Query 022083
Match_columns 303
No_of_seqs 256 out of 1651
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zs9_C Golgi to ER traffic pro 9.5 61 0.0021 20.8 -0.1 25 58-82 8-33 (38)
2 3p5n_A RIBU, riboflavin uptake 9.1 7.8E+02 0.027 20.2 8.4 18 261-278 93-110 (189)
3 3sjd_D Golgi to ER traffic pro 9.0 92 0.0031 20.7 0.6 21 56-76 16-36 (46)
4 2pv4_A Uncharacterized protein 5.9 1.9E+02 0.0065 23.7 1.1 14 56-69 120-133 (145)
5 1m46_B IQ4, IQ4 motif from MYO 5.0 3.1E+02 0.011 15.6 1.3 9 59-67 10-18 (26)
6 4g3b_A Alpha4F3D; alpha helix, 4.9 2.6E+02 0.0087 16.0 1.0 6 57-62 19-24 (26)
7 1y7w_A Halotolerant alpha-type 4.6 1.2E+02 0.0041 27.4 -1.0 15 13-27 123-137 (291)
8 3p8c_D Wiskott-aldrich syndrom 4.4 2.7E+02 0.0091 25.4 1.2 12 38-49 148-159 (279)
9 3dcg_E Virion infectivity fact 4.3 2.3E+02 0.0078 18.2 0.5 9 58-66 28-36 (39)
10 1dc1_A Bsobi restriction endon 4.3 3.9E+02 0.013 24.4 2.2 13 215-227 110-122 (323)
No 1
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=9.53 E-value=61 Score=20.83 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhhhhccCCc-cccccC
Q 022083 58 SVKKLKRDRQLRLAEKGNG-VADRSG 82 (303)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (303)
-..+++||+++.|-..+++ -+|.-+
T Consensus 8 ekaRlrRERR~aKi~~Ggas~RLnkI 33 (38)
T 3zs9_C 8 EKRRLLRERRQKKFSNGGASSRLNKI 33 (38)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3568899998887665533 334433
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=9.10 E-value=7.8e+02 Score=20.19 Aligned_cols=18 Identities=6% Similarity=-0.304 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhcCCcH
Q 022083 261 TFVGFAYGYATIVSKSIV 278 (303)
Q Consensus 261 ~~~Glv~g~ly~~TgsL~ 278 (303)
.+.|++.+++|.+.++.+
T Consensus 93 ~~~g~~~~~~y~k~~~~~ 110 (189)
T 3p5n_A 93 ASFLLTAYAIYKNKRSTK 110 (189)
T ss_dssp HHHHHHHHHHHSSSCSHH
T ss_pred HHHHHHHHHHHHhcccHH
Confidence 344555555665544443
No 3
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=8.97 E-value=92 Score=20.72 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHhhhhhccCCc
Q 022083 56 KKSVKKLKRDRQLRLAEKGNG 76 (303)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ 76 (303)
..-..+++||+++.|-..++|
T Consensus 16 a~EkaRLrRERR~aKi~~G~a 36 (46)
T 3sjd_D 16 EAEKRRLLRERRQKKFSNGGA 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHccch
Confidence 345678999998887655543
No 4
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=5.89 E-value=1.9e+02 Score=23.68 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHhhh
Q 022083 56 KKSVKKLKRDRQLR 69 (303)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (303)
+-++|||||-|+.+
T Consensus 120 Ke~vKkLKKARtdr 133 (145)
T 2pv4_A 120 KESVKKLKKARTDR 133 (145)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 44889998887765
No 5
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=5.00 E-value=3.1e+02 Score=15.64 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q 022083 59 VKKLKRDRQ 67 (303)
Q Consensus 59 ~~~~~~~~~ 67 (303)
.||.|||-.
T Consensus 10 qkkirkelk 18 (26)
T 1m46_B 10 QKKIRKELK 18 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 356665543
No 6
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=4.94 E-value=2.6e+02 Score=16.00 Aligned_cols=6 Identities=67% Similarity=0.678 Sum_probs=2.4
Q ss_pred hhHHHH
Q 022083 57 KSVKKL 62 (303)
Q Consensus 57 ~~~~~~ 62 (303)
|..||+
T Consensus 19 k~rkkl 24 (26)
T 4g3b_A 19 KXRKKL 24 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333444
No 7
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant protein, algal Ca anhydrase, salt tolerant protein, zinc enzyme; 1.86A {Dunaliella salina}
Probab=4.57 E-value=1.2e+02 Score=27.39 Aligned_cols=15 Identities=13% Similarity=-0.130 Sum_probs=12.9
Q ss_pred eeeccCCCCCCCCch
Q 022083 13 TYRASNRHPLCPDSA 27 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (303)
+|+....|+||++|.
T Consensus 123 ~Y~l~Q~HfHw~gSE 137 (291)
T 1y7w_A 123 SFVPIQFHFHHFLSE 137 (291)
T ss_dssp EEEEEEEEEEESSCS
T ss_pred eEEEEEEEEccCCcc
Confidence 799999999997664
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=4.37 E-value=2.7e+02 Score=25.37 Aligned_cols=12 Identities=8% Similarity=-0.178 Sum_probs=8.9
Q ss_pred CCCcccccccee
Q 022083 38 NAGKSHNVLKFR 49 (303)
Q Consensus 38 ~~~~~~~~~~~~ 49 (303)
-|.|+++.++|+
T Consensus 148 LK~YTDPSfFfd 159 (279)
T 3p8c_D 148 LKFYTNPSYFFD 159 (279)
T ss_dssp GGGTCCTTHHHH
T ss_pred HhcCCCcHHHHH
Confidence 467778888777
No 9
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=4.31 E-value=2.3e+02 Score=18.19 Aligned_cols=9 Identities=67% Similarity=0.940 Sum_probs=7.3
Q ss_pred hHHHHHHHH
Q 022083 58 SVKKLKRDR 66 (303)
Q Consensus 58 ~~~~~~~~~ 66 (303)
||+||.+|+
T Consensus 28 Sv~kLtEDr 36 (39)
T 3dcg_E 28 SVRKLTEDR 36 (39)
T ss_pred hhhHHhhcc
Confidence 788888876
No 10
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=4.29 E-value=3.9e+02 Score=24.40 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHH
Q 022083 215 ISEELLFRGALLP 227 (303)
Q Consensus 215 i~EEllFRG~Ll~ 227 (303)
+.||++||-.|.+
T Consensus 110 FVdELv~RfLLtr 122 (323)
T 1dc1_A 110 FIDELIFRYLLFQ 122 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6899999988776
Done!