 102
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=60.65 E-value=34 Score=33.09 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=57.2
Q ss_pred hHHHHHHHHHcCCCcccccCC--cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCee-EEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP-FVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p-ivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|++.+-++++ -+++...- +... ..+...+.++.+++.|+.. .+++. +++|. +
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~--~~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTH--NEEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999997777772 23343331 3321 2567789999999999974 35443 56663 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~ 212 (303)
+ .+.|.+=.+.+.+.=-+.|..+...-+|.....
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 2 334444444443322234555544457765433
No 103
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=60.61 E-value=19 Score=34.70 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCcccccCC-cC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCee-EEeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS-WP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP-FVTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p-ivtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|++.+.++++ -+ ++... - |... ..+-+.+.|+.+++.|+.+ .++|. +++|. +
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-l-gR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-L-GRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL---------Q 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-h-CCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C
Confidence 368899999999986666662 32 33333 1 4321 2567889999999999975 45554 56663 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~ 208 (303)
+.+.+.+-.+.+.+.=-+.+..+...=||+
T Consensus 165 ---t~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 165 ---TLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred ---CHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 234454445544432223455444444554
No 104
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=60.20 E-value=26 Score=36.49 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=57.9
Q ss_pred ccchHHH-----HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc----hH
Q 022079 96 YHRFLED-----IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP----QQ 166 (303)
Q Consensus 96 y~~~~eD-----i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P----~w 166 (303)
|.+|.+| ++..++.|++.+|+....+. ++.....|+.+++.|....+++.+-+.| ..
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 6666666 99999999999999864432 2345666777777777665555432234 22
Q ss_pred HHHh----------------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 167 LEEK----------------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 167 l~~~----------------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+.+. -.|-..| ....+.++.+.++++ ..-...+-|-..+.
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKP---YAAYELVSRIKKRVD-VPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhcC-CeEEEEECCCCchH
Confidence 2110 0334444 455666666767773 33345677776653
No 105
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=60.04 E-value=20 Score=38.02 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=36.5
Q ss_pred HHHHHHcCCCcccccCCcCc----------------ccccCCCCCCChh-----HHHHHHHHHHHHHHcCCeeEEeec
Q 022079 103 IGIMHSLGVNSYRFSISWPR----------------ILPKGRFGKVNPA-----GINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~W~r----------------i~P~~~~g~~n~~-----~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
|+.+|+||++++=+.=--.- --|..- -.+|.. ..+-++++|++|+++||++|+++-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y-~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF-FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc-cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 78999999999865432111 111100 112211 256799999999999999999954
No 106
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=59.95 E-value=19 Score=36.87 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHcCCCcccccCC--------c-------CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~--------W-------~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+.-..+-++.+|+||++++-+.=- | -.+.|. - | ..+-++++|++|+++||++|+++-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~-G-----~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-Y-G-----GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-c-C-----CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 444566789999999999865421 2 111111 0 2 345689999999999999999853
No 107
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.44 E-value=33 Score=31.76 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 160 (303)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987332 2677889999999999999999865
No 108
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=59.38 E-value=45 Score=30.92 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
-++|++...+.|++.+|+++.-+. ++...+.++.+++.|+++.+.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 578999999999999999774432 4567888899999999888766
No 109
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.98 E-value=45 Score=32.32 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhH
Q 022079 101 EDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQ 180 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~ 180 (303)
.=|++|.+.|++-+=.|+- .|++ -+...++.++++++.+.+.|++++|+. .|.-+.. -||. .+.+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~----~~~~----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLL----IPEE----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeecc----cCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hHHH
Confidence 3367888899876655542 3332 223579999999999999999999998 4776654 3443 2334
Q ss_pred HHHHHH
Q 022079 181 KEFVHL 186 (303)
Q Consensus 181 ~~F~~y 186 (303)
+.|.+.
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 444444
No 110
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=57.37 E-value=64 Score=31.24 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=62.2
Q ss_pred cCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHh
Q 022079 91 VADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEK 170 (303)
Q Consensus 91 ~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~ 170 (303)
+|.=||+ |+..+. ..+.|++.+|+. + |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.++
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN----------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN----------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC----------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 4444654 444433 346799999873 2 66543 3678999999999999999999999999999999
Q ss_pred hCCCCChHhHHHHHHHHHHH
Q 022079 171 YGSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 171 ~ggw~~~~~~~~F~~ya~~v 190 (303)
||+-+.+..++.-.++++.+
T Consensus 141 yg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 87655555666666666654
No 111
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=57.15 E-value=43 Score=32.18 Aligned_cols=93 Identities=22% Similarity=0.184 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCcccccC-CcC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchHHHHhhCCCCC
Q 022079 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~ 176 (303)
++.++.++++|+|.+-+++ +-+ ++... - |... ..+-+.+.++.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-l-gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-L-GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-c-CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999777776 343 33332 1 4422 25667889999999999754 7775 56773
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
++.+.|.+-.+.+.+-=-++|..+..-=||+.
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 23444555555544322344555544445543
No 112
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.07 E-value=67 Score=30.40 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=63.4
Q ss_pred hHHHHHHHHHcCC--CcccccCCcCcccccC--C-CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHHHh
Q 022079 99 FLEDIGIMHSLGV--NSYRFSISWPRILPKG--R-FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~--~~~R~si~W~ri~P~~--~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~ 170 (303)
..+-++.+++.|+ +++=+++.|....... . .-.+|.+.+---+++|+.|++.|+++++.++-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 3444555666554 3555566664432210 0 012344444445789999999999999988644 334321110
Q ss_pred ---h-------------------C---CCCChHhHHHHHHHHHHHHHHhCCCcc-eEEEecCCccc
Q 022079 171 ---Y-------------------G---SWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNLL 210 (303)
Q Consensus 171 ---~-------------------g---gw~~~~~~~~F~~ya~~v~~~fgd~V~-~w~t~NEP~~~ 210 (303)
| + .++||+..+.|.+..+.+ +..-|+ .|.=+|||...
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 1 256899888888777665 223354 46889999654
No 113
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.80 E-value=67 Score=30.80 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCeeEEeecCCCCc--------hHHHH--h-----------h--------C---CCCChHhHHHHHHHHH
Q 022079 141 NYLIDNLLLRGIEPFVTIYHHDFP--------QQLEE--K-----------Y--------G---SWLSPQMQKEFVHLAK 188 (303)
Q Consensus 141 ~~~i~~l~~~GI~pivtL~H~~~P--------~wl~~--~-----------~--------g---gw~~~~~~~~F~~ya~ 188 (303)
+++|+.|++.|+++++.+.-+-.+ .+-+. + | + .++||+.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999999887544222 22111 0 0 1 2668888888877777
Q ss_pred HHHHHhCCCcceEEEecCCcc
Q 022079 189 TCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 189 ~v~~~fgd~V~~w~t~NEP~~ 209 (303)
.+...+|- .-+|.=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 66655432 345688999964
No 114
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=56.63 E-value=47 Score=31.91 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeeEEeecCC-CC-chHHH-HhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccc
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHH-DF-PQQLE-EKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~-~~-P~wl~-~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~ 212 (303)
-++++++|++.|++.++.+.-+ .. ..|-. ..+-.|.||+..+.|.+..+.+.+ .| -.-.|.=+|||.++..
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 4689999999999988866411 00 00000 001236788888877666554432 23 2347899999997654
No 115
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=56.26 E-value=28 Score=32.78 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccc
Q 022079 137 INFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYI 216 (303)
Q Consensus 137 ~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~ 216 (303)
++-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|......-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 56678999999999999888765 46662 234556666666554434668888888888876655566
Q ss_pred cCccCC
Q 022079 217 RGTYPP 222 (303)
Q Consensus 217 ~g~~~P 222 (303)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 665543
No 116
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=56.15 E-value=30 Score=32.59 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=45.9
Q ss_pred chHHHHHHHHHcCCCcccccCC----cCc---ccccC-----------CCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 98 RFLEDIGIMHSLGVNSYRFSIS----WPR---ILPKG-----------RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~----W~r---i~P~~-----------~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
..++-|+.|+..++|.+.+-++ |+- ..|+- ..|.+.+ +-++++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 4788899999999999887775 521 12220 0034554 446999999999999999876
Q ss_pred CCCCchHH
Q 022079 160 HHDFPQQL 167 (303)
Q Consensus 160 H~~~P~wl 167 (303)
|+|...
T Consensus 93 --D~PGH~ 98 (303)
T cd02742 93 --DMPGHS 98 (303)
T ss_pred --cchHHH
Confidence 677553
No 117
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=56.14 E-value=2.2e+02 Score=28.48 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHH----HHHHHcCCee-EEeecCCCCchHHHHhhCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLI----DNLLLRGIEP-FVTIYHHDFPQQLEEKYGS 173 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i----~~l~~~GI~p-ivtL~H~~~P~wl~~~~gg 173 (303)
-+.-++.+.+||+..|-|- =..|.|++. ... +..+-.++++ +.+.+.||++ ++|..-|..|.+.. |+
T Consensus 80 ~daaFef~~kLg~~~~~FH--D~D~~peg~--~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA 151 (434)
T TIGR02630 80 VDAAFEFFEKLGVPYYCFH--DRDIAPEGA--SLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GA 151 (434)
T ss_pred HHHHHHHHHHhCCCeeccC--ccccCCCCC--CHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---Cc
Confidence 3445677999999886553 456778752 222 2222334443 4456889985 45666788897653 88
Q ss_pred CCChH
Q 022079 174 WLSPQ 178 (303)
Q Consensus 174 w~~~~ 178 (303)
.+||+
T Consensus 152 ~TnPd 156 (434)
T TIGR02630 152 ATSPD 156 (434)
T ss_pred CCCCC
Confidence 99875
No 118
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=55.79 E-value=41 Score=30.68 Aligned_cols=77 Identities=16% Similarity=0.321 Sum_probs=52.0
Q ss_pred CccccchHHHHHHHHHcCCCcccc----------------------cCCcCcccccCCCCCCChhHHHHHHHHHHHHHHc
Q 022079 93 DDHYHRFLEDIGIMHSLGVNSYRF----------------------SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLR 150 (303)
Q Consensus 93 ~d~y~~~~eDi~l~k~lG~~~~R~----------------------si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~ 150 (303)
.+---.-+.-+++++++|.+++.| ++ | +||. |.+| ++.+.++++.+++.
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT---GGId---l~Nf~~I~~i~lda 201 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT---GGID---LDNFEEIVQIALDA 201 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC---CCcc---HHhHHHHHHHHHHc
Confidence 333456778899999999998874 33 3 5776 6677 78889999999999
Q ss_pred CCeeEEeecC-CCCchHHHHhhCCCCChHhHHHH
Q 022079 151 GIEPFVTIYH-HDFPQQLEEKYGSWLSPQMQKEF 183 (303)
Q Consensus 151 GI~pivtL~H-~~~P~wl~~~~ggw~~~~~~~~F 183 (303)
|++-++ .| |+ -.-++-.|-+.++.+...
T Consensus 202 Gv~kvi--PHIYs---siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 202 GVEKVI--PHVYS---SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred CCCeec--cccce---eccccccCCCCHHHHHHH
Confidence 998765 23 21 112232566666654443
No 119
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=55.73 E-value=60 Score=31.01 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCeeEEeecCCC-----CchHHHHh-------------h-----------CCCCChHhHHHHHHHHHHH
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHHD-----FPQQLEEK-------------Y-----------GSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~~-----~P~wl~~~-------------~-----------ggw~~~~~~~~F~~ya~~v 190 (303)
-+++|+.|++.|+++++.++-+- .|..-+.+ | -.+.||+.++.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 47799999999999988876442 22221111 0 0267899999998888877
Q ss_pred HHHhC-CCcceEEEecCCcccc
Q 022079 191 FENFG-DRVKYWATLNEPNLLT 211 (303)
Q Consensus 191 ~~~fg-d~V~~w~t~NEP~~~~ 211 (303)
....+ +..-.|.=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 65433 2346789999998653
No 120
>PRK05660 HemN family oxidoreductase; Provisional
Probab=54.68 E-value=56 Score=31.75 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=59.5
Q ss_pred hHHHHHHHHHcCCCcccccC-CcC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchHHHHhhCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWL 175 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~ 175 (303)
-++.++.|+++|++.+-+++ +=+ ++...- |... ..+-..+.++.+++.|++++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 35889999999999777766 222 222221 3322 24566788999999999874 6664 57773
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 176 SPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 176 ~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
++.+.|.+-.+.+.+-=-+++..+...=||+.
T Consensus 171 --qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 --QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23445555555555544466777766666653
No 121
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=54.46 E-value=41 Score=32.47 Aligned_cols=72 Identities=21% Similarity=0.493 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh--------CCCC--------ChHhHHHHHHHH----HHHHHHh
Q 022079 135 AGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY--------GSWL--------SPQMQKEFVHLA----KTCFENF 194 (303)
Q Consensus 135 ~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~--------ggw~--------~~~~~~~F~~ya----~~v~~~f 194 (303)
+-.+.=+++++++++.||+||+--+---.|.-+.+++ +.|. +| .-+.|.+.+ +...+.|
T Consensus 92 ~q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~y 170 (333)
T PF05089_consen 92 QQAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLY 170 (333)
T ss_dssp HHHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhc
Confidence 4456678999999999999999887666788887775 2232 22 234555555 4456778
Q ss_pred CCCcceEE--EecCCc
Q 022079 195 GDRVKYWA--TLNEPN 208 (303)
Q Consensus 195 gd~V~~w~--t~NEP~ 208 (303)
| .-.++. +|||-.
T Consensus 171 G-~~~~Y~~D~FnE~~ 185 (333)
T PF05089_consen 171 G-TDHIYAADPFNEGG 185 (333)
T ss_dssp ----SEEE--TTTTS-
T ss_pred C-CCceeCCCccCCCC
Confidence 8 455553 888854
No 122
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=54.45 E-value=43 Score=33.46 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCcccccC-CcC-cccccCCCCC-CChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 100 LEDIGIMHSLGVNSYRFSI-SWP-RILPKGRFGK-VNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W~-ri~P~~~~g~-~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
++.+++|+++|++.+-+++ +-+ ++... - ++ .+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~-~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKN-I-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHH-h-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888887 332 22222 1 21 23 56788999999999999888775 3555
No 123
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=54.38 E-value=39 Score=36.37 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=62.8
Q ss_pred cCCCcccccCC-cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHH--Hh-h----------
Q 022079 109 LGVNSYRFSIS-WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLE--EK-Y---------- 171 (303)
Q Consensus 109 lG~~~~R~si~-W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~--~~-~---------- 171 (303)
+=++.+++++. |.+ .-+. -.+|+.-+---+.+|+.+++.||+.++.+... |.|.--+ ++ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~~-F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD-FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccc-eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 34678999995 876 2211 23555444455699999999999999988642 3333211 11 0
Q ss_pred -----------CCCCChHhHHHHHHHHHHHHHHhCC--CcceEEEecCCcccccc
Q 022079 172 -----------GSWLSPQMQKEFVHLAKTCFENFGD--RVKYWATLNEPNLLTDM 213 (303)
Q Consensus 172 -----------ggw~~~~~~~~F~~ya~~v~~~fgd--~V~~w~t~NEP~~~~~~ 213 (303)
-.++||+.++.|.+. ..+.+.| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~---~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASD---KKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHH---HHhHHHhcCccEEEccCCCCcccccc
Confidence 126789999988873 3333333 25677899999986543
No 124
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=54.14 E-value=35 Score=31.58 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 101 EDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
.+++.+++.|++.+|+.++=|...-....|.-.++.++...+.++.+++.|+++.++.-+|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 6889999999999999876544322211033335678999999999999999998866554
No 125
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.58 E-value=2.1e+02 Score=27.28 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=33.4
Q ss_pred Ccccc---cCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 121 PRILP---KGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 121 ~ri~P---~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
.+..| ... +.+|.+-+..++++.+.++++|-+.++-|+|.
T Consensus 63 ~~~~~~~~~~~-~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGNV-VLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCCc-ccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 35555 323 67888899999999999999999999999994
No 126
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=53.17 E-value=49 Score=32.13 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=58.7
Q ss_pred ccccchHHHHHHHHHcCCCcccccCCcCcccccC---CCC--CCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHH
Q 022079 94 DHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKG---RFG--KVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (303)
Q Consensus 94 d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~---~~g--~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~ 168 (303)
+.+-.-++-++.+.++|++-+-+|++ .+-|.- -.| .+| +++..++.+.+.+.||.++++ |.|+
T Consensus 198 ng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l- 265 (414)
T COG2100 198 NGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL- 265 (414)
T ss_pred CceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec-
Confidence 34555667789999999997777773 333331 014 466 888999999999999999885 7787
Q ss_pred HhhCCCCChHhHHHHHHHHHHHH
Q 022079 169 EKYGSWLSPQMQKEFVHLAKTCF 191 (303)
Q Consensus 169 ~~~ggw~~~~~~~~F~~ya~~v~ 191 (303)
.|. |.+-...+.+||+.+-
T Consensus 266 ---PG~-ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 ---PGV-NDDEMPKIIEWAREIG 284 (414)
T ss_pred ---CCc-ChHHHHHHHHHHHHhC
Confidence 454 4445677888888774
No 127
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=52.67 E-value=1e+02 Score=31.08 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHH--------HHHHHhCC----CcceEEEecCC
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAK--------TCFENFGD----RVKYWATLNEP 207 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~--------~v~~~fgd----~V~~w~t~NEP 207 (303)
..++++.|+..|.+|++.+.= |-...+....|.+|+. ..-+..|. .|+||.+=||-
T Consensus 107 t~EF~~~~e~iGaep~~avN~------------Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 107 THEFMDWCELIGAEPYIAVNL------------GSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred HHHHHHHHHHhCCceEEEEec------------CCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 468999999999999999852 2223344556666653 23333444 49999999997
No 128
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=52.48 E-value=30 Score=32.38 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 022079 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~ 162 (303)
.+.+++-+-+.=.++..|-.+-|++ .+... ...++++.++++|+++++.+..++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~ 69 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTGL---PDERLIEAAKRRGVKPLLVITNLT 69 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCCC---CCHHHHHHHHHCCCeEEEEEecCC
Confidence 5566666666666788899998764 33321 236889999999999999997653
No 129
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=52.44 E-value=84 Score=29.74 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCeeEEeecCCC-----CchHHHHh------------------------hCCCCChHhHHH
Q 022079 132 VNPAGINFYNYLIDNLLLRGIEPFVTIYHHD-----FPQQLEEK------------------------YGSWLSPQMQKE 182 (303)
Q Consensus 132 ~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~-----~P~wl~~~------------------------~ggw~~~~~~~~ 182 (303)
+|.+.+--..++|+.|++.|+++++.++-+- .|...+.. +-.|+||+.++.
T Consensus 58 ~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~w 137 (317)
T cd06600 58 WDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREW 137 (317)
T ss_pred echhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHH
Confidence 3433344457899999999999887764321 12221110 012678999998
Q ss_pred HHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 183 FVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 183 F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
|.+..+.+....|- .-.|.=+|||..+
T Consensus 138 w~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 138 WAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred HHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 88877776544432 3466889999643
No 130
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=52.44 E-value=36 Score=30.59 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCC-CCCCChhHHHHHHHHHHHHHHcCCeeEEee-cCCCCc
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGR-FGKVNPAGINFYNYLIDNLLLRGIEPFVTI-YHHDFP 164 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~-~g~~n~~~~~~y~~~i~~l~~~GI~pivtL-~H~~~P 164 (303)
-+.+++-++.++++|.+.+|+..... |... ..+.....++.++++.+.+.+.||...+=. ++++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 45677889999999999998654321 1110 011122345668888888999999877743 334433
No 131
>PRK07094 biotin synthase; Provisional
Probab=52.27 E-value=39 Score=31.76 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=42.5
Q ss_pred chHHHHHHHHHcCCCcccccCC-c-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 98 RFLEDIGIMHSLGVNSYRFSIS-W-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~-W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
.-+++++.|+++|++.+-++++ - +++...-. ... ..+.+.+.++.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~-~~~---s~~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH-PGM---SFENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC-CCC---CHHHHHHHHHHHHHcCCeecceEE-EECC
Confidence 4578999999999999888884 3 24433311 112 256788899999999998665543 3444
No 132
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.85 E-value=43 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCcccccC-Cc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P 164 (303)
-++.+++|+++|++.+.+++ += .++...- |.-. ..+-..+.|+.+++.|+..+ ++|. +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHAL--HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 45789999999999776666 23 2233221 3322 25667899999999999864 6664 5666
No 133
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.03 E-value=97 Score=29.75 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=62.8
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--CCCCchHHHHh------
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY--HHDFPQQLEEK------ 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~--H~~~P~wl~~~------ 170 (303)
..+|++.+.+.|++.+|+....+.. +...+.++.+++.|+++.+.+. |...|..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES 154 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh
Confidence 3689999999999999987743221 2357899999999999988773 44445544321
Q ss_pred h----------CCCCChHhHHHHHHHHHHHHHHhCCCcc-eEEEecCCcc
Q 022079 171 Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNL 209 (303)
Q Consensus 171 ~----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~-~w~t~NEP~~ 209 (303)
+ .|-.. ++...++++.+-+++++.++ .+..-|-..+
T Consensus 155 ~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 201 (333)
T TIGR03217 155 YGADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLSL 201 (333)
T ss_pred cCCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCch
Confidence 2 23333 55677777888788874433 3456665554
No 134
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=50.65 E-value=38 Score=36.34 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCcccccCCcCcc-------cccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeecC--CCC------
Q 022079 101 EDIGIMHSLGVNSYRFSISWPRI-------LPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIYH--HDF------ 163 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri-------~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~H--~~~------ 163 (303)
+-++.+|+||+|++-+.=-...- .|..- -.++. ...+-++++|++|+++||++|+++-+ ..-
T Consensus 255 ~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~-fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl 333 (758)
T PLN02447 255 DVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNF-FAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGL 333 (758)
T ss_pred HHHHHHHHcCCCEEEECCccccCCCCCCCcCcccC-cccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccc
Confidence 34899999999999765322211 01100 01111 12355899999999999999999653 211
Q ss_pred -------chHHHHhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 022079 164 -------PQQLEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 164 -------P~wl~~~~gg----w-------~~~~~~~~F~~ya~~v~~~fg 195 (303)
+.|+...-.| | .++++.+.+.+-++.-+++|+
T Consensus 334 ~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 334 NGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222110011 2 356777777777777787773
No 135
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=50.57 E-value=63 Score=29.16 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCC
Q 022079 137 INFYNYLIDNLLLRGIEPFVTIYHHD 162 (303)
Q Consensus 137 ~~~y~~~i~~l~~~GI~pivtL~H~~ 162 (303)
.+...+.|..++++|+++++++.-+.
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~ 75 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNH 75 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCC
Confidence 35567889999999999999986443
No 136
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=50.47 E-value=24 Score=35.10 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCcccccCC-cC-cccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS-WP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P 164 (303)
-++.+++|+++|++.+-++++ =+ ++... - +... ..+.+.+.++.+++.|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~-l-~r~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQA-V-NRIQ--PEEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHH-h-CCCC--CHHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 368899999999996666652 22 22222 1 2221 256678999999999997 445553 5666
No 137
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=50.31 E-value=83 Score=30.70 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHH
Q 022079 106 MHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVH 185 (303)
Q Consensus 106 ~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ 185 (303)
..+.|++.+|+ -| |.+... -+..+.+++.++++|+..=+..+|-.++.-+.++||+-+.+..++.-.+
T Consensus 97 a~~~G~~~iRI-------NP----GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 97 AAEAGADALRI-------NP----GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHHhCCCEEEE-------CC----CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 34688999865 33 666321 2578999999999999999999999999999999876454556666666
Q ss_pred HHHHH
Q 022079 186 LAKTC 190 (303)
Q Consensus 186 ya~~v 190 (303)
+++.+
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 66654
No 138
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=49.80 E-value=30 Score=32.38 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
-..-.+|++.+.++|++.+-+.++=|...-....+.=-++.++.+.++++.++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344679999999999999888775554433211133335789999999999999999999888
No 139
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=49.80 E-value=29 Score=34.11 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCcccccC------CcCcccccCCCCCCC--hhHHHHHHHHHHHHHHcCCeeEEee--cCC
Q 022079 101 EDIGIMHSLGVNSYRFSI------SWPRILPKGRFGKVN--PAGINFYNYLIDNLLLRGIEPFVTI--YHH 161 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si------~W~ri~P~~~~g~~n--~~~~~~y~~~i~~l~~~GI~pivtL--~H~ 161 (303)
+-++.+++||++++=++= ++.+--...- -.+| .-.++-.++++++++++||++++++ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy-~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY-TKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch-hhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 667889999999884332 1211111100 1222 2356788999999999999999998 553
No 140
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=49.79 E-value=26 Score=34.92 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCC--CCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P 164 (303)
-++.+++|+++|++.+-+++ .-.-|+-- .+.. ...+...+.++.+++.|++ +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 46889999999999666665 22222210 0221 1256678899999999997 556664 5666
No 141
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=49.71 E-value=63 Score=34.79 Aligned_cols=104 Identities=15% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCC--cccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec---CCCCc-----------
Q 022079 101 EDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY---HHDFP----------- 164 (303)
Q Consensus 101 eDi~l~k~lG~~--~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~---H~~~P----------- 164 (303)
+-++.+.++|+. ..=..|+|-.-..+ -.+|+...-...++++.|+++|++.++.+. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykD---FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~ 391 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKD---FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKD 391 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccc---eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhc
Confidence 335666677765 55555555322222 346666666689999999999999999886 22222
Q ss_pred hHHHHh----------hCC------CCChHhHHHHHHHHHHHHHHhCCCcc---eEEEecCCcccc
Q 022079 165 QQLEEK----------YGS------WLSPQMQKEFVHLAKTCFENFGDRVK---YWATLNEPNLLT 211 (303)
Q Consensus 165 ~wl~~~----------~gg------w~~~~~~~~F~~ya~~v~~~fgd~V~---~w~t~NEP~~~~ 211 (303)
.|..+. ..| ++||.+++ ++....++|.+.+. +|+-+|||.-+.
T Consensus 392 v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 392 VLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eeeecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCC
Confidence 000000 012 55665444 44556668888875 799999997554
No 142
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=49.22 E-value=37 Score=37.01 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHHcCCCcccccCC---------------cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSIS---------------WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~---------------W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
+....+-+..+++||++++=+|=- +.+|.|.- | +.+-+++++++++++||++|+++-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l--G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL--G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC--C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 344778889999999998865543 33343331 2 346789999999999999999863
No 143
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.09 E-value=56 Score=32.81 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc----hHHHH---h-
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP----QQLEE---K- 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P----~wl~~---~- 170 (303)
.++|++.+.+.|++.+|+.++-+.+ .-..+.|+.+++.|+.+.+++..-+-| ..+.+ +
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l 163 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEM 163 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 3566799999999999998865433 125668899999999888777654545 22211 1
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 171 ------------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 171 ------------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
-.|..+|. ...+.++.+-++++ ..-...+-|-..+.
T Consensus 164 ~~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 164 QEMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred HHcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 04555554 45566666767775 33345666666543
No 144
>PRK14706 glycogen branching enzyme; Provisional
Probab=48.84 E-value=1.3e+02 Score=31.74 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=53.6
Q ss_pred HHHHHHcCCCcccccC--------CcCcccccCCCCCCCh--hHHHHHHHHHHHHHHcCCeeEEeec--CCC--------
Q 022079 103 IGIMHSLGVNSYRFSI--------SWPRILPKGRFGKVNP--AGINFYNYLIDNLLLRGIEPFVTIY--HHD-------- 162 (303)
Q Consensus 103 i~l~k~lG~~~~R~si--------~W~ri~P~~~~g~~n~--~~~~~y~~~i~~l~~~GI~pivtL~--H~~-------- 162 (303)
++.+|+||++++-+.= +| .-.|..- -.++. ...+-++++|++|+++||++|+++- |+.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~w-GY~~~~~-~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSW-GYQVTGY-YAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCC-CcCcccc-cccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 3678999999976542 12 0011000 01111 1245689999999999999999853 532
Q ss_pred ---CchH-HHHhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 022079 163 ---FPQQ-LEEKYGS----W-------LSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 163 ---~P~w-l~~~~gg----w-------~~~~~~~~F~~ya~~v~~~fg 195 (303)
.|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 267888888888888888874
No 145
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=48.56 E-value=61 Score=33.23 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=63.1
Q ss_pred hHHHHHHHHHcCCCcccccCC--cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~ 176 (303)
-++.+++|+++|++.+-++++ -.+++..- +.- ...+-..+.++.+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~i--nRg--ht~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERT--KRG--HTVRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHh--CCC--CCHHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 358899999999987777772 33333221 221 1256677889999999999888775 56662
Q ss_pred hHhHHHHHHHHHHHHH--HhC-CCcceEEEecCCccccccccccCcc
Q 022079 177 PQMQKEFVHLAKTCFE--NFG-DRVKYWATLNEPNLLTDMAYIRGTY 220 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~--~fg-d~V~~w~t~NEP~~~~~~gy~~g~~ 220 (303)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|+.....-|..|.|
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y 314 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEY 314 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCC
Confidence 123445555555554 233 4566665554555444333444444
No 146
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=48.43 E-value=60 Score=31.05 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=48.1
Q ss_pred CcCCccc--cchHHHHHHHHHcCCCcccccCC----c-------CcccccC--------CCCCCChhHHHHHHHHHHHHH
Q 022079 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSIS----W-------PRILPKG--------RFGKVNPAGINFYNYLIDNLL 148 (303)
Q Consensus 90 ~~a~d~y--~~~~eDi~l~k~lG~~~~R~si~----W-------~ri~P~~--------~~g~~n~~~~~~y~~~i~~l~ 148 (303)
|+|-.++ ...++-|+.|+..++|.+.+-++ | +++-..+ ..|.+- -+-++++++.++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHH
Confidence 4444444 34788899999999998877662 3 2222111 002344 344799999999
Q ss_pred HcCCeeEEeecCCCCchHH
Q 022079 149 LRGIEPFVTIYHHDFPQQL 167 (303)
Q Consensus 149 ~~GI~pivtL~H~~~P~wl 167 (303)
++||++|.-+ |+|...
T Consensus 86 ~rgI~vIPEi---D~PGH~ 101 (329)
T cd06568 86 ERHITVVPEI---DMPGHT 101 (329)
T ss_pred HcCCEEEEec---CCcHHH
Confidence 9999999876 677554
No 147
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=48.39 E-value=27 Score=35.52 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=39.9
Q ss_pred HHHHHHHHc--CCeeEEeecCCCCchHHHHh--h--CCCCC----hHhHHHHHHHHHHHHHHhCCC-cceE--EEecCCc
Q 022079 142 YLIDNLLLR--GIEPFVTIYHHDFPQQLEEK--Y--GSWLS----PQMQKEFVHLAKTCFENFGDR-VKYW--ATLNEPN 208 (303)
Q Consensus 142 ~~i~~l~~~--GI~pivtL~H~~~P~wl~~~--~--ggw~~----~~~~~~F~~ya~~v~~~fgd~-V~~w--~t~NEP~ 208 (303)
.+|+++++. +|+.+.+- |..|.|+-.. + +|... ++..+.|++|--+.++.|... |+.| .+-|||.
T Consensus 157 p~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 157 PLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 466665543 47777776 8999998432 1 24433 356677888877778888664 6666 5889998
Q ss_pred cc
Q 022079 209 LL 210 (303)
Q Consensus 209 ~~ 210 (303)
..
T Consensus 235 ~~ 236 (496)
T PF02055_consen 235 NG 236 (496)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 148
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=47.76 E-value=98 Score=25.83 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcCCCcccccCC-cCc-ccccCCCCCCChhHHHHHHHHHHHHHHcC-CeeEEee
Q 022079 98 RFLEDIGIMHSLGVNSYRFSIS-WPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRG-IEPFVTI 158 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~-W~r-i~P~~~~g~~n~~~~~~y~~~i~~l~~~G-I~pivtL 158 (303)
.-++.++.|+++|++.+.+|+. ++. +...-. ...+ .+.+.+.++.+++.| +.+.+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~-~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN-RGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc-CCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3467899999999999999885 543 221111 1122 578899999999999 6655544
No 149
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.46 E-value=1.1e+02 Score=28.83 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCeeEEeecCCC---CchHHHHh---h------C----------------CCCChHhHHHHH
Q 022079 133 NPAGINFYNYLIDNLLLRGIEPFVTIYHHD---FPQQLEEK---Y------G----------------SWLSPQMQKEFV 184 (303)
Q Consensus 133 n~~~~~~y~~~i~~l~~~GI~pivtL~H~~---~P~wl~~~---~------g----------------gw~~~~~~~~F~ 184 (303)
|.+.+---+++|+.|++.|+++++.++-+- .|..-+.+ | | .++||+..+.|.
T Consensus 68 d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~ 147 (317)
T cd06599 68 NKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWK 147 (317)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHH
Confidence 333333457899999999999998775432 23221110 0 0 146788888887
Q ss_pred HHHHHHHHHhCCCcceEEEecCCcc
Q 022079 185 HLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 185 ~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
+..+......|= .-.|+=+|||.+
T Consensus 148 ~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 148 EGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred HHHHHHHhcCCC-cEEEecCCCCcc
Confidence 766554444431 245678999974
No 150
>PLN02389 biotin synthase
Probab=47.42 E-value=45 Score=32.67 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=42.4
Q ss_pred chHHHHHHHHHcCCCcccccCCcCc-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~r-i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.-+|.++.||++|++.|-.+++=++ +.|.-. .. ..++..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~-~~---~s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI-TT---RSYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC-CC---CCHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999988875222 444311 11 1367788999999999999876653
No 151
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=47.33 E-value=36 Score=34.47 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCC--CCCCChhHHHHHHHHHHHHHHcCC-eeEEeecCCCCchHHHHhhCCCCC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGI-EPFVTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~~n~~~~~~y~~~i~~l~~~GI-~pivtL~H~~~P~wl~~~~ggw~~ 176 (303)
++-++.|+++|++ |+||.-...-++-- .|.. -..+-..+.++.+++.|+ .+.++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 5779999999998 55554433332210 0332 135677899999999999 5667775 57773
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcceEEEecCCc
Q 022079 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPN 208 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~ 208 (303)
++.+.|.+-.+.+.+-=-+.+......=+|.
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 2344555555555433334454444333343
No 152
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=46.57 E-value=74 Score=31.17 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCcccccC-Cc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCCh
Q 022079 100 LEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSP 177 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~ 177 (303)
++.++.|+++|+|.+-+++ +- +++... - |.... .+-..+.++.+++.+..+-++|. +++|.-
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~-l-gR~h~--~~~~~~ai~~~~~~~~~v~~DlI-~GlPgq----------- 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKK-L-GRTHD--CMQAIKTIEAANTIFPRVSFDLI-YARSGQ----------- 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHH-c-CCCCC--HHHHHHHHHHHHHhCCcEEEEee-cCCCCC-----------
Confidence 5889999999999777777 33 233333 1 44321 44566677888888888999987 677731
Q ss_pred HhHHHHHHHHHHHHHHhCCCcceEEEecCCcccc
Q 022079 178 QMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLT 211 (303)
Q Consensus 178 ~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~ 211 (303)
+.+.+.+=++.+.+-=-++|..+...=||+...
T Consensus 175 -t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l 207 (390)
T PRK06582 175 -TLKDWQEELKQAMQLATSHISLYQLTIEKGTPF 207 (390)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecCEEccCChH
Confidence 233444445555543345677777666776543
No 153
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=46.55 E-value=55 Score=30.06 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHHHHHHHHcC----CCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 100 LEDIGIMHSLG----VNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 100 ~eDi~l~k~lG----~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.+|++.+.+.| ++.+|+.++-+.+.-....+.=..+.++...+.++.+++.|+++.+++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 135 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAE 135 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeee
Confidence 78999999999 9999997765544221110222234688889999999999999887664
No 154
>PRK12677 xylose isomerase; Provisional
Probab=46.40 E-value=1.4e+02 Score=29.32 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=44.9
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchHHHHhhCCCCCh
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSWLSP 177 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw~~~ 177 (303)
..|-++.++++|++.+=+.. ..+.|-. ..+.+.-+..+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 67889999999999885532 2244432 1111111357788888999999976 55544555543 23677764
No 155
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=45.95 E-value=45 Score=36.11 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCccccc--CCC----CCCCh--hHHHHHHHHHHHHHHcCCeeEEee--cCCC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPK--GRF----GKVNP--AGINFYNYLIDNLLLRGIEPFVTI--YHHD 162 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~--~~~----g~~n~--~~~~~y~~~i~~l~~~GI~pivtL--~H~~ 162 (303)
+....+-++.+++||++++=+|=-+.-.-.+ |-. ..+|+ .+.+-+++++++++++||.+|+++ +|..
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3447788899999999998766544321100 100 12232 245678999999999999999985 4543
No 156
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=45.81 E-value=1.3e+02 Score=28.66 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCeeEEeecCC-----CCchHHHHh-------------h--------C---CCCChHhHHHHHHHHHHH
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHH-----DFPQQLEEK-------------Y--------G---SWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~-----~~P~wl~~~-------------~--------g---gw~~~~~~~~F~~ya~~v 190 (303)
-+++++.|+++|+++++..+-+ +.|..-+.+ | + .|+||+.++.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4789999999999988765322 123222110 0 1 267888888877666555
Q ss_pred HHHhCCCcc-eEEEecCCccc
Q 022079 191 FENFGDRVK-YWATLNEPNLL 210 (303)
Q Consensus 191 ~~~fgd~V~-~w~t~NEP~~~ 210 (303)
. ..-|+ .|.=+|||..+
T Consensus 146 ~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred h---hCCCceEeecCCCcccc
Confidence 4 23355 55889999865
No 157
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.44 E-value=70 Score=30.11 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=44.9
Q ss_pred chHHHHHHHHHcCCCcccccC----CcCcccccC---CCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHH
Q 022079 98 RFLEDIGIMHSLGVNSYRFSI----SWPRILPKG---RFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQL 167 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si----~W~ri~P~~---~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl 167 (303)
-+++-|+.|+.+|+|.+-+-+ .++. .|.- . |.+..+ -++++++.++++||++|.-+ ++|..+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~-~~yT~~---ei~ei~~yA~~~gI~vIPei---d~pGH~ 86 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMR-GAYTKE---EIREIDDYAAELGIEVIPLI---QTLGHL 86 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCC-CCcCHH---HHHHHHHHHHHcCCEEEecC---CCHHHH
Confidence 478889999999999887644 2221 2221 2 566654 46999999999999999986 667554
No 158
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=45.37 E-value=69 Score=37.51 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCccccc--CCC----CCCChh--HHHHHHHHHHHHHHcCCeeEEee--cCCC
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPK--GRF----GKVNPA--GINFYNYLIDNLLLRGIEPFVTI--YHHD 162 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~--~~~----g~~n~~--~~~~y~~~i~~l~~~GI~pivtL--~H~~ 162 (303)
+....+-++.+++||++++=+|=-+.-.--+ |.+ ..+|++ +.+-++++++.|+++||++|+++ +|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 3446777899999999999766544311000 000 122221 45668999999999999999986 3543
No 159
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=45.05 E-value=93 Score=29.97 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHH
Q 022079 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQK 181 (303)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~ 181 (303)
+.+.+|++|.+.+.|=+=|. |+.. -++|....++.+++.++|++.+|--++=+..+|.+. .+. .+.++..
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~-~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~----~~~~yak 180 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDA-EEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN----GSVEFAK 180 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCC-hHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC----CcHHHHH
Confidence 36889999999999988774 3322 458888899999999999999999999887765442 111 1122222
Q ss_pred HHHHHHHHHHHHhCC---CcceE
Q 022079 182 EFVHLAKTCFENFGD---RVKYW 201 (303)
Q Consensus 182 ~F~~ya~~v~~~fgd---~V~~w 201 (303)
.--+.+-...+.|++ .|+.|
T Consensus 181 ~kP~~V~~a~kefs~~~~gvDVl 203 (325)
T TIGR01232 181 VKPRKVNEAMKLFSEPRFNVDVL 203 (325)
T ss_pred hChHHHHHHHHHhccCCCCCcEE
Confidence 223334445666766 47766
No 160
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=44.89 E-value=99 Score=29.82 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCcccccC-Cc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCCC
Q 022079 100 LEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~~ 176 (303)
++.+++|+++|++.+-+++ += .++...- |... ..+-+.+.++.++++|+. +.+++. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~--~~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTH--TIQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6889999999999666665 22 2333221 3321 245678999999999997 556665 56662
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
++.+.|.+=.+.+.+-=-+.|..+...=||+.
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23445555555444322245555554446653
No 161
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=44.47 E-value=54 Score=32.15 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=54.6
Q ss_pred HcCCCcccccCCcCcccccCCCCCCChhHHHHHHHH--HHHHHHcCCeeEEeecCCCCchHHHHhh---CC---CCChHh
Q 022079 108 SLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYL--IDNLLLRGIEPFVTIYHHDFPQQLEEKY---GS---WLSPQM 179 (303)
Q Consensus 108 ~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~--i~~l~~~GI~pivtL~H~~~P~wl~~~~---gg---w~~~~~ 179 (303)
++|++..|+.|.=.+.--. |.+|. +|+++ -+..++.|++++.+- |..|.|+.... || -+.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~---g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~-- 145 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG---GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKY-- 145 (433)
T ss_pred ccCceEEEEEecccccccC---CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccch--
Confidence 4788888887755443222 45552 33332 233678899999887 78999986531 33 3333
Q ss_pred HHHHHHHHHHH---HHHhCC---CcceEEEecCCccc
Q 022079 180 QKEFVHLAKTC---FENFGD---RVKYWATLNEPNLL 210 (303)
Q Consensus 180 ~~~F~~ya~~v---~~~fgd---~V~~w~t~NEP~~~ 210 (303)
+.++.||+.+ +..+++ .+.+-.+=|||.-.
T Consensus 146 -e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 146 -EKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred -hHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4455555444 444433 45666789999865
No 162
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=44.21 E-value=68 Score=31.97 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCcccccCC-cC-cccccCCCCCCChhHHHHHHHHHHHHHHcCC-eeEEeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS-WP-RILPKGRFGKVNPAGINFYNYLIDNLLLRGI-EPFVTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~-W~-ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI-~pivtL~H~~~P 164 (303)
-++.+++|+++|++.+.++++ =+ ++...- +... ..+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQ--PFEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCC--CHHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 468899999999997777662 22 122111 2221 25567889999999999 5666664 5666
No 163
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.20 E-value=2.3e+02 Score=26.95 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=45.8
Q ss_pred chHHHHHHHHHcCCCcccccC----CcCc---ccccCCC-----CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch
Q 022079 98 RFLEDIGIMHSLGVNSYRFSI----SWPR---ILPKGRF-----GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si----~W~r---i~P~~~~-----g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~ 165 (303)
..++-|+.|+..++|.+.+-+ +|+- -.|+-.. |.+.. +-++++++.++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 477789999999999887766 5642 2333100 24553 457999999999999999987 6775
Q ss_pred HH
Q 022079 166 QL 167 (303)
Q Consensus 166 wl 167 (303)
..
T Consensus 93 H~ 94 (311)
T cd06570 93 HA 94 (311)
T ss_pred ch
Confidence 43
No 164
>PLN02960 alpha-amylase
Probab=44.12 E-value=40 Score=36.77 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=58.4
Q ss_pred cccchHHH-HHHHHHcCCCcccccCC--------c-------CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 95 HYHRFLED-IGIMHSLGVNSYRFSIS--------W-------PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 95 ~y~~~~eD-i~l~k~lG~~~~R~si~--------W-------~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.|.-..+. ++.+|+||+|++-+.=- | -.+.|. - | ..+-++.+|++|+++||.+|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-y-G-----tp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-F-G-----TPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-c-C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 35555444 89999999999875421 1 111111 0 2 23558999999999999999997
Q ss_pred --cCCCC--c--hHHHH-----------h--hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 022079 159 --YHHDF--P--QQLEE-----------K--YGSW-------LSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 159 --~H~~~--P--~wl~~-----------~--~ggw-------~~~~~~~~F~~ya~~v~~~fg 195 (303)
.|+.. + .+..+ + +..| .++++.+.+.+=++.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 1 11000 0 0112 357788888888888888884
No 165
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=43.87 E-value=1.4e+02 Score=29.44 Aligned_cols=102 Identities=15% Similarity=0.212 Sum_probs=62.0
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCC--CCC--CChhHH-HHHHHHHHHHHHcCCeeEEeec----------CCC
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGR--FGK--VNPAGI-NFYNYLIDNLLLRGIEPFVTIY----------HHD 162 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~--~n~~~~-~~y~~~i~~l~~~GI~pivtL~----------H~~ 162 (303)
...+.++.++++|++.+=+.--|..---... .|. +|.+.+ +-...+++.+++.||++=+=+- .-.
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~ 138 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYRE 138 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHh
Confidence 4566788999999999888888965311100 021 232222 1268899999999999755331 114
Q ss_pred CchHHHHhh-----CC-------CCChHhHHHHHHHHHHHHHHhCCCcceE
Q 022079 163 FPQQLEEKY-----GS-------WLSPQMQKEFVHLAKTCFENFGDRVKYW 201 (303)
Q Consensus 163 ~P~wl~~~~-----gg-------w~~~~~~~~F~~ya~~v~~~fgd~V~~w 201 (303)
.|.|+...- .| ..+|++.+...+-...+++.+| |+|.
T Consensus 139 hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYi 187 (394)
T PF02065_consen 139 HPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYI 187 (394)
T ss_dssp SBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEE
T ss_pred CccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEE
Confidence 588864310 11 3578888888888888888886 5554
No 166
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=43.75 E-value=94 Score=29.16 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCccc-ccCC-c-----CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 99 FLEDIGIMHSLGVNSYR-FSIS-W-----PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R-~si~-W-----~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
.++.++.||++|++.+- .+.+ - .++.|. ... .+.+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2321 1 122232 222 45668999999999999988764 3444
No 167
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=43.65 E-value=1.5e+02 Score=25.46 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=47.8
Q ss_pred HHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch---HHHHh--------
Q 022079 102 DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ---QLEEK-------- 170 (303)
Q Consensus 102 Di~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~---wl~~~-------- 170 (303)
|.+.+|+.|++.+=+=+. +|. +..| ..|..-++.++++||. +..+||..|. --+.+
T Consensus 13 d~~~~k~~gi~fviiKat------eG~-~y~D----~~~~~~~~~a~~aGl~--~G~Yhy~~~~~~a~~qA~~f~~~~~~ 79 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGT-TFVD----SYFNENYNGAKAAGLK--VGFYHFLVGTSNPEEQAENFYNTIKG 79 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCC-cccC----HhHHHHHHHHHHCCCc--eEEEEEeeCCCCHHHHHHHHHHhccc
Confidence 556677767553322111 222 3456 3577777888888873 5667765541 11111
Q ss_pred -------------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEE
Q 022079 171 -------------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWA 202 (303)
Q Consensus 171 -------------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~ 202 (303)
.++....+..+....|++.+-++.|-++-.+.
T Consensus 80 ~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 80 KKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred cCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 02222233456677778887777777655544
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.95 E-value=87 Score=28.66 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.+|++.+++.|++.+|+..+-+.+ .-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 689999999999999987755432 2357789999999999988884
No 169
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.54 E-value=72 Score=28.93 Aligned_cols=78 Identities=9% Similarity=0.213 Sum_probs=45.0
Q ss_pred cCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHH-------------------Hhh--CC--
Q 022079 117 SISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE-------------------EKY--GS-- 173 (303)
Q Consensus 117 si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~-------------------~~~--gg-- 173 (303)
.+.|..+.++|. -.... ....+..+++.++++|+++++.+-.++...... .+| .|
T Consensus 27 ~~~f~~i~~~G~-l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGId 104 (253)
T cd06545 27 NLAFANPDANGT-LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGID 104 (253)
T ss_pred EEEEEEECCCCe-EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCcee
Confidence 334556655532 11110 123567889999999999999987654332110 012 34
Q ss_pred --CCChHh-HHHHHHHHHHHHHHhCC
Q 022079 174 --WLSPQM-QKEFVHLAKTCFENFGD 196 (303)
Q Consensus 174 --w~~~~~-~~~F~~ya~~v~~~fgd 196 (303)
|+.+.. .+.|..+++.+-+++..
T Consensus 105 iDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 105 VDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred EEeeccCccHhHHHHHHHHHHHHHhh
Confidence 544322 46788888888777753
No 170
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=41.33 E-value=1.8e+02 Score=29.03 Aligned_cols=89 Identities=17% Similarity=0.293 Sum_probs=53.0
Q ss_pred hHHHHHHHHHcCCCcccccC--CcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchH--HHHhhCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI--SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQ--LEEKYGS 173 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si--~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~w--l~~~~gg 173 (303)
--+|++.++++.--.-|+++ .|.. +|.+.++ +.++++||+.- ++..-|..|+- -.-++|.
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd~---------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWDK---------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCc---------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 45788888877765556555 6722 2544443 88999999988 66665665621 1113366
Q ss_pred CCCh--HhHHHHHHHHHHH---HHHhCCC-cceEE
Q 022079 174 WLSP--QMQKEFVHLAKTC---FENFGDR-VKYWA 202 (303)
Q Consensus 174 w~~~--~~~~~F~~ya~~v---~~~fgd~-V~~w~ 202 (303)
..|| .+.+...+-+..| .+..|.+ |..|+
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 6664 4555555555544 5566654 45454
No 171
>PRK10426 alpha-glucosidase; Provisional
Probab=41.32 E-value=1.8e+02 Score=30.64 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCC--cccccCCcCcccccCCCC-------CCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchH
Q 022079 99 FLEDIGIMHSLGVN--SYRFSISWPRILPKGRFG-------KVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQ 166 (303)
Q Consensus 99 ~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~g-------~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~w 166 (303)
..+-++.+++.|+. ++=+. .|.......- | .+|.+.+--.+++|+.|++.|+++++.+.=+ +.|..
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~-g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y 300 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSF-GKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLC 300 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccc-cccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHH
Confidence 44556778888864 44334 5764422111 1 3355545556889999999999988877532 33333
Q ss_pred HHHh---h------C---------------CCCChHhHHHHHHHHHHHHHHhCCCcceE-EEecCC
Q 022079 167 LEEK---Y------G---------------SWLSPQMQKEFVHLAKTCFENFGDRVKYW-ATLNEP 207 (303)
Q Consensus 167 l~~~---~------g---------------gw~~~~~~~~F~~ya~~v~~~fgd~V~~w-~t~NEP 207 (303)
-+.+ | | .++||+..+.|.+..+......| |+.| .=+||+
T Consensus 301 ~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 301 EEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 2211 0 1 16789999999877665444454 6666 788994
No 172
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=41.28 E-value=61 Score=31.20 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred CcCCccc--cchHHHHHHHHHcCCCcccccCCcC---ccc----ccCC-CC------CCChhHHHHHHHHHHHHHHcCCe
Q 022079 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSISWP---RIL----PKGR-FG------KVNPAGINFYNYLIDNLLLRGIE 153 (303)
Q Consensus 90 ~~a~d~y--~~~~eDi~l~k~lG~~~~R~si~W~---ri~----P~~~-~g------~~n~~~~~~y~~~i~~l~~~GI~ 153 (303)
|+|-.++ ...++-|+.|+..++|.+.+-++=. ||+ |+-. .| .+. -+=++++|+.++++||+
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~ 85 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIR 85 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCE
Confidence 4444443 3477889999999999888765311 332 2100 02 244 34579999999999999
Q ss_pred eEEeecCCCCchHH
Q 022079 154 PFVTIYHHDFPQQL 167 (303)
Q Consensus 154 pivtL~H~~~P~wl 167 (303)
+|.-+ |+|...
T Consensus 86 vIPEI---D~PGH~ 96 (348)
T cd06562 86 VIPEI---DTPGHT 96 (348)
T ss_pred EEEec---cCchhh
Confidence 99987 778654
No 173
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=40.68 E-value=1.1e+02 Score=29.77 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=59.8
Q ss_pred hHHHHHHHHHcCCCcccccC-Cc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSI-SW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si-~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~ 176 (303)
-.+.++.|+++|+|.+.+++ +- +++... - |... ..+-..+.++.+++.++.+.++|. +++|.-
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~-l-~R~~--~~~~~~~ai~~~~~~~~~v~~dli-~GlPgq---------- 167 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRF-L-GRLH--SVAEALAAIDLAREIFPRVSFDLI-YARPGQ---------- 167 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-c-CCCC--CHHHHHHHHHHHHHhCccEEEEee-cCCCCC----------
Confidence 34899999999999777777 32 233332 1 3332 244556788888888999999886 577731
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccc
Q 022079 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTD 212 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~ 212 (303)
+.+.+.+=.+.+.+-=-++|..+...-||+....
T Consensus 168 --t~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~ 201 (380)
T PRK09057 168 --TLAAWRAELKEALSLAADHLSLYQLTIEEGTAFY 201 (380)
T ss_pred --CHHHHHHHHHHHHhcCCCeEEeecceecCCChHH
Confidence 2233333344444322346777777777775433
No 174
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.15 E-value=1e+02 Score=25.57 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCC
Q 022079 136 GINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGD 196 (303)
Q Consensus 136 ~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd 196 (303)
..+=+.-+++.|++.|++|++.+. --.+.|.. |-|. +++..+.|.+=.+..++++|=
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~-PvNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQ-PVNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHHcCCceEEEec-CCcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCC
Confidence 456678899999999999999884 11234543 5665 455677777777788888875
No 175
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=39.95 E-value=1e+02 Score=30.83 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.9
Q ss_pred cccchHHHH-----HHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 022079 95 HYHRFLEDI-----GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (303)
Q Consensus 95 ~y~~~~eDi-----~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 160 (303)
.|+.|.+|+ ++..+-|++.||+. ...|. ..-...-++..+++|.....+++.
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF------------DAlND--~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF------------DALND--VRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec------------hhccc--hhHHHHHHHHHHhcCceeEEEEEe
Confidence 477788884 77889999999863 22331 345677888999999999888874
No 176
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.55 E-value=3.1e+02 Score=25.92 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=43.3
Q ss_pred chHHHHHHHHHcCCCcccccC--CcCc---ccccC----------------------CCCCCChhHHHHHHHHHHHHHHc
Q 022079 98 RFLEDIGIMHSLGVNSYRFSI--SWPR---ILPKG----------------------RFGKVNPAGINFYNYLIDNLLLR 150 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si--~W~r---i~P~~----------------------~~g~~n~~~~~~y~~~i~~l~~~ 150 (303)
..++-|+.|+..++|.+.+-+ +|+= ..|.. ..|.+.. +-++++++.++++
T Consensus 18 ~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA~~r 94 (326)
T cd06564 18 FLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHHHHc
Confidence 477788999999999877644 2211 11110 0034443 4579999999999
Q ss_pred CCeeEEeecCCCCchHH
Q 022079 151 GIEPFVTIYHHDFPQQL 167 (303)
Q Consensus 151 GI~pivtL~H~~~P~wl 167 (303)
||++|.-+ |+|...
T Consensus 95 gI~vIPEI---D~PGH~ 108 (326)
T cd06564 95 GVNIIPEI---DSPGHS 108 (326)
T ss_pred CCeEeccC---CCcHHH
Confidence 99998876 788654
No 177
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=38.83 E-value=97 Score=32.23 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc----hHHHH-----
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP----QQLEE----- 169 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P----~wl~~----- 169 (303)
.++|++.+.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++..-+.| ..+.+
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 4556899999999999998765432 235677788889999888887655555 22211
Q ss_pred -h----------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 170 -K----------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 170 -~----------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+ -.|...|. ...+.++.+.++++ ..-...+-|-..+.
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 0 03444444 55666666777775 22346677776653
No 178
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=38.66 E-value=98 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCC
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
....+.|..|+++|+++++.+--+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~ 83 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGA 83 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCC
Confidence 345777889999999999998544
No 179
>PTZ00445 p36-lilke protein; Provisional
Probab=38.39 E-value=50 Score=29.98 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCcccccCCcCcccccCCCCCCChh---------HHHHHHHHHHHHHHcCCeeEEeec
Q 022079 101 EDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPA---------GINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 101 eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~---------~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
.=++++++.|++.+=+.++=.-|.-... |-.++. .-.....++.+|++.||.++|.++
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3368899999999988887665542211 222221 234578899999999999998875
No 180
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=38.06 E-value=81 Score=31.26 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCC--CCCCChhHHHHHHHHHHHHHHcCCe-eEEeecCCCCchHHHHhhCCCCC
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGR--FGKVNPAGINFYNYLIDNLLLRGIE-PFVTIYHHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~--~g~~n~~~~~~y~~~i~~l~~~GI~-pivtL~H~~~P~wl~~~~ggw~~ 176 (303)
.+-++.++++|+| |+|+-=..+-++-- .|.... -+--...++.+++.|+. +-++|. |++|.
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLI-yglP~----------- 200 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLI-YGLPG----------- 200 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 4668899999999 77774333333210 044432 23457788899999887 446676 47773
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcceEEEecCCccccccccccCc
Q 022079 177 PQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLLTDMAYIRGT 219 (303)
Q Consensus 177 ~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~~~~gy~~g~ 219 (303)
++.+.|.+=.+.+.+-=-|+|..+..--||+.....-...|.
T Consensus 201 -QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~ 242 (416)
T COG0635 201 -QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK 242 (416)
T ss_pred -CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCC
Confidence 234556665666666667889999999999876554444443
No 181
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=37.50 E-value=1.4e+02 Score=30.24 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCcccccCC--cCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 100 LEDIGIMHSLGVNSYRFSIS--WPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~--W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
++-+++|+++|++.+-++++ =.++...-. ...+ .+-+.+.|+.++++||.+.+++. +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~-K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFR-KGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhc-CCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 45678999999988887773 223332211 1233 45678999999999999887764 3555
No 182
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.96 E-value=87 Score=30.17 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=47.2
Q ss_pred CcCCccc--cchHHHHHHHHHcCCCcccccCC----c-------CcccccCC-------------------CCCCChhHH
Q 022079 90 DVADDHY--HRFLEDIGIMHSLGVNSYRFSIS----W-------PRILPKGR-------------------FGKVNPAGI 137 (303)
Q Consensus 90 ~~a~d~y--~~~~eDi~l~k~lG~~~~R~si~----W-------~ri~P~~~-------------------~g~~n~~~~ 137 (303)
|+|-.++ ...++-|+.|+..++|.+.+-++ | +.+-..|. .|.+- -
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~ 85 (357)
T cd06563 9 DVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---Q 85 (357)
T ss_pred eccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---H
Confidence 4444444 34778899999999998877652 3 22211000 02233 4
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchHH
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQL 167 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl 167 (303)
+=++++++.++++||++|.-+ |+|...
T Consensus 86 ~di~eiv~yA~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 86 EEIREIVAYAAERGITVIPEI---DMPGHA 112 (357)
T ss_pred HHHHHHHHHHHHcCCEEEEec---CCchhH
Confidence 557999999999999999876 777554
No 183
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.30 E-value=46 Score=30.16 Aligned_cols=61 Identities=7% Similarity=-0.025 Sum_probs=40.6
Q ss_pred cccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 022079 95 HYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 95 ~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 157 (303)
....++.-+++++.+|.+.+++........+. . ...-....+.++++.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~-~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-P-NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-H-HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 35567778899999999999986432211111 0 1111345677888899999999976554
No 184
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=36.12 E-value=57 Score=29.82 Aligned_cols=61 Identities=8% Similarity=0.000 Sum_probs=39.9
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
-.++++-+++++++|.+.+++.-. +..+.+...+.-...++.++++++.+.++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 455788899999999999998531 1111110001112356677888899999999877754
No 185
>PRK09389 (R)-citramalate synthase; Provisional
Probab=35.93 E-value=1.1e+02 Score=31.06 Aligned_cols=108 Identities=13% Similarity=-0.030 Sum_probs=70.4
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC--CchHHHH------h
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD--FPQQLEE------K 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~--~P~wl~~------~ 170 (303)
-++|++.+.+.|++.+++.++-|.+.-....+.--++.++...+.++.+++.|+++.+++-... -|..+.+ +
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999977666332111333346788999999999999999988876532 1333321 1
Q ss_pred h----------CCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 171 Y----------GSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 171 ~----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
. -|... +..+.++.+.+.++++ -.--...-|-..+.
T Consensus 155 ~Ga~~i~l~DTvG~~~---P~~~~~lv~~l~~~~~-v~l~~H~HND~GlA 200 (488)
T PRK09389 155 AGADRICFCDTVGILT---PEKTYELFKRLSELVK-GPVSIHCHNDFGLA 200 (488)
T ss_pred CCCCEEEEecCCCCcC---HHHHHHHHHHHHhhcC-CeEEEEecCCccHH
Confidence 1 23333 4556666777766664 22345567776653
No 186
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.46 E-value=27 Score=29.58 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
....++-+++++.+|++.+++...+....+......--....+.++++.+.+.++|+++.+=.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 556888999999999999999876411111100000112356778888888999998766643
No 187
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=35.39 E-value=1.4e+02 Score=28.52 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=54.1
Q ss_pred hHHHHHHHHHcCCCcccccCCcCccccc-----CCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPK-----GRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGS 173 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~-----~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~gg 173 (303)
.+|.++.||++|++.+- +.+..-.-|+ .+ +... .+-..+.++.+++.||++..++. +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~-~~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~--------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICP-DKLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV--------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCC-CCCC---HHHHHHHHHHHHHcCCcccceEE-EecC---------
Confidence 47789999999999885 2122211111 01 2222 44557899999999998876653 2333
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcceEEEec
Q 022079 174 WLSPQMQKEFVHLAKTCFENFGDRVKYWATLN 205 (303)
Q Consensus 174 w~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~N 205 (303)
.+.+.......+.+.+-..++. +.-.+++|
T Consensus 205 -Et~ed~~~~l~~lr~l~~~~~~-~~~~iP~~ 234 (343)
T TIGR03551 205 -ETPEHWVDHLLILREIQEETGG-FTEFVPLP 234 (343)
T ss_pred -CCHHHHHHHHHHHHHhhHHhCC-eeEEEecc
Confidence 3444556666677766666653 44456665
No 188
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=35.39 E-value=1.3e+02 Score=31.98 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHH
Q 022079 139 FYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 139 ~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v 190 (303)
.+..+|+.|+++|+..=+..+|-.++.-+..+||. +.+-.++.-.+|++.|
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999888875 3334455555555544
No 189
>PLN02923 xylose isomerase
Probab=34.57 E-value=5e+02 Score=26.24 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=52.7
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHH----HHHHcCCeeEE-eecCCCCchHHHHhhCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLID----NLLLRGIEPFV-TIYHHDFPQQLEEKYGS 173 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~----~l~~~GI~piv-tL~H~~~P~wl~~~~gg 173 (303)
-+.-++.+.+||+..|-|- =..|.|++. .+ .+.-+.++++++ .+.+.||++.. |..=|..|.... |+
T Consensus 125 ~daaFEf~~kLG~~y~cFH--D~Dl~Peg~--sl-~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GA 196 (478)
T PLN02923 125 MRANFEFLKKLGVDRWCFH--DRDIAPDGK--TL-EESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GA 196 (478)
T ss_pred HHHHHHHHHHhCCCeEccC--ccccCCCCC--CH-HHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---Cc
Confidence 3444668899999887553 456778752 22 222233344444 35678999655 445588887653 88
Q ss_pred CCChHhHHHHHHHHHHH------HHHhCC
Q 022079 174 WLSPQMQKEFVHLAKTC------FENFGD 196 (303)
Q Consensus 174 w~~~~~~~~F~~ya~~v------~~~fgd 196 (303)
.+||+ ++.|+-=+..| .+++|.
T Consensus 197 aTspd-~dV~ayAaaqvk~ald~t~eLGg 224 (478)
T PLN02923 197 ATSSE-VGVYAYAAAQVKKAMEVTHYLGG 224 (478)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 88875 44444333333 555665
No 190
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.40 E-value=48 Score=31.08 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY 171 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ 171 (303)
.++-+++++++|+..+.++.- +.=+++.+++|+++++.+-+++| +|++|--..|.-+...|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 477789999999999988762 22346789999999999999977 67776656676555443
No 191
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=34.18 E-value=1.8e+02 Score=28.66 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=55.0
Q ss_pred hHHHHHHHHHc-CCCcccccC--CcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeE-EeecCCCCchHHHHhhCCC
Q 022079 99 FLEDIGIMHSL-GVNSYRFSI--SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPF-VTIYHHDFPQQLEEKYGSW 174 (303)
Q Consensus 99 ~~eDi~l~k~l-G~~~~R~si--~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pi-vtL~H~~~P~wl~~~~ggw 174 (303)
--+|++.++++ ++. .++++ .| + .. ..+.++.+.++++||++. ++...|..|.+ ++|.+
T Consensus 42 ~~~d~~~v~~L~~~~-~~v~lH~~~------d--~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSL 103 (378)
T TIGR02635 42 KIEDAALVHRLTGIC-PTVALHIPW------D--RV------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSL 103 (378)
T ss_pred HHHHHHHHHhhcCCC-CceeeccCC------c--cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCC
Confidence 45677777777 444 55555 34 1 11 236777888999999988 77766655654 34677
Q ss_pred CCh--HhHHHHHHHHHHH---HHHhCCC-cceE
Q 022079 175 LSP--QMQKEFVHLAKTC---FENFGDR-VKYW 201 (303)
Q Consensus 175 ~~~--~~~~~F~~ya~~v---~~~fgd~-V~~w 201 (303)
.|| ++.+...++.+.+ ++.+|.. |..|
T Consensus 104 t~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 104 THPDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 764 5666777777666 5677774 4444
No 192
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.16 E-value=89 Score=27.78 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 022079 103 IGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (303)
Q Consensus 103 i~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 160 (303)
++.+++.|++.+|+.++=+........+.--++.++...++++.+++.|+++.+++-+
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~ 130 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCED 130 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccc
Confidence 3445679999999998655543331113323467889999999999999999888754
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.30 E-value=1e+02 Score=27.72 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCC-CCCChhHHHHHHHHHHHHHHcCCeeEEee-cCCCCc
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF-GKVNPAGINFYNYLIDNLLLRGIEPFVTI-YHHDFP 164 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~-g~~n~~~~~~y~~~i~~l~~~GI~pivtL-~H~~~P 164 (303)
...++-+++++++|.+.++....+ . |.+.. .+......+..+++.+.+.++||+..+=. .|++.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 346777899999999998864332 1 21100 01111234556777777889999876642 354433
No 194
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=33.11 E-value=3e+02 Score=26.97 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=43.1
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec-CCCCchHHHHhhCCCCC
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-HHDFPQQLEEKYGSWLS 176 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-H~~~P~wl~~~~ggw~~ 176 (303)
...+-++.++++|++.+=+ ....+.|-+ ....+.=..++++-+.+.++||++...+. -+..|.+ +.|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCC
Confidence 4678899999999998843 333445542 22111113467788889999999665332 1222333 1266666
Q ss_pred h
Q 022079 177 P 177 (303)
Q Consensus 177 ~ 177 (303)
+
T Consensus 105 ~ 105 (382)
T TIGR02631 105 N 105 (382)
T ss_pred C
Confidence 4
No 195
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=32.89 E-value=76 Score=33.52 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCC----h-HhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 142 YLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLS----P-QMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 142 ~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~----~-~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
.++.++++++=..-+....|..|.|+. +||.. + .++....++..-+.+.+|-.++|--++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 467777777666666666799999996 44433 2 23444456666678889999999989999653
No 196
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.88 E-value=1.3e+02 Score=29.43 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=64.2
Q ss_pred hHHHHHHHHHcCCC--cccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCc---hHHHHh
Q 022079 99 FLEDIGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFP---QQLEEK 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P---~wl~~~ 170 (303)
..+-++.+++.|+- ++=++..|..-.. . -.+|++.+.-.+++++.|+++|+++++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~-f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--D-FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--T-T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--c-cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 55667777777665 4444445655222 1 35666666667999999999999988876532 222 211110
Q ss_pred ---h-----CC----------------CCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 171 ---Y-----GS----------------WLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 171 ---~-----gg----------------w~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+ .| +.+++..+.|.+..+.+.+.+| ---+|.=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 6788888888887777666654 23455889999875
No 197
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=32.46 E-value=2.2e+02 Score=26.91 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCCccccc----CCc---CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 99 FLEDIGIMHSLGVNSYRFS----ISW---PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~s----i~W---~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.++.++.||++|++.+-.. ++. .++.|. .. ..+-+.+.++.+++.||++..++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~----~~---s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK----KI---SSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC----CC---CHHHHHHHHHHHHHcCCCcccee
Confidence 4788999999999977421 111 111121 12 25667899999999999876654
No 198
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=31.83 E-value=88 Score=35.15 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEeec--CCC--------CchHHHH---------hhCC----CCChHhHHHHHHHHHHHHHH
Q 022079 137 INFYNYLIDNLLLRGIEPFVTIY--HHD--------FPQQLEE---------KYGS----WLSPQMQKEFVHLAKTCFEN 193 (303)
Q Consensus 137 ~~~y~~~i~~l~~~GI~pivtL~--H~~--------~P~wl~~---------~~gg----w~~~~~~~~F~~ya~~v~~~ 193 (303)
+.-+++||++|+++||++|+++- |.. .|.|... .++| ..++.+.+.+.+-++.-++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999853 421 1322210 0111 13466667777777777777
Q ss_pred hC
Q 022079 194 FG 195 (303)
Q Consensus 194 fg 195 (303)
|+
T Consensus 634 y~ 635 (1111)
T TIGR02102 634 FK 635 (1111)
T ss_pred cC
Confidence 74
No 199
>PRK06256 biotin synthase; Validated
Probab=31.48 E-value=78 Score=29.95 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcCCCcccccC-CcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 98 RFLEDIGIMHSLGVNSYRFSI-SWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si-~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.-++.++.||++|++.+-+++ +=.++.+.-. .. ..++.+.+.++.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~-~~---~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVV-TT---HTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcC-CC---CCHHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999888876 3223333311 11 135677889999999999865544
No 200
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=31.45 E-value=3.3e+02 Score=25.49 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCcccccCC-cCcccccCC-CCC-C----ChhHHHHHHHHHHHHHHcC---CeeEEeecCCCCchHHHH
Q 022079 100 LEDIGIMHSLGVNSYRFSIS-WPRILPKGR-FGK-V----NPAGINFYNYLIDNLLLRG---IEPFVTIYHHDFPQQLEE 169 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~-W~ri~P~~~-~g~-~----n~~~~~~y~~~i~~l~~~G---I~pivtL~H~~~P~wl~~ 169 (303)
.+.|+..-++|.|++=+.|. |+.=.|.-. .|. . +....+..+++++.+++.- -.--++|.=+|+
T Consensus 10 ~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl------ 83 (265)
T cd08576 10 LEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL------ 83 (265)
T ss_pred HHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc------
Confidence 46778888999999999995 532233210 022 1 2345677888888887763 111222211222
Q ss_pred hhCCCCChHhHHHHHHHHHHHHHHhCCC---cceEEEecCCcc
Q 022079 170 KYGSWLSPQMQKEFVHLAKTCFENFGDR---VKYWATLNEPNL 209 (303)
Q Consensus 170 ~~ggw~~~~~~~~F~~ya~~v~~~fgd~---V~~w~t~NEP~~ 209 (303)
|-++...+...+...+.|+.+.++|+.. +.-++++..|.+
T Consensus 84 K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 3355667778999999999999999965 889999999985
No 201
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.40 E-value=1.2e+02 Score=29.13 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC--CCchHHHH------hh
Q 022079 100 LEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH--DFPQQLEE------KY 171 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~--~~P~wl~~------~~ 171 (303)
.+|++.+.+.|++.+|+....++. +...+.++.+++.|+++.+++..- ..|..+.+ ++
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~ 156 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESY 156 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhC
Confidence 589999999999999988744322 235889999999999999887532 23444332 11
Q ss_pred ----------CCCCChHhHHHHHHHHHHHHHHhCCCcc-eEEEecCCcc
Q 022079 172 ----------GSWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNL 209 (303)
Q Consensus 172 ----------ggw~~~~~~~~F~~ya~~v~~~fgd~V~-~w~t~NEP~~ 209 (303)
.|... ++...++.+.+.+++++.++ .+..-|-..+
T Consensus 157 Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 202 (337)
T PRK08195 157 GAQCVYVVDSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHNNLGL 202 (337)
T ss_pred CCCEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCCCcch
Confidence 23333 55677778888888854333 4456666654
No 202
>PRK01060 endonuclease IV; Provisional
Probab=31.32 E-value=1.9e+02 Score=26.27 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCee
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEP 154 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p 154 (303)
+++-++.++++|++.+=+.+.-++.... +.++.+. .+++-+.+.++||++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~---~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR---KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC---CCCCHHH---HHHHHHHHHHcCCCC
Confidence 7888999999999999987765544332 3445433 455666678999984
No 203
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=30.72 E-value=3e+02 Score=28.01 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCC-
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWL- 175 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~- 175 (303)
.|.++-.++++++|+|.+-+.=-=. -.. +.--++..-+....++-|..+.+||++++++. |..|..+ ||-.
T Consensus 183 qR~kDYAR~laSiGINg~v~NNVNv--k~~-e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~T 254 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNVNV--KKA-ESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLKT 254 (684)
T ss_pred HHHHHHHHHHhhcCcceEEeccccc--chh-hhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcCc
Confidence 5566667889999999876532100 000 00124444577788888999999999999995 7889765 6643
Q ss_pred ----ChHhHHHHHHHHHHHHH
Q 022079 176 ----SPQMQKEFVHLAKTCFE 192 (303)
Q Consensus 176 ----~~~~~~~F~~ya~~v~~ 192 (303)
.+.+...+.+=|+.+.+
T Consensus 255 ADPLDe~VrawWkeka~~IY~ 275 (684)
T COG3661 255 ADPLDEAVRAWWKEKADEIYK 275 (684)
T ss_pred CCcccHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 204
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.64 E-value=4.1e+02 Score=24.02 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.3
Q ss_pred chHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 022079 98 RFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (303)
Q Consensus 98 ~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~piv 156 (303)
.+++-++.++++|++.+=+++.=....+.+ ..++. ...+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~--~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR--LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc--cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 478999999999999987754211111111 11232 3467788888999999753
No 205
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.52 E-value=51 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCee
Q 022079 138 NFYNYLIDNLLLRGIEP 154 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~p 154 (303)
+.-.++++.+++.||+|
T Consensus 18 ~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 18 DAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34577888888899987
No 206
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=30.05 E-value=81 Score=25.14 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCcccccCC-cCcc-cccCCCCCCChhHHHHHHHHHHHHHHcCCee
Q 022079 100 LEDIGIMHSLGVNSYRFSIS-WPRI-LPKGRFGKVNPAGINFYNYLIDNLLLRGIEP 154 (303)
Q Consensus 100 ~eDi~l~k~lG~~~~R~si~-W~ri-~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~p 154 (303)
++.++.++++|++.++++++ -+.- ..... + ....++..-+.++.++++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~-~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII-N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH-S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh-c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999993 3331 11100 1 1134677889999999999985
No 207
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=29.46 E-value=40 Score=24.49 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=30.3
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC
Q 022079 121 PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH 161 (303)
Q Consensus 121 ~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~ 161 (303)
+++.|.. +.=..++++...+++..+.++|| +.+.|++-
T Consensus 19 s~l~p~~--~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE--GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc--ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5677873 54456789999999999999999 88877653
No 208
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.44 E-value=1.7e+02 Score=30.60 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=57.6
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCch----HHHH-----
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ----QLEE----- 169 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~----wl~~----- 169 (303)
.++|++++++.|++.+|+..+-+.+ .-....++.++++|..+.+++..-+.|. .+.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 5667889999999999988765433 2345666777888887776664323341 1111
Q ss_pred -h----------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 170 -K----------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 170 -~----------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+ -.|-..| ....+.++.+.++++ ..-...+-|-..+.
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HHcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 0 0344444 455667777777775 33355677766653
No 209
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=29.25 E-value=44 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcceEEEecCCcc
Q 022079 185 HLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 185 ~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
+..+.+.+. ...+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 210
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=28.79 E-value=71 Score=32.45 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=43.8
Q ss_pred CCcCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 022079 89 GDVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 89 ~~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 157 (303)
.-.|+|-+..+.+-|+.+++.|++++ |+|- |.++. +++|+.+-++||.-+.|
T Consensus 457 av~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG---GSirD------~eVI~aAde~giaMvfT 508 (515)
T COG0138 457 AVLASDAFFPFPDGIDAAAKAGIKAI--------IQPG---GSIRD------QEVIAAADEHGIAMVFT 508 (515)
T ss_pred cEEeecccCCCcchHHHHHHcCCeEE--------ECCC---Ccccc------HHHHHHHHhcCcEEEEc
Confidence 34688999999999999999999987 7887 55543 67899999999988876
No 211
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.26 E-value=84 Score=28.48 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcc-cccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRI-LPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri-~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
....+.-++.++++|++.+|+.- .... .|.. ...-...++.++++.+.+.++||+..+=.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~-~~~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAG-YDVYYEEKS--EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECC-ccccccccc--HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 34567778999999999999741 1111 1110 111123456788888999999998777443
No 212
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.14 E-value=1.7e+02 Score=27.14 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred CccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHH
Q 022079 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLE 168 (303)
Q Consensus 93 ~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~ 168 (303)
.+..+...+-.+.+|++|+..+|-+..=+|--|.+..| + +.+.++.+-+.+++.||..+.+.++-..+..+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-L---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-c---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 34456677777889999999999987546665543212 2 234566677778999999999998765555554
No 213
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=28.11 E-value=70 Score=31.52 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=42.8
Q ss_pred CcCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 022079 90 DVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 90 ~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 157 (303)
-.|+|-+..+++-|+.+++.|++++ |+|- |.++. +++|+.|.++||.-+.|
T Consensus 333 vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPG---GSiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 333 ALGSDAFFPFGDNIERAAKSGVKYI--------AQPG---GSIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred EEEecccCCCCchHHHHHHcCCEEE--------ECCC---CCCCc------HHHHHHHHHhCCEEEEC
Confidence 3588999999999999999999986 7886 55543 67899999999987776
No 214
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=27.90 E-value=1.5e+02 Score=24.30 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred hHHHHHHHHHcCCCcccccCCc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec
Q 022079 99 FLEDIGIMHSLGVNSYRFSISW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~ 159 (303)
-+++++.|+++|+..+.+|++- ..-.-... . -....++.+-+.|+.+++.|+.+.+.+.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKI-R-GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHH-h-cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 4789999999999999999953 22211100 0 0112366778888888988888777663
No 215
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.73 E-value=2.5e+02 Score=25.47 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCc
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPR 122 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~r 122 (303)
..+++.+++++++|++.+=+.+....
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~ 35 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPR 35 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 55777788888888887766665443
No 216
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=27.64 E-value=2.7e+02 Score=26.16 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCcccccCC-cCc-ccccCCCCCCChhHHHHHHHHHHHHHHcCC
Q 022079 99 FLEDIGIMHSLGVNSYRFSIS-WPR-ILPKGRFGKVNPAGINFYNYLIDNLLLRGI 152 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~-W~r-i~P~~~~g~~n~~~~~~y~~~i~~l~~~GI 152 (303)
..+.++.+++.|++.+.+|++ ... ..-.-. +.. .++...+.|+.+++.|+
T Consensus 107 l~~~~~~L~~agl~~i~ISlds~~~e~~~~i~-~~~---~~~~vl~~i~~~~~~g~ 158 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSLDSLDPERFKAIT-GRD---RLDQVLAGIDAALAAGL 158 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCHHHhccCC-CCC---CHHHHHHHHHHHHHCCC
Confidence 456788899999998888883 321 011101 221 36677788888899998
No 217
>PTZ00445 p36-lilke protein; Provisional
Probab=27.61 E-value=1.1e+02 Score=27.88 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCeeEEeecCCCCchHHHH-hhCCCCChH---------hHHHHHHHHHHHHH
Q 022079 137 INFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEE-KYGSWLSPQ---------MQKEFVHLAKTCFE 192 (303)
Q Consensus 137 ~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~-~~ggw~~~~---------~~~~F~~ya~~v~~ 192 (303)
-+.-+.+++.|++.||+.+++= +|.- +.. .-|||.++. ..+.|..+...+-+
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3456889999999999999863 3332 222 138998886 45567776665543
No 218
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.35 E-value=4.7e+02 Score=23.67 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~piv 156 (303)
..+.+-+++++++|++.+=+++.-....+.. -.++ -....++-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~--~~~~---~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR--LDWS---REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc--cCCC---HHHHHHHHHHHHHcCCCcee
Confidence 3488999999999999998876543222221 1122 24567788889999998753
No 219
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=27.33 E-value=60 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=22.9
Q ss_pred HHHHHHHH-HcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHH
Q 022079 141 NYLIDNLL-LRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL 186 (303)
Q Consensus 141 ~~~i~~l~-~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~y 186 (303)
+++++.|. ..+|+|.+|.. .|-.-+ .++++.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~Le------~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKLE------KENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHHH------HHCHHHHHHh
Confidence 57788884 66999999873 553322 3455566665
No 220
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.70 E-value=93 Score=24.42 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=13.0
Q ss_pred CccccchhhHHHHHHHHHHHHHHhhhh
Q 022079 1 MISKFHHFSAFLFFLVLLQLWPVLSLA 27 (303)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (303)
|-||. |-+|.++|+.+.|+++--.|
T Consensus 1 MaSK~--~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKA--FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhH--HHHHHHHHHHHHHHHhhhhh
Confidence 44554 55555555555555544333
No 221
>PF14981 FAM165: FAM165 family
Probab=26.02 E-value=78 Score=21.67 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhc
Q 022079 5 FHHFSAFLFFLVLLQLWPVLSLAK 28 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (303)
.-|+|+++.||..-.|+-||..|+
T Consensus 3 L~~vPlLlYILaaKtlilClaFAg 26 (51)
T PF14981_consen 3 LDNVPLLLYILAAKTLILCLAFAG 26 (51)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhh
Confidence 469999999998888888888776
No 222
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.89 E-value=2.7e+02 Score=25.41 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=52.0
Q ss_pred hHHHHHHHHHcCCC--cccccCCcCcccccCCCC--CCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCC
Q 022079 99 FLEDIGIMHSLGVN--SYRFSISWPRILPKGRFG--KVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW 174 (303)
Q Consensus 99 ~~eDi~l~k~lG~~--~~R~si~W~ri~P~~~~g--~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw 174 (303)
..+-++.+++.|+. ++=+++.|..-. +. - .+|.+.+.-.+++|+.|++.|++.++.+. |.
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~-f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~--------- 89 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--GD-FTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY--------- 89 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--ce-eeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh---------
Confidence 34455555554443 555555554321 11 2 34555555568899999999999999773 31
Q ss_pred CChHhHHHHHHHHHHHHHHhCCCcc-eEEEecCCccc
Q 022079 175 LSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPNLL 210 (303)
Q Consensus 175 ~~~~~~~~F~~ya~~v~~~fgd~V~-~w~t~NEP~~~ 210 (303)
+.+.|.+..+.+. +..-|+ .|+=+|||...
T Consensus 90 ----v~~w~~~~~~~~~--~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 ----IREWWAEVVKKLL--VSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred ----HHHHHHHHHHHhh--ccCCCCEEeccCCCCCcC
Confidence 2444554444332 223354 55789999754
No 223
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=25.85 E-value=67 Score=27.22 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=36.9
Q ss_pred cCCccccchHHHHHH-HHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEE
Q 022079 91 VADDHYHRFLEDIGI-MHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFV 156 (303)
Q Consensus 91 ~a~d~y~~~~eDi~l-~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~piv 156 (303)
.+|......++|++. ++++|++.+++.+.|+----. +-+.++ --+.|+++||.|=.
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~---d~it~~-------gr~~l~~~giapp~ 92 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT---DWITED-------AREKLREYGIAPPA 92 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh---HHCCHH-------HHHHHHhcCccCCC
Confidence 356667778888754 667799988888877432221 334433 34678999998743
No 224
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.82 E-value=1e+02 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCC
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDR 197 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~ 197 (303)
.--++..+++.|++.+++. |=+.|-.+| |.. .+..|.++.+.++-+++|.
T Consensus 107 ~~~~~r~~~~~g~~v~vN~---DGlEWkR~K---W~~--~~k~~lk~~E~~avk~ad~ 156 (185)
T PF09314_consen 107 FLPFLRKLRKKGGKVVVNM---DGLEWKRAK---WGR--PAKKYLKFSEKLAVKYADR 156 (185)
T ss_pred HHHHHHhhhhcCCcEEECC---Ccchhhhhh---cCH--HHHHHHHHHHHHHHHhCCE
Confidence 3445556666777777766 456676555 432 4788999999999999986
No 225
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=25.71 E-value=98 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=23.2
Q ss_pred HHHHHHHH-HcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHH
Q 022079 141 NYLIDNLL-LRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHL 186 (303)
Q Consensus 141 ~~~i~~l~-~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~y 186 (303)
+++++.|. .+||+|.+|. ..|-.-. +++.+.|..|
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~Le------keN~eFF~aY 54 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLLE------KENADFFRCY 54 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHHH------HHHHHHHHHH
Confidence 56776665 5899999986 3564322 4566677766
No 226
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=25.70 E-value=1.9e+02 Score=26.18 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCC---CChHhHHHHHHHHHHHHHHhCCCcceE
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSW---LSPQMQKEFVHLAKTCFENFGDRVKYW 201 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw---~~~~~~~~F~~ya~~v~~~fgd~V~~w 201 (303)
...+++++.+.+.|++-+.-.-|..+|..... ..| .+.+..+.+.+-++.+-++|+++++..
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~ 79 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKIL 79 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 34689999999999999999999765421110 112 112334445555566678898776554
No 227
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.67 E-value=90 Score=28.41 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhH----HHHHHHHHHHHHHcCCeeEEee
Q 022079 96 YHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAG----INFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 96 y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~----~~~y~~~i~~l~~~GI~pivtL 158 (303)
..++++-+++++++|++.+++.- + -.+. +.-+.+. .+..+++.+.+.++||...+=.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~-~--~~~~---~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAG-Y--DVYY---EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-c--cccc---cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 45678889999999999999742 1 1111 1112222 4566788888899999776644
No 228
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=25.54 E-value=2.1e+02 Score=29.29 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee----cCCCCchHHHHh----
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI----YHHDFPQQLEEK---- 170 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL----~H~~~P~wl~~~---- 170 (303)
-+.|++...+.|++.+|+....+.+ .-....++.+++.|.....++ .+-..|..+.+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l 164 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRL 164 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 4457899999999999998765443 233445555555555543332 112223222110
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhC-CCcceEEEecCCccc
Q 022079 171 ------------YGSWLSPQMQKEFVHLAKTCFENFG-DRVKYWATLNEPNLL 210 (303)
Q Consensus 171 ------------~ggw~~~~~~~~F~~ya~~v~~~fg-d~V~~w~t~NEP~~~ 210 (303)
-.|-..| ....+.++.+.++++ +..-...+-|-..+.
T Consensus 165 ~~~Gad~I~IkDtaGll~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 165 LDMGADSICIKDMAALLKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HHcCCCEEEeCCCccCCCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 1345554 456677777778886 333445677776653
No 229
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.27 E-value=2.4e+02 Score=29.57 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=53.7
Q ss_pred ccchHH-----HHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchH----
Q 022079 96 YHRFLE-----DIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQ---- 166 (303)
Q Consensus 96 y~~~~e-----Di~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~w---- 166 (303)
|..|.+ .++++++.|++.+|+.-+... ++-....|+.+++.|.....+++--..|..
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~ 155 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDN 155 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHH
Confidence 555554 679999999999997643311 233444566666666666655432122211
Q ss_pred HHH------h----------hCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCccc
Q 022079 167 LEE------K----------YGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNLL 210 (303)
Q Consensus 167 l~~------~----------~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~~ 210 (303)
+.+ + -.|-.+|. ...+.++.+-++++ ..-...+-|-..+.
T Consensus 156 ~~~~ak~l~~~Gad~I~IkDtaG~l~P~---~v~~lv~alk~~~~-ipi~~H~Hnt~Gla 211 (596)
T PRK14042 156 FLELGKKLAEMGCDSIAIKDMAGLLTPT---VTVELYAGLKQATG-LPVHLHSHSTSGLA 211 (596)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCHH---HHHHHHHHHHhhcC-CEEEEEeCCCCCcH
Confidence 110 0 13555544 55666666767774 33345676766653
No 230
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.90 E-value=2.5e+02 Score=26.11 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCeeEEeecCC-CC-c---hH--HHHhhC-----------CCCChHhHHHHHHHHHHHHHH
Q 022079 132 VNPAGINFYNYLIDNLLLRGIEPFVTIYHH-DF-P---QQ--LEEKYG-----------SWLSPQMQKEFVHLAKTCFEN 193 (303)
Q Consensus 132 ~n~~~~~~y~~~i~~l~~~GI~pivtL~H~-~~-P---~w--l~~~~g-----------gw~~~~~~~~F~~ya~~v~~~ 193 (303)
+|++.+--.+++|+.|++.|+++++.++=. .. | .. +..+.+ .++||+..+.|.+-.......
T Consensus 68 ~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 68 WNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred EChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 444444556889999999999999877522 11 1 11 111111 256777665554333332323
Q ss_pred hCCCcc-eEEEecCCccc
Q 022079 194 FGDRVK-YWATLNEPNLL 210 (303)
Q Consensus 194 fgd~V~-~w~t~NEP~~~ 210 (303)
. -|+ .|.=+|||...
T Consensus 148 ~--Gidg~W~D~~E~~~~ 163 (292)
T cd06595 148 Q--GVDFWWLDWQQGNRT 163 (292)
T ss_pred c--CCcEEEecCCCCccc
Confidence 3 355 56888998654
No 231
>PRK08508 biotin synthase; Provisional
Probab=24.60 E-value=1.6e+02 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCcccccCCc-CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 99 FLEDIGIMHSLGVNSYRFSISW-PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W-~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
.+|.++.||++|++.+-.+++= +++.|.-. ..- .++..-+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~-~~~---~~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKIC-TTH---TWEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCC-CCC---CHHHHHHHHHHHHHcCCeeccee
Confidence 5899999999999999987732 34565521 112 25556678888999999765544
No 232
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.57 E-value=4e+02 Score=28.21 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=60.5
Q ss_pred HHHHHHcCCC--cccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC---CCchHHHHh---h---
Q 022079 103 IGIMHSLGVN--SYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---DFPQQLEEK---Y--- 171 (303)
Q Consensus 103 i~l~k~lG~~--~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~~---~--- 171 (303)
++.+++.|+- ++-+++.|.+-.--+. -.+|++.+---++||+.|++.|+++++.+.-+ +.|.+-+.. |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~-f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCD-FEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceee-eEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 4666766664 6667777754221111 23444433335689999999999998876532 222221110 0
Q ss_pred -------------C-----CCCChHhHHHHHHHHHHHHHHhCCCcc-eEEEecCCc
Q 022079 172 -------------G-----SWLSPQMQKEFVHLAKTCFENFGDRVK-YWATLNEPN 208 (303)
Q Consensus 172 -------------g-----gw~~~~~~~~F~~ya~~v~~~fgd~V~-~w~t~NEP~ 208 (303)
| .++||+..+.|.+..+.+.+ .| |+ +|.=+||+.
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~~ 420 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGERI 420 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCcee
Confidence 1 16789999999888877554 33 54 456678863
No 233
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=24.52 E-value=2e+02 Score=27.54 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHcCCCcccccC--CcCcccc-cCC-----CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC------
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSI--SWPRILP-KGR-----FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD------ 162 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si--~W~ri~P-~~~-----~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~------ 162 (303)
.+.++=++++++.|+|++=+.+ ++-.|-= +.. .|... ..+.-.+++++.|+++||-||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~-~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK-PYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc-ccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 4578889999999999999888 4544422 110 02111 1124468899999999999998766542
Q ss_pred -CchHHHHhhC----------CCCCh---HhHHHHHHHHHHHHH
Q 022079 163 -FPQQLEEKYG----------SWLSP---QMQKEFVHLAKTCFE 192 (303)
Q Consensus 163 -~P~wl~~~~g----------gw~~~---~~~~~F~~ya~~v~~ 192 (303)
.|.|...+-+ .|.+| ++.+.-.+-|+.+++
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~ 135 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK 135 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH
Confidence 2544431111 27654 566666666666654
No 234
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=23.33 E-value=1.8e+02 Score=31.43 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCCCcccccCCcCcccccCCC-------CCCChh--HHHHHHHHHHHHHHcCCeeEEee
Q 022079 99 FLEDIGIMHSLGVNSYRFSISWPRILPKGRF-------GKVNPA--GINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~-------g~~n~~--~~~~y~~~i~~l~~~GI~pivtL 158 (303)
-++-++.+++|||.++=.|=-|.-.==+ .. .++|++ |.+-+.+++.++++.||-.|+++
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~pGS-tHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTARPGS-THGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcCCCC-CCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 4566788999999998887655443111 10 134443 67789999999999999999998
No 235
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=23.31 E-value=1.2e+02 Score=28.63 Aligned_cols=59 Identities=19% Similarity=0.069 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHcCCCcccccCC----cCcccccCC----CC---------CCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSIS----WPRILPKGR----FG---------KVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~----W~ri~P~~~----~g---------~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
...++=|+.|+..++|.+.+-++ |+--.+.-+ .| .+. -+=++++|+.++++||++|.-+
T Consensus 18 ~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 18 DTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCC---HHHHHHHHHHHHHcCCceeeec
Confidence 34788899999999997776553 321111100 02 233 2457999999999999999877
No 236
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=23.27 E-value=1.6e+02 Score=25.06 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCeeE--EeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCC
Q 022079 138 NFYNYLIDNLLLRGIEPF--VTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEP 207 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pi--vtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP 207 (303)
+-|+++++.|+..++..- ..+.+--+|..+.++ .=.-|=...+.|..|-+++++.++.+++.-.+..|.
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e~ 86 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISES 86 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeecC
Confidence 569999999999986432 223344556655433 111222347889999999999999988888888873
No 237
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.01 E-value=4.5e+02 Score=24.17 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 130 g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
|++| ++-+++.++.+.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-+++++...-....+.
T Consensus 14 g~iD---~~~~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~ 79 (285)
T TIGR00674 14 GSVD---FAALEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNAT 79 (285)
T ss_pred CCcC---HHHHHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccH
Confidence 8899 5567999999999999999876431 111 1223566777778888888888888876655543
No 238
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.94 E-value=3e+02 Score=26.00 Aligned_cols=67 Identities=25% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCeeEEeecCC---CCchHHHH---h-----------h--------C---CCCChHhHHHHHHHHHHHH
Q 022079 140 YNYLIDNLLLRGIEPFVTIYHH---DFPQQLEE---K-----------Y--------G---SWLSPQMQKEFVHLAKTCF 191 (303)
Q Consensus 140 y~~~i~~l~~~GI~pivtL~H~---~~P~wl~~---~-----------~--------g---gw~~~~~~~~F~~ya~~v~ 191 (303)
..++|+.|++.|+++++.+.-+ +.+....+ + | + .++||+.++.|.+-.+...
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 73 LDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 4688999999999988877533 22332111 0 0 0 1567888888877777664
Q ss_pred HHhCCCcce-EEEecCCc
Q 022079 192 ENFGDRVKY-WATLNEPN 208 (303)
Q Consensus 192 ~~fgd~V~~-w~t~NEP~ 208 (303)
... -|+. |.=+||+.
T Consensus 153 ~~~--Gvdg~w~D~~E~~ 168 (317)
T cd06594 153 LDL--GLSGWMADFGEYL 168 (317)
T ss_pred hhc--CCcEEEecCCCCC
Confidence 444 3554 57899964
No 239
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.90 E-value=4.7e+02 Score=24.68 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh
Q 022079 92 ADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY 171 (303)
Q Consensus 92 a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ 171 (303)
+...++...+--+.+|+.|.+.+|-+.-=+|--|-.. ....++++.+.. ....++|+-++.-.
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsF-QGlge~gL~~l~---~a~~~~Gl~vvtEv------------- 116 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSF-QGLGEEGLKLLK---RAADETGLPVVTEV------------- 116 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccc-cccCHHHHHHHH---HHHHHcCCeeEEEe-------------
Confidence 5567888888889999999999999987777766533 335555554444 34556777544433
Q ss_pred CCCCChHhHHHHHHHHHHH
Q 022079 172 GSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 172 ggw~~~~~~~~F~~ya~~v 190 (303)
.++..++.+.+|+..+
T Consensus 117 ---m~~~~~e~~~~y~Dil 132 (286)
T COG2876 117 ---MDVRDVEAAAEYADIL 132 (286)
T ss_pred ---cCHHHHHHHHhhhhHH
Confidence 2455677788887765
No 240
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=22.53 E-value=1.3e+02 Score=30.04 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHcC---CeeEEeecCCCCchHHHHh----hCC-C---CChHhHHHHHHHHHHHHHHhCC-CcceE-
Q 022079 135 AGINFYNYLIDNLLLRG---IEPFVTIYHHDFPQQLEEK----YGS-W---LSPQMQKEFVHLAKTCFENFGD-RVKYW- 201 (303)
Q Consensus 135 ~~~~~y~~~i~~l~~~G---I~pivtL~H~~~P~wl~~~----~gg-w---~~~~~~~~F~~ya~~v~~~fgd-~V~~w- 201 (303)
|.+++=--+|..+.++. ++.+.+- |.-|-|+-.. .+| - .+...-+.+++|--.+++.|+. .+.+|
T Consensus 174 ED~q~KIP~ik~A~~~~~~~lklfAsP--WsaPgWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWg 251 (518)
T KOG2566|consen 174 EDLKLKIPFIKKAQKYNQGNLKLFASP--WSAPGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWG 251 (518)
T ss_pred hhheeecHHHHHHHHhcCCCceEEecC--CCCCceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEe
Confidence 44555556676666543 5555554 7899998532 012 1 2234566777777777888876 49999
Q ss_pred -EEecCCcccccccc
Q 022079 202 -ATLNEPNLLTDMAY 215 (303)
Q Consensus 202 -~t~NEP~~~~~~gy 215 (303)
.+=|||...+..+|
T Consensus 252 lt~qNEPstG~d~~~ 266 (518)
T KOG2566|consen 252 LTTQNEPSTGSDKKW 266 (518)
T ss_pred ecccCCCCcCcccCC
Confidence 58999998766554
No 241
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=22.20 E-value=1.3e+02 Score=28.52 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=32.6
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 022079 122 RILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (303)
Q Consensus 122 ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~ 162 (303)
+..|... +.++++.+..++++.+.++++|-+.++-|+|.+
T Consensus 62 ~~~~~~~-~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 62 RITPGDL-GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred CCCCCce-eecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 3444433 567888999999999999999999999999953
No 242
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.09 E-value=1.5e+02 Score=23.73 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHc-CCeeEEeec
Q 022079 97 HRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLR-GIEPFVTIY 159 (303)
Q Consensus 97 ~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~-GI~pivtL~ 159 (303)
.+...-++.|++.|++++.||--=..=-|. +. --+++++.+.++++ |++++...|
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~---~~-----CP~~~~~~~~I~~~~gi~VV~GTH 107 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPH---GP-----CPHIDEIKKIIEEKFGIEVVEGTH 107 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCC---CC-----CCCHHHHHHHHHHHhCCCEeeecC
Confidence 346667888999999998887532221122 11 22477777777777 998877653
No 243
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=22.04 E-value=9.9e+02 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=33.5
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHc-CCeeEEeecCC
Q 022079 121 PRILPKGRFGKVNPAGINFYNYLIDNLLLR-GIEPFVTIYHH 161 (303)
Q Consensus 121 ~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~-GI~pivtL~H~ 161 (303)
.++.|... |-++.+.++.++++++.++++ |-++++-|.|-
T Consensus 459 g~~~~~~~-~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~ 499 (765)
T PRK08255 459 GRITPGCP-GLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHS 499 (765)
T ss_pred cCCCCCCC-ccCCHHHHHHHHHHHHHHHhcCCceEEEEccCC
Confidence 45555533 778999999999999999999 69999999994
No 244
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=21.92 E-value=97 Score=31.71 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=42.4
Q ss_pred CcCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 022079 90 DVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 90 ~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 157 (303)
-.|+|-+..+.+-++.+++.|++++ |+|- |.+.. +++|+.+.++||..+.|
T Consensus 454 vlASDAFFPF~D~ve~aa~aGi~aI--------iQPG---GSiRD------~evI~aa~e~giaMvfT 504 (511)
T TIGR00355 454 SLASDAFFPFRDGVEEAAAAGITCI--------IQPG---GSMRD------EDSIWAADEHGIVMVFT 504 (511)
T ss_pred EEEeccccCCCccHHHHHHcCCEEE--------EcCC---CCCCc------HHHHHHHHHhCCEEEEC
Confidence 3588989999999999999999986 7886 45543 57899999999988776
No 245
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.90 E-value=99 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHcCCeeEEeecCCCCch
Q 022079 134 PAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQ 165 (303)
Q Consensus 134 ~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~ 165 (303)
.+|++-+.++|+.+++.|+.+|+++=..|+|.
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~n 100 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKRGDIGS 100 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeecCChHH
Confidence 35688899999999999999999999889884
No 246
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.79 E-value=7e+02 Score=25.98 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=55.6
Q ss_pred cchHHHHHHHH---HcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeec--------------
Q 022079 97 HRFLEDIGIMH---SLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIY-------------- 159 (303)
Q Consensus 97 ~~~~eDi~l~k---~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~-------------- 159 (303)
+.++.|++.|+ ++|.+.+=.. =.+| .+.|.++++.++..++.++.++.
T Consensus 475 ~~~~~d~~~L~~Ki~aGAdf~iTQ------------~~fd---~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~ 539 (612)
T PRK08645 475 RNLDKEVKRLEKKIEAGADYFITQ------------PVYD---EELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNE 539 (612)
T ss_pred CChHHHHHHHHHHHHcCCCEEEec------------ccCC---HHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhC
Confidence 45778877666 5677665322 2355 56788888888877777666664
Q ss_pred --CCCCchHHHHhhCCCCCh-HhHHHHHHHHHHHHHHhCCCcc
Q 022079 160 --HHDFPQQLEEKYGSWLSP-QMQKEFVHLAKTCFENFGDRVK 199 (303)
Q Consensus 160 --H~~~P~wl~~~~ggw~~~-~~~~~F~~ya~~v~~~fgd~V~ 199 (303)
+-.+|.|+.+++....++ +..+.-.+||..+.+...+.|+
T Consensus 540 ~~Gv~vP~~l~~~l~~~~d~~~~~~~gv~~a~e~i~~l~~~v~ 582 (612)
T PRK08645 540 VPGITLPEEIRERMRAVEDKEEAREEGVAIARELIDAAREYFN 582 (612)
T ss_pred CCCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhCC
Confidence 346688877765444433 3455566777777766544333
No 247
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.66 E-value=1.6e+02 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCC
Q 022079 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHD 162 (303)
Q Consensus 130 g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~ 162 (303)
+.++.+.+..++++.+.++++|-+.++-|+|.+
T Consensus 69 ~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 69 GIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCc
Confidence 567888899999999999999999999999954
No 248
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.55 E-value=4.8e+02 Score=23.81 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCCcceEEEecCCcc
Q 022079 130 GKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDRVKYWATLNEPNL 209 (303)
Q Consensus 130 g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~V~~w~t~NEP~~ 209 (303)
|.+|. +-+++.++.+.+.|+.-++.+-+- |-. ..-+.++..+..+.+.+.-+++++...-...++.
T Consensus 16 g~iD~---~~~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~ 81 (284)
T cd00950 16 GSVDF---DALERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNT 81 (284)
T ss_pred CCcCH---HHHHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccH
Confidence 88994 557899999999999998876431 111 1224667777788888888888887776655543
No 249
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.37 E-value=2.7e+02 Score=27.87 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=48.3
Q ss_pred CCcCCccc--cchHHHHHHHHHcCCCcccccC----CcCcc---ccc-------------------------------CC
Q 022079 89 GDVADDHY--HRFLEDIGIMHSLGVNSYRFSI----SWPRI---LPK-------------------------------GR 128 (303)
Q Consensus 89 ~~~a~d~y--~~~~eDi~l~k~lG~~~~R~si----~W~ri---~P~-------------------------------~~ 128 (303)
-|+|-.++ +..++=|+.|+..++|.+.+-+ +|+-- .|+ ..
T Consensus 12 LDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (445)
T cd06569 12 LDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGS 91 (445)
T ss_pred eeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccC
Confidence 34555554 3477788999999999887766 34211 111 01
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHH
Q 022079 129 FGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQL 167 (303)
Q Consensus 129 ~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl 167 (303)
|.+.. +=++++|+.++++||++|.-+ |+|...
T Consensus 92 -g~YT~---~di~eiv~yA~~rgI~VIPEI---D~PGH~ 123 (445)
T cd06569 92 -GYYSR---ADYIEILKYAKARHIEVIPEI---DMPGHA 123 (445)
T ss_pred -CccCH---HHHHHHHHHHHHcCCEEEEcc---CCchhH
Confidence 33443 346999999999999999876 777654
No 250
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=21.36 E-value=3.3e+02 Score=23.69 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=42.3
Q ss_pred CcCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCC----CCCCh---hHHHH---HHHHHHHHHHcCCeeEEeec
Q 022079 90 DVADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRF----GKVNP---AGINF---YNYLIDNLLLRGIEPFVTIY 159 (303)
Q Consensus 90 ~~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~----g~~n~---~~~~~---y~~~i~~l~~~GI~pivtL~ 159 (303)
|.|=.|| |+|.++.++++|++...+|-.=....|+-+. |..+. +.+.. ..+.|.+..++|. |++..+
T Consensus 6 d~aF~f~--y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~-pilgIC 82 (198)
T cd03130 6 DEAFNFY--YPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG-PIYAEC 82 (198)
T ss_pred cCccccc--cHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC-CEEEEc
Confidence 3444566 9999999999999888776520111121000 32322 23322 3444555556774 889888
Q ss_pred CCCCchHHHH
Q 022079 160 HHDFPQQLEE 169 (303)
Q Consensus 160 H~~~P~wl~~ 169 (303)
+ =++.|.+
T Consensus 83 g--G~qlL~~ 90 (198)
T cd03130 83 G--GLMYLGE 90 (198)
T ss_pred c--cHHHHHH
Confidence 5 3555543
No 251
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.31 E-value=1.5e+02 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred cCCccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEe
Q 022079 91 VADDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVT 157 (303)
Q Consensus 91 ~a~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivt 157 (303)
++.|.+-.-...+..+..+.++.++++.++-+-... |.......+.+++.++..|++++++
T Consensus 149 ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~------~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 149 IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT------DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc------ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 455555555566777888888888887766443332 1223467889999999999998886
No 252
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=21.25 E-value=2.8e+02 Score=28.96 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHH
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCF 191 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~ 191 (303)
+....+++.|+++|+..=+..+|-.++.-+..+||. +.+-.++.-.+|++.|-
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~-tpegmVeSAle~~~i~e 197 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGD-TIEGMVYSALEYIEVCE 197 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999989873 33445666666666553
No 253
>PRK08445 hypothetical protein; Provisional
Probab=21.04 E-value=5.4e+02 Score=24.71 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=50.3
Q ss_pred hHHHHHHHHHcCCCccc-ccCC--c----CcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhh
Q 022079 99 FLEDIGIMHSLGVNSYR-FSIS--W----PRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKY 171 (303)
Q Consensus 99 ~~eDi~l~k~lG~~~~R-~si~--W----~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ 171 (303)
.+|.++.+|++|++.+= .+++ = .++.|.. .. .+-+.+.++.+++.||+.-.+.. ++++
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~----~t---~~~~i~~i~~a~~~Gi~~~sg~i-~G~~------- 207 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKK----LD---SDRWLEVHRQAHLIGMKSTATMM-FGTV------- 207 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCC----CC---HHHHHHHHHHHHHcCCeeeeEEE-ecCC-------
Confidence 48999999999999774 4443 1 1233442 23 33457999999999999999864 2322
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCC
Q 022079 172 GSWLSPQMQKEFVHLAKTCFENFGD 196 (303)
Q Consensus 172 ggw~~~~~~~~F~~ya~~v~~~fgd 196 (303)
.+++-........+.+-.+.+.
T Consensus 208 ---Et~edr~~~l~~lreLq~~~~g 229 (348)
T PRK08445 208 ---ENDEEIIEHWERIRDLQDETGG 229 (348)
T ss_pred ---CCHHHHHHHHHHHHHHHHHhCC
Confidence 3333344445555555555543
No 254
>PRK14567 triosephosphate isomerase; Provisional
Probab=21.02 E-value=6.7e+02 Score=23.20 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCC----------------------
Q 022079 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHH---------------------- 161 (303)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~---------------------- 161 (303)
.++|++|++.+=++=|=.|..= ++-| +...+-+..+.++||+|+++.=--
T Consensus 79 ~mLkd~G~~yviiGHSERR~~f----~Etd----~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~ 150 (253)
T PRK14567 79 RMLEDIGCDYLLIGHSERRSLF----AESD----EDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILE 150 (253)
T ss_pred HHHHHcCCCEEEECcccccCcc----CCCH----HHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHc
Confidence 6899999998887776444321 2222 346677788899999999986310
Q ss_pred --C--------C---chHHHHhhCCCCChHhHHHHHHHHHHHHHHhCCC
Q 022079 162 --D--------F---PQQLEEKYGSWLSPQMQKEFVHLAKTCFENFGDR 197 (303)
Q Consensus 162 --~--------~---P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fgd~ 197 (303)
+ + |.|.--. |--.+++.+++...+.|.....+++.
T Consensus 151 ~i~~~~~~~ivIAYEPvWAIGT-G~~as~e~i~~~~~~IR~~l~~~~~~ 198 (253)
T PRK14567 151 NLSVEQLAKVVIAYEPVWAIGT-GVVASLEQIQETHQFIRSLLAKVDER 198 (253)
T ss_pred cCCHHHhCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 0 0 5554321 22456788888888888877667554
No 255
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.97 E-value=3.1e+02 Score=28.72 Aligned_cols=52 Identities=10% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHH
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTC 190 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v 190 (303)
+....+++.|+++|+..=+..+|-.++.-+..+||. +.+-.++.-.+|++.|
T Consensus 141 e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~-tpe~mVeSAle~~~i~ 192 (611)
T PRK02048 141 DRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGD-TPEGMVESCMEFLRIC 192 (611)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999988863 3344566666666655
No 256
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.78 E-value=1.2e+02 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHc-CCeeEEeecCC
Q 022079 137 INFYNYLIDNLLLR-GIEPFVTIYHH 161 (303)
Q Consensus 137 ~~~y~~~i~~l~~~-GI~pivtL~H~ 161 (303)
.+....+-+.|++. |+++++++++-
T Consensus 15 ~~~V~~la~~L~~~~g~~V~lD~~~~ 40 (150)
T PF08357_consen 15 KEWVLALAEFLRQNCGIDVILDQWEL 40 (150)
T ss_pred HHHHHHHHHHHHhccCCceeecHHhh
Confidence 46678888899999 99999998653
No 257
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.75 E-value=2.7e+02 Score=27.08 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=46.3
Q ss_pred CccccchHHHHHHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecC
Q 022079 93 DDHYHRFLEDIGIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYH 160 (303)
Q Consensus 93 ~d~y~~~~eDi~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H 160 (303)
.+......+..+.+|+.|++.+|-+.-=+|--|.+. -.+. .+.+..+-+.+++.||..+.+.++
T Consensus 128 iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f-~g~~---~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 128 VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDF-QGLG---VEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccc-cCCC---HHHHHHHHHHHHHcCCCEEEeeCC
Confidence 345777788888899999999996654455554432 1133 466778888899999999998865
No 258
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.65 E-value=2.7e+02 Score=20.67 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 022079 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTIYHHDFP 164 (303)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL~H~~~P 164 (303)
+.++.+|+..+|-| .+ ..+.+-+.++++.++ .|..+.+|. |-|
T Consensus 27 ~~~~~~G~~~iRGS-------s~-------rgg~~Alr~~~~~lk-~G~~~~itp---DGP 69 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS-------RGGARALREMLRALK-EGYSIAITP---DGP 69 (74)
T ss_pred HHHHHcCCCeEEeC-------CC-------CcHHHHHHHHHHHHH-CCCeEEEeC---CCC
Confidence 67889999999988 22 235677899999998 788777775 555
No 259
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.57 E-value=2.1e+02 Score=25.62 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
+++|++|++.+=++=|=.| +.+ . | ..+-+..++++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-t----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-A----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-c----H------HHHHHHHHHHCCCEEEEEE
Confidence 6899999999888887777 333 1 1 4677889999999999999
No 260
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.50 E-value=2.1e+02 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHHcCCCcccccCCcCcccccCCCCCCChhHHHHHHHHHHHHHHcCCeeEEee
Q 022079 104 GIMHSLGVNSYRFSISWPRILPKGRFGKVNPAGINFYNYLIDNLLLRGIEPFVTI 158 (303)
Q Consensus 104 ~l~k~lG~~~~R~si~W~ri~P~~~~g~~n~~~~~~y~~~i~~l~~~GI~pivtL 158 (303)
++++++|++.+=++=|=.|-.= |+= -+...+-+..++++||+|+++.
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f----~Et----~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYF----GET----DEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcC----CCC----cHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999998888776444321 111 3567888899999999999998
No 261
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=20.47 E-value=2.3e+02 Score=26.46 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCchHHHHhhCCCCChHhHHHHHHHHHHHHHHhC
Q 022079 138 NFYNYLIDNLLLRGIEPFVTIYHHDFPQQLEEKYGSWLSPQMQKEFVHLAKTCFENFG 195 (303)
Q Consensus 138 ~~y~~~i~~l~~~GI~pivtL~H~~~P~wl~~~~ggw~~~~~~~~F~~ya~~v~~~fg 195 (303)
.-...-|+.|++.|+++++.|=-++-- .++.+++..+.|+++ +...|+
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSIGG~~~~-------~~~~s~~~a~~Fa~~---l~~~~~ 106 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSIGGAGGS-------YSLSSDADAKDFADY---LWNAFG 106 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEccCCCCC-------cCCCCHHHHHHHHHH---HHHHhC
Confidence 456788999999999999998332210 112345555556555 555554
No 262
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=20.30 E-value=1.3e+02 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHcCCeeEEeecCCCC
Q 022079 134 PAGINFYNYLIDNLLLRGIEPFVTIYHHDF 163 (303)
Q Consensus 134 ~~~~~~y~~~i~~l~~~GI~pivtL~H~~~ 163 (303)
.+|+.-+.+.|+.+++.|+.++|.+++|++
T Consensus 355 ~sGl~NL~RHIenvr~FGvPvVVAINKFd~ 384 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPVVVAINKFVT 384 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 468899999999999999999999999976
Done!