Query 022082
Match_columns 303
No_of_seqs 303 out of 1334
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 5.7E-20 1.9E-24 136.5 6.8 58 172-230 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.1 6.4E-11 2.2E-15 87.6 3.3 40 264-303 2-42 (63)
3 1u3e_M HNH homing endonuclease 99.0 9.5E-12 3.2E-16 107.9 -5.0 78 123-211 68-145 (174)
4 3igm_B PF14_0633 protein; AP2 96.7 0.0018 6.2E-08 49.2 4.4 29 168-196 3-31 (77)
5 1u3e_M HNH homing endonuclease 90.0 0.018 6E-07 49.3 -3.3 62 234-303 83-144 (174)
6 3igm_B PF14_0633 protein; AP2 70.4 4.6 0.00016 30.5 3.9 29 260-290 3-32 (77)
7 1z1b_A Integrase; protein-DNA 62.7 9.2 0.00031 34.1 5.2 42 174-218 14-55 (356)
8 3eik_A Tata-box-binding protei 49.7 55 0.0019 29.1 7.9 124 170-302 74-203 (218)
9 2z8u_A Tata-box-binding protei 46.7 76 0.0026 27.4 8.1 125 170-302 44-173 (188)
10 1mp9_A Tata-binding protein; t 40.2 62 0.0021 28.2 6.6 122 170-301 44-172 (198)
11 3jtz_A Integrase; four strande 39.8 47 0.0016 25.0 5.1 36 183-218 36-75 (88)
12 1ais_A TBP, protein (tata-bind 34.4 78 0.0027 27.1 6.2 124 170-301 40-168 (182)
13 2ftc_I Mitochondrial ribosomal 31.5 65 0.0022 25.8 4.9 38 183-220 78-115 (118)
14 3ju0_A Phage integrase; four s 24.6 94 0.0032 24.3 4.6 36 183-218 36-75 (108)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.80 E-value=5.7e-20 Score=136.53 Aligned_cols=58 Identities=48% Similarity=0.751 Sum_probs=54.3
Q ss_pred CceeeeEeeCCCeEEEEEEe---CCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 022082 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA 230 (303)
Q Consensus 172 gyrGV~~~k~~gkW~A~I~~---~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~ 230 (303)
+|+||+++ ++|||+|+|++ +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 69999974 68999999998 589999999999999999999999999999999999964
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.06 E-value=6.4e-11 Score=87.63 Aligned_cols=40 Identities=28% Similarity=0.523 Sum_probs=35.2
Q ss_pred cccceeeecCCeeeEEEceec-CCeEEEecCCCCHHHHhcC
Q 022082 264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 264 kYRGVs~~k~GKW~ArIg~~~-ggK~~~LG~F~teeEAArA 303 (303)
+|+||++++.|||+|+|.... .+++++||+|+|+||||+|
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~A 42 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA 42 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHH
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHH
Confidence 699999988999999996443 4789999999999999986
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=98.97 E-value=9.5e-12 Score=107.90 Aligned_cols=78 Identities=8% Similarity=-0.022 Sum_probs=64.0
Q ss_pred CcccccccccccccCCccccccCCCcccccccCCccccCCCCCCCCCCCCceeeeEeeCCCeEEEEEEeCCEEEEecCCC
Q 022082 123 WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFD 202 (303)
Q Consensus 123 ~~~~~iDhi~~~~~~n~~~Nlr~~~~~t~~~qN~~n~kk~r~~~~~~tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~ 202 (303)
+++++|||||+++.||+++|||+ +| .++|+.+..+. ..+ ...+||.+ +..++|.+.|.++ +.++||.|.
T Consensus 68 ~~~~~v~H~dg~k~nn~~~NL~~---~t-~~eN~~~~~~~----~~~-~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~ 136 (174)
T 1u3e_M 68 EEGLVVDHKDGNKDNNLSTNLRW---VT-QKINVENQMSR----GTL-NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYP 136 (174)
T ss_dssp CTTCEEEETTSCTTCCCGGGEEE---EC-HHHHHHHHHHH----TCC-CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEES
T ss_pred CCCCEEEcCCCCCCCCCHHHcEE---CC-HHHHhhccccc----Ccc-cceeeeee-ccCCCCceEEEEc-CCceEEeeC
Confidence 45689999999999999999998 77 77877776554 111 12578887 7778899999998 778899999
Q ss_pred cHHHHHHHH
Q 022082 203 TAHAAARAY 211 (303)
Q Consensus 203 t~eeAA~AY 211 (303)
|.+|||++|
T Consensus 137 s~~eAa~~~ 145 (174)
T 1u3e_M 137 STKCACEEL 145 (174)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999999986
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=96.65 E-value=0.0018 Score=49.22 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.9
Q ss_pred CCCCCceeeeEeeCCCeEEEEEEeCCEEE
Q 022082 168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV 196 (303)
Q Consensus 168 ~~tSgyrGV~~~k~~gkW~A~I~~~gK~~ 196 (303)
..+|||+||+|+++.+.|.|+-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46899999999999999999999998864
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=89.96 E-value=0.018 Score=49.31 Aligned_cols=62 Identities=8% Similarity=-0.043 Sum_probs=44.8
Q ss_pred hhHHHhhcCCHHHHHHHhhccccCcccCCCcccceeeecCCeeeEEEceecCCeEEEecCCCCHHHHhcC
Q 022082 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARS 303 (303)
Q Consensus 234 ~eL~qLrslSkEE~v~~LRr~S~g~~r~sSkYRGVs~~k~GKW~ArIg~~~ggK~~~LG~F~teeEAArA 303 (303)
..+.+|+-++..|......... ..+..+||.+.+.++|.+.| ... +..+||.|.|.+|||+|
T Consensus 83 n~~~NL~~~t~~eN~~~~~~~~-----~~~~~~g~~~~~~~k~~~vi--~~~-~~~~~~~f~s~~eAa~~ 144 (174)
T 1u3e_M 83 NLSTNLRWVTQKINVENQMSRG-----TLNVSKAQQIAKIKNQKPII--VIS-PDGIEKEYPSTKCACEE 144 (174)
T ss_dssp CCGGGEEEECHHHHHHHHHHHT-----CCCCHHHHHHHHHHTCCCEE--EEC-TTSCEEEESCHHHHHHH
T ss_pred CCHHHcEECCHHHHhhcccccC-----cccceeeeeeccCCCCceEE--EEc-CCceEEeeCCHHHHHHH
Confidence 4688999999999987755432 11225677663356799999 444 55689999999999974
No 6
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=70.43 E-value=4.6 Score=30.54 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=22.8
Q ss_pred cCCCcccceeeec-CCeeeEEEceecCCeEEE
Q 022082 260 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYIY 290 (303)
Q Consensus 260 r~sSkYRGVs~~k-~GKW~ArIg~~~ggK~~~ 290 (303)
..+|+|.||+|++ .+.|.|.- ..++++.+
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rrs 32 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRRS 32 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEE--EETTEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEE--ecCCeEee
Confidence 3469999999995 78999999 66777543
No 7
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=62.68 E-value=9.2 Score=34.12 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=32.1
Q ss_pred eeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHh
Q 022082 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKF 218 (303)
Q Consensus 174 rGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~ 218 (303)
.||+ .++.|.|+.+...+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3576 4678899998888999999996 8888877766655444
No 8
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=49.74 E-value=55 Score=29.12 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=77.7
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcccCCCCCcch--h---hHHHhhcCCH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE--D---DMKQMKNLTK 244 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~~NFp~~~y~--~---eL~qLrslSk 244 (303)
..+|-||.++-+.-+-.+-|+..||-+-.|. .++++|..|.++.+..+........|+ ++. . -.+---.+..
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~--~fkIqNIvas~dl~f~I~L 150 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFD--DFKIQNIVSSCDIKFSIRL 150 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCE--EEEEEEEEEEEECSSCBCH
T ss_pred CccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccc--cceEEEEEEEEECCCcCcH
Confidence 4578899888888899999999999998876 568899999988887775321122221 111 0 0000122334
Q ss_pred HHHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHhc
Q 022082 245 EEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAAR 302 (303)
Q Consensus 245 EE~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAAr 302 (303)
+.+....+.... =.-..|-|+.+. ...|=...| +..||-+..|. .+++|+..
T Consensus 151 e~la~~~~~~~~---YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~ 203 (218)
T 3eik_A 151 EGLAYAHSNYCS---YEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQ 203 (218)
T ss_dssp HHHHHHSTTTEE---CCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHH
T ss_pred HHHHHhccCCcE---ECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHH
Confidence 444433322110 112468898765 566778888 88999887776 55666654
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=46.67 E-value=76 Score=27.39 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCC-CcccCCCCCcchhh---HHHhhcCCHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV-DADINFNLADYEDD---MKQMKNLTKE 245 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~-~a~~NFp~~~y~~e---L~qLrslSkE 245 (303)
..+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+.-. +....|+.-..... ..--..+..+
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~ 122 (188)
T 2z8u_A 44 PEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLD 122 (188)
T ss_dssp -----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHH
T ss_pred CCCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHH
Confidence 45688999888888899999999999888864 5677777777766555321 11111110000000 0001233445
Q ss_pred HHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHhc
Q 022082 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAAR 302 (303)
Q Consensus 246 E~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAAr 302 (303)
.+...++... =.-..|-||.+. ...|-.+-| +..||-+..|. .+++|+..
T Consensus 123 ~la~~~~~~e----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~ 173 (188)
T 2z8u_A 123 DIALMVEGTE----YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKR 173 (188)
T ss_dssp HHHHHSTTEE----ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHH
T ss_pred HHHhhCcCcE----ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHH
Confidence 5544432211 123578998765 677888888 89999777775 45555543
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=40.21 E-value=62 Score=28.18 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcCCCcc-cCCCCCcch--hhH---HHhhcCC
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD-INFNLADYE--DDM---KQMKNLT 243 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G~~a~-~NFp~~~y~--~eL---~qLrslS 243 (303)
..+|-||..+-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+....-. ..|+ ++. ..+ .--..+.
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~--~~~I~NIVas~~l~~~i~ 120 (198)
T 1mp9_A 44 PDQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKP--KIQIQNIVASANLHVIVN 120 (198)
T ss_dssp TTTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCC--EEEEEEEEEEEECSSEEC
T ss_pred CccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcC--ceEEEEEEEEeeCCCccC
Confidence 44688999888888899999999999988875 5577888887776655321100 1111 111 000 0012233
Q ss_pred HHHHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHh
Q 022082 244 KEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAA 301 (303)
Q Consensus 244 kEE~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAA 301 (303)
.+.+...++.. .=.-..|-|+.+. ...|-.+.| +..||-+..|. .+++|+.
T Consensus 121 L~~la~~~~~~----~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~ 172 (198)
T 1mp9_A 121 LDKAAFLLENN----MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVH 172 (198)
T ss_dssp HHHHHHHSSSE----ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHH
T ss_pred HHHHHhhcCCc----EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHH
Confidence 44444443221 1123578998765 567788888 89999777775 3444443
No 11
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=39.78 E-value=47 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=28.0
Q ss_pred CeEEEEEEeCCE--EEEecCCC--cHHHHHHHHHHHHHHh
Q 022082 183 GRWESHIWDCGK--QVYLGGFD--TAHAAARAYDRAAIKF 218 (303)
Q Consensus 183 gkW~A~I~~~gK--~~~LG~F~--t~eeAA~AYd~Aa~~~ 218 (303)
..|.-+.+.+|| .+-||.|. |.++|-...+++...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 468888888887 57899997 6888887777776555
No 12
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=34.44 E-value=78 Score=27.12 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCceeeeEeeCCCeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcC--CC-c-ccCCCCCcchhhHHHhhcCCHH
Q 022082 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG--VD-A-DINFNLADYEDDMKQMKNLTKE 245 (303)
Q Consensus 170 tSgyrGV~~~k~~gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G--~~-a-~~NFp~~~y~~eL~qLrslSkE 245 (303)
..+|-||.++-+.-+-.+.|+..||-+--|. .++++|..|..+.+..+.. -. . ..+|....--.-..--..+..+
T Consensus 40 P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~ 118 (182)
T 1ais_A 40 PEEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLD 118 (182)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHH
T ss_pred CCccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHH
Confidence 4568899877777788999999999887764 6778888888887766633 21 1 0111100000000001223444
Q ss_pred HHHHHhhccccCcccCCCcccceeee-cCCeeeEEEceecCCeEEEecCCCCHHHHh
Q 022082 246 EFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAA 301 (303)
Q Consensus 246 E~v~~LRr~S~g~~r~sSkYRGVs~~-k~GKW~ArIg~~~ggK~~~LG~F~teeEAA 301 (303)
.+...++... =.-..|-|+.+. ...|-.+-| +..||-+..|. .+++|+.
T Consensus 119 ~la~~~~~~~----YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~ 168 (182)
T 1ais_A 119 VVALTLPNCE----YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAW 168 (182)
T ss_dssp HHHHHSTTEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHH
T ss_pred HHHhhCCCCE----ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHH
Confidence 4444432211 122578898765 566788888 89999777775 3444544
No 13
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=31.46 E-value=65 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=31.7
Q ss_pred CeEEEEEEeCCEEEEecCCCcHHHHHHHHHHHHHHhcC
Q 022082 183 GRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG 220 (303)
Q Consensus 183 gkW~A~I~~~gK~~~LG~F~t~eeAA~AYd~Aa~~~~G 220 (303)
.-|.|.|.....-+.++...+++.|..|...|+.+|-+
T Consensus 78 ~~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 78 DHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred cEEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 45999998877777787778899999999999988743
No 14
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=24.62 E-value=94 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.2
Q ss_pred CeEEEEEEeCCE--EEEecCCC--cHHHHHHHHHHHHHHh
Q 022082 183 GRWESHIWDCGK--QVYLGGFD--TAHAAARAYDRAAIKF 218 (303)
Q Consensus 183 gkW~A~I~~~gK--~~~LG~F~--t~eeAA~AYd~Aa~~~ 218 (303)
..|.-+.+.+|| .+-||.|+ |..+|-...+.+...+
T Consensus 36 K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 36 KYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 358888888887 47889997 6788877776665555
Done!