Query 022084
Match_columns 303
No_of_seqs 171 out of 1238
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f20_A Conserved hypothetical 100.0 1.7E-41 5.9E-46 310.9 11.0 135 2-137 91-234 (240)
2 2icu_A Hypothetical protein YE 100.0 1.2E-41 4.2E-46 309.8 9.2 132 2-135 91-229 (229)
3 2bdv_A Phage-related conserved 100.0 2.1E-40 7.1E-45 302.4 8.1 129 2-137 82-225 (231)
4 2aeg_A Hypothetical protein AG 100.0 9.1E-35 3.1E-39 270.4 10.1 123 2-126 105-245 (268)
5 1zn6_A Phage-related conserved 100.0 1.7E-33 5.7E-38 255.8 10.8 115 2-120 93-221 (227)
6 3p87_G Ribonuclease H2 subunit 20.3 18 0.00062 21.9 -0.3 13 142-154 5-17 (23)
7 2b3g_B Cellular tumor antigen 14.0 22 0.00076 22.1 -1.0 15 80-95 11-25 (28)
8 1dcu_A Fructose-1,6-bisphospha 11.7 74 0.0025 30.4 1.2 19 72-90 333-351 (357)
9 3uks_A Sedoheptulose-1,7 bisph 11.2 79 0.0027 30.3 1.2 21 71-91 318-338 (347)
10 3ub6_A Chemoreceptor TLPB; hom 9.9 3.2E+02 0.011 22.7 4.5 45 3-47 105-156 (181)
No 1
>2f20_A Conserved hypothetical protein, with conserved domain; Q8A8E9_bactin, NESG, BTR8, structural genomics, PSI; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.303.1.1
Probab=100.00 E-value=1.7e-41 Score=310.88 Aligned_cols=135 Identities=30% Similarity=0.577 Sum_probs=127.8
Q ss_pred chhhHhHHhcCC----cceeeeeccCCCCceeEEEEeCCCCcEEEEEeeeeccCCC-CceeeeEEEEecCCCcccccccC
Q 022084 2 LQMFRALLDFNL----LLRFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSE-GEILYTFTILTTSSSAALQWLHD 76 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~-Ge~l~SfTIITteAn~~Ls~IHd 76 (303)
||+||.+|++|| |+|||||+..+|+||||||+++|+++|+|||||+.|.+++ |+.+.|||||||+||+.|++||+
T Consensus 91 kp~fr~~~~~~RClVPa~gfyEw~~~~g~k~p~~i~~~d~~~~~~AGlw~~w~~~~~g~~~~sftiiTt~an~~~~~iH~ 170 (240)
T 2f20_A 91 KPSFREPIMKKRCIVPSTGYFEWRHEGANKIPYYIYVKDEPIFSMAGIYDRWLDKDTGEEHETFSIITTDTNSLTDYIDN 170 (240)
T ss_dssp CTTTTTHHHHCEEEEEESEEEEEEEETTEEEEEEEEETTCSSEEEEEEEEEEECTTTCCEEEEEEEEEEECCHHHHHHST
T ss_pred chhHHHHhhCCeEEEEeceeEEcccCCCCceEEEEEcCCCCcEEEEEEeeeccCCCCCcccceEEEEEccCChhhhhccC
Confidence 699999999999 9999999998889999999999999999999999999877 88899999999999999999999
Q ss_pred ---cceEeeCCcchHhhhCCCCCc-hHHHHhcCCCCCCCceEeEcCCCCCCCCCCCccccccccc
Q 022084 77 ---RMPVILGDKESSDAWLNGSSS-SKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIPL 137 (303)
Q Consensus 77 ---RMPVIL~~~ed~d~WLdp~~~-~e~~~LL~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi~~ 137 (303)
||||||. +++++.||++... +++..||+|++.+.|.+|||++.|||++|++|+||+|+..
T Consensus 171 ~~KRmPviL~-~e~~~~WL~~~~~~~~~~~ll~p~p~~~l~~~pVs~~Vn~~~n~~p~~i~p~~~ 234 (240)
T 2f20_A 171 TKHRMPAILT-QEEEEKWLNPSLSKAEIASLLKPFDTEKMDAYVIRNDFLKKSPNDPTIVQRALE 234 (240)
T ss_dssp TTCEEECEEC-GGGHHHHTCTTCCHHHHHHTCCCCCGGGEEEEEBCGGGGGSCTTCGGGGCBCCC
T ss_pred CcceeEEEeC-HHHHHHhcCCCCcHHHHHHHcccCCCCcEEEEECCCccCCcCCCChhHhchhhh
Confidence 9999997 8999999999875 4689999999999999999999999999999999999964
No 2
>2icu_A Hypothetical protein YEDK; structural genomics, PSI, protein structure initiative, southeast collaboratory for structura genomics, secsg, riken; 1.60A {Escherichia coli}
Probab=100.00 E-value=1.2e-41 Score=309.84 Aligned_cols=132 Identities=30% Similarity=0.566 Sum_probs=116.4
Q ss_pred chhhHhHHhcCC----cceeeeeccCCCCceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCcccccccCc
Q 022084 2 LQMFRALLDFNL----LLRFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSAALQWLHDR 77 (303)
Q Consensus 2 kPsFR~af~~rR----AsGFYEW~~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~~Ls~IHdR 77 (303)
||+||.+|+++| |+|||||+..+++||||||+++|+++|+|||||+.|.+ +|+.+.|||||||+||+.|++||||
T Consensus 91 kp~fr~~~~~~RClVPa~gfyEw~~~~~~k~p~~i~~~d~~~~~~AGlw~~w~~-~g~~~~sftilTt~an~~~~~iH~R 169 (229)
T 2icu_A 91 SRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFE-RGDEAEGFLIVTAAADQGLVDIHDR 169 (229)
T ss_dssp CTTTHHHHHHCEEEEEESEEEEEC------CEEEEEETTCCCEEEEEEECSCGG-GCCSSBCEEEEEEECCGGGGGTCSE
T ss_pred chhHHhhhcCCcEEEEcceEEEcccCCCCceEEEEEecCCCcEEEEEeeecccC-CCCcCceEEEEeecCchhhhcccCc
Confidence 799999999999 99999999888899999999999999999999999876 5667789999999999999999999
Q ss_pred ceEeeCCcchHhhhCCCCCc-hHHHHhc--CCCCCCCceEeEcCCCCCCCCCCCccccccc
Q 022084 78 MPVILGDKESSDAWLNGSSS-SKYDTIL--KPYEESDLVWYPVTPAMGKLSFDGPECIKEI 135 (303)
Q Consensus 78 MPVIL~~~ed~d~WLdp~~~-~e~~~LL--~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi 135 (303)
|||||. +++++.||+++.. +++.+|| .+++.+.|.+|||++.|||++|++|+||+|+
T Consensus 170 mPviL~-~~~~~~WL~~~~~~~~a~~ll~~~~~p~~~l~~~pVs~~Vn~~~n~~p~li~p~ 229 (229)
T 2icu_A 170 RPLVLS-PEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV 229 (229)
T ss_dssp EECEEC-HHHHHHHHCTTCCHHHHHHHHHHHBCCGGGEEEEECCGGGGSTTCCCGGGGSCC
T ss_pred eeEecC-HHHHHHhcCCCCCHHHHHHHHHhcCCCcccEEEEECCCCCCCcCCCChhhhcCC
Confidence 999997 8999999998754 4577777 5778889999999999999999999999986
No 3
>2bdv_A Phage-related conserved hypothetical protein, BB2; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.20A {Bordetella bronchiseptica} SCOP: d.303.1.1
Probab=100.00 E-value=2.1e-40 Score=302.37 Aligned_cols=129 Identities=28% Similarity=0.553 Sum_probs=113.3
Q ss_pred chh-hHhHHhcCC----cceeeeec---cCCCC-ceeEEEEeCCCCcEEEEEeeeeccCC-CCceeeeEEEEecCCCccc
Q 022084 2 LQM-FRALLDFNL----LLRFYEWK---KDGSK-KQPYYVHFKDGRPLVFAALYDTWQSS-EGEILYTFTILTTSSSAAL 71 (303)
Q Consensus 2 kPs-FR~af~~rR----AsGFYEW~---~~~gk-KqPY~I~~kDg~pL~~AGLwd~W~~~-~Ge~l~SfTIITteAn~~L 71 (303)
||+ ||.+|++|| |+|||||+ ..+|+ ||||||++ +.+|+|||||+ |.++ +|+.+.|||||||+||+.|
T Consensus 82 kp~~Fr~~~~~~RClVPa~gfyEW~~~~~~~g~~k~p~~i~~--~~~~~~AGlw~-w~~~~~g~~~~sftiiTt~an~~~ 158 (231)
T 2bdv_A 82 HGWPWKLMIGTGRILVPADGWYEWKALDSGPKPAKQPYYIHG--DAPLLFAGLSA-WRRGAELDEAHGFAIVTNDALGGM 158 (231)
T ss_dssp TCTTGGGTTTTCEEEEEEEEEEEEEECSCSSSCCEEEEEEEE--EEEEEEEEEEC-CCTTCCSSGGGCEEEEECGGGCCS
T ss_pred CchhhhHHhhcCeEEEEeccEEeccccccCCCCcceEEEEEC--CCceEEEEEeE-ecCCCCCceeeeEEEEecccChhh
Confidence 688 999999989 99999999 77788 99999999 78999999999 9987 6888899999999999999
Q ss_pred ccccCcceEeeCCcchHhhhCCCCCc-----hHHHHhcCCCCCCCceEeEcCCCCCCCCCCCccccccccc
Q 022084 72 QWLHDRMPVILGDKESSDAWLNGSSS-----SKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIPL 137 (303)
Q Consensus 72 s~IHdRMPVIL~~~ed~d~WLdp~~~-----~e~~~LL~p~~~~~L~~yPVs~~VNn~rndgpecI~Pi~~ 137 (303)
++|||||||||. +++++.||++... +++ .||+| .+.|.+|||++.|||++|++|+||+|+..
T Consensus 159 ~~iH~RmPviL~-~e~~~~WL~~~~~~~~~~~~~-~ll~p--~~~l~~~pVs~~Vn~~~n~~p~li~p~~~ 225 (231)
T 2bdv_A 159 VDVHDRRPVALP-PELAREWVDPATPVARAKEIL-RAGLP--ETAFSWYPVRQEVGSSKYQLPDAVDPLLE 225 (231)
T ss_dssp SCTTSCCBCBCC-HHHHHHHHCTTSCHHHHHHHH-TCCCC--GGGCEEEECCSCSCSBTTBCCC-------
T ss_pred hcccCceeeecC-HHHHHHhcCCCCCCcchhhHH-HhcCC--cccEEEEECCCcCCCcCCCChHHhhhhhh
Confidence 999999999997 8999999999764 447 89999 67899999999999999999999999864
No 4
>2aeg_A Hypothetical protein AGR_PAT_140; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Agrobacterium tumefaciens str} SCOP: d.303.1.1
Probab=100.00 E-value=9.1e-35 Score=270.36 Aligned_cols=123 Identities=18% Similarity=0.333 Sum_probs=111.4
Q ss_pred chhhHhHH-hcCC----cceeeeecc---CCCCcee-EEEEeCCCC-cEEEEEeee-eccCC----CCc-eeeeEEEEec
Q 022084 2 LQMFRALL-DFNL----LLRFYEWKK---DGSKKQP-YYVHFKDGR-PLVFAALYD-TWQSS----EGE-ILYTFTILTT 65 (303)
Q Consensus 2 kPsFR~af-~~rR----AsGFYEW~~---~~gkKqP-Y~I~~kDg~-pL~~AGLwd-~W~~~----~Ge-~l~SfTIITt 65 (303)
+|+||.+| ++|| |+|||||.. .+|+||| |||+++|++ +|+|||||+ .|.++ +|+ .+.|||||||
T Consensus 105 kp~fr~a~~~~~RCLVPa~GFyEW~~~~~~~g~K~P~~~i~~~d~~pl~~~AGLw~~~w~~~~~~~~g~~~~~sftIiTt 184 (268)
T 2aeg_A 105 LPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTT 184 (268)
T ss_dssp CGGGGGGCSGGGEEEEEESEEEEECTTSCCTTSCCCEEEEESSTTCCCEEEEEEEEEEEEECSSGGGCSEEEEEEEEEEE
T ss_pred ChHHHHHHhhCCeEEEEccEEEeecCccCCCCCcCccEEEEecCCCceEEEEEEeeccccccccccccccccceEEEEeC
Confidence 68999999 6888 999999998 6789999 999999998 699999999 99876 466 4899999999
Q ss_pred CCCcccccccC-cceEee-CCcchHhhhCCCCCchHHHHhcCCCCCCCceEeEcCCCCCCCCC
Q 022084 66 SSSAALQWLHD-RMPVIL-GDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPAMGKLSF 126 (303)
Q Consensus 66 eAn~~Ls~IHd-RMPVIL-~~~ed~d~WLdp~~~~e~~~LL~p~~~~~L~~yPVs~~VNn~rn 126 (303)
+||+.|++||+ |||||| . +++++.||+++. +++..||+|++.+.|.+|||++.||++.+
T Consensus 185 ~an~~~~~iH~kRMPVIL~~-~e~~~~WL~~~~-~~~~~Ll~p~p~~~l~~~pV~~~v~~~~~ 245 (268)
T 2aeg_A 185 DPNDLVKPIHEKAMPVLLLT-REETEIWMRAPW-DEAKHLARPLPNDALIILSREPYGSSIVS 245 (268)
T ss_dssp CCCTTTTTTCSSCEECEECS-HHHHHHHHHSCH-HHHGGGCSCCCTTSCEEEEEECTTCCCC-
T ss_pred CchHhhhhhCCCceeEEeCC-HHHHHHHcCCCh-HHHHHHcCCCCCccEEEEECCccCCCCcc
Confidence 99999999999 999999 6 799999999854 46899999999999999999999998877
No 5
>1zn6_A Phage-related conserved hypothetical protein; novel, structural genomics, PSI; 1.80A {Bordetella bronchiseptica} SCOP: d.303.1.1
Probab=100.00 E-value=1.7e-33 Score=255.81 Aligned_cols=115 Identities=30% Similarity=0.474 Sum_probs=106.2
Q ss_pred chhhHhHHhc-CC----cceeee--eccCCCCceeEEEEeCCCCcEEEEEeeeeccCCCCceeeeEEEEecCCCc--ccc
Q 022084 2 LQMFRALLDF-NL----LLRFYE--WKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTTSSSA--ALQ 72 (303)
Q Consensus 2 kPsFR~af~~-rR----AsGFYE--W~~~~gkKqPY~I~~kDg~pL~~AGLwd~W~~~~Ge~l~SfTIITteAn~--~Ls 72 (303)
||+||.+|++ || |+|||| |.. |+||||||+++|+++|+|||||+.|.+++|+.+.|||||||+||. .|+
T Consensus 93 kp~Fr~a~~~~~RClVPa~gFyE~~w~~--g~k~p~~i~~~d~~~l~~AGLw~~w~~~~g~~~~sftiiTt~an~~~~~~ 170 (227)
T 1zn6_A 93 LWTFRNAWAKAQHCIIPADAIYEPDWRS--GKAVPTRFTRADGAPLGIAGLWDRYRNAAGEWIDSYTMLTINADDDPLFR 170 (227)
T ss_dssp STTTHHHHHTTCEEEEEEEEEEEEECTT--SSCEEEEEEETTSCCEEEEEEEEEEECTTSCEEEEEEEEEEECTTCTTGG
T ss_pred CchHHHHHhhCceEEEEeceeEeecccC--CCccceEEecCCCCcEEEEEEeeeccCCCCCeeeEEEEEeccCCCCchhh
Confidence 7999999998 78 999999 765 689999999999999999999999999888889999999999997 999
Q ss_pred cccC-----cceEeeCCcchHhhhCCCCCchHHHHhcCCCCCCCceEeEcCCC
Q 022084 73 WLHD-----RMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPA 120 (303)
Q Consensus 73 ~IHd-----RMPVIL~~~ed~d~WLdp~~~~e~~~LL~p~~~~~L~~yPVs~~ 120 (303)
+||+ ||||||. +++++.||++... ++..||+|++.+.|.+|||+..
T Consensus 171 ~iH~p~~~~RmPviL~-~e~~~~WL~~~~~-~~~~ll~p~p~~~l~~~pV~~~ 221 (227)
T 1zn6_A 171 DYHQAGKEKRMVVILP-DGAYGDWLTAPAT-DTRDFLLPYPADRLVAAAVKLE 221 (227)
T ss_dssp GCSCTTSCCEEECBCC-GGGHHHHHHCCGG-GHHHHCCCCCGGGEEEEECCC-
T ss_pred hccCCCCCceeeEEeC-HHHHHHHcCCChH-HHHHHcccCCccccEEEECCHH
Confidence 9998 9999997 8999999999764 5899999999999999999864
No 6
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=20.29 E-value=18 Score=21.85 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.5
Q ss_pred CCcccccccchhh
Q 022084 142 KNPISNFFLKKEI 154 (303)
Q Consensus 142 k~~I~~FF~~~~~ 154 (303)
=++|++||..+++
T Consensus 5 MKSI~sFF~~k~k 17 (23)
T 3p87_G 5 MKSIDTFFGVKNK 17 (26)
T ss_pred chhHHHHhccccc
Confidence 3689999999855
No 7
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=13.95 E-value=22 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.632 Sum_probs=11.2
Q ss_pred EeeCCcchHhhhCCCC
Q 022084 80 VILGDKESSDAWLNGS 95 (303)
Q Consensus 80 VIL~~~ed~d~WLdp~ 95 (303)
++|. +++++.||..+
T Consensus 11 lmls-pddi~qw~s~d 25 (28)
T 2b3g_B 11 LMLS-PDDIEQWFTED 25 (28)
T ss_dssp GGCC-HHHHHHHHHC-
T ss_pred hhcC-hHHHHHHhhcC
Confidence 4676 78999999754
No 8
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=11.68 E-value=74 Score=30.41 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=15.1
Q ss_pred ccccCcceEeeCCcchHhh
Q 022084 72 QWLHDRMPVILGDKESSDA 90 (303)
Q Consensus 72 s~IHdRMPVIL~~~ed~d~ 90 (303)
..||+|.||+|-..++++.
T Consensus 333 ~~lHqR~p~~~GS~~eV~~ 351 (357)
T 1dcu_A 333 TEIHQRVPLYIGSTEEVEK 351 (357)
T ss_dssp CSTTCBCCEEEECHHHHHH
T ss_pred CcccccCCeEEeCHHHHHH
Confidence 5689999999976666654
No 9
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.85A {Toxoplasma gondii}
Probab=11.16 E-value=79 Score=30.29 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=16.0
Q ss_pred cccccCcceEeeCCcchHhhh
Q 022084 71 LQWLHDRMPVILGDKESSDAW 91 (303)
Q Consensus 71 Ls~IHdRMPVIL~~~ed~d~W 91 (303)
...||+|.||+|-..++++..
T Consensus 318 P~~lHqR~p~~~GS~~eV~~~ 338 (347)
T 3uks_A 318 IEHMDHRSALCCGSADEIKRM 338 (347)
T ss_dssp CCSTTCBCCEEEECHHHHHHH
T ss_pred CCccccCCCeEEeCHHHHHHH
Confidence 356899999999766766654
No 10
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=9.89 E-value=3.2e+02 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=26.2
Q ss_pred hhhHhHHhcCC-ccee--eeeccCCC----CceeEEEEeCCCCcEEEEEeee
Q 022084 3 QMFRALLDFNL-LLRF--YEWKKDGS----KKQPYYVHFKDGRPLVFAALYD 47 (303)
Q Consensus 3 PsFR~af~~rR-AsGF--YEW~~~~g----kKqPY~I~~kDg~pL~~AGLwd 47 (303)
+.|+.++..-| -.|| |.|...+. .|.-|....+....+..+|+|-
T Consensus 105 ~~~~~~~~~a~~g~G~v~Y~w~~p~~~~~~~Klsyv~~~~~w~W~IgtG~y~ 156 (181)
T 3ub6_A 105 YYVRGYLEAAKKGGGYTYYKMPKYDGGVPEKKFAYSHYDEVSQMVIAATSYY 156 (181)
T ss_dssp CHHHHHHHHHHTTSEEEEEEECSSTTSCCEEEEEEEEEETTTTEEEEEEEEH
T ss_pred HHHHHHHHHHhcCCcEEEEEeccCCCCCccceEEEEEEECCCCEEEEEeeEH
Confidence 34555554322 2466 56775432 2455666667777778888884
Done!