Query 022080
Match_columns 303
No_of_seqs 103 out of 215
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03223 V-ATPase_C: V-ATPase 100.0 6E-105 1E-109 771.2 29.3 296 5-300 1-299 (371)
2 KOG2909 Vacuolar H+-ATPase V1 100.0 1E-104 2E-109 746.7 28.4 299 2-300 1-302 (381)
3 COG5127 Vacuolar H+-ATPase V1 100.0 1.1E-74 2.4E-79 536.5 24.8 293 3-300 4-300 (383)
4 PRK05771 V-type ATP synthase s 96.3 0.31 6.6E-06 51.2 18.6 159 117-285 83-245 (646)
5 PF01496 V_ATPase_I: V-type AT 90.9 1.1 2.4E-05 47.9 9.2 120 177-296 137-270 (759)
6 PF12826 HHH_2: Helix-hairpin- 37.6 29 0.00064 25.4 2.3 36 45-80 22-58 (64)
7 PRK15364 pathogenicity island 33.5 3.7E+02 0.008 24.4 8.9 60 90-156 111-182 (196)
8 PF01920 Prefoldin_2: Prefoldi 33.3 2.3E+02 0.0049 21.9 9.2 85 54-154 9-96 (106)
9 COG1298 FlhA Flagellar biosynt 33.3 45 0.00097 35.7 3.6 153 116-289 506-673 (696)
10 PF08285 DPM3: Dolichol-phosph 33.3 45 0.00098 26.6 2.9 33 242-274 55-87 (91)
11 PF05278 PEARLI-4: Arabidopsis 32.2 57 0.0012 31.1 3.8 130 18-154 97-234 (269)
12 PRK03947 prefoldin subunit alp 30.8 1.7E+02 0.0038 24.3 6.3 49 106-154 80-128 (140)
13 TIGR03422 mito_frataxin fratax 30.4 1.3E+02 0.0028 24.2 5.1 68 63-130 3-96 (97)
14 PF10367 Vps39_2: Vacuolar sor 29.5 2.4E+02 0.0052 21.6 6.6 77 112-191 20-99 (109)
15 cd00890 Prefoldin Prefoldin is 28.4 3.1E+02 0.0067 21.9 8.3 36 118-153 92-127 (129)
16 cd00632 Prefoldin_beta Prefold 27.5 2.3E+02 0.0051 22.5 6.2 42 114-155 57-98 (105)
17 cd00632 Prefoldin_beta Prefold 27.4 2E+02 0.0044 22.9 5.8 40 116-155 66-105 (105)
18 PLN00064 photosystem II protei 26.1 1.2E+02 0.0025 27.0 4.4 75 60-137 84-163 (166)
19 KOG3973 Uncharacterized conser 25.1 2.2E+02 0.0048 28.5 6.5 108 38-168 185-293 (465)
20 TIGR02338 gimC_beta prefoldin, 24.4 2.8E+02 0.006 22.3 6.2 43 114-156 61-103 (110)
21 PF06657 Cep57_MT_bd: Centroso 24.3 80 0.0017 24.4 2.8 42 114-155 11-52 (79)
22 PF08606 Prp19: Prp19/Pso4-lik 24.1 3.3E+02 0.0072 20.8 6.4 40 113-152 1-40 (70)
23 TIGR03798 ocin_TIGR03798 bacte 24.1 1.3E+02 0.0029 21.8 3.9 27 232-263 26-52 (64)
24 COG5625 Predicted transcriptio 24.0 73 0.0016 26.3 2.6 29 112-140 83-111 (113)
25 PF05667 DUF812: Protein of un 23.7 60 0.0013 34.3 2.6 50 122-171 449-498 (594)
26 PF08727 P3A: Poliovirus 3A pr 23.7 46 0.00099 24.5 1.2 16 234-249 30-45 (57)
27 PF04100 Vps53_N: Vps53-like, 22.9 2.1E+02 0.0046 28.4 6.2 44 95-144 3-49 (383)
28 PF05529 Bap31: B-cell recepto 22.6 5.2E+02 0.011 22.6 8.9 38 118-155 152-189 (192)
29 cd01938 ADPGK_ADPPFK ADP-depen 22.2 1.2E+02 0.0026 30.9 4.4 50 203-259 170-229 (445)
30 cd07646 I-BAR_IMD_IRSp53 Inver 21.0 1.6E+02 0.0034 27.6 4.5 38 123-160 110-147 (232)
31 PF13949 ALIX_LYPXL_bnd: ALIX 20.6 6.7E+02 0.015 23.1 9.5 88 47-154 22-111 (296)
32 KOG1016 Predicted DNA helicase 20.0 1.7E+02 0.0037 32.6 5.0 22 181-202 312-333 (1387)
No 1
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=100.00 E-value=6.2e-105 Score=771.17 Aligned_cols=296 Identities=50% Similarity=0.812 Sum_probs=246.8
Q ss_pred EEEEeecCCCChHHH-HHHHHHHhccCCCCCCcccccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhcc
Q 022080 5 YWVVSLPVQNSAASV-WNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERV 83 (303)
Q Consensus 5 ~wLvs~P~~~~~~~~-~~~L~~~l~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~ 83 (303)
|||||+|+++++++. |+.|+..++..+..+++++|+||+||+||||+||+|||||+|+|++||++++||++++++++++
T Consensus 1 ywLvs~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~IP~lKvgTLDsLv~lsDeL~KlD~~~e~~~~Ki~~~~~~l~~~ 80 (371)
T PF03223_consen 1 YWLVSLPNEKSSQQSIWEKLQLVTSKSNNLSTVSKFNIPDLKVGTLDSLVQLSDELAKLDSFVESVVRKIERQLRDLLEG 80 (371)
T ss_dssp EEEEEEETT---TTS--HHHHHHHTGGGGTSEEEE------B-S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS
T ss_pred CEEEECCCCCCCcchHHHHHHHHhhccCCCCceeeecCCcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999997666554 9999998866666788999999999999999999999999999999999999999999999875
Q ss_pred -ccccccceeeCCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 022080 84 -SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLA 162 (303)
Q Consensus 84 -~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~GnL~ 162 (303)
+++..+++.+||+|+++||++|+||++|||+++||+||+++|++++++||+|+|+|+++||++|++|++++||++|||+
T Consensus 81 ~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKy~~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~ 160 (371)
T PF03223_consen 81 DKDKLQENLLVNGVSLEQYLTRFQWDDAKYPTRRPLKELVDIISKEVSQIDNDLKSKSSAYNNAKSNLQALERKQTGNLS 160 (371)
T ss_dssp S-SSS--S--BTTB-HHHHHHT----TTTS-TTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-TT
T ss_pred cccceeeEEEECCCcHHHHHHHheehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 5567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCCCCCCcc-ccCCceEEEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccHHHHHHHHH
Q 022080 163 VRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAR 241 (303)
Q Consensus 163 ~rsL~diV~~edfv-dsEyL~Tl~VvVPk~~~~ew~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~R 241 (303)
+|||++||+|+||| |||||+|++|||||++++||+++||||++|||||||++|++|+||+||+||||||+++||+++||
T Consensus 161 ~rsL~~iV~~ed~v~dSEyL~Tl~VvVPk~~~~ewl~~YEtL~~~VVPrSs~~i~eD~ey~L~~VtlFkk~~~eF~~~~r 240 (371)
T PF03223_consen 161 VRSLSDIVKPEDFVLDSEYLTTLLVVVPKNSVKEWLKSYETLTDMVVPRSSKKIAEDSEYVLFSVTLFKKVVDEFKNKCR 240 (371)
T ss_dssp TS--TTT--GGGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTTB-TT--EEEEE-SSEEEEEEEEEGGGHHHHHHHHH
T ss_pred cccHHhhCCHHhcccccccceEEEEEechhhHHHHHHHHhccCCccCCChHHhhhcCCCeEEEEEEEEeccHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHhhc
Q 022080 242 EKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFLHEIYSI 300 (303)
Q Consensus 242 e~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~~~~~~L~r~~~~~fse~f~awiHlK~l~ 300 (303)
|+||+||||+|+|+.++++++|+++++++++++|+.|+|||++||||+|+|||||||||
T Consensus 241 e~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiHlKalR 299 (371)
T PF03223_consen 241 EKKFIVRDFKYDEEESEEEKEEREKLETEEKKQWGELLRWCKTNFSEAFSAWIHLKALR 299 (371)
T ss_dssp HTT-EEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>KOG2909 consensus Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=9.9e-105 Score=746.73 Aligned_cols=299 Identities=44% Similarity=0.755 Sum_probs=292.6
Q ss_pred CCcEEEEeecCCCC-hHHHHHHHHHHhccCCCCCCcccccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHh
Q 022080 2 ASRYWVVSLPVQNS-AASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEEL 80 (303)
Q Consensus 2 ~~~~wLvs~P~~~~-~~~~~~~L~~~l~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l 80 (303)
|++|||||+|++++ +.++|+.+...+++.+..+.+++|.||+||+||||+||++||||+|+|++||++++||.+++.+.
T Consensus 1 Ms~fwliSlP~~~~~~~~~~d~i~~~~sk~s~~~~vs~F~IP~fkvgsLD~Lv~~se~L~Kld~~~e~~i~ki~~~~~~~ 80 (381)
T KOG2909|consen 1 MSEFWLISLPGEKTGNQQTWDRINDLTSKRSNLSTVSKFNIPDFKVGSLDVLVGLSEELGKLDTFVEGLIKKIAGYLKEV 80 (381)
T ss_pred CcceEEEeCCcCCcccccHHHHHHHHHhccccccccccccCCCcccccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56999999999766 78999999999998777889999999999999999999999999999999999999999999888
Q ss_pred hcc-ccccccceeeCCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 022080 81 ERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSG 159 (303)
Q Consensus 81 ~~~-~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~G 159 (303)
+++ .+++.+++.+||+|+.+|+++|+||++|||.++||++++++|++++++||+|+|+|+++||++|++||+++||++|
T Consensus 81 le~~s~~~~~~l~~n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~~G 160 (381)
T KOG2909|consen 81 LEDSSGKVGENLMANGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKKTG 160 (381)
T ss_pred HhhcccchhhceeeCCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccC
Confidence 875 7788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcCCCCCCCcc-ccCCceEEEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccHHHHHH
Q 022080 160 SLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRI 238 (303)
Q Consensus 160 nL~~rsL~diV~~edfv-dsEyL~Tl~VvVPk~~~~ew~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~ 238 (303)
||++|||++||+||||| |||||+|++|||||+.++||+++||||+|||||||+++|.||+||+||+||||||++|+|++
T Consensus 161 sL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~V~lFkk~~edFr~ 240 (381)
T KOG2909|consen 161 SLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFTVTLFKKVAEDFRT 240 (381)
T ss_pred ChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEEEEEeehhHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHhhc
Q 022080 239 AAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFLHEIYSI 300 (303)
Q Consensus 239 ~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~~~~~~L~r~~~~~fse~f~awiHlK~l~ 300 (303)
+|||+||+||||.|++++++++++|++++++++++|+++|+|||++||||+|++||||||||
T Consensus 241 ~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~~~Llr~~kv~fsEvF~~wiHiKaLR 302 (381)
T KOG2909|consen 241 KAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMRGPLLRWLKVNFSEVFIAWIHIKALR 302 (381)
T ss_pred HHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 3
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=1.1e-74 Score=536.51 Aligned_cols=293 Identities=26% Similarity=0.380 Sum_probs=269.4
Q ss_pred CcEEEEeecCC--CChHHHHHHHHHHhccCCCCCCcccccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHh
Q 022080 3 SRYWVVSLPVQ--NSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEEL 80 (303)
Q Consensus 3 ~~~wLvs~P~~--~~~~~~~~~L~~~l~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l 80 (303)
+.|||||+|.. ++..+ ++....+-++. +.+.+|.||.||+|+||.||.+|++|.|+|++|++.+.||.+++..+
T Consensus 4 sdFilvslP~~~~Gs~~d--~d~~~~l~ggr--stvs~f~~P~Fk~~SLd~lI~qsE~L~k~d~qc~~aIsKi~~i~~g~ 79 (383)
T COG5127 4 SDFILVSLPVEEDGSRPD--EDQIWDLYGGR--STVSRFLLPSFKGVSLDGLINQSERLGKLDKQCEGAISKILKIFMGY 79 (383)
T ss_pred cceEEEeccccccCCCCc--HHHHHHHhcCc--cccccccCCCccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 68999999983 33322 34334333333 56899999999999999999999999999999999999999999999
Q ss_pred hccccccccc-eeeCCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 022080 81 ERVSGIESSS-LSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSG 159 (303)
Q Consensus 81 ~~~~~~~~~~-l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~G 159 (303)
+......... -.++|.++ +|+..|+||..+|..+++|.+++..|..|..++++|+|+|.++|+.||.+++++|||++|
T Consensus 80 ~~ss~gd~~~~~iv~~~~p-Ey~~~f~W~~~~F~~nKsI~~~i~li~~E~~~~~~d~r~~~~~f~~Ak~~~~~~qrk~~G 158 (383)
T COG5127 80 CRSSNGDRVGKGIVYGSTP-EYGDFFEWDRQSFVTNKSIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRG 158 (383)
T ss_pred hccccccccccccccCCch-hhhhhhhcchhheeccccHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 9743323333 33455555 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcCCCCCCCcc-ccCCceEEEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccHHHHHH
Q 022080 160 SLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRI 238 (303)
Q Consensus 160 nL~~rsL~diV~~edfv-dsEyL~Tl~VvVPk~~~~ew~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~ 238 (303)
||+++||++||++|||| +||||||++|||||+..++|+++||||++.|+|+|+++|++|+||.||+|++|||.+++|++
T Consensus 159 ~Ls~~sL~~IV~~eDvv~gse~Lt~v~vaVpk~l~~~F~~syeTls~~V~p~sa~kv~~D~EyvLf~V~vfkk~~~~f~t 238 (383)
T COG5127 159 SLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEEDFRT 238 (383)
T ss_pred ChhhhhHhhhcCchhhccchhhheeeEEEehhhhhHHHHhhhhhcCcccChhHHhhhcCccceEEEEEEEEecChHHHHH
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHhhc
Q 022080 239 AAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFLHEIYSI 300 (303)
Q Consensus 239 ~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~~~~~~L~r~~~~~fse~f~awiHlK~l~ 300 (303)
+|||.||+||||.|+++..++++.|+++++..++++...|+|+..++|+|+|+.|||||+||
T Consensus 239 ~are~kf~vref~~~~~l~e~~~~e~d~Aa~ke~~m~~~L~r~a~va~~evF~~wiHiK~Lr 300 (383)
T COG5127 239 MAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAMEKILMRFAHVALTEVFRIWIHIKLLR 300 (383)
T ss_pred HHHhcCcchhhcchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 4
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=96.34 E-value=0.31 Score=51.23 Aligned_cols=159 Identities=18% Similarity=0.304 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCcCC-CCCCCccccCCceEEEEEecCCChHH
Q 022080 117 PLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNL-VKPEDIITSEHLVTLLAVVPKYSQKD 195 (303)
Q Consensus 117 ~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~di-V~~edfvdsEyL~Tl~VvVPk~~~~e 195 (303)
+..++.+....++.+++++++...+..++++++++.++.... ..+.+.++ +..+++-+++|+...+-.||+...+.
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~---~l~~~~~ld~~l~~~~~~~~~~~~~G~i~~~~~~~ 159 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE---RLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEE 159 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhcCCCCHHHhCCCCcEEEEEEEecchhhhh
Confidence 455555566666666777776666666666666666554322 12233332 11222336788888899999877664
Q ss_pred HHHHhccccCccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeeeccc---CHHHHHHHHHHHHHHHHHHH
Q 022080 196 WLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEY---SSEAQESRNQELEKLVHDQE 272 (303)
Q Consensus 196 w~~~YEtL~~~VVPrSs~~i~eD~e~~L~~V~lFkk~~~eF~~~~Re~kf~vRdF~y---~ee~~~~~~~e~~~l~~e~~ 272 (303)
..++....++ ..+.++.++.-+-|+.-+...++....|+..+|..-++-. -++.+++.++++++++++.+
T Consensus 160 --~~~~~~~~~~-----~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~ 232 (646)
T PRK05771 160 --LKLESDVENV-----EYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERE 232 (646)
T ss_pred --HHhhccCceE-----EEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1222211122 3456777777666666678889999999998876544421 35667778888888888888
Q ss_pred HHHhHHHHHHHhh
Q 022080 273 SLRSSLLQWCYTS 285 (303)
Q Consensus 273 ~~~~~L~r~~~~~ 285 (303)
+....+.+++...
T Consensus 233 ~~~~~l~~~~~~~ 245 (646)
T PRK05771 233 SLLEELKELAKKY 245 (646)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888866543
No 5
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=90.95 E-value=1.1 Score=47.94 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=65.3
Q ss_pred ccCCceE--EEEEecCCChHHHHHHhccccCc-cccCCc--ccccccCC----eeEEEEE-EecccHHHHHHHHHHcCCe
Q 022080 177 TSEHLVT--LLAVVPKYSQKDWLASYETLTSY-VVPRSS--KLLYEDNE----YALYTVT-LFGRVADNFRIAAREKGFQ 246 (303)
Q Consensus 177 dsEyL~T--l~VvVPk~~~~ew~~~YEtL~~~-VVPrSs--~~i~eD~e----~~L~~V~-lFkk~~~eF~~~~Re~kf~ 246 (303)
+++++.. ++=+||+.....|.+..++.+.- +.-+.+ ..+..|.. -..|-|. .=++..++...-|+..+|.
T Consensus 137 ~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~ 216 (759)
T PF01496_consen 137 SSKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFE 216 (759)
T ss_dssp ---------------HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--
T ss_pred cccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCce
Confidence 4455544 67789999999999988876654 222221 22233332 2334333 3467889999999999998
Q ss_pred eeecccCH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 022080 247 IRDFEYSS----EAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVCSTFLHE 296 (303)
Q Consensus 247 vRdF~y~e----e~~~~~~~e~~~l~~e~~~~~~~L~r~~~~~fse~f~awiHl 296 (303)
.=++..++ +.+++.++++++++++.++....+.+++.....++...+..+
T Consensus 217 ~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l 270 (759)
T PF01496_consen 217 RYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYL 270 (759)
T ss_dssp B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654333 556678888888888888888888887776655555444444
No 6
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=37.63 E-value=29 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=24.5
Q ss_pred CCCChhhhHhhh-hhhHhhhhhHHHHHHHHHHHHHHh
Q 022080 45 RVGTLDSLLALS-DDLVKSNSFVESVSHKIRRQIEEL 80 (303)
Q Consensus 45 KvGTLDsLv~ls-DeL~K~D~~~e~~v~Ki~~~~~~l 80 (303)
++||+|.|+..+ |||..++..=+.+.+.|.+.+.+=
T Consensus 22 ~f~sl~~l~~a~~e~L~~i~gIG~~~A~si~~ff~~~ 58 (64)
T PF12826_consen 22 HFGSLEALMNASVEELSAIPGIGPKIAQSIYEFFQDP 58 (64)
T ss_dssp CCSCHHHHCC--HHHHCTSTT--HHHHHHHHHHHH-H
T ss_pred HcCCHHHHHHcCHHHHhccCCcCHHHHHHHHHHHCCH
Confidence 478899888775 678888888888888888777653
No 7
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=33.51 E-value=3.7e+02 Score=24.42 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=38.5
Q ss_pred ceeeCCCChhhhhcccccccccCCCCC-----CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022080 90 SLSVDGVPVDTYLTRFVWDEAKYPTMS-----PLREIVDGIHT-------LVAKIEDDLKVRVAEYNNVRSQLNAINRK 156 (303)
Q Consensus 90 ~l~v~~~~~~~yl~~F~Wd~aKyp~~~-----~l~el~~~i~~-------~v~~id~dlk~k~~~Yn~~K~~l~~l~RK 156 (303)
.++|+|+++++|| .|||... .|.-+-..|.. -+++--=.+...++.||.+-+.+..++-+
T Consensus 111 gI~VdG~sid~Yl-------~k~~~~~~LdkG~LqAVKAALd~~snr~TD~vsQsQLqiQk~~QtyN~~vs~~nslqs~ 182 (196)
T PRK15364 111 GILIDGMTIDDYM-------AKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQITIQKMSQELNAVLTQLTGLISK 182 (196)
T ss_pred CceecccchHHHH-------hccCCccCCChhhHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999 5577433 22223223322 23333345678889999988888887754
No 8
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.33 E-value=2.3e+02 Score=21.89 Aligned_cols=85 Identities=15% Similarity=0.293 Sum_probs=46.2
Q ss_pred hhhhhhHhhhhhHHHH---HHHHHHHHHHhhccccccccceeeCCCChhhhhcccccccccCCCCCCHHHHHHHHHHHHH
Q 022080 54 ALSDDLVKSNSFVESV---SHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVA 130 (303)
Q Consensus 54 ~lsDeL~K~D~~~e~~---v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~el~~~i~~~v~ 130 (303)
.+..+|..+.+.+..+ ++.+...+.+|..-++.......|++. | ...|..++.+.|.+...
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~----f------------v~~~~~~~~~~L~~~~~ 72 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKM----F------------VKQDKEEAIEELEERIE 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTE----E------------EEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHH----H------------HHhhHHHHHHHHHHHHH
Confidence 3445555555555554 445555556665433322334445553 2 23466667666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022080 131 KIEDDLKVRVAEYNNVRSQLNAIN 154 (303)
Q Consensus 131 ~id~dlk~k~~~Yn~~K~~l~~l~ 154 (303)
.++.+++........+..++..++
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555544
No 9
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.30 E-value=45 Score=35.74 Aligned_cols=153 Identities=15% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCcCCCCCCCccccCCceEEEEEecCCChHH
Q 022080 116 SPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKD 195 (303)
Q Consensus 116 ~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~diV~~edfvdsEyL~Tl~VvVPk~~~~e 195 (303)
+-.++|+|.+.++.-++=+|+..+.-.|+.+..=|+++-|- -.++|+|..|+ +|+-..-|...--+
T Consensus 506 qevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E---~VsIRdl~tIl-----------Etlad~a~~~kd~~ 571 (696)
T COG1298 506 QEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKE---RVSIRDLPTIL-----------ETLADYAPITKDPD 571 (696)
T ss_pred HHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHHHhc---CCccccHHHHH-----------HHHHHhcccCCCHH
Confidence 45677888888888888888888888999999999998876 46788887774 23322233333222
Q ss_pred HHHHhccccCccccCCcccccc---cCCeeEEEEEEecccHHHHHHHHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHH
Q 022080 196 WLASYETLTSYVVPRSSKLLYE---DNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQE 272 (303)
Q Consensus 196 w~~~YEtL~~~VVPrSs~~i~e---D~e~~L~~V~lFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~ 272 (303)
-|+.+|=-+=+++|+. |++-.|+-+|+=-+...-|.++.++.+ ..+++..++...++..++..+...+..
T Consensus 572 ------~L~e~VR~~L~r~I~~~~~~~~~~L~VitL~~~~E~~l~~s~~~~~-~~~~~~i~p~~~~~l~~~v~~~~~~~~ 644 (696)
T COG1298 572 ------ELTEKVRQALGRQITQQLLDENGELEVITLDPSLEQLLLNSLQKGG-ELDELPLDPDLLEKLIRQVKEELERVE 644 (696)
T ss_pred ------HHHHHHHHHHHHHHHHHhhCcCCeEEEEEeChHHHHHHHHHHhccC-ccccccCChHHHHHHHHHHHHHHHHHH
Confidence 2344444455566653 455668877777766666776666666 888888999988876666665554332
Q ss_pred ------------HHHhHHHHHHHhhhHHH
Q 022080 273 ------------SLRSSLLQWCYTSYGEV 289 (303)
Q Consensus 273 ------------~~~~~L~r~~~~~fse~ 289 (303)
+.+..+.|.++-.|+++
T Consensus 645 ~~G~~~VLl~s~~~R~~~~~~~~r~~p~l 673 (696)
T COG1298 645 QKGFPPVLLVSPELRPYLRRILERYFPDL 673 (696)
T ss_pred hcCCCeEEEeCcchHHHHHHHHHHhCCCC
Confidence 23455666666666654
No 10
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=33.29 E-value=45 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=28.5
Q ss_pred HcCCeeeecccCHHHHHHHHHHHHHHHHHHHHH
Q 022080 242 EKGFQIRDFEYSSEAQESRNQELEKLVHDQESL 274 (303)
Q Consensus 242 e~kf~vRdF~y~ee~~~~~~~e~~~l~~e~~~~ 274 (303)
.-||-|-.|+--||++++.++|++++.++.++.
T Consensus 55 ~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 55 TLGYGVATFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 457888889999999999999999999988764
No 11
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.21 E-value=57 Score=31.14 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCCCCCCcccccCCCCCCCChhhhHhhhhhhHh--hhhhHHHHHHHHHHHHHHhhccccccccceeeC-
Q 022080 18 SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVK--SNSFVESVSHKIRRQIEELERVSGIESSSLSVD- 94 (303)
Q Consensus 18 ~~~~~L~~~l~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K--~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~- 94 (303)
..-..|++-+.+.+..+.++.+.=|.||--=|++|..+..+|.. +-..-+.-++++...+.|+... .+.|+
T Consensus 97 S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa------~vkV~W 170 (269)
T PF05278_consen 97 SQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESA------KVKVDW 170 (269)
T ss_pred hHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHc------CcchHH
Confidence 34455666666777777788899999999999999999999987 4677888899999999998632 22221
Q ss_pred -CCChhh---hhcccc-cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022080 95 -GVPVDT---YLTRFV-WDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (303)
Q Consensus 95 -~~~~~~---yl~~F~-Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~ 154 (303)
...++. +...+. |.++.=- ..-..-.++....++....++++.+-..+.+++.+...+.
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~e-ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEE-KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMK 234 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222 211111 2222211 1112223455566777777778887777777776665544
No 12
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=30.78 E-value=1.7e+02 Score=24.28 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=29.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022080 106 VWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (303)
Q Consensus 106 ~Wd~aKyp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~ 154 (303)
-|=.+-|=...++.+-++.|.+.+..++..++.-......++.+++.++
T Consensus 80 v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 128 (140)
T PRK03947 80 VSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLA 128 (140)
T ss_pred EEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777666666655555555555555554444
No 13
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=30.42 E-value=1.3e+02 Score=24.20 Aligned_cols=68 Identities=7% Similarity=0.160 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccc-----------------ccceeeCCCChhhhh---------cccccccccCCCCC
Q 022080 63 NSFVESVSHKIRRQIEELERVSGIE-----------------SSSLSVDGVPVDTYL---------TRFVWDEAKYPTMS 116 (303)
Q Consensus 63 D~~~e~~v~Ki~~~~~~l~~~~~~~-----------------~~~l~v~~~~~~~yl---------~~F~Wd~aKyp~~~ 116 (303)
...++.++..|++.+.+..++.... .....||.+++-.=| .+|.|+..++-..|
T Consensus 3 ~~~ad~~L~~ie~~le~~~d~~~d~~~D~e~~~gVLti~~~~~~~~VINkQ~p~~QIWlsSp~sGp~hfd~~~~~Wi~~r 82 (97)
T TIGR03422 3 HKVADEYLDHLLDKLEELGESRPDLDFDVEYSSGVLTLELPSVGTYVINKQPPNKQIWLSSPVSGPKRYDYVNGEWIYLR 82 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccCCCEEEEEECCCCEEEEeCCChhhHHheecCCCCCcceeecCCEEEECC
Confidence 3456667777777776543321110 112334555544443 48999999998888
Q ss_pred CHHHHHHHHHHHHH
Q 022080 117 PLREIVDGIHTLVA 130 (303)
Q Consensus 117 ~l~el~~~i~~~v~ 130 (303)
+=.+|.+.|+++++
T Consensus 83 ~g~~L~~~L~~e~~ 96 (97)
T TIGR03422 83 DGSSLTELLEEELS 96 (97)
T ss_pred CCChHHHHHHHHHc
Confidence 88888888888775
No 14
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=29.52 E-value=2.4e+02 Score=21.62 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=48.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCcCCCCCCCc--c-ccCCceEEEEEe
Q 022080 112 YPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDI--I-TSEHLVTLLAVV 188 (303)
Q Consensus 112 yp~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~diV~~edf--v-dsEyL~Tl~VvV 188 (303)
.|.+-||.++.+-|.+.+....+..+...-..+-++....+++++-. ..++-.-+|+++.. | .-......|++-
T Consensus 20 LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~---~~~~~~v~i~~~~~C~vC~k~l~~~~f~~~ 96 (109)
T PF10367_consen 20 LPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELV---KLRSRSVVITESTKCSVCGKPLGNSVFVVF 96 (109)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---hhcCceEEECCCCCccCcCCcCCCceEEEe
Confidence 58899999999999999999888888777777777766666554432 11222223443322 1 333333566666
Q ss_pred cCC
Q 022080 189 PKY 191 (303)
Q Consensus 189 Pk~ 191 (303)
|.+
T Consensus 97 p~~ 99 (109)
T PF10367_consen 97 PCG 99 (109)
T ss_pred CCC
Confidence 654
No 15
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.40 E-value=3.1e+02 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022080 118 LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (303)
Q Consensus 118 l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l 153 (303)
+.+=++.|.+.+.++++.++.+...++.++.+++.+
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555556666666666666666666666553
No 16
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.55 E-value=2.3e+02 Score=22.46 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022080 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (303)
Q Consensus 114 ~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~R 155 (303)
..+|..++...|.+.+..++..++.-...+..+..++..++.
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888777777777777777666666666666665554
No 17
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.39 E-value=2e+02 Score=22.85 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022080 116 SPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (303)
Q Consensus 116 ~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~R 155 (303)
..|.+-++.|..++.+++..++......+++|.++..+++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577778899999999999999999999999999988763
No 18
>PLN00064 photosystem II protein Psb27; Provisional
Probab=26.07 E-value=1.2e+02 Score=26.98 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=44.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhccccccccceeeCCC----ChhhhhcccccccccCCCCCCHHH-HHHHHHHHHHHHHH
Q 022080 60 VKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGV----PVDTYLTRFVWDEAKYPTMSPLRE-IVDGIHTLVAKIED 134 (303)
Q Consensus 60 ~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~----~~~~yl~~F~Wd~aKyp~~~~l~e-l~~~i~~~v~~id~ 134 (303)
.+-|.-.+..+....+.+.+.... -...-.++|. ++.+-|..-.=.-..|+.++||+| +-+.|.+|+.+.|.
T Consensus 84 ~~ddp~~a~a~aeaR~~iNdyvSr---YRr~~~v~Gl~SFttMyTALNaLAGHY~SfgpnrPlPeKlK~RL~qE~~~AEk 160 (166)
T PLN00064 84 DKTDPNVADAVAELRETSNSWVAK---YRREKALLGRPSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEK 160 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH---hcCCCcccCcccHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 344445555555555555554421 0112334553 455555566666678887888876 66788999998887
Q ss_pred HHH
Q 022080 135 DLK 137 (303)
Q Consensus 135 dlk 137 (303)
.++
T Consensus 161 al~ 163 (166)
T PLN00064 161 ALL 163 (166)
T ss_pred HHH
Confidence 664
No 19
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=25.09 E-value=2.2e+02 Score=28.52 Aligned_cols=108 Identities=21% Similarity=0.182 Sum_probs=63.0
Q ss_pred cccCCCCCCCChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeeCCCChhhhhcccccccccCCCCCC
Q 022080 38 RFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSP 117 (303)
Q Consensus 38 ~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~ 117 (303)
...-|=|| .+||. -.+.+++++++++-+.+.--..=+ . ..++--+.+|.|++.- +.-
T Consensus 185 ~~~~PLlK-kpl~~-----a~w~~iE~~~~~~~~ey~~Rr~ll-~-------------sRL~vTVqSF~Wsdr~---k~~ 241 (465)
T KOG3973|consen 185 QRSHPLLK-KPLDE-----ATWPEIEKQCESFSREYYNRRLLL-N-------------SRLKVTVQSFLWSDRL---KMH 241 (465)
T ss_pred hcCCchhc-CcCCh-----hhHHHHHHHHHHHHHHHHHHHHHH-H-------------HHHHHHHHhhcccHHH---HHH
Confidence 45567777 67764 357788888888776654322111 1 1123335789998742 222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCCcccccCcC
Q 022080 118 LREIVDGIHTLVAKIEDD-LKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSN 168 (303)
Q Consensus 118 l~el~~~i~~~v~~id~d-lk~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~d 168 (303)
-.|+.++++..+..|+.- ..+-++..=.|++.|..++|-.++|.--|.-+-
T Consensus 242 ~~ei~~~~~~~~rei~~~K~~~dvahLLaArsdL~~I~ktSS~~~Re~Task 293 (465)
T KOG3973|consen 242 REEIQSILSARVREIGRVKANSDVAHLLAARSDLLYIQKTSSMDRRERTASK 293 (465)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHhhhhHHHHHhhcccchhhhhhhh
Confidence 236666666666655421 122344556788888889988777655444333
No 20
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.40 E-value=2.8e+02 Score=22.31 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022080 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRK 156 (303)
Q Consensus 114 ~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK 156 (303)
..++..++...+.+.+..+|..++.-......+..++..++++
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999888888888888887754
No 21
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.27 E-value=80 Score=24.42 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022080 114 TMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (303)
Q Consensus 114 ~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~R 155 (303)
+...|.+++..++.++.++--++......|+........-.|
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R 52 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKR 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHH
Confidence 445667777777777777777777776666665554443333
No 22
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=24.10 E-value=3.3e+02 Score=20.85 Aligned_cols=40 Identities=10% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022080 113 PTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNA 152 (303)
Q Consensus 113 p~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~ 152 (303)
|..-||+.|+..+++|--.+-=+.=..-+.++..+.+|..
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999988888776655554444555555555543
No 23
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=24.06 E-value=1.3e+02 Score=21.82 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHcCCeeeecccCHHHHHHHHHH
Q 022080 232 VADNFRIAAREKGFQIRDFEYSSEAQESRNQE 263 (303)
Q Consensus 232 ~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e 263 (303)
..++|+.-|++.|| .+++++......+
T Consensus 26 ~~e~~~~lA~~~Gf-----~ft~~el~~~~~e 52 (64)
T TIGR03798 26 DPEDRVAIAKEAGF-----EFTGEDLKEAGEE 52 (64)
T ss_pred CHHHHHHHHHHcCC-----CCCHHHHHHHHhh
Confidence 47899999999999 7888877654333
No 24
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=24.03 E-value=73 Score=26.28 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022080 112 YPTMSPLREIVDGIHTLVAKIEDDLKVRV 140 (303)
Q Consensus 112 yp~~~~l~el~~~i~~~v~~id~dlk~k~ 140 (303)
=|+-+||.++-+-|.+++..||.++|.-+
T Consensus 83 ~~P~k~leei~~~i~keiEelEk~~k~es 111 (113)
T COG5625 83 TPPPKPLEEIEEEIMKEIEELEKEFKNES 111 (113)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667899999999999999999998754
No 25
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.69 E-value=60 Score=34.33 Aligned_cols=50 Identities=16% Similarity=0.370 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccCcCCCC
Q 022080 122 VDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVK 171 (303)
Q Consensus 122 ~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~GnL~~rsL~diV~ 171 (303)
+..+..++..+..+++.|-..|++++..+..+.+...-+-=|+.+.+||+
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~ 498 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 44677889999999999999999999999998877666667777777774
No 26
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=23.66 E-value=46 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCeeee
Q 022080 234 DNFRIAAREKGFQIRD 249 (303)
Q Consensus 234 ~eF~~~~Re~kf~vRd 249 (303)
++.+.-|+++|||+.+
T Consensus 30 ~eV~~YC~~~GWIip~ 45 (57)
T PF08727_consen 30 PEVREYCEEQGWIIPA 45 (57)
T ss_dssp HHHHHHHHHHT--TT-
T ss_pred HHHHHHHHHCCccccC
Confidence 5689999999999876
No 27
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=22.87 E-value=2.1e+02 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=34.9
Q ss_pred CCChhhhhcccccccccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022080 95 GVPVDTYLTRFVWDEAKYPTMSP---LREIVDGIHTLVAKIEDDLKVRVAEYN 144 (303)
Q Consensus 95 ~~~~~~yl~~F~Wd~aKyp~~~~---l~el~~~i~~~v~~id~dlk~k~~~Yn 144 (303)
+.++-+||. .-||..+| |++++..+.+++.++|++++....++.
T Consensus 3 dfdpv~~in------~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~ 49 (383)
T PF04100_consen 3 DFDPVDYIN------ELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQS 49 (383)
T ss_pred CCCHHHHHH------HhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667773 45887766 567788899999999999999988886
No 28
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.63 E-value=5.2e+02 Score=22.59 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022080 118 LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (303)
Q Consensus 118 l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~R 155 (303)
..+-.+...+++.++.++++.+-..+..+|.|..++++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777888899999999999999999999999988875
No 29
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=22.16 E-value=1.2e+02 Score=30.90 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=32.5
Q ss_pred ccCccccCCcccccc-cCCeeEEEEEEecccHHHHHHHHHHc--------CCe-eeecccCHHHHHH
Q 022080 203 LTSYVVPRSSKLLYE-DNEYALYTVTLFGRVADNFRIAAREK--------GFQ-IRDFEYSSEAQES 259 (303)
Q Consensus 203 L~~~VVPrSs~~i~e-D~e~~L~~V~lFkk~~~eF~~~~Re~--------kf~-vRdF~y~ee~~~~ 259 (303)
..++++|||.+.|.. |....++ ..++|.....+. ||+ .++|.++.+.+++
T Consensus 170 ~~~~~aPraNRfI~~~d~~n~l~-------~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~ 229 (445)
T cd01938 170 WGDFVAPRANRFIFHDDDNNPML-------MREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKE 229 (445)
T ss_pred ecceEcCCCCeEEEecCCcchhh-------hhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHH
Confidence 458999999999974 4444443 345566666665 777 5566666666554
No 30
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=20.95 E-value=1.6e+02 Score=27.61 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 022080 123 DGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGS 160 (303)
Q Consensus 123 ~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~RK~~Gn 160 (303)
.-|.....+-..+.|.|..+|...++.|-.+.||..|.
T Consensus 110 k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~ 147 (232)
T cd07646 110 RYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGS 147 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34555677788899999999999999999999998875
No 31
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.64 E-value=6.7e+02 Score=23.08 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=60.5
Q ss_pred CChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeeCCCChhhhhccc--ccccccCCCCCCHHHHHHH
Q 022080 47 GTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRF--VWDEAKYPTMSPLREIVDG 124 (303)
Q Consensus 47 GTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F--~Wd~aKyp~~~~l~el~~~ 124 (303)
|.++.|...-.+|..+-.-+++.+..+.+.+.+-..... .+-..| .|.-. |-.++...
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~--------------~~r~~~g~~W~r~------~S~~~~~~ 81 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDE--------------QLRAKYGERWTRP------PSSELNAS 81 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHSTTTCGSS-------HHHHCHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhcCCCcCC------CcHhhHHH
Confidence 348899999999999999999999999988877543211 122233 45332 66666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022080 125 IHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (303)
Q Consensus 125 i~~~v~~id~dlk~k~~~Yn~~K~~l~~l~ 154 (303)
+..++.++...|..-.+.-..++..+....
T Consensus 82 l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~ 111 (296)
T PF13949_consen 82 LRKELQKYREYLEQASESDSQLRSKLESIE 111 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777777776666666666666543
No 32
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=20.04 E-value=1.7e+02 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=19.5
Q ss_pred ceEEEEEecCCChHHHHHHhcc
Q 022080 181 LVTLLAVVPKYSQKDWLASYET 202 (303)
Q Consensus 181 L~Tl~VvVPk~~~~ew~~~YEt 202 (303)
--|++|+||-|-...|++.|--
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnm 333 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNM 333 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhh
Confidence 3689999999999999999864
Done!