Query 022082
Match_columns 303
No_of_seqs 303 out of 1334
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA00280 putative NHN endonucl 99.9 8.3E-27 1.8E-31 195.0 7.9 94 123-225 26-120 (121)
2 cd00018 AP2 DNA-binding domain 99.8 7.1E-19 1.5E-23 129.8 7.1 59 171-230 1-61 (61)
3 smart00380 AP2 DNA-binding dom 99.7 4.4E-18 9.6E-23 127.0 7.4 61 172-233 1-63 (64)
4 PF00847 AP2: AP2 domain; Int 99.3 1.6E-11 3.4E-16 88.5 6.7 51 171-221 1-56 (56)
5 PHA00280 putative NHN endonucl 99.1 1.3E-10 2.8E-15 97.6 7.7 90 208-303 12-106 (121)
6 cd00018 AP2 DNA-binding domain 99.0 1.6E-10 3.4E-15 85.2 3.6 39 263-303 1-41 (61)
7 smart00380 AP2 DNA-binding dom 98.9 1.2E-09 2.6E-14 81.5 3.7 40 264-303 1-40 (64)
8 PF00847 AP2: AP2 domain; Int 98.3 9.8E-07 2.1E-11 63.4 4.2 41 263-303 1-45 (56)
9 PF13392 HNH_3: HNH endonuclea 96.3 0.00068 1.5E-08 47.3 -1.1 22 124-145 17-38 (46)
10 cd04518 TBP_archaea archaeal T 73.2 42 0.00092 29.9 10.1 125 170-302 33-162 (174)
11 PF14657 Integrase_AP2: AP2-li 72.2 13 0.00029 25.6 5.3 36 184-219 1-42 (46)
12 cd04517 TLF TBP-like factors ( 66.5 80 0.0017 28.1 10.3 123 172-301 35-162 (174)
13 PRK00394 transcription factor; 60.1 88 0.0019 28.0 9.5 127 170-302 32-163 (179)
14 PLN00062 TATA-box-binding prot 58.3 1.4E+02 0.003 26.8 10.7 124 170-300 33-160 (179)
15 cd00652 TBP_TLF TATA box bindi 53.9 1.3E+02 0.0027 26.8 9.3 126 170-302 33-163 (174)
16 cd04516 TBP_eukaryotes eukaryo 52.2 1.7E+02 0.0037 26.0 10.6 124 170-300 33-160 (174)
17 PF13356 DUF4102: Domain of un 47.9 59 0.0013 25.1 5.6 36 183-218 35-74 (89)
18 PHA02601 int integrase; Provis 42.7 32 0.00069 32.2 4.0 39 179-218 5-46 (333)
19 PF00352 TBP: Transcription fa 42.4 99 0.0021 23.9 6.1 48 170-218 35-82 (86)
20 PF08846 DUF1816: Domain of un 38.7 58 0.0013 25.0 4.1 32 182-213 7-40 (68)
21 PF08471 Ribonuc_red_2_N: Clas 35.9 38 0.00082 27.6 2.8 21 198-218 70-90 (93)
22 cd00801 INT_P4 Bacteriophage P 27.9 1.3E+02 0.0027 27.8 5.4 37 183-219 10-50 (357)
23 PF05036 SPOR: Sporulation rel 25.9 48 0.001 23.8 1.8 22 194-215 44-65 (76)
No 1
>PHA00280 putative NHN endonuclease
Probab=99.94 E-value=8.3e-27 Score=195.02 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=86.2
Q ss_pred Ccc-cccccccccccCCccccccCCCcccccccCCccccCCCCCCCCCCCCceeeeEeeCCCeEEEEEEeCCEEEEecCC
Q 022082 123 WID-LSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGF 201 (303)
Q Consensus 123 ~~~-~~iDhi~~~~~~n~~~Nlr~~~~~t~~~qN~~n~kk~r~~~~~~tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F 201 (303)
||. +.|||||+++.||+|+|||+ +| .+||++|.++. ++|+|||+||+|++..+||+|+|+++||+++||+|
T Consensus 26 ~P~g~~VdHidg~~~dnri~NLr~---~T-~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f 97 (121)
T PHA00280 26 IPKGYYIDHIDGNPLNDALDNLRL---AL-PKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSR 97 (121)
T ss_pred CCCCCEEEcCCCCCCCCcHHHhhh---cC-HHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCC
Confidence 554 78999999999999999998 77 88888887665 89999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHhcCCCccc
Q 022082 202 DTAHAAARAYDRAAIKFRGVDADI 225 (303)
Q Consensus 202 ~t~eeAA~AYd~Aa~~~~G~~a~~ 225 (303)
+++|+|+.||+ ++.++||+||..
T Consensus 98 ~~~e~A~~a~~-~~~~lhGeFa~~ 120 (121)
T PHA00280 98 DLLEVVAWIYR-TRRELHGQFARF 120 (121)
T ss_pred CCHHHHHHHHH-HHHHHhhccccC
Confidence 99999999997 778999998853
No 2
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.77 E-value=7.1e-19 Score=129.78 Aligned_cols=59 Identities=53% Similarity=0.862 Sum_probs=55.8
Q ss_pred CCceeeeEeeCCCeEEEEEEeC--CEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 022082 171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA 230 (303)
Q Consensus 171 SgyrGV~~~k~~gkW~A~I~~~--gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~ 230 (303)
|+|+||++++. |||+|+|+++ ||++|||+|+|+|||+.|||.|+++++|.++.+|||.+
T Consensus 1 s~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 79999998765 9999999999 99999999999999999999999999999999999863
No 3
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.74 E-value=4.4e-18 Score=127.00 Aligned_cols=61 Identities=57% Similarity=0.920 Sum_probs=57.7
Q ss_pred CceeeeEeeCCCeEEEEEEe--CCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCCcch
Q 022082 172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233 (303)
Q Consensus 172 gyrGV~~~k~~gkW~A~I~~--~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~~y~ 233 (303)
+|+||++ ++.|||+|+|++ ++|+++||+|+|+||||.|||.|+++++|.++.+|||.++|+
T Consensus 1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 5899997 466999999999 999999999999999999999999999999999999999986
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.25 E-value=1.6e-11 Score=88.55 Aligned_cols=51 Identities=33% Similarity=0.549 Sum_probs=47.2
Q ss_pred CCceeeeEeeCCCeEEEEEEeC-----CEEEEecCCCcHHHHHHHHHHHHHHhcCC
Q 022082 171 SQYRGVTFYRRTGRWESHIWDC-----GKQVYLGGFDTAHAAARAYDRAAIKFRGV 221 (303)
Q Consensus 171 SgyrGV~~~k~~gkW~A~I~~~-----gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~ 221 (303)
|+|+||+|++..++|+|+|++. +|.++||.|++++||++||+.++++++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999983 49999999999999999999999999874
No 5
>PHA00280 putative NHN endonuclease
Probab=99.14 E-value=1.3e-10 Score=97.61 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCcc---cCCC-CCcchhhHHHhhcCCHHHHHHHhhccccCcccCCCcccceeeec-CCeeeEEEce
Q 022082 208 ARAYDRAAIKFRGVDAD---INFN-LADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQ 282 (303)
Q Consensus 208 A~AYd~Aa~~~~G~~a~---~NFp-~~~y~~eL~qLrslSkEE~v~~LRr~S~g~~r~sSkYRGVs~~k-~GKW~ArIg~ 282 (303)
..+...+...++|.-.. +.+- -......+.+|+.++..+...+.+..+ .++|+|+||+|++ .+||+|+|
T Consensus 12 ~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~----~N~SG~kGV~~~k~~~kw~A~I-- 85 (121)
T PHA00280 12 PRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPK----SNTSGLKGLSWSKEREMWRGTV-- 85 (121)
T ss_pred hhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCC----CCCCCCCeeEEecCCCeEEEEE--
Confidence 34555666677775321 1111 122335789999999999998866543 7889999999984 89999999
Q ss_pred ecCCeEEEecCCCCHHHHhcC
Q 022082 283 FLGKKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 283 ~~ggK~~~LG~F~teeEAArA 303 (303)
.+++|.++||.|+++|+|+.|
T Consensus 86 ~~~gK~~~lG~f~~~e~A~~a 106 (121)
T PHA00280 86 TAEGKQHNFRSRDLLEVVAWI 106 (121)
T ss_pred EECCEEEEcCCCCCHHHHHHH
Confidence 789999999999999999864
No 6
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.04 E-value=1.6e-10 Score=85.22 Aligned_cols=39 Identities=46% Similarity=0.734 Sum_probs=35.6
Q ss_pred CcccceeeecCCeeeEEEceecC--CeEEEecCCCCHHHHhcC
Q 022082 263 SKYRGVTLHKCGRWEARMGQFLG--KKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 263 SkYRGVs~~k~GKW~ArIg~~~g--gK~~~LG~F~teeEAArA 303 (303)
|+|+||++++.|||+|+| .+. +|.++||+|+|+||||+|
T Consensus 1 s~~~GV~~~~~gkw~A~I--~~~~~gk~~~lG~f~t~eeAa~A 41 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEI--RDPSGGRRIWLGTFDTAEEAARA 41 (61)
T ss_pred CCccCEEECCCCcEEEEE--EeCCCCceEccCCCCCHHHHHHH
Confidence 689999998889999999 555 999999999999999976
No 7
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=98.90 E-value=1.2e-09 Score=81.47 Aligned_cols=40 Identities=43% Similarity=0.708 Sum_probs=35.7
Q ss_pred cccceeeecCCeeeEEEceecCCeEEEecCCCCHHHHhcC
Q 022082 264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 264 kYRGVs~~k~GKW~ArIg~~~ggK~~~LG~F~teeEAArA 303 (303)
+|+||++++.|||+|+|....++|.++||+|+|+||||.|
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~A 40 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARA 40 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHH
Confidence 5899998888999999954448999999999999999976
No 8
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=98.27 E-value=9.8e-07 Score=63.43 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=34.0
Q ss_pred Ccccceeeec-CCeeeEEEceec-C--CeEEEecCCCCHHHHhcC
Q 022082 263 SKYRGVTLHK-CGRWEARMGQFL-G--KKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 263 SkYRGVs~~k-~GKW~ArIg~~~-g--gK~~~LG~F~teeEAArA 303 (303)
|+|+||++++ .++|+|+|.... + +|.++||.|++++||++|
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~ 45 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRA 45 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHH
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHH
Confidence 6899999985 899999996421 1 499999999999999864
No 9
>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M.
Probab=96.25 E-value=0.00068 Score=47.27 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=15.6
Q ss_pred cccccccccccccCCccccccC
Q 022082 124 IDLSFDKQQQQYQNQQPQQQEG 145 (303)
Q Consensus 124 ~~~~iDhi~~~~~~n~~~Nlr~ 145 (303)
.++.|||+|+++.+|+++||+.
T Consensus 17 ~~~~v~H~~~~~~~n~~~NL~~ 38 (46)
T PF13392_consen 17 EGYVVDHKDGNKTDNRPENLRW 38 (46)
T ss_dssp TT-EEEETTS-TT---GGGEEE
T ss_pred CCCEEEeCCCCCCCCCHHHceE
Confidence 4579999999999999999998
No 10
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=73.19 E-value=42 Score=29.88 Aligned_cols=125 Identities=15% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcc----cCCCCCcchhhHHHhhcCCHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD----INFNLADYEDDMKQMKNLTKE 245 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~----~NFp~~~y~~eL~qLrslSkE 245 (303)
..+|.||.++-+.-+=.+.|+..||-+-.|. .++++|..|-++.+..+...... .+|.....-.-..--..+..+
T Consensus 33 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L~ 111 (174)
T cd04518 33 PDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNLD 111 (174)
T ss_pred CCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCHH
Confidence 4678999987777788899999999987765 68888988888887766432111 111110000000000223334
Q ss_pred HHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHhc
Q 022082 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAAR 302 (303)
Q Consensus 246 E~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAAr 302 (303)
.+...++.. .=.-..|-|+.+. ...|=.+-| +..||-+..|. .+++|+.+
T Consensus 112 ~la~~~~~~----~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~ 162 (174)
T cd04518 112 AIAIGLPNA----EYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKR 162 (174)
T ss_pred HHHhhCCCC----ccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHH
Confidence 444333311 1123579998765 456677777 88999776665 45555543
No 11
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=72.16 E-value=13 Score=25.55 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=27.9
Q ss_pred eEEEEEE-e---CC--EEEEecCCCcHHHHHHHHHHHHHHhc
Q 022082 184 RWESHIW-D---CG--KQVYLGGFDTAHAAARAYDRAAIKFR 219 (303)
Q Consensus 184 kW~A~I~-~---~g--K~~~LG~F~t~eeAA~AYd~Aa~~~~ 219 (303)
+|..+|. . .| ++++-+.|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5777773 3 34 57888999999999999988776653
No 12
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=66.46 E-value=80 Score=28.08 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=71.0
Q ss_pred CceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhc--CCCc--ccCCCCCcchhhHHHhhcCCHHHH
Q 022082 172 QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA--DINFNLADYEDDMKQMKNLTKEEF 247 (303)
Q Consensus 172 gyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~--G~~a--~~NFp~~~y~~eL~qLrslSkEE~ 247 (303)
+|.||.++-+.-+=.+.|+..||-+--| ..++++|..|.++.+..+. |... ..+|....--.-...--.+..+++
T Consensus 35 ~fpgli~R~~~Pk~t~lIF~sGKiviTG-aks~~~~~~a~~~~~~~l~~~g~~~~~~~~f~v~nIvat~~~~~~i~L~~l 113 (174)
T cd04517 35 RYPKVTMRLREPRATASVWSSGKITITG-ATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDEL 113 (174)
T ss_pred CCCEEEEEecCCcEEEEEECCCeEEEEc-cCCHHHHHHHHHHHHHHHHHcCCCcccCCceEEEEEEEEEeCCCcccHHHH
Confidence 8899998878888899999999988666 4788999999988877763 3221 122221100000000012223333
Q ss_pred HHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHh
Q 022082 248 VHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAA 301 (303)
Q Consensus 248 v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAA 301 (303)
.....+.. .=.-..|-|+.+. ...+=.+.| +..||-+..|. .+++|+.
T Consensus 114 a~~~~~~~---~YePE~fPgliyr~~~p~~t~lI--F~sGkivitGa-ks~~~~~ 162 (174)
T cd04517 114 AAKNRSSA---SYEPELHPGVVYRITGPRATLSI--FSTGSVTVTGA-RSMEDVR 162 (174)
T ss_pred HHhchhhc---EeCCccCCEEEEEECCCcEEEEE--eCCCEEEEEec-CCHHHHH
Confidence 32111111 0122478998775 345566666 88899777775 4445544
No 13
>PRK00394 transcription factor; Reviewed
Probab=60.06 E-value=88 Score=27.96 Aligned_cols=127 Identities=15% Similarity=0.218 Sum_probs=73.5
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhc--CCCc--ccCCCCCcchhhHHHhhcCCHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA--DINFNLADYEDDMKQMKNLTKE 245 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~--G~~a--~~NFp~~~y~~eL~qLrslSkE 245 (303)
..+|-|+.++-+.-+=.+.|+..||-+--|.. ++++|..|.++.+..+. |-.. ..+|.....-.-..--..+..+
T Consensus 32 Pe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa~-S~~~a~~a~~~~~~~l~~~g~~~~~~~~~~i~NiVas~~l~~~i~L~ 110 (179)
T PRK00394 32 PEQFPGLVYRLEDPKIAALIFRSGKVVCTGAK-SVEDLHEAVKIIIKKLKELGIKVIDEPEIKVQNIVASADLGVELNLN 110 (179)
T ss_pred cccCceEEEEecCCceEEEEEcCCcEEEEccC-CHHHHHHHHHHHHHHHHHcCCCccCCCceEEEEEEEEEEcCCeEcHH
Confidence 45788999888888999999999999988875 56788888877766663 3211 1111110000000000122334
Q ss_pred HHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHhc
Q 022082 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAAR 302 (303)
Q Consensus 246 E~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAAr 302 (303)
.+...+.... ..=.-..|-|+.+. ...|=.+-| +..||-+..|. .+++|+.+
T Consensus 111 ~la~~~~~~~--~~YePe~fPglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~ 163 (179)
T PRK00394 111 AIAIGLGLEN--IEYEPEQFPGLVYRLDDPKVVVLL--FGSGKLVITGA-KSEEDAEK 163 (179)
T ss_pred HHHHhcCcCC--cEECcccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHH
Confidence 4443331000 00122578998765 566777778 88999777765 45555543
No 14
>PLN00062 TATA-box-binding protein; Provisional
Probab=58.34 E-value=1.4e+02 Score=26.78 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCCCccc---CCCCCcchhhHHHhhcCCHHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADI---NFNLADYEDDMKQMKNLTKEE 246 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~---NFp~~~y~~eL~qLrslSkEE 246 (303)
...|-||.++-+.-+=.+.|+..||-+--|. .++++|..|.++.+..+....-.. ||.....-...+---.+..+.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa-ks~e~a~~a~~~~~~~L~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~ 111 (179)
T PLN00062 33 PKRFAAVIMRIREPKTTALIFASGKMVCTGA-KSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 111 (179)
T ss_pred CccCcEEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcCCCccEEEEEEEEEECCCcccHHH
Confidence 4578899988888888999999999986664 678899888888887773321122 222100000000001222233
Q ss_pred HHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHH
Q 022082 247 FVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEA 300 (303)
Q Consensus 247 ~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEA 300 (303)
+...-.... .=.-..|-|+.+. ...|=...| +..||-+..|.- +++|+
T Consensus 112 la~~~~~~~---~YePE~fPgliyr~~~pk~~~li--F~sGkvvitGak-s~~~~ 160 (179)
T PLN00062 112 LAYAHGAFS---SYEPELFPGLIYRMKQPKIVLLI--FVSGKIVITGAK-VREEI 160 (179)
T ss_pred HHHhchhhc---ccCcccCceEEEEeCCCcEEEEE--eCCCEEEEEecC-CHHHH
Confidence 322111111 0122578898765 344555556 888997777754 44444
No 15
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=53.87 E-value=1.3e+02 Score=26.76 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhc--CCCc--ccCCCCCcchhhHHHhhcCCHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA--DINFNLADYEDDMKQMKNLTKE 245 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~--G~~a--~~NFp~~~y~~eL~qLrslSkE 245 (303)
..+|.||.++...-+=.+.|+..||-+--|. .++++|..|.++.+..+. |... ..+|....--....---.+..+
T Consensus 33 Pe~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~ 111 (174)
T cd00652 33 PKRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLE 111 (174)
T ss_pred CCccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHH
Confidence 4678999988778888999999999987776 467788888888777663 3211 1222210000000001123334
Q ss_pred HHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHhc
Q 022082 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAAR 302 (303)
Q Consensus 246 E~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAAr 302 (303)
.+....+... .=.-..|-|+.+. ...+=.+-| +..||-+..|. .+++|+.+
T Consensus 112 ~la~~~~~~~---~YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~ 163 (174)
T cd00652 112 ELALKHPENA---SYEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYE 163 (174)
T ss_pred HHHhhhhccc---EECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHH
Confidence 4444333111 0122578998775 455666777 88899777775 45555543
No 16
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=52.19 E-value=1.7e+02 Score=26.00 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCCcchh---hHHHhhcCCHHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYED---DMKQMKNLTKEE 246 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~~y~~---eL~qLrslSkEE 246 (303)
..+|-||.++...-+=.+.|+..||-+--|. .++|+|..|.++.+..+....-...|+.-.... ..+.-..+..+.
T Consensus 33 Pe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa-ks~e~a~~a~~~i~~~L~~~g~~~~~~~~~v~Nivat~~l~~~i~L~~ 111 (174)
T cd04516 33 PKRFAAVIMRIREPKTTALIFSSGKMVCTGA-KSEDDSKLAARKYARIIQKLGFPAKFTDFKIQNIVGSCDVKFPIRLEG 111 (174)
T ss_pred CccCcEEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEEEEEECCCcccHHH
Confidence 4578899988888888999999999987776 467888888888877773221111332000000 000001222333
Q ss_pred HHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHH
Q 022082 247 FVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEA 300 (303)
Q Consensus 247 ~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEA 300 (303)
+....+... .=.-..|-|+.+. ...|=...| +..||-+..|. .+++|+
T Consensus 112 la~~~~~~~---~YePE~fPgliyr~~~pk~~~li--F~sGkvvitGa-ks~~~~ 160 (174)
T cd04516 112 LAHAHKQFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KSREEI 160 (174)
T ss_pred HHHhChhcc---EeCCccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHH
Confidence 332111110 0122578898765 344444555 88899777765 344443
No 17
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=47.94 E-value=59 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=25.0
Q ss_pred CeEEEEEEeCCE--EEEecCCC--cHHHHHHHHHHHHHHh
Q 022082 183 GRWESHIWDCGK--QVYLGGFD--TAHAAARAYDRAAIKF 218 (303)
Q Consensus 183 gkW~A~I~~~gK--~~~LG~F~--t~eeAA~AYd~Aa~~~ 218 (303)
..|..+...+|| ++.||.|+ |..+|......+...+
T Consensus 35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 468888888887 68899997 4666665555444444
No 18
>PHA02601 int integrase; Provisional
Probab=42.65 E-value=32 Score=32.22 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=27.8
Q ss_pred eeCCCeEEEEEEeC---CEEEEecCCCcHHHHHHHHHHHHHHh
Q 022082 179 YRRTGRWESHIWDC---GKQVYLGGFDTAHAAARAYDRAAIKF 218 (303)
Q Consensus 179 ~k~~gkW~A~I~~~---gK~~~LG~F~t~eeAA~AYd~Aa~~~ 218 (303)
.+.+|+|++++... ||++.. +|.|..||...........
T Consensus 5 ~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 5 KLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAEV 46 (333)
T ss_pred EcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence 45678999999864 776654 6999998876665554444
No 19
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=42.37 E-value=99 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHh
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKF 218 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~ 218 (303)
...|.||.+.-..-+-.+.|...||-+..|. .++++|..|.++....+
T Consensus 35 Pe~fpgl~~r~~~p~~t~~IF~sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 35 PERFPGLIYRLRNPKATVLIFSSGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTTESSEEEEETTTTEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEeecCCcEEEEEEcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3468899887777789999999999987775 67888998888776554
No 20
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=38.72 E-value=58 Score=24.99 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCeEEEEEEe--CCEEEEecCCCcHHHHHHHHHH
Q 022082 182 TGRWESHIWD--CGKQVYLGGFDTAHAAARAYDR 213 (303)
Q Consensus 182 ~gkW~A~I~~--~gK~~~LG~F~t~eeAA~AYd~ 213 (303)
.-.|-++|.- ..-.+|.|-|.|.+||..+.-.
T Consensus 7 glaWWveI~T~~P~ctYyFGPF~s~~eA~~~~~g 40 (68)
T PF08846_consen 7 GLAWWVEIETQNPNCTYYFGPFDSREEAEAALPG 40 (68)
T ss_pred CCcEEEEEEcCCCCEEEEeCCcCCHHHHHHHhcc
Confidence 4568888875 4578999999999999987543
No 21
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=35.89 E-value=38 Score=27.56 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.2
Q ss_pred ecCCCcHHHHHHHHHHHHHHh
Q 022082 198 LGGFDTAHAAARAYDRAAIKF 218 (303)
Q Consensus 198 LG~F~t~eeAA~AYd~Aa~~~ 218 (303)
-|+|+|+|+|..=||+....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 599999999999999887654
No 22
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=27.90 E-value=1.3e+02 Score=27.85 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=27.2
Q ss_pred CeEEEEEEeCCEE--EEecCCC--cHHHHHHHHHHHHHHhc
Q 022082 183 GRWESHIWDCGKQ--VYLGGFD--TAHAAARAYDRAAIKFR 219 (303)
Q Consensus 183 gkW~A~I~~~gK~--~~LG~F~--t~eeAA~AYd~Aa~~~~ 219 (303)
+.|..++..+|++ +.||.|+ +.++|..........+.
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5699999998875 6689995 67777777666555553
No 23
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=25.90 E-value=48 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 022082 194 KQVYLGGFDTAHAAARAYDRAA 215 (303)
Q Consensus 194 K~~~LG~F~t~eeAA~AYd~Aa 215 (303)
-++.+|.|.+.++|..+.....
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 3788899999999988877665
Done!