BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022081
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
Length = 496
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 121/318 (38%), Gaps = 47/318 (14%)
Query: 3 RQVSFSGILSSDPSQNPDFFSWNKVKIRYCDGASFAGRPESEFKNGTNLFFRGQLIWEAL 62
R + +GILSS P +NP +++ N V I YC ++G KN F G LI + +
Sbjct: 154 RTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKN--EYAFMGALIIQEV 211
Query: 63 MDELLSVGMSNAKQAFLTGCSAGGLAAVIHCDDFRERLPQHA----TVKCLADASFFLDE 118
+ ELL G+S AK L G SAGG +++ D E+L + V+ LAD+ +FLD
Sbjct: 212 VRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDN 271
Query: 119 S--------DVQGNRTMRSFYDDVFHLQGVAKSLDRNCLSRMGNSRCLFPREFIKNIRTP 170
D + + + GV R C F + +R P
Sbjct: 272 KQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCP 331
Query: 171 VFIVNPAYDFWQIRNILVPDVSDPQGYWQTCRLNIHSCNPNQLEILKGFRNSLLNALSEF 230
VF+V +D +L + + + + +G R + N E
Sbjct: 332 VFVVQWLFD--------------------EAQLTVDNVHLTGQPVQEGLRLYIQNLGREL 371
Query: 231 QQ--KNEAGMFVNSCYIH----CQTWMAETWHSPSSPRI-----NSKTIAESVGDWYFNR 279
+ K+ F +C H W S PR S +
Sbjct: 372 RHTLKDVPASFAPACLSHEIIIRSHWTDVQVKGTSLPRALHCWDRSLHDSHKASKTPLKG 431
Query: 280 GAVKLID-CPYP-CNPTC 295
V L+D CP+P CNP+C
Sbjct: 432 CPVHLVDSCPWPHCNPSC 449
>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
Length = 503
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 16/205 (7%)
Query: 8 SGILSSDPSQNPDFFSWNKVKIRYCDGASFAGRPESEFKNGTNLFFRGQLIWEALMDELL 67
+GILSS P +NP +++ N V I YC ++G KN F G LI + ++ ELL
Sbjct: 166 TGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKN--EYAFMGSLIIQEVVRELL 223
Query: 68 SVGMSNAKQAFLTGCSAGGLAAVIHCDDFRERLPQHA----TVKCLADASFFLDES---- 119
G+S AK L G SAGG +++ D E L + V+ LAD+ +FLD
Sbjct: 224 GKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRR 283
Query: 120 ----DVQGNRTMRSFYDDVFHLQGVAKSLDRNCLSRMGNSRCLFPREFIKNIRTPVFIVN 175
D + + + G+ + C F + +R PVF+V
Sbjct: 284 SDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQ 343
Query: 176 PAYDFWQ--IRNILVPDVSDPQGYW 198
+D Q + N+ + +G W
Sbjct: 344 WLFDEAQLTVDNVHLTGQPVQEGQW 368
>sp|P37230|PPARA_RAT Peroxisome proliferator-activated receptor alpha OS=Rattus
norvegicus GN=Ppara PE=1 SV=1
Length = 468
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 21/175 (12%)
Query: 22 FSWNKVKIRYCDGASFAGRPESEFKNGTNLFFRGQLIWEALMDELLSVGMSN--AKQAFL 79
F+ NKVK R + P + L + + L+ ++++ G+ N A+ F
Sbjct: 218 FNMNKVKARVILAGKTSNNPPFVIHDMETLC----MAEKTLVAKMVANGVENKEAEVRFF 273
Query: 80 TGCSAGGLAAVIHCDDFRERLPQHATVKCLADASFFLDESDVQGNRTMRSFYDDVFHLQG 139
C + V +F + +P A LD +D Q Y+ +F +
Sbjct: 274 HCCQCMSVETVTELTEFAKAIPGFAN----------LDLND-QVTLLKYGVYEAIFTMLS 322
Query: 140 VAKSLDRNCLSRMGNSRCLFPREFIKNIRTPVF-IVNPAYDFWQIRNILVPDVSD 193
+ D L GN REF+KN+R P I+ P +DF N L D SD
Sbjct: 323 SLMNKD-GMLIAYGNG--FITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSD 374
>sp|Q04Y45|HRCA_LEPBL Heat-inducible transcription repressor HrcA OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=hrcA PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 177 AYDFWQIRNILVPDV----SDPQGYWQTCRLNIHSCNPNQLEI---LKGFRNSLLNALSE 229
YD ++I+N++VP++ P+ + + L + NP+ E+ + GF+N N E
Sbjct: 188 GYDIYEIQNVVVPNLMVRRDGPEDFTRIAELLSSAMNPDNSEVTLYIDGFKNLYANFRDE 247
Query: 230 FQQ 232
QQ
Sbjct: 248 EQQ 250
>sp|Q04VD0|HRCA_LEPBJ Heat-inducible transcription repressor HrcA OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=hrcA PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 177 AYDFWQIRNILVPDV----SDPQGYWQTCRLNIHSCNPNQLEI---LKGFRNSLLNALSE 229
YD ++I+N++VP++ P+ + + L + NP+ E+ + GF+N N E
Sbjct: 188 GYDIYEIQNVVVPNLMVRRDGPEDFTRIAELLSSAMNPDNSEVTLYIDGFKNLYANFRDE 247
Query: 230 FQQ 232
QQ
Sbjct: 248 EQQ 250
>sp|P23204|PPARA_MOUSE Peroxisome proliferator-activated receptor alpha OS=Mus musculus
GN=Ppara PE=1 SV=2
Length = 468
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 21/175 (12%)
Query: 22 FSWNKVKIRYCDGASFAGRPESEFKNGTNLFFRGQLIWEALMDELLSVGMSN--AKQAFL 79
F+ NKVK R + P + L + + L+ ++++ G+ + A+ F
Sbjct: 218 FNMNKVKARVILAGKTSNNPPFVIHDMETLC----MAEKTLVAKMVANGVEDKEAEVRFF 273
Query: 80 TGCSAGGLAAVIHCDDFRERLPQHATVKCLADASFFLDESDVQGNRTMRSFYDDVFHLQG 139
C + V +F + +P A LD +D Q Y+ +F +
Sbjct: 274 HCCQCMSVETVTELTEFAKAIPGFAN----------LDLND-QVTLLKYGVYEAIFTMLS 322
Query: 140 VAKSLDRNCLSRMGNSRCLFPREFIKNIRTPVF-IVNPAYDFWQIRNILVPDVSD 193
+ D L GN REF+KN+R P I+ P +DF N L D SD
Sbjct: 323 SLMNKD-GMLIAYGNG--FITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSD 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,595,355
Number of Sequences: 539616
Number of extensions: 4791717
Number of successful extensions: 11431
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11425
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)