Query 022084
Match_columns 303
No_of_seqs 171 out of 1238
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2618 Uncharacterized conser 100.0 2.1E-39 4.5E-44 306.3 10.3 150 2-152 111-264 (366)
2 COG2135 Uncharacterized conser 100.0 3.8E-39 8.2E-44 294.8 10.7 134 2-136 86-224 (226)
3 PRK09951 hypothetical protein; 100.0 1.8E-38 3.8E-43 289.6 12.8 132 2-135 84-222 (222)
4 PF02586 DUF159: Uncharacteris 100.0 1.9E-35 4.1E-40 265.0 8.1 122 2-129 81-208 (208)
5 PF09507 CDC27: DNA polymerase 66.1 1.6 3.4E-05 42.6 -0.7 17 287-303 414-430 (430)
6 PF14267 DUF4357: Domain of un 29.7 31 0.00068 25.5 1.3 25 2-26 27-52 (55)
7 PF15342 FAM212: FAM212 family 20.3 52 0.0011 25.2 1.0 25 69-93 30-57 (62)
8 PF10092 DUF2330: Uncharacteri 13.0 87 0.0019 31.3 0.8 54 84-137 137-206 (348)
9 PRK09293 fructose-1,6-bisphosp 12.2 1.1E+02 0.0024 30.1 1.3 22 71-92 299-320 (327)
10 PLN02462 sedoheptulose-1,7-bis 11.6 1.2E+02 0.0027 29.7 1.3 20 72-91 279-298 (304)
No 1
>KOG2618 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=306.33 Aligned_cols=150 Identities=44% Similarity=0.746 Sum_probs=137.0
Q ss_pred chhhHhHHhcCC----cceeeeeccCCCCceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCcccccccCc
Q 022084 2 LQMFRALLDFNL----LLRFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLHDR 77 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~~Ls~IHdR 77 (303)
+.+||..+.++| |+|||||+..+.+||||||++.||++|+|||||+.|++..|+.++||||||+.++..|+|||+|
T Consensus 111 sksfrrpl~KgRCvVl~dGfyEWkt~gskkqpYfI~f~dgRlL~mAglfD~wE~egGD~LYtfTIIT~qssk~LswlH~R 190 (366)
T KOG2618|consen 111 SKSFRRPLEKGRCVVLMDGFYEWKTVGSKKQPYFISFRDGRLLFMAGLFDYWEKEGGDDLYTFTIITAQSSKELSWLHER 190 (366)
T ss_pred hhhhhccCCCCcEEEEecceeeeeeccccCCceEEEEecCceeEeeeehheecccCCceeEEEEEEEecCchHhHHHHhh
Confidence 568999999999 9999999999999999999999999999999999999988999999999999999999999999
Q ss_pred ceEeeCCcchHhhhCCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCCcccccccccccCCCCcccccccch
Q 022084 78 MPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIPLKTEGKNPISNFFLKK 152 (303)
Q Consensus 78 MPVIL~~~ed~d~WLdp~~~~e~~~LL~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi~~k~~~k~~I~~FF~~~ 152 (303)
||+||...+.|+.|||-........|+-+|+...|.||+|+..|||.+|+||+||+||.+... ...++.||...
T Consensus 191 MPaILegees~d~WLDf~~tt~~eaLk~~yp~s~Lq~y~VTs~Vgkstn~geecikpi~l~~s-~~~~s~~~~t~ 264 (366)
T KOG2618|consen 191 MPAILEGEESWDAWLDFDKTTWVEALKPDYPESKLQFYQVTSDVGKSTNTGEECIKPILLEDS-NDMFSVKRETE 264 (366)
T ss_pred CceeecChhhHHhhhcCcccchhhhhcCCCcchheeEEEehhhhCCCCCCchhhhcccccccc-ccccccccccc
Confidence 999999889999999977654567778889999999999999999999999999999987654 34666666655
No 2
>COG2135 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.8e-39 Score=294.78 Aligned_cols=134 Identities=40% Similarity=0.725 Sum_probs=125.3
Q ss_pred chhhHhHHhcCC----cceeeeeccCCCC-ceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCcccccccC
Q 022084 2 LQMFRALLDFNL----LLRFYEWKKDGSK-KQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLHD 76 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~~~~gk-KqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~~Ls~IHd 76 (303)
+|+||.||+++| |+|||||+..+++ |+||||+++||.+|+|||||+.|....|..+.+|||||++||+.|++|||
T Consensus 86 ~~~Fr~a~~~~RCLVPadgFyEW~~~~~~~k~p~fi~~~dg~lf~fAGlw~~~~~~~~~~~~s~tilTt~an~~la~iHd 165 (226)
T COG2135 86 KRSFRAAFQSRRCLVPADGFYEWRKEPKKKKQPYFIRRKDGALFFFAGLWETWFEAGGDELESFTILTTEANDLLAPIHD 165 (226)
T ss_pred cccchhhhhcCceEEEcCcceecccCCCcCCCceEEEcCCCCeEEEEEeccccccCCCCccceEEEEEccCchhhhhhhh
Confidence 689999999999 9999999987655 99999999999999999999999877788999999999999999999999
Q ss_pred cceEeeCCcchHhhhCCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCCcccccccc
Q 022084 77 RMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIP 136 (303)
Q Consensus 77 RMPVIL~~~ed~d~WLdp~~~~e~~~LL~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi~ 136 (303)
||||||. +++++.||++....++..||+|++.+.|.+|+|++.||+++|++|+||+|+.
T Consensus 166 RmpvVL~-~e~~~~WLd~~~~~e~~~Llrp~p~~~l~~~~vs~~Vn~~~n~~~el~~p~~ 224 (226)
T COG2135 166 RMPVVLA-PEDWDAWLDPKTPPELKELLRPLPADDLSAYPVSTLVNNVKNDGPELIEPAS 224 (226)
T ss_pred cCceecC-hhHHHHhhCCCCchHHHHhccCCCccceEEEEcccccCCcccCCcccccccc
Confidence 9999998 8999999999722468899999999999999999999999999999999975
No 3
>PRK09951 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=289.61 Aligned_cols=132 Identities=30% Similarity=0.564 Sum_probs=117.2
Q ss_pred chhhHhHHhcCC----cceeeeeccCCCCceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCcccccccCc
Q 022084 2 LQMFRALLDFNL----LLRFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLHDR 77 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~~Ls~IHdR 77 (303)
||+||.+|++|| |+|||||++.+++||||||+++|+++|+|||||+.|.. .|+.+.||||||++||+.|++||||
T Consensus 84 k~~Fr~~~~~~RClIPa~GfyEW~~~~~~k~p~~i~~~d~~~l~~AGl~~~~~~-~~~~~~tftIlT~~a~~~~~~iH~R 162 (222)
T PRK09951 84 SRMFKPLWQHGRAICFADGWFEWKKEGDKKQPYFIYRADGQPIFMAAIGSTPFE-RGDEAEGFLIVTAAADQGLVDIHDR 162 (222)
T ss_pred CHhHHHHHHcCcEEEEccceEEcccCCCCccceEEEeCCCCcEEEEEecccccC-CCCeeeEEEEEeCCCCcccccccCC
Confidence 799999999999 99999999887889999999999999999999986543 4667889999999999999999999
Q ss_pred ceEeeCCcchHhhhCCCCCch-HHH--HhcCCCCCCCceEeEcCCCCCCCCCCCccccccc
Q 022084 78 MPVILGDKESSDAWLNGSSSS-KYD--TILKPYEESDLVWYPVTPAMGKLSFDGPECIKEI 135 (303)
Q Consensus 78 MPVIL~~~ed~d~WLdp~~~~-e~~--~LL~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi 135 (303)
|||||. +++++.||+++... ++. .++.+.+.+.|.+|||++.|||++|++|+||+|+
T Consensus 163 mPviL~-~~~~~~WL~~~~~~~~~~~~~~~~~~~~~~l~~~pVs~~Vn~~~~~~p~~i~p~ 222 (222)
T PRK09951 163 RPLVLS-PEAAREWMRQEISGKEASEIATSGCVPANQFTWHPVSRAVGNVKNQGAELIQPV 222 (222)
T ss_pred CceEeC-HhHHHHhcCCCCCchhhhHHhhccCCCccceEEEECCCccCCcCCCChHHhcCC
Confidence 999997 78999999997542 233 3355677789999999999999999999999985
No 4
>PF02586 DUF159: Uncharacterised ACR, COG2135; InterPro: IPR003738 This entry describes proteins of unknown function.; PDB: 2F20_A 1ZN6_A 2BDV_A 2ICU_B 2AEG_B.
Probab=100.00 E-value=1.9e-35 Score=264.96 Aligned_cols=122 Identities=40% Similarity=0.740 Sum_probs=99.6
Q ss_pred chhhHhHHhcCC----cceeeeec--cCCCCceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCccccccc
Q 022084 2 LQMFRALLDFNL----LLRFYEWK--KDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLH 75 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~--~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~~Ls~IH 75 (303)
+|+||.+|+++| |+|||||+ ..+++|+||||+++|+++|+|||||+.|.+..|+.+.+|||||++||+.|++||
T Consensus 81 k~~fr~~~~~~RClVp~~gfyEW~~~~~~~~k~py~i~~~d~~~~~~AGl~~~~~~~~~~~~~~f~ilT~~a~~~~~~iH 160 (208)
T PF02586_consen 81 KPMFRDAFKRRRCLVPADGFYEWQPKKEKGKKQPYYIHRKDGEPFALAGLWDRWRDPDGEELYSFAILTTPANPEMAPIH 160 (208)
T ss_dssp STTTHHHHCCGEEEEEESEEEEEEECCCTSSEEEEEEEETTSCCEEEEEEEEEEECTTSTCEEEEEEEEEEGCTCGCCTT
T ss_pred hhhHhheecCcEEEEEeeeEEEeeeccccCCceeEEEEcCCCCeEEEEEEeeccccccccccceEEEEecCCChhhhhcc
Confidence 799999999889 99999999 777899999999999999999999999999888779999999999999999999
Q ss_pred CcceEeeCCcchHhhhCCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCCCCc
Q 022084 76 DRMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSFDGP 129 (303)
Q Consensus 76 dRMPVIL~~~ed~d~WLdp~~~~e~~~LL~p~~~~~L~~yPVs~~VNn~rndgp 129 (303)
|||||||. +++++.||+++.......++..++.. ||++.|||++|+||
T Consensus 161 ~RmPviL~-~e~~~~WL~~~~~~~~~~~~~~~~~~-----~Vs~~Vn~~~n~~p 208 (208)
T PF02586_consen 161 DRMPVILP-PEDWDRWLDPDIPEEDALLLLLLPAE-----PVSTRVNNPRNNGP 208 (208)
T ss_dssp SEEE-EES-HHHHHHHHHTTCHHHHHHHHHC---H-----E--CGCGSCT----
T ss_pred CCeeEEEC-HHHHHHhcCCCCChHHHHHhcccCCC-----CcccccCCcccCCC
Confidence 99999997 89999999998753222222222211 99999999999997
No 5
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=66.08 E-value=1.6 Score=42.57 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=7.9
Q ss_pred cccCCCCCceeecccCC
Q 022084 287 KDAGEKQPTLFSYYSKK 303 (303)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (303)
....-||.+|.|||+||
T Consensus 414 ~~~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 414 AAKKKKQGSIMSFFKKK 430 (430)
T ss_dssp -----EE--GGGTSB--
T ss_pred CCCCCCCcchhhhccCC
Confidence 56778999999999997
No 6
>PF14267 DUF4357: Domain of unknown function (DUF4357)
Probab=29.69 E-value=31 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.4
Q ss_pred chhhHhHHhcCC-cceeeeeccCCCC
Q 022084 2 LQMFRALLDFNL-LLRFYEWKKDGSK 26 (303)
Q Consensus 2 kPsFR~af~~rR-AsGFYEW~~~~gk 26 (303)
.|+-..++-.+| ++|+.||+...|+
T Consensus 27 SPS~AA~~v~G~s~NG~~~Wk~~~G~ 52 (55)
T PF14267_consen 27 SPSAAAAVVLGRSANGWTEWKTADGK 52 (55)
T ss_pred ChHHHHHHHcCCCCCCcHhhccCCCC
Confidence 477788888888 9999999976553
No 7
>PF15342 FAM212: FAM212 family
Probab=20.35 E-value=52 Score=25.22 Aligned_cols=25 Identities=28% Similarity=0.675 Sum_probs=18.6
Q ss_pred cccccccCcceEeeCC---cchHhhhCC
Q 022084 69 AALQWLHDRMPVILGD---KESSDAWLN 93 (303)
Q Consensus 69 ~~Ls~IHdRMPVIL~~---~ed~d~WLd 93 (303)
.+|+.-.+|+|+||.+ .+.+.-|||
T Consensus 30 sLmSr~RnRQPLVLGDN~FADLV~NWlD 57 (62)
T PF15342_consen 30 SLMSRGRNRQPLVLGDNVFADLVGNWLD 57 (62)
T ss_pred HHHhccccCCCeeecccHHHHHHHhhhc
Confidence 3677778999999973 345677887
No 8
>PF10092 DUF2330: Uncharacterized protein conserved in bacteria (DUF2330); InterPro: IPR019283 Members of this family of hypothetical bacterial proteins have no known function.
Probab=13.00 E-value=87 Score=31.32 Aligned_cols=54 Identities=20% Similarity=0.452 Sum_probs=35.8
Q ss_pred CcchHhhhCCCCC---chHHHHhcCCCCCCCceEeEcCCCCCC-------------CCCCCccccccccc
Q 022084 84 DKESSDAWLNGSS---SSKYDTILKPYEESDLVWYPVTPAMGK-------------LSFDGPECIKEIPL 137 (303)
Q Consensus 84 ~~ed~d~WLdp~~---~~e~~~LL~p~~~~~L~~yPVs~~VNn-------------~rndgpecI~Pi~~ 137 (303)
+.+.+..||+.+. +..+..+|+||-...+.+.-+.=..+. .++++++.+-||.+
T Consensus 137 ds~gL~~WL~~ngY~ip~~a~~~L~pYv~~G~~Ffa~kl~~~~~~~~~~~~L~Pl~i~f~S~~~~~PiRL 206 (348)
T PF10092_consen 137 DSDGLRTWLRDNGYAIPPGAEPILDPYVRQGWKFFAAKLNPEEVDAAGVGELRPLRIRFESDEFMYPIRL 206 (348)
T ss_pred ChHHHHHHHHHcCCCCCccHHHHHHHHHHcCCEEEEEEecccccccccccccccEEEEecCCceEEEEEe
Confidence 3567899998763 356889999998888877655422222 24556666666654
No 9
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=12.23 E-value=1.1e+02 Score=30.10 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=16.7
Q ss_pred cccccCcceEeeCCcchHhhhC
Q 022084 71 LQWLHDRMPVILGDKESSDAWL 92 (303)
Q Consensus 71 Ls~IHdRMPVIL~~~ed~d~WL 92 (303)
...||+|.||+|-..++++.+.
T Consensus 299 p~~lHqr~p~~~GS~~eV~~~~ 320 (327)
T PRK09293 299 PESLHQRVPLFLGSKEEVERVE 320 (327)
T ss_pred CCccccCCCeEEeCHHHHHHHH
Confidence 3578999999997666666543
No 10
>PLN02462 sedoheptulose-1,7-bisphosphatase
Probab=11.55 E-value=1.2e+02 Score=29.68 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.7
Q ss_pred ccccCcceEeeCCcchHhhh
Q 022084 72 QWLHDRMPVILGDKESSDAW 91 (303)
Q Consensus 72 s~IHdRMPVIL~~~ed~d~W 91 (303)
..||+|.|+++-..++++.+
T Consensus 279 ~~lHqR~p~~~GS~~eV~~~ 298 (304)
T PLN02462 279 NNLDQRTQVAYGSKNEVIRF 298 (304)
T ss_pred CccccCCCeEEcCHHHHHHH
Confidence 56899999999766666654
Done!