BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022080
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U7L|A Chain A, Crystal Structure Of Subunit C (Vma5p) Of The Yeast
V-Atpase
Length = 392
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 1/258 (0%)
Query: 39 FNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPV 98
F IP ++G+ K ++ + + KI ++ L S +L ++ +PV
Sbjct: 48 FKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPV 107
Query: 99 DTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQS 158
YL F W K+ +++++ I ++++ D++ A YN+ ++ L A RK++
Sbjct: 108 PEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKT 167
Query: 159 GSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYE 217
G L+VR L ++VKPED ++ SEHL T+L VPK + D+ SYETL+ VVP S+ ++ E
Sbjct: 168 GDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAE 227
Query: 218 DNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSS 277
D EY L+ V LF + F AAREK F R+F YS E + +E + ++SLR
Sbjct: 228 DAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQ 287
Query: 278 LLQWCYTSYGEVCSTFLH 295
L++ T+Y +V + H
Sbjct: 288 LVRLAKTAYVDVFINWFH 305
>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4DL0|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4EFA|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase - Second
Conformation
Length = 130
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 150 LNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVV 208
L A RK++G L+VR L ++VKPED ++ SEHL T+L VPK + D+ SYETL+ VV
Sbjct: 12 LAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVV 71
Query: 209 PRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSE 255
P S+ ++ ED EY L+ V LF + F AAREK F R+F YS E
Sbjct: 72 PASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEE 118
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 121 IVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEH 180
++ G+ +LV+ L +++A Y N R+ L A RK G + + ++ +
Sbjct: 147 LLGGVTSLVSGF---LGMKIATYANARTTLEA--RKGVGKAFITAFRSGAVMGFLLAANG 201
Query: 181 LVTL---LAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYT 225
L+ L + + Y DW +E +T Y + SS L+ +YT
Sbjct: 202 LLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYT 249
>pdb|2PMS|C Chain C, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|D Chain D, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 125
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 69 VSHKIRRQIEELERVSGIESSSLSVDG--VPVDTYLTRFVWDEAKYPTMSPLREIVDGIH 126
+ +++ R +EL+ + ES + +G P+ + L +AK +S L E+ D I
Sbjct: 18 LENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKL------DAKKAKLSKLEELSDKID 71
Query: 127 TL---VAKIEDDLKVRVAEYNNV 146
L +AK+ED LK E NNV
Sbjct: 72 ELDAEIAKLEDQLKA-AEENNNV 93
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFL 294
AR+ G DF+Y A+E + +LE + D E L +S W YG F+
Sbjct: 40 ARDVGPVEDDFDY---AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFI 91
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFL 294
AR+ G DF+Y A+E + +LE + D E L +S W YG F+
Sbjct: 40 ARDVGPVEDDFDY---AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFI 91
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFL 294
AR+ G DF+Y A+E + +LE + D E L +S W YG F+
Sbjct: 40 ARDVGPVEDDFDY---AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFI 91
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFL 294
AR+ G DF+Y A+E + +LE + D E L +S W YG F+
Sbjct: 40 ARDVGPVEDDFDY---AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFI 91
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 240 AREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFL 294
AR+ G DF+Y A+E + +LE + D E L +S W YG F+
Sbjct: 40 ARDVGPVEDDFDY---AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFI 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,968,196
Number of Sequences: 62578
Number of extensions: 292286
Number of successful extensions: 909
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 12
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)