Query 022083
Match_columns 303
No_of_seqs 256 out of 1651
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 13:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022083.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022083hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.5 3.6E+02 0.026 21.6 6.7 42 235-276 9-50 (248)
2 d2ct1a1 g.37.1.1 (A:44-71) Tra 6.8 48 0.0035 18.2 0.0 11 7-17 6-16 (28)
3 d1ppjd2 f.23.11.1 (D:196-241) 6.1 1.8E+02 0.013 17.7 2.5 22 260-281 14-35 (46)
4 d2pv4a1 a.286.1.1 (A:1-144) Un 5.8 90 0.0066 23.7 1.1 14 56-69 119-132 (144)
5 d1dc1a_ c.52.1.11 (A:) Restric 5.1 1.5E+02 0.011 25.0 2.2 14 214-227 105-118 (319)
6 d1bqua1 b.1.2.1 (A:5-99) Cytok 4.5 1.3E+02 0.0094 19.5 1.2 17 38-54 64-80 (95)
7 d1fyhb1 b.1.2.1 (B:12-109) Int 3.9 1.4E+02 0.01 19.2 1.0 16 39-54 63-78 (98)
8 d2d8ra1 g.39.1.16 (A:8-93) THA 3.9 1.2E+02 0.0086 20.1 0.5 48 5-53 6-57 (86)
9 d1q90m_ f.23.25.1 (M:) PetM su 3.8 3.8E+02 0.028 14.8 2.8 17 257-273 12-28 (34)
10 d1wm7a_ g.3.7.2 (A:) Neurotoxi 3.7 1.1E+02 0.008 16.6 0.1 11 7-17 8-18 (29)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.51 E-value=3.6e+02 Score=21.64 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 022083 235 SVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKS 276 (303)
Q Consensus 235 ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~Tgs 276 (303)
+++-+-.+|++..++....|...+..++..++.-|+|...+.
T Consensus 9 ~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~ 50 (248)
T d2r6gf1 9 GLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKA 50 (248)
T ss_dssp HHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCc
Confidence 344444556666665544555555555566666666665544
No 2
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.82 E-value=48 Score=18.16 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred ccccceeeecc
Q 022083 7 NHCSTITYRAS 17 (303)
Q Consensus 7 ~~~~~~~~~~~ 17 (303)
.||.||.-|.|
T Consensus 6 phc~tiiarks 16 (28)
T d2ct1a1 6 PHCDTVIARKS 16 (28)
T ss_dssp SSSSCEESSHH
T ss_pred Ccchhheeehh
Confidence 58999887765
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.09 E-value=1.8e+02 Score=17.68 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCCcHHHH
Q 022083 260 ATFVGFAYGYATIVSKSIVVPM 281 (303)
Q Consensus 260 ~~~~Glv~g~ly~~TgsL~~~I 281 (303)
.++++++.+..|...+.+|.++
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3456666677776666777654
No 4
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=5.82 E-value=90 Score=23.71 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHhhh
Q 022083 56 KKSVKKLKRDRQLR 69 (303)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (303)
+.++|||||-|+-+
T Consensus 119 Kd~~KqLKKAR~D~ 132 (144)
T d2pv4a1 119 KESVKKLKKARTDR 132 (144)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 44888888887755
No 5
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.14 E-value=1.5e+02 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHH
Q 022083 214 GISEELLFRGALLP 227 (303)
Q Consensus 214 ~i~EEllFRG~Ll~ 227 (303)
-+.||++||-.+.+
T Consensus 105 ~fieElv~RfLLtr 118 (319)
T d1dc1a_ 105 EFIDELIFRYLLFQ 118 (319)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 36899999987775
No 6
>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.49 E-value=1.3e+02 Score=19.53 Aligned_cols=17 Identities=0% Similarity=-0.166 Sum_probs=11.6
Q ss_pred CCCccccccceeehhcc
Q 022083 38 NAGKSHNVLKFRMRTFA 54 (303)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ 54 (303)
...+....+.|+|+|..
T Consensus 64 ~~L~~~~~Y~f~V~A~N 80 (95)
T d1bqua1 64 YSTVYFVNIEVWVEAEN 80 (95)
T ss_dssp SCCCTTSCEEEEEEEEE
T ss_pred eecCCCcEEEEEEEEEe
Confidence 34556677888888773
No 7
>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.90 E-value=1.4e+02 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=11.8
Q ss_pred CCccccccceeehhcc
Q 022083 39 AGKSHNVLKFRMRTFA 54 (303)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (303)
..+....++|||||+.
T Consensus 63 ~l~~~~~Y~fRV~A~n 78 (98)
T d1fyhb1 63 VGDPSNSLWVRVKARV 78 (98)
T ss_dssp CCSTTSCEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEc
Confidence 3445667999999983
No 8
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=1.2e+02 Score=20.13 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=25.1
Q ss_pred ccccccceeeeccCCCC-CCCCchhh---hhhhhcccCCCccccccceeehhc
Q 022083 5 AINHCSTITYRASNRHP-LCPDSASM---RAKFIGLHNAGKSHNVLKFRMRTF 53 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 53 (303)
++.-|.+-..+..++++ .||-.... =.+++|..+.. .......|-+-|
T Consensus 6 ~v~~C~~~~~~~~~~~ff~fP~d~~~~~~W~~~~~~~~~~-~~~~~~ICs~HF 57 (86)
T d2d8ra1 6 AAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFV-PGKHTFLCSKHF 57 (86)
T ss_dssp CSSSCCCSCCSSCCCCCEECCSSHHHHHHHHHHTTCTTCC-CSSSCEECTTSS
T ss_pred EcCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHhCCcccc-cCCccEEeCCcC
Confidence 45667766566666553 57865533 34566654422 222333444444
No 9
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.79 E-value=3.8e+02 Score=14.80 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022083 257 AVWATFVGFAYGYATIV 273 (303)
Q Consensus 257 ~i~~~~~Glv~g~ly~~ 273 (303)
+++..++|+..|++..|
T Consensus 12 mig~tl~glaigfvllr 28 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhee
Confidence 56666788888887766
No 10
>d1wm7a_ g.3.7.2 (A:) Neurotoxin bmp01 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=3.66 E-value=1.1e+02 Score=16.61 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.3
Q ss_pred ccccceeeecc
Q 022083 7 NHCSTITYRAS 17 (303)
Q Consensus 7 ~~~~~~~~~~~ 17 (303)
.||+|-.-||.
T Consensus 8 ehc~tq~arak 18 (29)
T d1wm7a_ 8 EHCATQNARAK 18 (29)
T ss_dssp TTTTTTTCEEE
T ss_pred HHhhhhhhhhh
Confidence 68988777764
Done!