BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022086
         (303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TAC|B Chain B, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
          Length = 334

 Score = 32.3 bits (72), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)

Query: 195 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 240
           ++ +RK L     DGPT+ AWL   +G+PA +         + A +  +    I R IG+
Sbjct: 27  EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86

Query: 241 FIFKSMWMMRLAFAIAVSAHVS 262
               S  + RL   +A+   VS
Sbjct: 87  ----SNPLHRLKLRLAIQEMVS 104


>pdb|3TAD|A Chain A, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
 pdb|3TAD|B Chain B, Crystal Structure Of The Liprin-AlphaLIPRIN-Beta Complex
          Length = 297

 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 18/82 (21%)

Query: 195 QDRKRKSL-----DGPTIYAWLFCLIGLPALF---------ATAYLPDIGPVPILRTIGL 240
           ++ +RK L     DGPT+ AWL   +G+PA +         + A +  +    I R IG+
Sbjct: 27  EEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI 86

Query: 241 FIFKSMWMMRLAFAIAVSAHVS 262
               S  + RL   +A+   VS
Sbjct: 87  ----SNPLHRLKLRLAIQEMVS 104


>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
           O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
           A Novel Iron-Sulfur Cluster
          Length = 603

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 138 LYPWLNRWWLPQPLILPAEVYKVGVTHYFSLLKAKDE 174
           L P++N +W  +  +LP E   + VTHY   L  + E
Sbjct: 179 LGPFMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKE 215


>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
           In Complex With S-Adensyl-L-Methionine (Sam)
 pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
           In Complex With S-Adensyl-L-Homocystein (Sah)
          Length = 374

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 37  KLGLVPFKIGEPSVKTDWIYVDNLVLALILASMGLLDDIPGQKGRPIAS---GQPY---F 90
           +LG++    G P+ +  W+ ++  V    LA  GLLD +  + GRP  +   G+P+    
Sbjct: 93  RLGML-LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVV--RTGRPAYAGRYGRPFWEDL 149

Query: 91  VSDGFPINTFEFIGPLLKTLDYDLPK---SWLAVPHALFLG 128
            +D    ++F+ +    + L Y+ P     W AV H L +G
Sbjct: 150 SADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVG 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,486,586
Number of Sequences: 62578
Number of extensions: 404377
Number of successful extensions: 929
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)