Query 022083
Match_columns 303
No_of_seqs 256 out of 1651
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03008 pepcterm_CAAX CAAX p 99.7 4.4E-16 9.6E-21 142.0 18.5 85 207-298 121-216 (222)
2 PF02517 Abi: CAAX protease se 99.7 1.7E-16 3.8E-21 123.5 11.2 85 203-290 4-91 (91)
3 COG1266 Predicted metal-depend 99.6 1.1E-14 2.4E-19 128.7 17.2 87 203-289 123-212 (226)
4 KOG4130 Prenyl protein proteas 98.7 1.2E-06 2.6E-11 80.5 16.0 83 210-292 135-237 (291)
5 COG4449 Predicted protease of 97.4 0.00044 9.5E-09 69.4 8.0 82 206-287 712-809 (827)
6 PF10086 DUF2324: Putative mem 85.8 20 0.00044 32.8 12.7 20 276-295 190-209 (223)
7 PF13367 PrsW-protease: Protea 75.7 54 0.0012 28.6 13.5 37 257-293 129-174 (191)
8 COG2339 prsW Membrane proteina 51.8 2.2E+02 0.0048 27.2 16.2 16 204-219 105-120 (274)
9 PF08690 GET2: GET complex sub 42.9 5.9 0.00013 38.1 -0.9 19 58-76 6-24 (302)
10 PF09512 ThiW: Thiamine-precur 38.8 1.5E+02 0.0032 25.9 7.1 22 265-286 77-98 (150)
11 TIGR02359 thiW thiW protein. L 38.4 2.7E+02 0.0059 24.3 8.9 34 257-290 72-105 (160)
12 PF04339 DUF482: Protein of un 32.9 23 0.0005 35.1 1.4 67 14-84 132-207 (370)
13 COG4377 Predicted membrane pro 32.3 4.1E+02 0.009 24.6 10.5 46 202-249 76-121 (258)
14 PF10766 DUF2592: Protein of u 29.0 80 0.0017 21.4 3.0 25 238-269 2-26 (41)
15 COG3146 Uncharacterized protei 27.9 45 0.00098 32.9 2.4 69 15-90 148-228 (387)
16 PF11712 Vma12: Endoplasmic re 25.1 3.6E+02 0.0079 22.6 7.3 13 57-69 26-38 (142)
17 PF10329 DUF2417: Region of un 20.9 6.8E+02 0.015 23.3 12.4 31 197-227 107-137 (232)
No 1
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.72 E-value=4.4e-16 Score=141.97 Aligned_cols=85 Identities=29% Similarity=0.392 Sum_probs=73.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcC
Q 022083 207 LVVAFLPGISEELLFRGALLPLFGM-----------DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSK 275 (303)
Q Consensus 207 ll~~i~~~i~EEllFRG~Ll~~l~~-----------~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~Tg 275 (303)
+..+++.|+.||++|||++++.+.+ .|.++++||++||+.|.. .+..++.|+++|++|.+||
T Consensus 121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-------~~~~~l~Gli~~~l~~~tg 193 (222)
T TIGR03008 121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-------IVAGLIAGLAYNLLLLRTG 193 (222)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhC
Confidence 4446788999999999999999853 478999999999999974 3556788999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHcc
Q 022083 276 SIVVPMASHALNNLVGGILWSYT 298 (303)
Q Consensus 276 sL~~~I~~H~l~N~v~~ll~~~~ 298 (303)
|++.+|++|+++|.+..+...++
T Consensus 194 sL~~~I~~H~~~N~ll~~~vl~~ 216 (222)
T TIGR03008 194 SIMACILAHAVTNGLLGLWVLLT 216 (222)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999987765544
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.70 E-value=1.7e-16 Score=123.50 Aligned_cols=85 Identities=31% Similarity=0.535 Sum_probs=75.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 022083 203 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV 279 (303)
Q Consensus 203 ~~~lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~TgsL~~ 279 (303)
.+..+...+.+|+.||++|||++++.+.+ ++.++++++++|++.|... .+. ++..++.|++++++|.+|||+|+
T Consensus 4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~--~~~-~~~~~~~g~~~~~~~~~t~sl~~ 80 (91)
T PF02517_consen 4 LIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPN--GPQ-FIYAFLFGLLFGYLYLRTGSLWA 80 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHcCChHH
Confidence 34556677889999999999999999876 5799999999999999985 345 78899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 022083 280 PMASHALNNLV 290 (303)
Q Consensus 280 ~I~~H~l~N~v 290 (303)
++++|+++|.+
T Consensus 81 ~i~~H~~~n~~ 91 (91)
T PF02517_consen 81 AIIAHALWNLV 91 (91)
T ss_pred HHHHHHHHHcC
Confidence 99999999973
No 3
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=128.70 Aligned_cols=87 Identities=32% Similarity=0.466 Sum_probs=76.7
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 022083 203 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV 279 (303)
Q Consensus 203 ~~~lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~TgsL~~ 279 (303)
...++...+.+|+.||++|||++++.+.+ .+.++++||++||++|..+...+..++.++.+|++++++|.||||++.
T Consensus 123 ~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~ 202 (226)
T COG1266 123 LLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 44456667888999999999999999877 578999999999999998653256788899999999999999999999
Q ss_pred HHHHHHHHHH
Q 022083 280 PMASHALNNL 289 (303)
Q Consensus 280 ~I~~H~l~N~ 289 (303)
++..|+++|.
T Consensus 203 ~i~~H~~~N~ 212 (226)
T COG1266 203 PILLHALINL 212 (226)
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.2e-06 Score=80.50 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=68.8
Q ss_pred HHhhhhHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhhcC-------cc---------hHHHHHHHHHHHHHHHH
Q 022083 210 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVFGALHLGS-------GR---------KYSFAVWATFVGFAYGY 269 (303)
Q Consensus 210 ~i~~~i~EEllFRG~Ll~~l~~----~~~ailiSsllFgl~Hl~~-------~~---------~~~~~i~~~~~Glv~g~ 269 (303)
-+++|+.||++||..+++...+ ...++...-++||+.|... ++ .--++.++.+.|..-+.
T Consensus 135 ~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaf 214 (291)
T KOG4130|consen 135 FIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAF 214 (291)
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999997755 5567888999999999732 10 12257788899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHH
Q 022083 270 ATIVSKSIVVPMASHALNNLVGG 292 (303)
Q Consensus 270 ly~~TgsL~~~I~~H~l~N~v~~ 292 (303)
++.|||++|.+|+.|+..|...+
T Consensus 215 lF~rTghl~~~iLvHAfCN~MGf 237 (291)
T KOG4130|consen 215 LFVRTGHLWCPILVHAFCNIMGF 237 (291)
T ss_pred HhhhcCCchHHHHHHHHHhhcCC
Confidence 99999999999999999998654
No 5
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=97.43 E-value=0.00044 Score=69.41 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=61.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHH--HHHHHHhhcCcc-----------hHHHHHHHHHHHHHHHH
Q 022083 206 YLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVA--TVFGALHLGSGR-----------KYSFAVWATFVGFAYGY 269 (303)
Q Consensus 206 lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSs--llFgl~Hl~~~~-----------~~~~~i~~~~~Glv~g~ 269 (303)
++-+.+.+++.||++||..+++.=+. +|..+.... ++|.++|.-+.- .+.+.....++|+-++.
T Consensus 712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv 791 (827)
T COG4449 712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV 791 (827)
T ss_pred hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence 44556788999999999999986433 665444333 489999974311 22355667789999999
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 022083 270 ATIVSKSIVVPMASHALN 287 (303)
Q Consensus 270 ly~~TgsL~~~I~~H~l~ 287 (303)
.|..|+|+|+.+.+|.+.
T Consensus 792 ty~vT~SlW~iV~lHW~v 809 (827)
T COG4449 792 TYRVTGSLWPIVLLHWAV 809 (827)
T ss_pred hHHhccchHHHHHHHHHH
Confidence 999999999999999754
No 6
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=85.79 E-value=20 Score=32.83 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 022083 276 SIVVPMASHALNNLVGGILW 295 (303)
Q Consensus 276 sL~~~I~~H~l~N~v~~ll~ 295 (303)
-+..+|++|++.|..+.+..
T Consensus 190 ~l~~AIllHaliD~~aal~q 209 (223)
T PF10086_consen 190 YLVLAILLHALIDFPAALYQ 209 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999776653
No 7
>PF13367 PrsW-protease: Protease prsW family
Probab=75.70 E-value=54 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHH
Q 022083 257 AVWATFVGFAYGYATIVS---------KSIVVPMASHALNNLVGGI 293 (303)
Q Consensus 257 ~i~~~~~Glv~g~ly~~T---------gsL~~~I~~H~l~N~v~~l 293 (303)
.....++|+.+++...+. ..+..++..|+++|.....
T Consensus 129 ~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 129 ALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444556676666666322 2467789999999998765
No 8
>COG2339 prsW Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]
Probab=51.84 E-value=2.2e+02 Score=27.15 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhHHHH
Q 022083 204 LDYLVVAFLPGISEEL 219 (303)
Q Consensus 204 ~~lll~~i~~~i~EEl 219 (303)
..++..++..|+.||.
T Consensus 105 ~~~l~~al~~G~vEE~ 120 (274)
T COG2339 105 LLFLGSALLAGLVEEP 120 (274)
T ss_pred HHHHHHHHhhhhhHHH
Confidence 4456667888999997
No 9
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=42.92 E-value=5.9 Score=38.11 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhhhhccCCc
Q 022083 58 SVKKLKRDRQLRLAEKGNG 76 (303)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~ 76 (303)
-+++|||||++.|-.+++|
T Consensus 6 EkrRLrRERReAKi~~Gga 24 (302)
T PF08690_consen 6 EKRRLRRERREAKIKAGGA 24 (302)
T ss_dssp HHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHCCCc
Confidence 3579999999999776654
No 10
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=38.80 E-value=1.5e+02 Score=25.87 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHH
Q 022083 265 FAYGYATIVSKSIVVPMASHAL 286 (303)
Q Consensus 265 lv~g~ly~~TgsL~~~I~~H~l 286 (303)
++-|++|.+++++|.+.+...+
T Consensus 77 ~laGllyr~~~k~~~a~lGEvi 98 (150)
T PF09512_consen 77 LLAGLLYRKTKKLWAAALGEVI 98 (150)
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 3344456666665555544443
No 11
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=38.43 E-value=2.7e+02 Score=24.31 Aligned_cols=34 Identities=6% Similarity=-0.158 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 022083 257 AVWATFVGFAYGYATIVSKSIVVPMASHALNNLV 290 (303)
Q Consensus 257 ~i~~~~~Glv~g~ly~~TgsL~~~I~~H~l~N~v 290 (303)
+....+.+++-|++|.++++.+.+++...+--.+
T Consensus 72 fpg~~~~a~laGliyrk~~~~~~a~~ge~igt~i 105 (160)
T TIGR02359 72 FPGGMPGALLAGLLYRFGRKHYWASLGEILGTGI 105 (160)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 3445557777777787777776665555544433
No 12
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=32.93 E-value=23 Score=35.08 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=36.0
Q ss_pred eeccCCCCCCCCchhhhhh-hhcccCC---Cccccccc---ee--ehhccchhhHHHHHHHHhhhhhccCCccccccCCC
Q 022083 14 YRASNRHPLCPDSASMRAK-FIGLHNA---GKSHNVLK---FR--MRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTE 84 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
-..|+.|.+||+......- --|.... +.--.+.. |+ ..+|+|+| .|++|||+++- .+.|++.+..+.
T Consensus 132 ~~~Ss~h~lF~~~~~~~~l~~~G~~~r~~~qf~W~N~gy~~FDdfLa~Lss~k-Rk~IRrERr~v---~~~Gi~~~~l~G 207 (370)
T PF04339_consen 132 NGLSSWHILFPDEEDAAALEEAGFLSRQGVQFHWHNRGYRSFDDFLAALSSRK-RKNIRRERRKV---AEQGIRIRTLTG 207 (370)
T ss_pred cCCCcceeecCCHHHHHHHHhCCCceecCCceEEecCCCCCHHHHHHHhchhh-HHHHHHHHHHH---HHcCCEEEEEeC
Confidence 3568899999997643321 1222211 11111111 22 44555554 56888888876 457888776543
No 13
>COG4377 Predicted membrane protein [Function unknown]
Probab=32.30 E-value=4.1e+02 Score=24.60 Aligned_cols=46 Identities=20% Similarity=0.106 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhc
Q 022083 202 EPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLG 249 (303)
Q Consensus 202 ~~~~lll~~i~~~i~EEllFRG~Ll~~l~~~~~ailiSsllFgl~Hl~ 249 (303)
+.+..+.-...++++||-- |-.+++.+.++. .--..++.||+.|..
T Consensus 76 Pl~y~IYG~lMAg~FEE~g-R~l~~rfl~kR~-~~~Ad~lAyglGHgG 121 (258)
T COG4377 76 PLIYIIYGLLMAGFFEETG-RLLFFRFLEKRS-LEKADALAYGLGHGG 121 (258)
T ss_pred CcHHHHHHHHHHHHHHHHh-HHHHHHHHHhCc-ccchhHHHHhccccc
Confidence 4455566678899999952 444444443310 011256778888864
No 14
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=29.04 E-value=80 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 022083 238 AVATVFGALHLGSGRKYSFAVWATFVGFAYGY 269 (303)
Q Consensus 238 iSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ 269 (303)
+-|+.|++...+ ++.+.++|+++|.
T Consensus 2 lkSl~fa~iMVP-------Vvma~ilglIyGl 26 (41)
T PF10766_consen 2 LKSLAFAVIMVP-------VVMALILGLIYGL 26 (41)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 346777777654 3445566666654
No 15
>COG3146 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.91 E-value=45 Score=32.88 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=40.2
Q ss_pred eccCCCCCCCCchhhhh--hhhcccCCCccccccceeehhc----------cchhhHHHHHHHHhhhhhccCCccccccC
Q 022083 15 RASNRHPLCPDSASMRA--KFIGLHNAGKSHNVLKFRMRTF----------ASKKSVKKLKRDRQLRLAEKGNGVADRSG 82 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
-.|..|..||+.--+.. +. |.- ...+..++||-+-| ++| ..|.+||||++- ..+|++.+..
T Consensus 148 glSS~Hv~F~~~~~~~~l~~~-Gfl--~r~d~qfhw~N~Gf~~fDdfL~~l~s~-kRK~irrERr~v---~~~Gi~i~~l 220 (387)
T COG3146 148 GLSSAHVTFVDEDEQPALEKA-GFL--HRLDQQFHWCNSGFQDFDDFLAALSSR-KRKNIRRERRAV---HKEGIEIQWL 220 (387)
T ss_pred CCCceeEecCCHHHHHHHHhc-cch--hhcCceEEEecCCcccHHHHHHHHHHh-HHHHHHHHHHHH---HhcCcEEEEe
Confidence 35888999998764332 11 321 12345566664333 433 345666666554 4479998887
Q ss_pred CCcccccc
Q 022083 83 TEDDYVKD 90 (303)
Q Consensus 83 ~~~~~~~~ 90 (303)
+-...+|+
T Consensus 221 ~G~~lte~ 228 (387)
T COG3146 221 TGDDLTEA 228 (387)
T ss_pred eCCcCCHH
Confidence 66665554
No 16
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.11 E-value=3.6e+02 Score=22.58 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=8.1
Q ss_pred hhHHHHHHHHhhh
Q 022083 57 KSVKKLKRDRQLR 69 (303)
Q Consensus 57 ~~~~~~~~~~~~~ 69 (303)
+...|||++.+.+
T Consensus 26 a~le~Lr~~~ee~ 38 (142)
T PF11712_consen 26 ARLERLRAEQEER 38 (142)
T ss_pred HHHHHHHHHHHHH
Confidence 3566777666555
No 17
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=20.86 E-value=6.8e+02 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=20.2
Q ss_pred HhhhchhHHHHHHHHhhhhHHHHHHHHHHHH
Q 022083 197 VLTSLEPLDYLVVAFLPGISEELLFRGALLP 227 (303)
Q Consensus 197 ~l~~l~~~~lll~~i~~~i~EEllFRG~Ll~ 227 (303)
+...+....++++...+..=+|.-|.|...-
T Consensus 107 vl~~Lllvdlilil~V~~~R~~eG~vGi~s~ 137 (232)
T PF10329_consen 107 VLAGLLLVDLILILAVPYTRHEEGWVGIASV 137 (232)
T ss_pred HHHHHHHHHHHHHHhhHhHHhHhhHhhHHHH
Confidence 3333455566666777777888888887554
Done!