Query 022088
Match_columns 303
No_of_seqs 162 out of 1504
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.3E-55 2.8E-60 398.3 29.3 259 11-288 36-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.7E-55 5.9E-60 389.3 27.3 269 11-290 47-330 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 7.6E-55 1.6E-59 379.7 25.2 231 10-288 30-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 5.9E-52 1.3E-56 376.7 28.0 262 11-283 32-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.3E-51 2.9E-56 378.3 28.4 274 11-294 46-341 (346)
6 PRK10625 tas putative aldo-ket 100.0 1.7E-50 3.6E-55 371.5 29.8 262 11-286 33-340 (346)
7 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.8E-50 1.5E-54 354.7 26.7 228 11-288 19-255 (267)
8 PF00248 Aldo_ket_red: Aldo/ke 100.0 5E-50 1.1E-54 358.8 24.1 251 11-284 20-282 (283)
9 PLN02587 L-galactose dehydroge 100.0 2.9E-49 6.3E-54 358.7 28.5 251 11-289 34-304 (314)
10 KOG1577 Aldo/keto reductase fa 100.0 3.6E-49 7.8E-54 344.1 22.8 233 11-288 31-288 (300)
11 cd06660 Aldo_ket_red Aldo-keto 100.0 5.8E-48 1.3E-52 345.7 27.8 242 10-282 31-284 (285)
12 PRK10376 putative oxidoreducta 100.0 4.6E-47 9.9E-52 340.5 25.3 232 11-286 43-289 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 5.8E-47 1.3E-51 337.1 25.4 227 11-286 31-263 (275)
14 PRK14863 bifunctional regulato 100.0 6.7E-47 1.5E-51 339.0 23.0 248 11-293 35-290 (292)
15 COG4989 Predicted oxidoreducta 100.0 1.4E-44 3.1E-49 302.9 21.9 239 11-285 34-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 7.4E-40 1.6E-44 288.8 20.1 232 11-289 37-289 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.8E-38 3.9E-43 268.1 23.1 256 11-294 57-333 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 2.3E-05 4.9E-10 66.5 6.7 72 96-168 155-227 (285)
19 PF07021 MetW: Methionine bios 92.0 1.1 2.3E-05 37.6 8.1 152 9-174 2-172 (193)
20 TIGR01290 nifB nitrogenase cof 87.4 11 0.00024 36.0 12.2 112 59-174 59-200 (442)
21 cd03174 DRE_TIM_metallolyase D 84.1 9.2 0.0002 33.4 9.4 106 59-168 15-135 (265)
22 PRK05692 hydroxymethylglutaryl 83.3 34 0.00073 30.7 14.0 109 60-171 23-143 (287)
23 COG1748 LYS9 Saccharopine dehy 83.0 2 4.4E-05 40.1 4.8 81 8-92 79-159 (389)
24 COG1140 NarY Nitrate reductase 82.9 0.81 1.7E-05 42.0 2.1 55 109-163 263-317 (513)
25 PRK10558 alpha-dehydro-beta-de 81.4 19 0.0004 31.7 10.1 67 103-170 10-78 (256)
26 cd03319 L-Ala-DL-Glu_epimerase 79.6 47 0.001 30.0 12.5 142 12-173 140-291 (316)
27 TIGR00126 deoC deoxyribose-pho 79.0 21 0.00045 30.5 9.3 93 12-109 22-114 (211)
28 COG2102 Predicted ATPases of P 78.7 6.8 0.00015 33.5 6.1 98 96-233 75-177 (223)
29 PRK08392 hypothetical protein; 77.2 44 0.00096 28.3 13.4 139 11-165 17-178 (215)
30 TIGR03239 GarL 2-dehydro-3-deo 75.6 36 0.00077 29.8 10.1 62 108-170 8-71 (249)
31 PLN02746 hydroxymethylglutaryl 71.9 84 0.0018 29.1 13.2 104 60-168 65-182 (347)
32 PRK07945 hypothetical protein; 71.7 82 0.0018 28.9 12.7 82 78-165 191-288 (335)
33 PRK10128 2-keto-3-deoxy-L-rham 71.6 62 0.0014 28.7 10.6 66 103-169 9-76 (267)
34 cd04728 ThiG Thiazole synthase 71.3 70 0.0015 28.0 13.0 111 54-167 67-181 (248)
35 PRK07328 histidinol-phosphatas 70.3 76 0.0016 27.9 13.5 99 66-165 94-225 (269)
36 PRK13958 N-(5'-phosphoribosyl) 69.4 16 0.00034 31.1 6.2 67 73-143 17-84 (207)
37 PRK00208 thiG thiazole synthas 69.4 79 0.0017 27.7 13.1 111 54-167 67-181 (250)
38 COG1751 Uncharacterized conser 68.5 61 0.0013 26.1 9.7 88 84-173 2-95 (186)
39 PRK00507 deoxyribose-phosphate 67.7 49 0.0011 28.4 8.9 92 12-108 26-117 (221)
40 TIGR01182 eda Entner-Doudoroff 67.6 25 0.00054 29.9 7.0 88 61-166 18-106 (204)
41 PRK06015 keto-hydroxyglutarate 67.0 23 0.0005 30.0 6.6 87 61-165 14-101 (201)
42 cd07944 DRE_TIM_HOA_like 4-hyd 66.8 91 0.002 27.5 14.1 104 59-167 16-128 (266)
43 COG0135 TrpF Phosphoribosylant 66.5 47 0.001 28.3 8.4 86 74-170 19-107 (208)
44 PF02401 LYTB: LytB protein; 64.3 24 0.00053 31.5 6.6 44 219-265 225-274 (281)
45 cd00959 DeoC 2-deoxyribose-5-p 64.0 87 0.0019 26.3 14.4 129 12-145 21-157 (203)
46 PRK01045 ispH 4-hydroxy-3-meth 63.6 1.1E+02 0.0025 27.5 13.3 44 219-265 226-275 (298)
47 PF01081 Aldolase: KDPG and KH 63.5 29 0.00062 29.3 6.5 87 62-166 19-106 (196)
48 TIGR00216 ispH_lytB (E)-4-hydr 63.2 1.1E+02 0.0024 27.3 11.7 44 219-265 224-273 (280)
49 PRK00730 rnpA ribonuclease P; 63.1 43 0.00092 26.5 7.0 62 44-109 47-110 (138)
50 PRK04452 acetyl-CoA decarbonyl 62.6 1.2E+02 0.0027 27.6 12.4 92 74-170 86-184 (319)
51 TIGR02311 HpaI 2,4-dihydroxyhe 62.2 1.1E+02 0.0023 26.8 10.2 65 105-169 5-70 (249)
52 COG2022 ThiG Uncharacterized e 61.9 40 0.00088 29.2 7.1 74 57-131 77-150 (262)
53 PRK05414 urocanate hydratase; 61.8 27 0.00059 33.7 6.6 118 10-142 114-267 (556)
54 COG2355 Zn-dependent dipeptida 61.7 88 0.0019 28.4 9.6 63 214-282 237-300 (313)
55 PRK13796 GTPase YqeH; Provisio 61.6 74 0.0016 29.5 9.6 83 46-130 99-181 (365)
56 TIGR01228 hutU urocanate hydra 61.3 28 0.0006 33.5 6.6 63 72-142 194-258 (545)
57 cd00423 Pterin_binding Pterin 60.8 83 0.0018 27.6 9.4 103 60-169 21-128 (258)
58 PRK01222 N-(5'-phosphoribosyl) 60.5 59 0.0013 27.6 8.1 66 74-143 20-86 (210)
59 PLN02363 phosphoribosylanthran 60.1 30 0.00065 30.5 6.3 75 61-143 56-131 (256)
60 PRK08609 hypothetical protein; 59.0 1.5E+02 0.0033 29.4 11.7 87 71-165 424-522 (570)
61 TIGR01496 DHPS dihydropteroate 58.3 1.3E+02 0.0028 26.4 10.9 101 60-168 20-125 (257)
62 PF00809 Pterin_bind: Pterin b 57.8 30 0.00065 29.4 5.8 93 73-170 28-125 (210)
63 PF03102 NeuB: NeuB family; I 57.0 66 0.0014 28.0 7.9 68 46-123 115-183 (241)
64 PRK06552 keto-hydroxyglutarate 56.8 45 0.00097 28.5 6.7 88 61-166 23-114 (213)
65 PRK09856 fructoselysine 3-epim 55.9 1.1E+02 0.0024 26.6 9.5 21 151-171 93-113 (275)
66 COG4130 Predicted sugar epimer 55.8 1.1E+02 0.0025 26.2 8.6 82 121-231 50-137 (272)
67 TIGR00381 cdhD CO dehydrogenas 55.0 1.9E+02 0.004 27.2 11.8 105 63-174 128-253 (389)
68 PRK05283 deoxyribose-phosphate 53.6 96 0.0021 27.4 8.3 95 12-108 30-126 (257)
69 TIGR01378 thi_PPkinase thiamin 53.5 1.3E+02 0.0029 25.2 9.1 39 230-268 72-110 (203)
70 COG0052 RpsB Ribosomal protein 53.2 1.6E+02 0.0034 25.8 10.5 125 20-168 36-186 (252)
71 TIGR03822 AblA_like_2 lysine-2 52.3 1.8E+02 0.004 26.4 13.0 93 81-174 137-240 (321)
72 cd07943 DRE_TIM_HOA 4-hydroxy- 52.2 1E+02 0.0022 27.0 8.6 104 60-167 19-131 (263)
73 PRK00087 4-hydroxy-3-methylbut 52.0 2.7E+02 0.0058 28.1 12.4 43 219-264 222-270 (647)
74 PF07994 NAD_binding_5: Myo-in 51.6 85 0.0018 28.3 7.9 140 62-254 131-278 (295)
75 PRK13753 dihydropteroate synth 51.4 1.8E+02 0.0039 26.0 10.1 102 60-170 22-128 (279)
76 COG2987 HutU Urocanate hydrata 51.3 30 0.00066 32.8 5.0 57 74-138 205-261 (561)
77 cd03315 MLE_like Muconate lact 50.9 59 0.0013 28.5 6.8 103 59-173 139-243 (265)
78 cd01948 EAL EAL domain. This d 50.6 1.2E+02 0.0026 25.4 8.6 117 46-168 83-209 (240)
79 PF11242 DUF2774: Protein of u 50.3 23 0.0005 23.7 3.0 24 219-242 14-37 (63)
80 cd00308 enolase_like Enolase-s 50.1 1.2E+02 0.0027 25.7 8.6 87 81-173 120-208 (229)
81 PF00682 HMGL-like: HMGL-like 49.4 1.5E+02 0.0034 25.2 9.1 98 60-164 11-124 (237)
82 cd07939 DRE_TIM_NifV Streptomy 49.2 1.8E+02 0.0039 25.4 15.3 99 59-165 16-127 (259)
83 TIGR03597 GTPase_YqeH ribosome 48.5 1.5E+02 0.0032 27.4 9.3 83 46-130 93-175 (360)
84 cd03322 rpsA The starvation se 48.4 82 0.0018 29.1 7.6 70 99-169 202-273 (361)
85 PRK04390 rnpA ribonuclease P; 48.4 1.1E+02 0.0024 23.4 7.1 65 43-109 44-110 (120)
86 PRK03031 rnpA ribonuclease P; 47.9 1.1E+02 0.0023 23.5 7.0 64 44-109 48-114 (122)
87 PRK13352 thiamine biosynthesis 47.6 2.5E+02 0.0055 26.6 14.2 93 59-177 139-231 (431)
88 COG0325 Predicted enzyme with 47.5 1.9E+02 0.004 25.0 9.7 109 8-119 36-162 (228)
89 PRK09058 coproporphyrinogen II 47.3 1.7E+02 0.0036 28.1 9.7 74 9-88 161-254 (449)
90 PRK12558 glutamyl-tRNA synthet 47.2 1.4E+02 0.0029 28.7 8.9 97 20-129 12-108 (445)
91 PRK08195 4-hyroxy-2-oxovalerat 47.1 1.9E+02 0.0042 26.5 9.7 102 59-167 21-134 (337)
92 PRK01313 rnpA ribonuclease P; 46.8 1.1E+02 0.0024 23.8 6.9 62 44-108 48-113 (129)
93 cd07948 DRE_TIM_HCS Saccharomy 46.6 2.1E+02 0.0044 25.2 13.1 102 59-168 18-132 (262)
94 PF01175 Urocanase: Urocanase; 46.3 53 0.0011 31.8 5.9 119 9-142 103-257 (546)
95 PRK07535 methyltetrahydrofolat 46.2 2.1E+02 0.0045 25.2 11.8 100 61-169 23-124 (261)
96 cd03316 MR_like Mandelate race 46.0 83 0.0018 28.8 7.3 82 82-169 216-299 (357)
97 PRK14461 ribosomal RNA large s 45.7 2.6E+02 0.0056 26.1 10.9 89 84-172 232-352 (371)
98 PRK12360 4-hydroxy-3-methylbut 45.7 2.2E+02 0.0049 25.4 12.8 44 219-265 225-274 (281)
99 COG0761 lytB 4-Hydroxy-3-methy 45.6 2.3E+02 0.0049 25.5 10.4 45 219-266 228-278 (294)
100 PRK03459 rnpA ribonuclease P; 45.1 1.1E+02 0.0024 23.5 6.7 64 43-109 48-114 (122)
101 TIGR00190 thiC thiamine biosyn 44.9 2.8E+02 0.006 26.3 14.1 92 59-176 136-227 (423)
102 COG3830 ACT domain-containing 44.8 96 0.0021 22.6 5.7 54 15-79 22-75 (90)
103 PRK01492 rnpA ribonuclease P; 44.6 1.3E+02 0.0028 23.0 7.0 62 44-107 47-114 (118)
104 PRK07114 keto-hydroxyglutarate 44.3 2.1E+02 0.0045 24.6 9.6 90 61-165 25-116 (222)
105 PRK06424 transcription factor; 43.5 1.4E+02 0.0031 23.8 7.2 60 214-273 82-141 (144)
106 TIGR03070 couple_hipB transcri 42.1 33 0.00071 21.7 2.9 24 219-242 5-28 (58)
107 TIGR02370 pyl_corrinoid methyl 41.8 1.9E+02 0.0042 24.1 8.3 143 11-162 15-164 (197)
108 PRK00499 rnpA ribonuclease P; 41.5 1.5E+02 0.0032 22.4 6.9 64 43-109 38-104 (114)
109 cd00739 DHPS DHPS subgroup of 41.0 2.5E+02 0.0054 24.6 12.2 102 60-168 21-127 (257)
110 CHL00162 thiG thiamin biosynth 40.3 1.3E+02 0.0029 26.5 7.0 58 55-112 76-139 (267)
111 TIGR02660 nifV_homocitr homoci 40.1 3.1E+02 0.0067 25.4 10.7 99 59-165 19-130 (365)
112 PF13378 MR_MLE_C: Enolase C-t 40.0 44 0.00096 24.8 3.7 54 118-173 3-57 (111)
113 KOG3131 Uncharacterized conser 39.9 2.1E+02 0.0045 25.1 7.9 110 46-172 27-150 (281)
114 PRK09726 antitoxin HipB; Provi 39.9 68 0.0015 22.9 4.6 57 217-273 13-69 (88)
115 PF14502 HTH_41: Helix-turn-he 39.2 27 0.00059 22.2 2.0 30 218-247 6-37 (48)
116 TIGR02026 BchE magnesium-proto 39.0 3.7E+02 0.008 26.0 12.0 70 96-167 224-303 (497)
117 PRK10200 putative racemase; Pr 38.9 2.5E+02 0.0055 24.1 8.7 69 61-130 15-94 (230)
118 PF07287 DUF1446: Protein of u 38.6 1.4E+02 0.003 27.8 7.4 68 98-168 10-78 (362)
119 PF01791 DeoC: DeoC/LacD famil 38.5 1.3E+02 0.0029 25.8 7.0 93 12-109 23-120 (236)
120 cd03325 D-galactonate_dehydrat 38.2 1.9E+02 0.0041 26.6 8.3 69 99-168 215-285 (352)
121 PRK02866 cyanate hydratase; Va 38.0 69 0.0015 25.7 4.5 63 219-283 8-70 (147)
122 TIGR03217 4OH_2_O_val_ald 4-hy 37.7 3.2E+02 0.007 25.0 14.2 103 59-167 20-133 (333)
123 TIGR00188 rnpA ribonuclease P 37.5 1.7E+02 0.0037 21.7 7.0 62 43-107 41-104 (105)
124 TIGR01928 menC_lowGC/arch o-su 37.5 1.1E+02 0.0025 27.7 6.7 87 82-174 199-287 (324)
125 cd03323 D-glucarate_dehydratas 37.2 1.9E+02 0.0041 27.1 8.2 70 100-170 250-321 (395)
126 PF14871 GHL6: Hypothetical gl 37.1 36 0.00077 26.7 2.8 25 147-171 43-67 (132)
127 PF00356 LacI: Bacterial regul 36.9 64 0.0014 20.2 3.4 42 221-270 2-43 (46)
128 PRK02901 O-succinylbenzoate sy 36.9 3.3E+02 0.0072 24.9 9.6 71 100-173 173-244 (327)
129 TIGR01502 B_methylAsp_ase meth 36.7 1.9E+02 0.0042 27.3 8.2 72 98-170 279-357 (408)
130 PRK13803 bifunctional phosphor 36.7 2E+02 0.0043 28.8 8.7 96 61-165 12-108 (610)
131 COG2089 SpsE Sialic acid synth 36.7 3.4E+02 0.0074 24.9 9.7 72 46-127 149-221 (347)
132 COG3172 NadR Predicted ATPase/ 36.6 96 0.0021 25.5 5.2 88 19-110 78-185 (187)
133 PF05913 DUF871: Bacterial pro 36.4 76 0.0017 29.4 5.3 125 103-267 104-235 (357)
134 PRK08776 cystathionine gamma-s 36.0 3.7E+02 0.0081 25.2 10.8 79 96-174 109-188 (405)
135 PRK15072 bifunctional D-altron 36.0 2E+02 0.0043 27.1 8.2 70 99-169 245-316 (404)
136 TIGR02026 BchE magnesium-proto 35.9 4.1E+02 0.009 25.7 12.8 105 60-168 222-343 (497)
137 PF11020 DUF2610: Domain of un 35.9 92 0.002 22.1 4.3 29 211-239 47-75 (82)
138 PRK14457 ribosomal RNA large s 35.8 3.6E+02 0.0077 24.9 11.4 110 71-181 197-345 (345)
139 PF05690 ThiG: Thiazole biosyn 35.6 3E+02 0.0065 24.0 10.2 110 58-170 71-184 (247)
140 TIGR01428 HAD_type_II 2-haloal 35.0 1.1E+02 0.0024 25.1 5.8 64 65-131 61-128 (198)
141 PF01902 ATP_bind_4: ATP-bindi 34.9 1.6E+02 0.0034 25.3 6.7 120 70-232 51-175 (218)
142 TIGR00676 fadh2 5,10-methylene 34.8 3.2E+02 0.007 24.1 15.0 107 59-175 69-193 (272)
143 PF14615 Rsa3: Ribosome-assemb 34.7 28 0.00062 22.0 1.5 18 9-26 30-47 (47)
144 COG1902 NemA NADH:flavin oxido 34.4 3.9E+02 0.0084 24.9 11.5 26 14-39 155-183 (363)
145 TIGR02090 LEU1_arch isopropylm 34.1 3E+02 0.0065 25.5 9.0 99 59-165 18-129 (363)
146 TIGR00542 hxl6Piso_put hexulos 33.8 1.4E+02 0.003 26.2 6.5 17 151-167 97-113 (279)
147 PF01402 RHH_1: Ribbon-helix-h 33.7 1E+02 0.0022 17.9 4.1 21 217-237 10-30 (39)
148 TIGR03679 arCOG00187 arCOG0018 33.6 3E+02 0.0065 23.4 11.1 97 67-173 46-147 (218)
149 PRK04820 rnpA ribonuclease P; 33.5 2.5E+02 0.0054 22.4 7.4 64 44-109 49-114 (145)
150 PRK05718 keto-hydroxyglutarate 33.2 1.8E+02 0.0039 24.8 6.8 87 61-165 25-112 (212)
151 PRK14017 galactonate dehydrata 33.1 1.9E+02 0.0042 26.8 7.6 69 100-169 217-287 (382)
152 TIGR03822 AblA_like_2 lysine-2 33.0 2.8E+02 0.0061 25.2 8.4 13 151-163 248-260 (321)
153 TIGR00048 radical SAM enzyme, 33.0 4E+02 0.0087 24.6 9.8 89 84-172 219-333 (355)
154 PRK13352 thiamine biosynthesis 32.8 1.7E+02 0.0037 27.7 6.8 119 98-265 122-246 (431)
155 cd06543 GH18_PF-ChiA-like PF-C 32.7 2.2E+02 0.0048 25.6 7.6 50 60-109 87-136 (294)
156 TIGR00035 asp_race aspartate r 32.6 3.1E+02 0.0068 23.3 11.0 65 61-126 15-90 (229)
157 PRK14456 ribosomal RNA large s 32.4 2.7E+02 0.0059 25.9 8.3 77 96-172 261-353 (368)
158 PRK10060 RNase II stability mo 32.3 2.2E+02 0.0049 28.6 8.4 115 46-167 492-617 (663)
159 PF02638 DUF187: Glycosyl hydr 32.2 87 0.0019 28.4 4.9 87 149-236 71-161 (311)
160 PRK02399 hypothetical protein; 32.1 1.2E+02 0.0026 28.6 5.9 54 46-115 187-240 (406)
161 PRK14462 ribosomal RNA large s 31.7 4.3E+02 0.0092 24.6 10.3 77 96-172 246-338 (356)
162 COG0820 Predicted Fe-S-cluster 31.5 4.1E+02 0.0089 24.6 9.1 88 84-172 216-330 (349)
163 COG0773 MurC UDP-N-acetylmuram 31.5 2E+02 0.0043 27.7 7.3 28 225-252 113-141 (459)
164 PF00697 PRAI: N-(5'phosphorib 31.5 1.2E+02 0.0026 25.3 5.4 67 72-144 14-81 (197)
165 COG1104 NifS Cysteine sulfinat 31.1 1.8E+02 0.0039 27.3 6.7 79 97-175 102-185 (386)
166 PRK11613 folP dihydropteroate 30.9 3.9E+02 0.0085 23.9 9.7 108 9-120 98-221 (282)
167 PRK09427 bifunctional indole-3 30.8 1.5E+02 0.0032 28.5 6.4 66 73-144 273-339 (454)
168 TIGR03569 NeuB_NnaB N-acetylne 30.7 4.3E+02 0.0092 24.2 10.6 80 61-144 144-226 (329)
169 cd04742 NPD_FabD 2-Nitropropan 30.7 2.1E+02 0.0046 27.2 7.3 90 73-169 7-103 (418)
170 COG1149 MinD superfamily P-loo 30.5 91 0.002 27.8 4.5 90 72-173 155-251 (284)
171 PRK00396 rnpA ribonuclease P; 30.4 2.6E+02 0.0056 21.8 6.7 63 44-109 47-112 (130)
172 COG0626 MetC Cystathionine bet 30.3 2.8E+02 0.006 26.2 8.0 82 96-177 112-195 (396)
173 PF01890 CbiG_C: Cobalamin syn 30.2 1.2E+02 0.0025 23.3 4.7 51 120-170 12-67 (121)
174 PF13467 RHH_4: Ribbon-helix-h 30.1 73 0.0016 21.8 3.1 26 218-243 23-48 (67)
175 PRK14455 ribosomal RNA large s 30.0 3.1E+02 0.0066 25.4 8.2 77 96-172 245-337 (356)
176 cd03318 MLE Muconate Lactonizi 29.5 1.4E+02 0.0031 27.4 6.0 74 99-173 227-302 (365)
177 TIGR00290 MJ0570_dom MJ0570-re 29.1 3.7E+02 0.0081 23.1 8.9 34 141-174 114-147 (223)
178 cd03314 MAL Methylaspartate am 29.1 4.3E+02 0.0093 24.6 9.0 70 99-169 244-320 (369)
179 cd03770 SR_TndX_transposase Se 29.0 1.1E+02 0.0024 23.8 4.6 42 68-109 56-97 (140)
180 PRK13015 3-dehydroquinate dehy 28.8 1.8E+02 0.004 23.2 5.6 80 58-146 24-105 (146)
181 PRK12331 oxaloacetate decarbox 28.8 3.2E+02 0.0069 26.3 8.3 101 60-166 23-141 (448)
182 PRK14464 ribosomal RNA large s 28.7 4.7E+02 0.01 24.1 9.1 77 96-172 225-317 (344)
183 PLN03228 methylthioalkylmalate 28.7 4.5E+02 0.0098 25.7 9.4 102 59-169 102-230 (503)
184 PRK11613 folP dihydropteroate 28.7 4.3E+02 0.0093 23.6 9.5 101 60-168 35-140 (282)
185 cd07942 DRE_TIM_LeuA Mycobacte 28.2 4.3E+02 0.0094 23.6 8.9 60 65-131 24-87 (284)
186 PRK14463 ribosomal RNA large s 28.1 4.8E+02 0.01 24.1 10.4 85 96-180 233-339 (349)
187 COG2875 CobM Precorrin-4 methy 28.1 2.9E+02 0.0064 24.1 7.0 106 59-170 58-168 (254)
188 TIGR00289 conserved hypothetic 27.9 3.6E+02 0.0077 23.2 7.7 122 67-232 48-174 (222)
189 TIGR03586 PseI pseudaminic aci 27.7 4.8E+02 0.01 23.9 10.2 78 61-144 145-225 (327)
190 PF01053 Cys_Met_Meta_PP: Cys/ 27.6 2.2E+02 0.0048 26.7 6.9 81 96-176 104-186 (386)
191 PRK10128 2-keto-3-deoxy-L-rham 27.3 3.1E+02 0.0067 24.3 7.4 71 77-149 166-247 (267)
192 PRK09613 thiH thiamine biosynt 27.2 5.8E+02 0.013 24.7 13.3 109 59-170 114-241 (469)
193 PF00388 PI-PLC-X: Phosphatidy 26.8 41 0.00088 26.5 1.6 15 13-27 31-45 (146)
194 cd08319 Death_RAIDD Death doma 26.7 75 0.0016 22.7 2.8 68 64-139 11-80 (83)
195 PRK08247 cystathionine gamma-s 26.4 3.2E+02 0.007 25.1 7.8 64 112-175 116-180 (366)
196 PRK14466 ribosomal RNA large s 26.4 3.5E+02 0.0076 25.0 7.8 83 44-130 102-203 (345)
197 smart00052 EAL Putative diguan 26.3 3.8E+02 0.0082 22.3 7.9 100 63-167 99-209 (241)
198 COG0635 HemN Coproporphyrinoge 26.2 2.8E+02 0.0062 26.2 7.4 62 59-122 200-276 (416)
199 PLN02907 glutamate-tRNA ligase 26.0 5.6E+02 0.012 26.4 9.8 60 61-129 260-319 (722)
200 TIGR00677 fadh2_euk methylenet 25.9 4.7E+02 0.01 23.2 15.4 107 59-175 70-197 (281)
201 TIGR02534 mucon_cyclo muconate 25.8 2.2E+02 0.0048 26.2 6.6 74 99-173 226-301 (368)
202 PRK14461 ribosomal RNA large s 25.5 2.9E+02 0.0063 25.8 7.1 88 44-131 106-224 (371)
203 PHA01976 helix-turn-helix prot 25.5 53 0.0012 21.7 1.8 21 219-239 5-25 (67)
204 PRK07027 cobalamin biosynthesi 25.5 1.4E+02 0.0031 23.0 4.5 56 114-169 5-68 (126)
205 COG0673 MviM Predicted dehydro 25.5 2E+02 0.0044 25.7 6.2 67 219-287 41-117 (342)
206 PRK14459 ribosomal RNA large s 25.2 5.7E+02 0.012 23.9 10.2 89 84-172 242-359 (373)
207 PRK06361 hypothetical protein; 25.2 4E+02 0.0087 22.2 14.7 176 11-239 13-200 (212)
208 PRK00588 rnpA ribonuclease P; 25.2 3E+02 0.0066 20.9 6.2 64 43-109 43-109 (118)
209 TIGR00284 dihydropteroate synt 25.0 6.6E+02 0.014 24.6 9.8 94 63-168 165-258 (499)
210 PRK08248 O-acetylhomoserine am 24.9 3.7E+02 0.008 25.5 8.0 76 98-173 115-191 (431)
211 cd07938 DRE_TIM_HMGL 3-hydroxy 24.9 3E+02 0.0065 24.4 7.0 102 61-167 18-133 (274)
212 cd00466 DHQase_II Dehydroquina 24.8 2.3E+02 0.0049 22.5 5.4 80 58-146 22-103 (140)
213 PF13167 GTP-bdg_N: GTP-bindin 24.6 76 0.0016 23.4 2.6 68 214-285 6-80 (95)
214 TIGR01329 cysta_beta_ly_E cyst 24.4 3.4E+02 0.0074 25.1 7.6 78 98-175 97-175 (378)
215 PF13380 CoA_binding_2: CoA bi 24.3 1.8E+02 0.004 21.9 4.8 51 110-166 54-107 (116)
216 PRK13210 putative L-xylulose 5 24.3 2.6E+02 0.0056 24.3 6.5 17 151-167 97-113 (284)
217 PRK12410 glutamylglutaminyl-tR 24.2 3.7E+02 0.0079 25.8 7.7 97 20-129 9-105 (433)
218 PF05368 NmrA: NmrA-like famil 24.2 3.4E+02 0.0073 22.7 7.1 85 79-173 21-106 (233)
219 cd00338 Ser_Recombinase Serine 24.1 1.6E+02 0.0035 22.3 4.7 45 66-110 51-95 (137)
220 COG0621 MiaB 2-methylthioadeni 24.1 4E+02 0.0087 25.5 7.9 76 96-173 175-265 (437)
221 PF10668 Phage_terminase: Phag 24.1 74 0.0016 21.3 2.2 17 220-236 24-40 (60)
222 TIGR02080 O_succ_thio_ly O-suc 24.0 5.8E+02 0.013 23.6 10.8 79 96-174 100-179 (382)
223 PF01381 HTH_3: Helix-turn-hel 24.0 23 0.00051 22.4 -0.2 13 257-269 37-49 (55)
224 PRK15108 biotin synthase; Prov 24.0 5.7E+02 0.012 23.5 13.4 110 60-173 76-196 (345)
225 PF06792 UPF0261: Uncharacteri 23.7 1.5E+02 0.0033 28.0 4.9 54 46-115 186-239 (403)
226 TIGR01660 narH nitrate reducta 23.6 48 0.001 31.7 1.7 53 110-162 264-316 (492)
227 PF07745 Glyco_hydro_53: Glyco 23.5 2.2E+02 0.0048 26.1 5.9 211 8-254 3-256 (332)
228 PRK08045 cystathionine gamma-s 23.5 4.8E+02 0.01 24.2 8.4 79 97-175 102-181 (386)
229 PRK13602 putative ribosomal pr 23.5 2.7E+02 0.0059 19.6 5.7 57 103-168 3-60 (82)
230 cd02070 corrinoid_protein_B12- 23.3 4.4E+02 0.0095 21.9 9.1 142 12-162 15-162 (201)
231 KOG1549 Cysteine desulfurase N 23.1 3.6E+02 0.0078 25.7 7.3 76 98-175 143-225 (428)
232 TIGR01664 DNA-3'-Pase DNA 3'-p 22.8 4.1E+02 0.0088 21.4 8.5 89 46-134 60-157 (166)
233 COG0820 Predicted Fe-S-cluster 22.8 5.6E+02 0.012 23.7 8.3 89 43-131 99-208 (349)
234 PF04263 TPK_catalytic: Thiami 22.4 2.2E+02 0.0047 21.9 4.9 40 229-268 69-108 (123)
235 PF00578 AhpC-TSA: AhpC/TSA fa 22.3 1.6E+02 0.0034 21.8 4.1 34 98-131 43-79 (124)
236 PRK11840 bifunctional sulfur c 22.2 6.1E+02 0.013 23.2 12.8 113 55-170 142-258 (326)
237 PRK15408 autoinducer 2-binding 22.2 5.9E+02 0.013 23.1 10.6 85 44-138 23-111 (336)
238 cd01994 Alpha_ANH_like_IV This 22.2 4.6E+02 0.01 21.8 10.2 97 67-173 48-149 (194)
239 PTZ00402 glutamyl-tRNA synthet 22.2 8.1E+02 0.018 24.6 10.1 62 61-131 99-161 (601)
240 PF13407 Peripla_BP_4: Peripla 22.0 3.8E+02 0.0083 22.5 7.1 72 63-141 14-89 (257)
241 cd00739 DHPS DHPS subgroup of 22.0 3.1E+02 0.0067 24.0 6.4 107 9-121 84-209 (257)
242 COG0218 Predicted GTPase [Gene 21.9 4.9E+02 0.011 22.0 9.1 59 46-109 138-198 (200)
243 PF10171 DUF2366: Uncharacteri 21.8 1.9E+02 0.0041 23.9 4.6 39 80-119 77-115 (173)
244 PF13518 HTH_28: Helix-turn-he 21.8 1.1E+02 0.0024 18.8 2.8 22 220-242 14-35 (52)
245 TIGR01927 menC_gamma/gm+ o-suc 21.7 5.9E+02 0.013 22.8 8.7 73 101-174 196-270 (307)
246 cd07995 TPK Thiamine pyrophosp 21.5 1.8E+02 0.0038 24.5 4.7 40 229-268 75-114 (208)
247 PRK13710 plasmid maintenance p 21.5 64 0.0014 22.4 1.6 32 5-36 5-36 (72)
248 PRK06740 histidinol-phosphatas 21.4 6.3E+02 0.014 23.0 10.5 98 67-165 156-288 (331)
249 PRK10508 hypothetical protein; 21.4 1.6E+02 0.0034 27.0 4.6 42 61-108 287-328 (333)
250 cd02932 OYE_YqiM_FMN Old yello 21.3 6.2E+02 0.013 22.9 10.7 16 13-28 159-174 (336)
251 COG0365 Acs Acyl-coenzyme A sy 21.2 1E+02 0.0022 30.3 3.5 72 219-298 254-328 (528)
252 COG1564 THI80 Thiamine pyropho 21.2 2.3E+02 0.0051 24.2 5.2 43 227-269 74-116 (212)
253 cd03327 MR_like_2 Mandelate ra 21.1 2.8E+02 0.0061 25.3 6.2 70 98-168 209-280 (341)
254 PLN03233 putative glutamate-tR 21.1 4.8E+02 0.01 25.7 7.9 59 61-128 58-116 (523)
255 PRK14895 gltX glutamyl-tRNA sy 21.1 5.3E+02 0.011 25.3 8.2 97 20-128 14-110 (513)
256 COG2055 Malate/L-lactate dehyd 21.1 5.6E+02 0.012 23.7 7.9 89 59-166 5-113 (349)
257 smart00642 Aamy Alpha-amylase 20.8 1.4E+02 0.003 24.2 3.7 23 150-172 72-94 (166)
258 smart00148 PLCXc Phospholipase 20.8 66 0.0014 25.2 1.7 17 11-27 31-47 (135)
259 PF13443 HTH_26: Cro/C1-type H 20.7 33 0.00072 22.5 0.0 41 220-270 12-52 (63)
260 PRK10945 gene expression modul 20.7 2E+02 0.0044 19.9 3.8 30 257-286 20-49 (72)
261 TIGR00673 cynS cyanate hydrata 20.7 1.8E+02 0.004 23.3 4.2 63 219-283 11-73 (150)
262 PRK07811 cystathionine gamma-s 20.6 6.9E+02 0.015 23.2 10.1 56 119-174 133-189 (388)
263 PF07611 DUF1574: Protein of u 20.5 87 0.0019 28.9 2.6 33 135-172 244-276 (345)
264 cd08568 GDPD_TmGDE_like Glycer 20.5 4.9E+02 0.011 21.9 7.3 66 104-169 110-202 (226)
265 PRK14469 ribosomal RNA large s 20.4 6.7E+02 0.014 22.9 8.8 75 96-170 234-323 (343)
266 KOG0077 Vesicle coat complex C 20.3 3.2E+02 0.007 22.6 5.5 48 96-144 7-54 (193)
267 PRK10551 phage resistance prot 20.2 3.6E+02 0.0078 26.3 7.1 114 46-167 349-473 (518)
268 PRK05395 3-dehydroquinate dehy 20.2 2.7E+02 0.0058 22.3 5.0 81 58-147 24-106 (146)
269 cd00740 MeTr MeTr subgroup of 20.1 5.9E+02 0.013 22.2 11.1 104 59-169 22-127 (252)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.3e-55 Score=398.34 Aligned_cols=259 Identities=21% Similarity=0.373 Sum_probs=225.1
Q ss_pred HHHHHHHHHcCCceeehHhHH--------HHHHHhccCCCCccceEEEccccCCC--------CCCCHHHHHHHHHHHHh
Q 022088 11 LPLLTWLIYMGLLKISMASSS--------IEFVERGHQSSWIRSEGDLTKWVPPP--------VKMTSSIVRESIDVSRR 74 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y--------~~~~~~~~~~~~r~~~~I~tK~~~~~--------~~~~~~~i~~sve~SL~ 74 (303)
.++|++|+++|||+||||+.| +|+|++.... |++++|+||++... .++++++++++++.||+
T Consensus 36 ~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~--Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~ 113 (316)
T COG0667 36 IEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR--RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLK 113 (316)
T ss_pred HHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC--CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHH
Confidence 359999999999999999999 4678877643 78999999998543 35799999999999999
Q ss_pred hcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHH
Q 022088 75 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMA 154 (303)
Q Consensus 75 ~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~ 154 (303)
||||||||+||+||||...+ .++++.+|.+|+++||||++|+||++.+++.++.....+++++|.+||+++|..+.+++
T Consensus 114 RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~ 192 (316)
T COG0667 114 RLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELL 192 (316)
T ss_pred HhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHH
Confidence 99999999999999999888 78999999999999999999999999999999988634799999999999988887899
Q ss_pred HHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccC--CchhHHHHHHHHHHHHHHhCCCH
Q 022088 155 ELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWG--GWSQFQVLLQTLKRIASKHGVSI 232 (303)
Q Consensus 155 ~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ia~~~g~s~ 232 (303)
++|+++||++++|+||++|+|++++..+ + .+.+... ..++. ..+....++..++++|+++|+|+
T Consensus 193 ~~~~~~gi~~~~~spla~G~Ltgk~~~~--~---~~~r~~~---------~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~ 258 (316)
T COG0667 193 PLCREEGIGLLAYSPLASGLLTGKYLPG--P---EGSRASE---------LPRFQRELTERGLAILRALEELAKELGATP 258 (316)
T ss_pred HHHHHcCCeEEEecCccccccCCCcCCC--c---chhhccc---------cccchhhhhHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999998863 1 1111111 00111 11345677899999999999999
Q ss_pred HHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022088 233 PVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 288 (303)
Q Consensus 233 ~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~ 288 (303)
+|+||+|++++|.|+++|+|++ +++||++|+++++..|++++++.|+......+
T Consensus 259 aq~ALawvl~~~~v~~~I~Ga~--~~~qL~en~~A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 259 AQVALAWVLAQPGVTSPIVGAS--KAEQLEENLAALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred HHHHHHHHHhCCCCceEeecCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence 9999999999999999999999 99999999999999999999999998876543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.7e-55 Score=389.32 Aligned_cols=269 Identities=22% Similarity=0.317 Sum_probs=232.9
Q ss_pred HHHHHHHHHcCCceeehHhHH--------HHHHHhccCCCCccceEEEccccCCC-----CCCCHHHHHHHHHHHHhhcC
Q 022088 11 LPLLTWLIYMGLLKISMASSS--------IEFVERGHQSSWIRSEGDLTKWVPPP-----VKMTSSIVRESIDVSRRRMD 77 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y--------~~~~~~~~~~~~r~~~~I~tK~~~~~-----~~~~~~~i~~sve~SL~~Lg 77 (303)
.+++..|+++|+|+||||..| +|+++++.. ..|++++|+||++... .+.+...+...++.||++||
T Consensus 47 ~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~-~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~ 125 (336)
T KOG1575|consen 47 FELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRG-WRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQ 125 (336)
T ss_pred HHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcC-CcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcC
Confidence 578999999999999999999 467777764 5688999999987543 57788999999999999999
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccCh-hhhHHH
Q 022088 78 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAE 155 (303)
Q Consensus 78 ~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~-~~~~~~ 155 (303)
+||||+||+||+|+..+ +++++++|.+++++|||||||+|+++.++++++... .+++.++|++||++.|.. +.++++
T Consensus 126 ~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~ 204 (336)
T KOG1575|consen 126 TDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIP 204 (336)
T ss_pred CCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHH
Confidence 99999999999999999 899999999999999999999999999999999987 356999999999999985 556999
Q ss_pred HHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHH
Q 022088 156 LCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVV 235 (303)
Q Consensus 156 ~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ql 235 (303)
+|++.||++++||||++|+||++|... ...|+...+... ....+++..++..+.+++++.++|+++|+|++|+
T Consensus 205 ~c~~~Gi~li~ysPL~~G~Ltgk~~~~-e~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~ql 277 (336)
T KOG1575|consen 205 LCRELGIGLIAWSPLGRGLLTGKYKLG-EDSRNGDKRFQF------LGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQL 277 (336)
T ss_pred HHHHcCcceEEecccccceeccCcccc-cccccccccccc------cccccccchhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999999999875 112222222211 1122222222567788999999999999999999
Q ss_pred HHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCC
Q 022088 236 AVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDL 290 (303)
Q Consensus 236 al~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~~~ 290 (303)
||+|+++++.|+++|||++ +++||+||++|+...|+++++.+|++..+..+.+
T Consensus 278 ALawv~~~~~v~~pIpG~s--~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~ 330 (336)
T KOG1575|consen 278 ALAWVLSNGKVSSPIPGAS--KIEQLKENIGALSVKLTPEEIKELEEIIDKILGF 330 (336)
T ss_pred HHHHHHHhCCCEEecCCCC--cHHHHHHHHhhhhccCCHHHHHHHHHhhccccCc
Confidence 9999999999999999999 9999999999999999999999999998875544
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.6e-55 Score=379.71 Aligned_cols=231 Identities=20% Similarity=0.254 Sum_probs=204.2
Q ss_pred cHHHHHHHHHcCCceeehHhHHH-----HHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEE
Q 022088 10 DLPLLTWLIYMGLLKISMASSSI-----EFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDML 84 (303)
Q Consensus 10 ~~~lv~~Al~~Gi~~~DtA~~y~-----~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~ 84 (303)
..+.|.+|++.|||+||||..|+ |++++. ....|+++||+||+|+. +.+++.+.+++++||++||+||+|+|
T Consensus 30 ~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~-s~v~ReelFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLy 106 (280)
T COG0656 30 AVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE-SGVPREELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLY 106 (280)
T ss_pred HHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh-cCCCHHHeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEE
Confidence 35789999999999999999995 445555 34568899999999988 55889999999999999999999999
Q ss_pred EEecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCC
Q 022088 85 QFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 162 (303)
Q Consensus 85 ~lH~~~~~-~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi 162 (303)
+||||.+. ...+.++|++||+++++||||+||||||+.++++++++. ++.|+++|++||++.+..+ ++++|+++||
T Consensus 107 LiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI 184 (280)
T COG0656 107 LIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGI 184 (280)
T ss_pred EECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCC
Confidence 99999763 222679999999999999999999999999999999987 6789999999999987764 9999999999
Q ss_pred eEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 022088 163 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILD 242 (303)
Q Consensus 163 ~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~ 242 (303)
.++|||||++|-. ... -+.+.+||++||.|++|++|+|+++
T Consensus 185 ~v~AysPL~~g~~---l~~------------------------------------~~~l~~Ia~k~g~t~AQv~L~W~i~ 225 (280)
T COG0656 185 AVEAYSPLAKGGK---LLD------------------------------------NPVLAEIAKKYGKTPAQVALRWHIQ 225 (280)
T ss_pred EEEEECCcccccc---ccc------------------------------------ChHHHHHHHHhCCCHHHHHHHHHHh
Confidence 9999999996531 111 1789999999999999999999999
Q ss_pred CCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022088 243 QPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 288 (303)
Q Consensus 243 ~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~ 288 (303)
++ .++||.++ +++|+++|++++++.||+|||+.|+++.....
T Consensus 226 ~g--v~~Ipks~--~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 226 RG--VIVIPKST--TPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred CC--cEEecCCC--CHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 99 45698888 99999999999999999999999999987653
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.9e-52 Score=376.72 Aligned_cols=262 Identities=18% Similarity=0.209 Sum_probs=213.9
Q ss_pred HHHHHHHHHcCCceeehHhHHH--------HHHHhccCCCCccceEEEccccCC-----CCCCCHHHHHHHHHHHHhhcC
Q 022088 11 LPLLTWLIYMGLLKISMASSSI--------EFVERGHQSSWIRSEGDLTKWVPP-----PVKMTSSIVRESIDVSRRRMD 77 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~--------~~~~~~~~~~~r~~~~I~tK~~~~-----~~~~~~~~i~~sve~SL~~Lg 77 (303)
..+|+.|+++|||+||||+.|+ |++++.. ...|++++|+||++.. ..+++++.+++++++||+|||
T Consensus 32 ~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~-~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~ 110 (317)
T TIGR01293 32 EQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK-GWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQ 110 (317)
T ss_pred HHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc-CCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999994 5666643 2247799999997532 135689999999999999999
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc----C-CCeeeecccccccccCh-hh
Q 022088 78 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----G-IPVVSNQVQHSVVDMRP-QQ 151 (303)
Q Consensus 78 ~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~-~~~~~~q~~~n~l~~~~-~~ 151 (303)
|||||+|++|||++..+ +++++++|++|+++||||+|||||++.++++++... + ++++++|++||++++.. +.
T Consensus 111 td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~ 189 (317)
T TIGR01293 111 LEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEV 189 (317)
T ss_pred CCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHH
Confidence 99999999999988777 789999999999999999999999999998876542 2 57899999999999874 66
Q ss_pred hHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCc--hhHHHHHHHHHHHHHHhC
Q 022088 152 KMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW--SQFQVLLQTLKRIASKHG 229 (303)
Q Consensus 152 ~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ia~~~g 229 (303)
+++++|+++||++++|+||++|+|++++... .|. +.+.......++. ..+..+ .....+++.++++|+++|
T Consensus 190 ~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~---~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~g 262 (317)
T TIGR01293 190 QLPELYHKIGVGAMTWSPLACGLVSGKYDSG---IPP-YSRATLKGYQWLK---DKILSEEGRRQQARLKDLQAIAERLG 262 (317)
T ss_pred HHHHHHHHcCCeEEEeccccccccCCCCCCC---CCC-cccccccccchhh---hhhcchhhHHHHHHHHHHHHHHHHHC
Confidence 8999999999999999999999999998643 111 1111000011111 000000 123456788999999999
Q ss_pred CCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC--CCCHHHHHHHHHH
Q 022088 230 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSIQEV 283 (303)
Q Consensus 230 ~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~--~L~~e~~~~i~~~ 283 (303)
+|++|+||+|++++|+|+++|+|++ +++|+++|+++++. +||+++++.|+++
T Consensus 263 ~s~aqlal~w~l~~~~v~~~i~G~~--~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 263 CTLPQLAIAWCLRNEGVSSVLLGAS--SAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred cCHHHHHHHHHhcCCCCeEEEeCCC--CHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999999999999999999999 99999999999987 8999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.3e-51 Score=378.30 Aligned_cols=274 Identities=19% Similarity=0.246 Sum_probs=219.7
Q ss_pred HHHHHHHHHcCCceeehHhHHH----------HHHHhccCCCCccceEEEccccCC------CCCCCHHHHHHHHHHHHh
Q 022088 11 LPLLTWLIYMGLLKISMASSSI----------EFVERGHQSSWIRSEGDLTKWVPP------PVKMTSSIVRESIDVSRR 74 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~----------~~~~~~~~~~~r~~~~I~tK~~~~------~~~~~~~~i~~sve~SL~ 74 (303)
..+|+.|+++|||+||||..|+ |++++......|++++|+||++.. ..+.+++.+++++++||+
T Consensus 46 ~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~ 125 (346)
T PRK09912 46 RAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLK 125 (346)
T ss_pred HHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999996 446654311247899999998631 123579999999999999
Q ss_pred hcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc----CCCeeeecccccccccChh
Q 022088 75 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQ 150 (303)
Q Consensus 75 ~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~~q~~~n~l~~~~~ 150 (303)
||||||||+|++|+|+...+ .++++++|++|+++||||+||||||++++++++.+. +.+++++|++||++++..+
T Consensus 126 rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~ 204 (346)
T PRK09912 126 RMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVD 204 (346)
T ss_pred HHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccc
Confidence 99999999999999988777 799999999999999999999999999988866542 5678999999999998765
Q ss_pred -hhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhC
Q 022088 151 -QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG 229 (303)
Q Consensus 151 -~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 229 (303)
.+++++|+++||++++|+||++|+|++++... .|. +.+.... ...++++.+++.. +...++++.++++|+++|
T Consensus 205 ~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~---~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~g 278 (346)
T PRK09912 205 KSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG---IPQ-DSRMHRE-GNKVRGLTPKMLT-EANLNSLRLLNEMAQQRG 278 (346)
T ss_pred hhhHHHHHHHcCceEEEehhhcCccccCCCCCC---CCC-Ccccccc-ccchhhhchhhcc-HHHHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999988553 121 1111000 0000011111111 123455689999999999
Q ss_pred CCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhh-cCCCCHHHHHHHHHHHhcCCCCcccc
Q 022088 230 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF-MLSLDEDDVNSIQEVTKKGKDLLGVI 294 (303)
Q Consensus 230 ~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~-~~~L~~e~~~~i~~~~~~~~~~~~~~ 294 (303)
+|++|+||+|++++|.|+++|+|++ +++||++|++++ +++|++++++.|+++.++ .....|.
T Consensus 279 ~t~aq~AL~w~l~~~~v~~~i~G~~--~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~-~~~~~~~ 341 (346)
T PRK09912 279 QSMAQMALSWLLKDERVTSVLIGAS--RAEQLEENVQALNNLTFSTEELAQIDQHIAD-GELNLWQ 341 (346)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeCCC--CHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc-cceeEee
Confidence 9999999999999999999999999 999999999998 479999999999999866 4455574
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.7e-50 Score=371.47 Aligned_cols=262 Identities=22% Similarity=0.303 Sum_probs=214.2
Q ss_pred HHHHHHHHHcCCceeehHhHHH---------------HHHHhccCCCCccceEEEccccCCC----------CCCCHHHH
Q 022088 11 LPLLTWLIYMGLLKISMASSSI---------------EFVERGHQSSWIRSEGDLTKWVPPP----------VKMTSSIV 65 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~---------------~~~~~~~~~~~r~~~~I~tK~~~~~----------~~~~~~~i 65 (303)
.++|+.|+++|||+||||+.|+ |++++... .|++++|+||++... .+++++.+
T Consensus 33 ~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~--~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i 110 (346)
T PRK10625 33 HAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG--SREKLIIASKVSGPSRNNDKGIRPNQALDRKNI 110 (346)
T ss_pred HHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC--CcceEEEEcccccCCcCCCCCcCCCCCCCHHHH
Confidence 5789999999999999999994 45665432 477999999985321 24689999
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCC----------------CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 022088 66 RESIDVSRRRMDVPCLDMLQFHWWDYS----------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 129 (303)
Q Consensus 66 ~~sve~SL~~Lg~d~iDl~~lH~~~~~----------------~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~ 129 (303)
++++++||+||||||||+|++|||+.. ...++++|++|++|+++||||+||+|||+.++++++.
T Consensus 111 ~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~ 190 (346)
T PRK10625 111 REALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYL 190 (346)
T ss_pred HHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHH
Confidence 999999999999999999999999652 1126899999999999999999999999999887765
Q ss_pred Hc----CC-CeeeecccccccccChhhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhh
Q 022088 130 EN----GI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRM 204 (303)
Q Consensus 130 ~~----~~-~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (303)
.. +. .+.++|++||++++..+.+++++|+++||++++|+||++|+|++++.... .| .+.+.. ....|
T Consensus 191 ~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~--~~-~~~~~~--~~~~~--- 262 (346)
T PRK10625 191 HLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGA--KP-AGARNT--LFSRF--- 262 (346)
T ss_pred HHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCC--CC-CCcccc--ccccc---
Confidence 42 33 58899999999998877789999999999999999999999999975531 12 111100 00001
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022088 205 VDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 284 (303)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~ 284 (303)
.+ ...+...++.+.++++|+++|+|++|+||+|++++|.|+++|+|++ +++||++|+++++++|++++++.|+++.
T Consensus 263 -~~-~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~--~~~~l~en~~a~~~~L~~~~~~~l~~~~ 338 (346)
T PRK10625 263 -TR-YSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT--TMEQLKTNIESLHLTLSEEVLAEIEAVH 338 (346)
T ss_pred -cc-ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 01 1112344567899999999999999999999999999999999999 9999999999999999999999999997
Q ss_pred hc
Q 022088 285 KK 286 (303)
Q Consensus 285 ~~ 286 (303)
+.
T Consensus 339 ~~ 340 (346)
T PRK10625 339 QV 340 (346)
T ss_pred hh
Confidence 53
No 7
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.8e-50 Score=354.74 Aligned_cols=228 Identities=16% Similarity=0.215 Sum_probs=200.1
Q ss_pred HHHHHHHHHcCCceeehHhHHH-----HHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEE
Q 022088 11 LPLLTWLIYMGLLKISMASSSI-----EFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ 85 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~-----~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~ 85 (303)
.++|+.|++.|||+||||+.|+ |++++.. +..|++++|+||+++. ..+++.+++++++||+|||+||||+|+
T Consensus 19 ~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~-~~~R~~v~i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~ 95 (267)
T PRK11172 19 IDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES-GVPRDELFITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTL 95 (267)
T ss_pred HHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc-CCChhHeEEEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEE
Confidence 4689999999999999999994 6677643 2347799999998754 568999999999999999999999999
Q ss_pred EecCCCC--CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC-CeeeecccccccccChhhhHHHHHHHhC
Q 022088 86 FHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI-PVVSNQVQHSVVDMRPQQKMAELCQLTG 161 (303)
Q Consensus 86 lH~~~~~--~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~-~~~~~q~~~n~l~~~~~~~~~~~~~~~g 161 (303)
+|||++. .+ .+++|++|++|+++||||+||||||+.++++++... +. +++++|++||++++. .+++++|+++|
T Consensus 96 lH~~~~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~g 172 (267)
T PRK11172 96 IHWPSPNDEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHG 172 (267)
T ss_pred eCCCCCCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCC
Confidence 9999763 33 689999999999999999999999999999988875 33 689999999999864 57999999999
Q ss_pred CeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 022088 162 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 241 (303)
Q Consensus 162 i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l 241 (303)
|++++|+||++|.+.. + +.++++|+++|+|++|+||+|++
T Consensus 173 i~v~a~spl~~G~~~~----~------------------------------------~~l~~~a~~~~~s~aqval~w~l 212 (267)
T PRK11172 173 IHVTSYMTLAYGKVLK----D------------------------------------PVIARIAAKHNATPAQVILAWAM 212 (267)
T ss_pred CEEEEECCCCCCcccC----C------------------------------------HHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999985421 0 46889999999999999999999
Q ss_pred hCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022088 242 DQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 288 (303)
Q Consensus 242 ~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~ 288 (303)
+++ + ++|+|++ +++|+++|+++++++||++++++|+++.++.+
T Consensus 213 ~~~-~-~~i~g~~--~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 213 QLG-Y-SVIPSST--KRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred hCC-C-EeecCCC--CHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 996 3 5799999 99999999999999999999999999986544
No 8
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=5e-50 Score=358.78 Aligned_cols=251 Identities=27% Similarity=0.421 Sum_probs=208.1
Q ss_pred HHHHHHHHHcCCceeehHhHH--------HHHHHhccCCCCccceEEEcccc---CCCCCCCHHHHHHHHHHHHhhcCCC
Q 022088 11 LPLLTWLIYMGLLKISMASSS--------IEFVERGHQSSWIRSEGDLTKWV---PPPVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y--------~~~~~~~~~~~~r~~~~I~tK~~---~~~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
.++|+.|++.|||+||||+.| +|++++. ....|++++|+||+. .....++++.+++++++||++||+|
T Consensus 20 ~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~-~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d 98 (283)
T PF00248_consen 20 EAILRRALEAGINFFDTADSYGNGRSERILGRALRK-SRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTD 98 (283)
T ss_dssp HHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH-TSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCeeccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999998 4567776 235688999999992 2234779999999999999999999
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHH
Q 022088 80 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQ 158 (303)
Q Consensus 80 ~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~ 158 (303)
|||+|++|+|+.......++|++|++|+++|+||+||||||+++.++.+... ..+|+++|++||++++....+++++|+
T Consensus 99 ~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~ 178 (283)
T PF00248_consen 99 YIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCR 178 (283)
T ss_dssp SEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHH
T ss_pred chhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988775789999999999999999999999999999999554 578999999999998888889999999
Q ss_pred HhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022088 159 LTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVR 238 (303)
Q Consensus 159 ~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~ 238 (303)
++||++++|+||++|+|++++.....+.++... .......+.+.++++++|+|++|+||+
T Consensus 179 ~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~a~~~g~s~~q~al~ 238 (283)
T PF00248_consen 179 EHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL--------------------RDAQELADALRELAEEHGVSPAQLALR 238 (283)
T ss_dssp HTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS--------------------STHGGGHHHHHHHHHHHTSSHHHHHHH
T ss_pred ccccccccccccccCccccccccCCCccccccc--------------------chhhhhhhhhhhhhhhcccccchhhhh
Confidence 999999999999999999987765221110000 002234589999999999999999999
Q ss_pred HHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022088 239 YILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 284 (303)
Q Consensus 239 ~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~ 284 (303)
|+++++.+.++|+|++ +++|+++|+++++.+||+++++.|+++.
T Consensus 239 ~~l~~~~~~~~i~g~~--~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 239 WVLSHPGVASVIVGAS--SPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHTSHTTEEEEEB-S--SHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhccccccccCCCC--CHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999999999999999 9999999999999999999999999864
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.9e-49 Score=358.73 Aligned_cols=251 Identities=16% Similarity=0.203 Sum_probs=207.9
Q ss_pred HHHHHHHHHcCCceeehHhHHH--------HHHHhccCCCCccceEEEccccCCC--CCCCHHHHHHHHHHHHhhcCCCc
Q 022088 11 LPLLTWLIYMGLLKISMASSSI--------EFVERGHQSSWIRSEGDLTKWVPPP--VKMTSSIVRESIDVSRRRMDVPC 80 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~--------~~~~~~~~~~~r~~~~I~tK~~~~~--~~~~~~~i~~sve~SL~~Lg~d~ 80 (303)
.++|+.|+++|||+||||+.|+ |++++.. +..|++++|+||+++.. .+++++.+++++++||++||+||
T Consensus 34 ~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~-~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~ 112 (314)
T PLN02587 34 IASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL-GIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDY 112 (314)
T ss_pred HHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC-CCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3789999999999999999993 4566543 23577999999997432 36789999999999999999999
Q ss_pred ccEEEEecCCCCCC--cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc----CCCeeeecccccccccChhhhHH
Q 022088 81 LDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMA 154 (303)
Q Consensus 81 iDl~~lH~~~~~~~--~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~~q~~~n~l~~~~~~~~~ 154 (303)
||+|++|+|+.... .++++|++|++|+++||||+||+|||++++++.+... .+.+..+|+.||++++.. .+++
T Consensus 113 iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll 191 (314)
T PLN02587 113 VDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLL 191 (314)
T ss_pred eeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHH
Confidence 99999999964321 2578999999999999999999999999888776653 234556789999987644 4899
Q ss_pred HHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHH
Q 022088 155 ELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPV 234 (303)
Q Consensus 155 ~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~q 234 (303)
++|+++||++++|+||++|+|+++..... .+ ..+....+++.++++|+++|+|++|
T Consensus 192 ~~~~~~gi~v~a~spl~~G~L~~~~~~~~--~~----------------------~~~~~~~~~~~l~~~a~~~~~s~aq 247 (314)
T PLN02587 192 PYLKSKGVGVISASPLAMGLLTENGPPEW--HP----------------------APPELKSACAAAATHCKEKGKNISK 247 (314)
T ss_pred HHHHHcCceEEEechhhccccCCCCCCCC--CC----------------------CCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999998742210 00 0123445678899999999999999
Q ss_pred HHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC----CCCHHHHHHHHHHHhcCCC
Q 022088 235 VAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNSIQEVTKKGKD 289 (303)
Q Consensus 235 lal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~----~L~~e~~~~i~~~~~~~~~ 289 (303)
+||+|++++|.|+++|+|++ +++||++|+++++. +|+++++++|+++.....+
T Consensus 248 ~al~~~l~~~~v~~~i~G~~--~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~~~~ 304 (314)
T PLN02587 248 LALQYSLSNKDISTTLVGMN--SVQQVEENVAAATELETSGIDEELLSEVEAILAPVKN 304 (314)
T ss_pred HHHHHHHhCCCCeeEEecCC--CHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhccccC
Confidence 99999999999999999999 99999999999763 7999999999999865443
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.6e-49 Score=344.15 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=200.2
Q ss_pred HHHHHHHHHcCCceeehHhHHH-----HHHHh----ccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcc
Q 022088 11 LPLLTWLIYMGLLKISMASSSI-----EFVER----GHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCL 81 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~-----~~~~~----~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~i 81 (303)
.+.|..|++.||||||||..|. |++++ ++ ..+|+++||+||+|+. ...++.++.++++||++||+||+
T Consensus 31 ~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~-~v~RediFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYv 107 (300)
T KOG1577|consen 31 AEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEG-GVKREDIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYV 107 (300)
T ss_pred HHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhC-CcchhhheeeeccCcc--ccChhhHHHHHHHHHHHhChhhh
Confidence 4678999999999999999994 44443 33 4678899999999987 45889999999999999999999
Q ss_pred cEEEEecCCCC---------------CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeeccccccc
Q 022088 82 DMLQFHWWDYS---------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVV 145 (303)
Q Consensus 82 Dl~~lH~~~~~---------------~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l 145 (303)
|+|++|||-.. ..+..++|++||+++++|++|+||||||+..++++++.. .++|.++|+++|++
T Consensus 108 DLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~ 187 (300)
T KOG1577|consen 108 DLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPY 187 (300)
T ss_pred heeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCC
Confidence 99999999553 123568999999999999999999999999999999987 68899999999998
Q ss_pred ccChhhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHH
Q 022088 146 DMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIA 225 (303)
Q Consensus 146 ~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia 225 (303)
.+ +.+++++|+++||.+.|||||+++-- ++ +.+.+ +.+.+||
T Consensus 188 ~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~---------------------------------~ll~~--~~l~~iA 229 (300)
T KOG1577|consen 188 LQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS---------------------------------DLLED--PVLKEIA 229 (300)
T ss_pred cC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc---------------------------------ccccC--HHHHHHH
Confidence 44 55799999999999999999988631 00 01122 8999999
Q ss_pred HHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022088 226 SKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 288 (303)
Q Consensus 226 ~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~ 288 (303)
++||.|++|++|||+++++ .+|||-++ |++++.||++.+++.||++|++.|++.....+
T Consensus 230 ~K~~kt~aQIlLrw~~q~g--~~vipKS~--~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 230 KKYNKTPAQILLRWALQRG--VSVIPKSS--NPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred HHhCCCHHHHHHHHHHhCC--cEEEeccC--CHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 9999999999999999998 35688888 99999999999999999999999997765544
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=5.8e-48 Score=345.75 Aligned_cols=242 Identities=27% Similarity=0.449 Sum_probs=212.7
Q ss_pred cHHHHHHHHHcCCceeehHhHHH--------HHHHhccCCCCccceEEEccccCCC---CCCCHHHHHHHHHHHHhhcCC
Q 022088 10 DLPLLTWLIYMGLLKISMASSSI--------EFVERGHQSSWIRSEGDLTKWVPPP---VKMTSSIVRESIDVSRRRMDV 78 (303)
Q Consensus 10 ~~~lv~~Al~~Gi~~~DtA~~y~--------~~~~~~~~~~~r~~~~I~tK~~~~~---~~~~~~~i~~sve~SL~~Lg~ 78 (303)
..++|+.|++.|||+||||+.|+ |++++... .|++++|+||+++.. .+++++.+++++++||++||+
T Consensus 31 ~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~--~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~ 108 (285)
T cd06660 31 AAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG--PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGT 108 (285)
T ss_pred HHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC--CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999994 55666543 578999999998653 236899999999999999999
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHH
Q 022088 79 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELC 157 (303)
Q Consensus 79 d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~ 157 (303)
||||+|+||+|+.......++|++|++++++|+||+|||||++++.+.++... ..+|+++|++||++++..+.+++++|
T Consensus 109 ~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 188 (285)
T cd06660 109 DYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYC 188 (285)
T ss_pred CceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHH
Confidence 99999999999876655789999999999999999999999999999999876 36899999999999988876899999
Q ss_pred HHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHH
Q 022088 158 QLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAV 237 (303)
Q Consensus 158 ~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal 237 (303)
+++||++++|+||++|.++++...... .+ .......+..+++++++|++|+|+
T Consensus 189 ~~~gi~v~~~~~l~~g~l~~~~~~~~~-~~--------------------------~~~~~~~~~~~~~~~~~s~~q~al 241 (285)
T cd06660 189 REHGIGVIAYSPLAGGLLTGKYLPGAP-PP--------------------------EGDLLEALKEIAEKHGVTPAQVAL 241 (285)
T ss_pred HHcCcEEEEeccccCceecCCCCCCCC-CC--------------------------hhhHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999876544210 00 001347899999999999999999
Q ss_pred HHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHH
Q 022088 238 RYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 282 (303)
Q Consensus 238 ~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~ 282 (303)
+|++++|.++++|+|++ +++|+++|+++...+|++++++.|++
T Consensus 242 ~~~l~~p~~~~~i~g~~--~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 242 RWLLQQPGVTSVIPGAS--SPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred HHHhcCCCCeEEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99999999999999999 99999999999988999999999975
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-47 Score=340.50 Aligned_cols=232 Identities=15% Similarity=0.210 Sum_probs=195.6
Q ss_pred HHHHHHHHHcCCceeehHhHHHH----HHHhccCCCCccceEEEccccCC-------CCCCCHHHHHHHHHHHHhhcCCC
Q 022088 11 LPLLTWLIYMGLLKISMASSSIE----FVERGHQSSWIRSEGDLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~~----~~~~~~~~~~r~~~~I~tK~~~~-------~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
.++|+.|+++|||+||||+.|+. ++++......|++++|+||++.. ..+.+++.+++++++||+|||||
T Consensus 43 ~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td 122 (290)
T PRK10376 43 IAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPYPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLD 122 (290)
T ss_pred HHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcCCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999942 22222111237799999998631 23568999999999999999999
Q ss_pred cccEEEEecCCC-C---CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHH
Q 022088 80 CLDMLQFHWWDY-S---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAE 155 (303)
Q Consensus 80 ~iDl~~lH~~~~-~---~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~ 155 (303)
|||+|++|+++. + ...++++|++|++|+++||||+||||||++++++++... .+++++|++||++++.. +++++
T Consensus 123 ~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~ 200 (290)
T PRK10376 123 VLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRAD-DALID 200 (290)
T ss_pred eEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCCh-HHHHH
Confidence 999999998521 1 123679999999999999999999999999999998876 57899999999998764 57999
Q ss_pred HHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHH
Q 022088 156 LCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVV 235 (303)
Q Consensus 156 ~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ql 235 (303)
+|+++||++++|+||+++. + .. .+.++++|+++|+|++|+
T Consensus 201 ~~~~~gi~v~a~~pL~g~~------------~--------------------------~~--~~~l~~ia~~~~~t~aq~ 240 (290)
T PRK10376 201 ALARDGIAYVPFFPLGGFT------------P--------------------------LQ--SSTLSDVAASLGATPMQV 240 (290)
T ss_pred HHHHcCCEEEEeecCCCCC------------h--------------------------hh--hHHHHHHHHHhCCCHHHH
Confidence 9999999999999997431 0 00 267899999999999999
Q ss_pred HHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022088 236 AVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 286 (303)
Q Consensus 236 al~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~ 286 (303)
||+|+++++.++++|+|++ +++|+++|+++++++|++++++.|+++.++
T Consensus 241 al~w~l~~~~~~~~i~G~~--~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 241 ALAWLLQRSPNILLIPGTS--SVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred HHHHHHhCCCCeeEeeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 9999999877778999999 999999999999999999999999998653
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=5.8e-47 Score=337.10 Aligned_cols=227 Identities=17% Similarity=0.262 Sum_probs=198.0
Q ss_pred HHHHHHHHHcCCceeehHhHH-----HHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEE
Q 022088 11 LPLLTWLIYMGLLKISMASSS-----IEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ 85 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y-----~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~ 85 (303)
.++|+.|++.|||+||||..| +|++++... ..|++++|+||+++. +++.+++++++||++||+||||+|+
T Consensus 31 ~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~~-~~R~~~~i~tK~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~ 105 (275)
T PRK11565 31 ITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEAS-VAREELFITTKLWND----DHKRPREALEESLKKLQLDYVDLYL 105 (275)
T ss_pred HHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHcC-CCHHHEEEEEEecCc----chHHHHHHHHHHHHHhCCCceEEEE
Confidence 468999999999999999999 677776532 347799999998743 5689999999999999999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeE
Q 022088 86 FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 164 (303)
Q Consensus 86 lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~v 164 (303)
+|+|++....+.++|++|++|+++|+||+|||||+++++++++... ++++.++|++||++.+. .+++++|+++||++
T Consensus 106 lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~ 183 (275)
T PRK11565 106 MHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQT 183 (275)
T ss_pred ecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEE
Confidence 9999876554789999999999999999999999999999998765 56789999999999764 57999999999999
Q ss_pred EeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 022088 165 ITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQP 244 (303)
Q Consensus 165 ia~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~ 244 (303)
++|+||++|.- +. .+ .+.++++|+++|+|++|+||||+++++
T Consensus 184 ~a~spl~~G~~-~~-------~~------------------------------~~~l~~ia~~~g~s~aq~aL~w~l~~~ 225 (275)
T PRK11565 184 ESWSPLAQGGK-GV-------FD------------------------------QKVIRDLADKYGKTPAQIVIRWHLDSG 225 (275)
T ss_pred EEEccCCCCCc-cc-------cc------------------------------CHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 99999987731 00 00 167899999999999999999999997
Q ss_pred CCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022088 245 AVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 286 (303)
Q Consensus 245 ~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~ 286 (303)
. ++|+|++ +++|+++|+++++++|+++++++|+.+...
T Consensus 226 ~--~~I~g~~--~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 226 L--VVIPKSV--TPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred C--EeeCCCC--CHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 4 4799999 999999999999999999999999999754
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.7e-47 Score=339.03 Aligned_cols=248 Identities=16% Similarity=0.077 Sum_probs=199.6
Q ss_pred HHHHHHHHHcCCceeehHhHHH------HHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEE
Q 022088 11 LPLLTWLIYMGLLKISMASSSI------EFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDML 84 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~------~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~ 84 (303)
.++|+.|+++|||+||||+.|+ |++++. ..+++++|+||.. +.+++.+++++++||+||||||||+|
T Consensus 35 ~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~---~~~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~ 107 (292)
T PRK14863 35 RDILNIAARAGLSVLDASGLFGRAETVLGQLIPR---PVPFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAI 107 (292)
T ss_pred HHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc---CCceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeE
Confidence 6889999999999999999996 334432 1234788999853 34789999999999999999999999
Q ss_pred EEecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChh-hhHHHHHHHhCC
Q 022088 85 QFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGV 162 (303)
Q Consensus 85 ~lH~~~~~-~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~-~~~~~~~~~~gi 162 (303)
++|+|+.. .+..++++++|++|+++||||+|||||++++++..+... .+|+++|++||++++..+ .+++++|+++||
T Consensus 108 ~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi 186 (292)
T PRK14863 108 LVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGV 186 (292)
T ss_pred EEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhc-CCCCEEEecCCcccccccccchHHHHHhCCC
Confidence 99999763 332367899999999999999999999999998887654 689999999999998764 469999999999
Q ss_pred eEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 022088 163 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILD 242 (303)
Q Consensus 163 ~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~ 242 (303)
++++|+||++|+|++.... .+ ..++ .....+..+.+++.+.++|++|+||+|+++
T Consensus 187 ~v~a~spl~~G~L~~~~~~----~~-----------~~~~----------~~~~~~~~~~~~~~~~~~s~aqlalaw~l~ 241 (292)
T PRK14863 187 EVHLRSIFLNGLLFLPPDR----VP-----------AQLK----------GASGRLSRVRRMIAEGRSDPLQAALGFALS 241 (292)
T ss_pred EEEEechhhCccccCCccc----Cc-----------cchh----------hhhHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 9999999999999753110 00 0000 011335677888888999999999999999
Q ss_pred CCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCCccc
Q 022088 243 QPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDLLGV 293 (303)
Q Consensus 243 ~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~~~~~~ 293 (303)
+|.|+++|+|++ +++|+++|+++.+.+++++.+++|..=....-+|..|
T Consensus 242 ~p~v~~~I~G~~--~~~ql~~n~~a~~~~~~~~~~~~l~~~~~~~~~~~~~ 290 (292)
T PRK14863 242 RPEGSAVLVGVN--SAAELSAVVAAASSPPPDLDWDDMAIDDPVALDPRRW 290 (292)
T ss_pred CCCCCeEEEecC--CHHHHHHHHHHHhcCCCccchhhccCChhhccCcccc
Confidence 999999999999 9999999999999899998887765432223333344
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-44 Score=302.86 Aligned_cols=239 Identities=21% Similarity=0.276 Sum_probs=210.4
Q ss_pred HHHHHHHHHcCCceeehHhHHHHH--------HHhccCCCCccceEEEccccCC----------CCCCCHHHHHHHHHHH
Q 022088 11 LPLLTWLIYMGLLKISMASSSIEF--------VERGHQSSWIRSEGDLTKWVPP----------PVKMTSSIVRESIDVS 72 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~~~--------~~~~~~~~~r~~~~I~tK~~~~----------~~~~~~~~i~~sve~S 72 (303)
..+|+.|++.||+.||-|..|+|. ++.- .+..||++.|+||++.. .++.+.++|.+|+|+|
T Consensus 34 ~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l-~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~S 112 (298)
T COG4989 34 LSFIETALELGITTFDHADIYGGYQCEALFGEALKL-APGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQS 112 (298)
T ss_pred HHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhc-ChhhhhheEeeeccccccccccccccccccCcHHHHHHHHHHH
Confidence 457999999999999999999662 3333 35668899999999832 3577999999999999
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccCh-h
Q 022088 73 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-Q 150 (303)
Q Consensus 73 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~-~ 150 (303)
|+||+|||+|+++||+||+.+. -+++.+|+..|++.|||||+|||||++.+++-+.+. .-+++.||++.|+++... .
T Consensus 113 L~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~ 191 (298)
T COG4989 113 LINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLL 191 (298)
T ss_pred HHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccc
Confidence 9999999999999999999988 599999999999999999999999999999888876 456899999999998654 5
Q ss_pred hhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhC-
Q 022088 151 QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG- 229 (303)
Q Consensus 151 ~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g- 229 (303)
.+.+++|+++.|..++||||++|-+... + +.++.+.+++..+|.++|
T Consensus 192 DGtLd~~q~~~v~pmaWSpl~gG~~F~g---~-----------------------------~~~q~l~~~l~~ia~e~ga 239 (298)
T COG4989 192 DGTLDYCQQLRVRPMAWSPLGGGGLFLG---D-----------------------------DKFQRLRKVLDRIAEEYGA 239 (298)
T ss_pred cchHHHHHHcCCCcccccccCCCccccC---C-----------------------------cchHHHHHHHHHHHHHhCc
Confidence 5799999999999999999998833221 1 235566789999999999
Q ss_pred CCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 022088 230 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 285 (303)
Q Consensus 230 ~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~ 285 (303)
.|.+++|++|++.+|.-..+|+|+. +++++++.++|++..|+.+++-+|-.+..
T Consensus 240 ~s~~~VaiAWllR~Pa~~~PiiGt~--~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 240 VSITAVAIAWLLRHPAKPQPIIGTG--NLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred ccHHHHHHHHHHhCcCcccceecCC--CHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 7999999999999999999999999 99999999999999999999999988764
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.4e-40 Score=288.81 Aligned_cols=232 Identities=18% Similarity=0.238 Sum_probs=199.8
Q ss_pred HHHHHHHHHcCCceeehHhHH--------HHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCccc
Q 022088 11 LPLLTWLIYMGLLKISMASSS--------IEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLD 82 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y--------~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iD 82 (303)
.++|++|++.||||||||-.| +|+++..+. |++++++||+...+ --+++.+++-++++|++||+||+|
T Consensus 37 ~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~---Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D 112 (391)
T COG1453 37 NETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGY---REKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYID 112 (391)
T ss_pred HHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcc---cceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhh
Confidence 468999999999999999777 777888775 88999999997432 337899999999999999999999
Q ss_pred EEEEecCCCCCCcHH-----HHHHHHHHHHHcCCccEEEecCCCH-HHHHHHHHcCCCeeeecccccccccChhh--hHH
Q 022088 83 MLQFHWWDYSNPGYL-----DALNHLTDLKEEGKIKTVALTNFDT-ERLRIILENGIPVVSNQVQHSVVDMRPQQ--KMA 154 (303)
Q Consensus 83 l~~lH~~~~~~~~~~-----~~~~al~~l~~~G~ir~iGvS~~~~-~~l~~~~~~~~~~~~~q~~~n~l~~~~~~--~~~ 154 (303)
+|+||..... . ++ ++++.++++|++|+||++|+|.|+. +.+.+++.. .+++++|++||.+++.... +.+
T Consensus 113 ~yliH~l~~e-~-~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l 189 (391)
T COG1453 113 YYLIHGLNTE-T-WEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGL 189 (391)
T ss_pred hhhhccccHH-H-HHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhc-CCcceEEeeeeeeccchhcccHHH
Confidence 9999997652 1 22 5789999999999999999999865 778888887 6799999999999987653 789
Q ss_pred HHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhC--CCH
Q 022088 155 ELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSI 232 (303)
Q Consensus 155 ~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~ 232 (303)
++|.++|++|+.++|+.+|-|..+ .| +++.+++++.. .||
T Consensus 190 ~~A~~~~~gI~IMeP~~gG~l~~~-------vP-------------------------------~~~~~l~~~~~~~~sP 231 (391)
T COG1453 190 KYAASKGLGIFIMEPLDGGGLLYN-------VP-------------------------------EKLEELCRPASPKRSP 231 (391)
T ss_pred HHHHhCCCcEEEEeeCCCCCcccC-------CC-------------------------------HHHHHHHHhcCCCCCc
Confidence 999999999999999999866442 33 77888888876 589
Q ss_pred HHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC--C-CCHHHHHHHHHHHhcCCC
Q 022088 233 PVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--S-LDEDDVNSIQEVTKKGKD 289 (303)
Q Consensus 233 ~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~--~-L~~e~~~~i~~~~~~~~~ 289 (303)
+..|+||++++|.|+++++||+ +++|++||++..+. | ||++|...|+++.+..+.
T Consensus 232 ~~wa~R~~~shp~V~~vlsGm~--~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~ 289 (391)
T COG1453 232 AEWALRYLLSHPEVTTVLSGMN--TPEQLEENLKIASELEPSLTEEELQILEKVEEIYRE 289 (391)
T ss_pred HHHHHHHHhcCCCeEEEecCCC--CHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999866 4 999999988888765443
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.8e-38 Score=268.08 Aligned_cols=256 Identities=17% Similarity=0.155 Sum_probs=204.8
Q ss_pred HHHHHHHHHcCCceeehHhHHHHHH----H-hccCCCCccceEEEccccCC------CCCCCHHHHHHHHHHHHhhcCCC
Q 022088 11 LPLLTWLIYMGLLKISMASSSIEFV----E-RGHQSSWIRSEGDLTKWVPP------PVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~~~~----~-~~~~~~~r~~~~I~tK~~~~------~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
+..|..|+++|||+|||++-|++.. + .......|+.+||+||++.. -.+++++.+++|+++||+||++|
T Consensus 57 i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqld 136 (342)
T KOG1576|consen 57 ILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLD 136 (342)
T ss_pred HHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCc
Confidence 3445669999999999999995521 1 11123457799999999853 25889999999999999999999
Q ss_pred cccEEEEecCCCC---CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC-Ceeee--cccccccccChhhhH
Q 022088 80 CLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI-PVVSN--QVQHSVVDMRPQQKM 153 (303)
Q Consensus 80 ~iDl~~lH~~~~~---~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~~--q~~~n~l~~~~~~~~ 153 (303)
|+|++++|..+.. ...+.|++.+|+++|++||||+|||+.++...+.++.+.+. ..+++ .++|++.+... -..
T Consensus 137 yvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~ 215 (342)
T KOG1576|consen 137 YVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRY 215 (342)
T ss_pred eeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHH
Confidence 9999999997654 23367999999999999999999999999999999998721 34444 48898876443 357
Q ss_pred HHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHH
Q 022088 154 AELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 233 (303)
Q Consensus 154 ~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 233 (303)
++..+..|++|+.-++++.|+|+..-.+..||.. +.+.+...+-.++|++.|+..+
T Consensus 216 ~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS------------------------~Elk~~a~~aa~~Cq~rnv~l~ 271 (342)
T KOG1576|consen 216 LKRLKSKGVGVINASALSMGLLTNQGPPPWHPAS------------------------DELKEAAKAAAEYCQSRNVELG 271 (342)
T ss_pred HHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCC------------------------HHHHHHHHHHHHHHHHcCccHH
Confidence 7888999999999999999999987655544333 3466667888899999999999
Q ss_pred HHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCH----HHHHHHHHHHhcCCCCcccc
Q 022088 234 VVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE----DDVNSIQEVTKKGKDLLGVI 294 (303)
Q Consensus 234 qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~----e~~~~i~~~~~~~~~~~~~~ 294 (303)
.+|+.|.++.+++.++++|++ +.++|+.|+++....||. +....+++.++..++ ..|.
T Consensus 272 kLA~~Yam~~~~~~~~lvGm~--s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~~kn-~~W~ 333 (342)
T KOG1576|consen 272 KLAMYYAMSLPGVSTVLVGMS--SRQLLRINLDANFDRLSSKHEQEVLRILREILKETKN-EEWE 333 (342)
T ss_pred HHHHHHHHccCCcceEEecCc--hHHHHHHHHHhhhccccchhHHHHHHHHHHHhhhhcc-CCCC
Confidence 999999999999999999999 999999999987666776 333445555555443 4586
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.95 E-value=2.3e-05 Score=66.53 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+.+.|+.||+++.+|+|..+|||.|+..++++++.. .+.|..+|++..-.+.-+ .++.++|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 458999999999999999999999999999999987 778999999988755443 589999999999998775
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=92.02 E-value=1.1 Score=37.62 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=101.7
Q ss_pred hcHHHHHHHHHcCCceeehHhHH--HHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHH-----------HHHhh
Q 022088 9 LDLPLLTWLIYMGLLKISMASSS--IEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESID-----------VSRRR 75 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~DtA~~y--~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve-----------~SL~~ 75 (303)
.|+.+|..-++-|-+.+|..-.- +-.++.... ++. ... -+.+++.+.+++. +.|..
T Consensus 2 ~D~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----~v~----g~G--vEid~~~v~~cv~rGv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 2 PDLQIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-----QVD----GYG--VEIDPDNVAACVARGVSVIQGDLDEGLAD 70 (193)
T ss_pred chHHHHHHHcCCCCEEEecCCCchHHHHHHHHhc-----CCe----EEE--EecCHHHHHHHHHcCCCEEECCHHHhHhh
Confidence 38899999999999999974222 223333321 110 001 1345555555554 45555
Q ss_pred cCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccCh-----
Q 022088 76 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP----- 149 (303)
Q Consensus 76 Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~----- 149 (303)
..-+.+|.+.+...= ..+...-+.|+++.+-|+---+++.||.-+..+.-+-. |--|..-+.+|+-++...
T Consensus 71 f~d~sFD~VIlsqtL---Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~T 147 (193)
T PF07021_consen 71 FPDQSFDYVILSQTL---QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCT 147 (193)
T ss_pred CCCCCccEEehHhHH---HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCccccc
Confidence 555666666665421 11233445577888889988899999999888876664 556888889999887543
Q ss_pred hhhHHHHHHHhCCeEEeeccccccc
Q 022088 150 QQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 150 ~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
-.+.-++|++.|+.+.-..++.++.
T Consensus 148 i~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 148 IKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 3578899999999999999997764
No 20
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=87.37 E-value=11 Score=36.00 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHHcCCCe
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 135 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~ 135 (303)
.++++.+.+.+++....++ .++.+-+-.+.......+.+++.+..++++..=.++.+++.. ++.++++...+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 4688999999888877652 345566666433333235678889999988322367777654 57777776653 3
Q ss_pred eeecccccccccChh---------------------------hhHHHHHHHhCCeEEeeccccccc
Q 022088 136 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 136 ~~~q~~~n~l~~~~~---------------------------~~~~~~~~~~gi~via~spl~~G~ 174 (303)
+.+.+.++-+++... .+-++.+.+.|+.+....++-.|+
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 455555554432111 123456777888888888876663
No 21
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.09 E-value=9.2 Score=33.35 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+...+-+ +.|..+|+++|++-..-.+... +...+.++.++.+++.+ .++...++....+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 34555555444 4588899999888766544222 33456778888999988 6777777776677788887764 344
Q ss_pred ecccccccc--------cC------hhhhHHHHHHHhCCeEEeec
Q 022088 138 NQVQHSVVD--------MR------PQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 138 ~q~~~n~l~--------~~------~~~~~~~~~~~~gi~via~s 168 (303)
+++.+..-+ +. .-...++++++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455444331 11 12467888999998766554
No 22
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.30 E-value=34 Score=30.68 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeec
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q 139 (303)
++.+. +..+-+.|.++|+++|++-.++.|... +...+.++.+..+.+...++..++. .+...++.+.+.+.+...+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 34443 445666699999999999755555322 2123345555565544456666654 57888888888754432222
Q ss_pred cccccc------ccCh------hhhHHHHHHHhCCeEEeecccc
Q 022088 140 VQHSVV------DMRP------QQKMAELCQLTGVKLITYGTVM 171 (303)
Q Consensus 140 ~~~n~l------~~~~------~~~~~~~~~~~gi~via~spl~ 171 (303)
...|-. .+.. -.+.+++++++|+.+.++-..+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~ 143 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCV 143 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 222211 1111 2368999999999886544443
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.98 E-value=2 Score=40.11 Aligned_cols=81 Identities=10% Similarity=-0.016 Sum_probs=50.7
Q ss_pred HhcHHHHHHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEe
Q 022088 8 MLDLPLLTWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFH 87 (303)
Q Consensus 8 ~~~~~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH 87 (303)
.+++.++++|+++|++++||+...-..|.... ..++..+.+..-+|..|+ .+--.....+++--+ .+++||+|..+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~-~a~~Agit~v~~~G~dPG-i~nv~a~~a~~~~~~--~i~si~iy~g~ 154 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPPWKLDE-EAKKAGITAVLGCGFDPG-ITNVLAAYAAKELFD--EIESIDIYVGG 154 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchhhhhhH-HHHHcCeEEEcccCcCcc-hHHHHHHHHHHHhhc--cccEEEEEEec
Confidence 46789999999999999999844422111110 111225777777776543 333333333333322 58999999999
Q ss_pred cCCCC
Q 022088 88 WWDYS 92 (303)
Q Consensus 88 ~~~~~ 92 (303)
-|++.
T Consensus 155 ~g~~~ 159 (389)
T COG1748 155 LGEHG 159 (389)
T ss_pred CCCCC
Confidence 88766
No 24
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=82.94 E-value=0.81 Score=41.96 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=39.1
Q ss_pred cCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCe
Q 022088 109 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 163 (303)
Q Consensus 109 ~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~ 163 (303)
-|+|||+||--++.+.+.++.+..-.-+..+.+..+|-...+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999999887622334444444444333455788888888875
No 25
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=81.45 E-value=19 Score=31.75 Aligned_cols=67 Identities=4% Similarity=-0.054 Sum_probs=47.2
Q ss_pred HHHHHHcCCccEEEe--cCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 103 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 103 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
|.+-.++|+. -+|+ ..-++...+.+...|.++.++=.+.++++...-..++..|+..|+..+.+-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444445774 3443 33455555555555889999999999998776677888999999998888764
No 26
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.62 E-value=47 Score=29.96 Aligned_cols=142 Identities=8% Similarity=-0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCceeehH-h-------HHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccE
Q 022088 12 PLLTWLIYMGLLKISMA-S-------SSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDM 83 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA-~-------~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl 83 (303)
+.++.+++.|++.|..- + ..+. .+++..+ ++-|.-+... .++.+..+ .+-+.|++.+ +
T Consensus 140 ~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~-~lr~~~g----~~~l~vD~n~---~~~~~~A~-~~~~~l~~~~-----l 205 (316)
T cd03319 140 AAAKKAAKRGFPLLKIKLGGDLEDDIERIR-AIREAAP----DARLRVDANQ---GWTPEEAV-ELLRELAELG-----V 205 (316)
T ss_pred HHHHHHHHcCCCEEEEEeCCChhhHHHHHH-HHHHhCC----CCeEEEeCCC---CcCHHHHH-HHHHHHHhcC-----C
Confidence 45677778899988752 1 1111 1222211 2334445422 34554432 2334455554 4
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhC
Q 022088 84 LQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTG 161 (303)
Q Consensus 84 ~~lH~~~~~~~~~~~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~g 161 (303)
.++-.|-+. +-++.+.+|++...|. ..|=+-++.+.++.+++. ...+++|+.-+.+-- ..-.++..+|+++|
T Consensus 206 ~~iEeP~~~-----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-~~~d~v~~~~~~~GGi~~~~~~~~~a~~~g 279 (316)
T cd03319 206 ELIEQPVPA-----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-GAYDGINIKLMKTGGLTEALRIADLARAAG 279 (316)
T ss_pred CEEECCCCC-----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEeccccCCHHHHHHHHHHHHHcC
Confidence 445554322 2245677888877666 445666889999999886 347788887655411 12357899999999
Q ss_pred CeEEeecccccc
Q 022088 162 VKLITYGTVMGG 173 (303)
Q Consensus 162 i~via~spl~~G 173 (303)
+.++..+-+..|
T Consensus 280 i~~~~~~~~~~~ 291 (316)
T cd03319 280 LKVMVGCMVESS 291 (316)
T ss_pred CCEEEECchhhH
Confidence 999987655444
No 27
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=78.98 E-value=21 Score=30.50 Aligned_cols=93 Identities=9% Similarity=-0.089 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC
Q 022088 12 PLLTWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 91 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~ 91 (303)
.+.+.|.+.|+.-+-..+.|+..+....... ++-|+|=++.+.+..+.+.-...+++.++ +|.|-||+++-...-.
T Consensus 22 ~lc~~A~~~~~~avcv~p~~v~~a~~~l~~~---~v~v~tVigFP~G~~~~~~K~~E~~~Av~-~GAdEiDvv~n~g~l~ 97 (211)
T TIGR00126 22 TLCAQAKTYKFAAVCVNPSYVPLAKELLKGT---EVRICTVVGFPLGASTTDVKLYETKEAIK-YGADEVDMVINIGALK 97 (211)
T ss_pred HHHHHHHhhCCcEEEeCHHHHHHHHHHcCCC---CCeEEEEeCCCCCCCcHHHHHHHHHHHHH-cCCCEEEeecchHhhh
Confidence 5778899999999888899987654433211 57888888887777677777777777665 7999999987654322
Q ss_pred CCCcHHHHHHHHHHHHHc
Q 022088 92 SNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 92 ~~~~~~~~~~al~~l~~~ 109 (303)
. ..++.+.+.+.+.++.
T Consensus 98 ~-g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 98 D-GNEEVVYDDIRAVVEA 114 (211)
T ss_pred C-CcHHHHHHHHHHHHHH
Confidence 2 2356777777777654
No 28
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=78.72 E-value=6.8 Score=33.52 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEe----cCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGv----S~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
.++..++|.+|+ +.+|.. |.+....++.+.+. |. ..|.|+.....++++...-+.|..++.-+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 556667777776 445543 44555666666665 44 2456777666678888888899988888888
Q ss_pred cccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHH
Q 022088 171 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 233 (303)
Q Consensus 171 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 233 (303)
+.|+-. ..... +.-.+.++.++.+.++||+.|+
T Consensus 145 a~gL~~-~~lGr-----------------------------~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDE-SWLGR-----------------------------RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCCh-HHhCC-----------------------------ccCHHHHHHHHHHHHhcCCCcc
Confidence 888521 11100 1112446899999999998763
No 29
>PRK08392 hypothetical protein; Provisional
Probab=77.20 E-value=44 Score=28.33 Aligned_cols=139 Identities=13% Similarity=0.092 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCceeehH-----------hHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC
Q 022088 11 LPLLTWLIYMGLLKISMA-----------SSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA-----------~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
-+.++.|.+.|++.+-.+ ..|..+..+-... .+-++.+..-+...+ +. ....++.+++ .|
T Consensus 17 ~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~-~~i~il~GiE~~~~~-----~~-~~~~~~~~~~--~D 87 (215)
T PRK08392 17 RDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEE-SEIVVLAGIEANITP-----NG-VDITDDFAKK--LD 87 (215)
T ss_pred HHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhc-cCceEEEeEEeeecC-----Cc-chhHHHHHhh--CC
Confidence 368899999999877332 3455543322211 111334333333211 11 2233344443 45
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC--------CHHHHHHHHH----cCCCeeeeccccccccc
Q 022088 80 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF--------DTERLRIILE----NGIPVVSNQVQHSVVDM 147 (303)
Q Consensus 80 ~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~--------~~~~l~~~~~----~~~~~~~~q~~~n~l~~ 147 (303)
|+ +.-+|.+.. .+....-.+.+.++.+.|.+.-+|=-.. ..+.+.++++ .+..+.+|- .+ +
T Consensus 88 ~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~----~ 160 (215)
T PRK08392 88 YV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY----R 160 (215)
T ss_pred EE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC----C
Confidence 65 666785422 2224566788888889998777764221 1123333332 365566654 12 2
Q ss_pred ChhhhHHHHHHHhCCeEE
Q 022088 148 RPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 148 ~~~~~~~~~~~~~gi~vi 165 (303)
.+...+++.|++.|+.++
T Consensus 161 ~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 161 VPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCHHHHHHHHHcCCEEE
Confidence 344578999999997654
No 30
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=75.63 E-value=36 Score=29.83 Aligned_cols=62 Identities=5% Similarity=-0.134 Sum_probs=43.7
Q ss_pred HcCCccEEE--ecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 108 EEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 108 ~~G~ir~iG--vS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
++|+. .+| ++.-++...+.+...|.++.++=.+.++++...-..++..++..|+..+.+-|-
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 34654 344 333455555555555888999999999998766667888888889888888764
No 31
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=71.88 E-value=84 Score=29.05 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCC--CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~--~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
++.+ -+..+-+.|.++|+++|++-..-+|.. ...+..++++++ ++...++..++. .+...++.+++.+.+...
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcCEEE
Confidence 3444 556666779999999999875444421 112233444444 443345555664 588899999887544222
Q ss_pred eccccccc------ccCh------hhhHHHHHHHhCCeEEeec
Q 022088 138 NQVQHSVV------DMRP------QQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 138 ~q~~~n~l------~~~~------~~~~~~~~~~~gi~via~s 168 (303)
+-+.-|.. ++.. -.+++++++++|+.+.++-
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 22222211 1111 1368899999998886444
No 32
>PRK07945 hypothetical protein; Provisional
Probab=71.71 E-value=82 Score=28.88 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=50.2
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---------------CCHHH-HHHHHHcCCCeeeeccc
Q 022088 78 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTER-LRIILENGIPVVSNQVQ 141 (303)
Q Consensus 78 ~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~---------------~~~~~-l~~~~~~~~~~~~~q~~ 141 (303)
.||+ +.-+|+.... . ..+..+.|.++.+.|.+.-+|=-. +..+. ++.+.+.+..+.+|--.
T Consensus 191 ~D~v-IgSvH~~~~~-~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~ 267 (335)
T PRK07945 191 LDVV-VASVHSKLRM-D-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRP 267 (335)
T ss_pred CCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCC
Confidence 5666 6677986432 2 356668888888889888888431 11122 23333336556666433
Q ss_pred ccccccChhhhHHHHHHHhCCeEE
Q 022088 142 HSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
. ...+...+++.|++.|+.++
T Consensus 268 ~---r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 268 E---RRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred C---CCCChHHHHHHHHHcCCeEE
Confidence 3 23455679999999998754
No 33
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.56 E-value=62 Score=28.67 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=45.3
Q ss_pred HHHHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 103 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 103 l~~l~~~G~ir~iG--vS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
|.+-.++|+.- +| +..-++...+.+...|.++.++=.+.++++...-..++..++..|+..+.+-|
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 33444457653 44 33345555555555588899999999999876666788888888988887766
No 34
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=71.33 E-value=70 Score=27.96 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=79.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 022088 54 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 133 (303)
Q Consensus 54 ~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 133 (303)
.+..+.++.+...+-.+-..+-+|+|+|=|=.+..+....++..+++++.++|.++|.+- +=+++.++...+++.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G- 144 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG- 144 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-
Confidence 344457788988888999999999999999989888888888899999999999999854 346777888888888763
Q ss_pred CeeeecccccccccCh---hhhHHHHHHH-hCCeEEee
Q 022088 134 PVVSNQVQHSVVDMRP---QQKMAELCQL-TGVKLITY 167 (303)
Q Consensus 134 ~~~~~q~~~n~l~~~~---~~~~~~~~~~-~gi~via~ 167 (303)
+++++.-=+++-... ..+++...++ .++.|++-
T Consensus 145 -~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 145 -CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred -CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 444433223332111 2355566555 46777654
No 35
>PRK07328 histidinol-phosphatase; Provisional
Probab=70.28 E-value=76 Score=27.91 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCC------------CcHHHHH----HHHHHHHHcCCccEEEecCC-------C-
Q 022088 66 RESIDVSRRRMDVPCLDMLQFHWWDYSN------------PGYLDAL----NHLTDLKEEGKIKTVALTNF-------D- 121 (303)
Q Consensus 66 ~~sve~SL~~Lg~d~iDl~~lH~~~~~~------------~~~~~~~----~al~~l~~~G~ir~iGvS~~-------~- 121 (303)
...+++.|++-..||+ +.-+|+.+... .+.++++ +.+.++.+.|.+.-+|=-.. .
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 4555566777777777 77789853210 1112333 35777888888888774432 0
Q ss_pred ---H---HH-HHHHHHcCCCeeeecccc--cccccChhhhHHHHHHHhCCeEE
Q 022088 122 ---T---ER-LRIILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 122 ---~---~~-l~~~~~~~~~~~~~q~~~--n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
. +. ++.+.+.+..+.+|--.+ ..-...+...+++.|++.|+.++
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~it 225 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVV 225 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEE
Confidence 1 11 223333355555554321 11122344578999999988754
No 36
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=69.45 E-value=16 Score=31.06 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=45.3
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeeccccc
Q 022088 73 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 143 (303)
Q Consensus 73 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n 143 (303)
+..+|.||+=+.+......... .+....+.+.. .+.++.+||. |.+++.+.++.+. ..++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 4559999999874443222222 34444444433 3568899997 7888999998876 67899999864
No 37
>PRK00208 thiG thiazole synthase; Reviewed
Probab=69.35 E-value=79 Score=27.71 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=79.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 022088 54 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 133 (303)
Q Consensus 54 ~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 133 (303)
.+..+..+.+...+-.+-..+-+++++|=|=.+..+....++..+++++.++|.++|.+- +=+++.++...+++.+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G- 144 (250)
T PRK00208 67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG- 144 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-
Confidence 344457788999888999999999999999989888888888899999999999999864 346777888888887763
Q ss_pred CeeeecccccccccCh---hhhHHHHHHHh-CCeEEee
Q 022088 134 PVVSNQVQHSVVDMRP---QQKMAELCQLT-GVKLITY 167 (303)
Q Consensus 134 ~~~~~q~~~n~l~~~~---~~~~~~~~~~~-gi~via~ 167 (303)
+++++.-=+++-... ..+.++..++. ++.|++-
T Consensus 145 -~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 145 -CAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred -CCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 444433222222110 23456666664 7777754
No 38
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.46 E-value=61 Score=26.14 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=54.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--C-CCeeeeccccccccc---ChhhhHHHHH
Q 022088 84 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-IPVVSNQVQHSVVDM---RPQQKMAELC 157 (303)
Q Consensus 84 ~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~-~~~~~~q~~~n~l~~---~~~~~~~~~~ 157 (303)
+++..|.... .+++++...+=-++.-|+++=|.+.+......+.+. + .++.++--++..-.. ..+.++-+..
T Consensus 2 ~yf~~pG~eN--T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L 79 (186)
T COG1751 2 VYFEKPGKEN--TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKEL 79 (186)
T ss_pred ccccCCcccc--hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHH
Confidence 3445554332 467777555555677899999888777777666665 2 344444433332221 2256788999
Q ss_pred HHhCCeEEeecccccc
Q 022088 158 QLTGVKLITYGTVMGG 173 (303)
Q Consensus 158 ~~~gi~via~spl~~G 173 (303)
+++|..+..-|-..+|
T Consensus 80 ~erGa~v~~~sHalSg 95 (186)
T COG1751 80 KERGAKVLTQSHALSG 95 (186)
T ss_pred HHcCceeeeehhhhhc
Confidence 9999988876654444
No 39
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=67.69 E-value=49 Score=28.42 Aligned_cols=92 Identities=11% Similarity=-0.009 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC
Q 022088 12 PLLTWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 91 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~ 91 (303)
.+++.|.+.|+.-+-..+.|+..+.....+. .+-|+|=++.+.+..+.+.-...+++.++ .|.+-||++ +.....
T Consensus 26 ~~~~~A~~~~~~avcv~p~~v~~a~~~l~~~---~v~v~tVigFP~G~~~~~~K~~e~~~Ai~-~GA~EiD~V-in~~~~ 100 (221)
T PRK00507 26 KLCDEAKEYGFASVCVNPSYVKLAAELLKGS---DVKVCTVIGFPLGANTTAVKAFEAKDAIA-NGADEIDMV-INIGAL 100 (221)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHhCCC---CCeEEEEecccCCCChHHHHHHHHHHHHH-cCCceEeee-ccHHHh
Confidence 5778899999999988899987654433211 57788888776655555555555555554 889999965 554444
Q ss_pred CCCcHHHHHHHHHHHHH
Q 022088 92 SNPGYLDALNHLTDLKE 108 (303)
Q Consensus 92 ~~~~~~~~~~al~~l~~ 108 (303)
...+++.+.+.+..+++
T Consensus 101 ~~g~~~~v~~ei~~v~~ 117 (221)
T PRK00507 101 KSGDWDAVEADIRAVVE 117 (221)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 44456777777777775
No 40
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=67.61 E-value=25 Score=29.86 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeeeec
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~q 139 (303)
+++...+ +-+.|-+-|++.+.+=+ . .++.++.+++++++..=-.+|..+ .++++++.+++.|.+|.+
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~------~---t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-- 85 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL------R---TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-- 85 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC------C---CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE--
Confidence 4454443 44566777776655543 1 134556667777664446789886 588999999998766652
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEe
Q 022088 140 VQHSVVDMRPQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 140 ~~~n~l~~~~~~~~~~~~~~~gi~via 166 (303)
.+....+++++|+++|+.++.
T Consensus 86 ------sP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 ------SPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ------CCCCCHHHHHHHHHcCCcEEC
Confidence 223356899999999998774
No 41
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.96 E-value=23 Score=29.96 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeeeec
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~q 139 (303)
+++...+- -+.|-+-|+..+.+=+ .. .+..+.+++++++..=-.||+.+ .+.++++++++.|.+|.+
T Consensus 14 ~~~~a~~i-a~al~~gGi~~iEit~------~t---p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPL-ARALAAGGLPAIEITL------RT---PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-- 81 (201)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeC------CC---ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--
Confidence 44544443 3456666766555432 12 34556677777664446789886 588999999998766543
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 022088 140 VQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 140 ~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
.+....+++++|+++||.++
T Consensus 82 ------SP~~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 82 ------SPGTTQELLAAANDSDVPLL 101 (201)
T ss_pred ------CCCCCHHHHHHHHHcCCCEe
Confidence 23445689999999999887
No 42
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.78 E-value=91 Score=27.50 Aligned_cols=104 Identities=7% Similarity=0.030 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC------CCcHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHH
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS------NPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIIL 129 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~------~~~~~~~~~al~~l~~~G~ir~iGvS~~~---~~~l~~~~ 129 (303)
.++.+. +..+-+.|.++|+|+|++-+....... ..+ .+.++.+.+..+ +..+..+++... .+.+..+.
T Consensus 16 ~f~~~~-~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 16 DFGDEF-VKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred cCCHHH-HHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 446554 455666699999999999776543211 011 355555555443 346666666543 46666665
Q ss_pred HcCCCeeeecccccccccChhhhHHHHHHHhCCeEEee
Q 022088 130 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 130 ~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~ 167 (303)
..+++..-+...-+-+ ..-.+.+++++++|+.+...
T Consensus 93 ~~gv~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 GSVVDMIRVAFHKHEF--DEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred cCCcCEEEEecccccH--HHHHHHHHHHHHCCCeEEEE
Confidence 5544433333333322 22356899999999876543
No 43
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=66.47 E-value=47 Score=28.26 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=53.9
Q ss_pred hhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEec-CCCHHHHHHHHHcCCCeeeecccccccccChhh
Q 022088 74 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQ 151 (303)
Q Consensus 74 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~ 151 (303)
..+|.||+=+.+.-....... .+ ...++.+.-. ++.+||. |.+.+.+.++++. ..++++|++-.. ..
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs--~~---~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e-----~~ 87 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVS--PE---QAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE-----DP 87 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCC--HH---HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----CH
Confidence 458889987766552112222 22 3344444433 8899998 6678889998886 789999998763 23
Q ss_pred hHHHHHHHhC-CeEEeeccc
Q 022088 152 KMAELCQLTG-VKLITYGTV 170 (303)
Q Consensus 152 ~~~~~~~~~g-i~via~spl 170 (303)
+.++..++.. +.++-.-+.
T Consensus 88 ~~~~~l~~~~~~~v~kai~v 107 (208)
T COG0135 88 EYIDQLKEELGVPVIKAISV 107 (208)
T ss_pred HHHHHHHhhcCCceEEEEEe
Confidence 4566666554 555543333
No 44
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=64.33 E-value=24 Score=31.52 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhH
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 265 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~ 265 (303)
.+|.++|+++|. ++.++-..|+-... ...+..|+| +|+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGAS--TP~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGAS--TPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TT--S-HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCC--CCHHHHHHH
Confidence 688999999875 68999999998876 456788999 998876654
No 45
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=64.01 E-value=87 Score=26.28 Aligned_cols=129 Identities=10% Similarity=-0.064 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC
Q 022088 12 PLLTWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 91 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~ 91 (303)
++++.|.+.|+.-+=+.+.++..+...... . .+.+.+=.+.+.+..+.+....++++.++ +|.|-+|++.-=..-.
T Consensus 21 ~~~~~a~~~~~~av~v~p~~v~~~~~~l~~-~--~~~v~~~~~fp~g~~~~~~k~~eve~A~~-~GAdevdvv~~~g~~~ 96 (203)
T cd00959 21 KLCDEAKEYGFAAVCVNPCFVPLAREALKG-S--GVKVCTVIGFPLGATTTEVKVAEAREAIA-DGADEIDMVINIGALK 96 (203)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHHHcCC-C--CcEEEEEEecCCCCCcHHHHHHHHHHHHH-cCCCEEEEeecHHHHh
Confidence 477888888888887778887764332211 1 46666666655555567778888998887 6999999986543211
Q ss_pred CCCcHHHHHHHHHHHHHc--CCccE--EEecCCCHHHHHHHHHc--CCCeeeeccc--cccc
Q 022088 92 SNPGYLDALNHLTDLKEE--GKIKT--VALTNFDTERLRIILEN--GIPVVSNQVQ--HSVV 145 (303)
Q Consensus 92 ~~~~~~~~~~al~~l~~~--G~ir~--iGvS~~~~~~l~~~~~~--~~~~~~~q~~--~n~l 145 (303)
. ..++..++.+.++++. |+.-- +...-.+.+.+..+... ....+++.+. |..-
T Consensus 97 ~-~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~ 157 (203)
T cd00959 97 S-GDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPG 157 (203)
T ss_pred C-CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC
Confidence 2 2256677777777776 44221 23344456666665543 2235566665 6543
No 46
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=63.64 E-value=1.1e+02 Score=27.52 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhH
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 265 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~ 265 (303)
..|.++|++.+. ++.++-..|+.... ...+..|+| +|+.+-+.+
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAS--TP~~li~eV 275 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGAS--APEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCC--CCHHHHHHH
Confidence 678888988874 68899999997665 456788999 998765544
No 47
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=63.46 E-value=29 Score=29.28 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeeeecc
Q 022088 62 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQV 140 (303)
Q Consensus 62 ~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~q~ 140 (303)
++... .+-+.|-.-|+..+.+=+ ..+ +.++.++.++++-.=-.+|+.+ .+.++++.+++.|..|.+
T Consensus 19 ~~~a~-~~~~al~~gGi~~iEiT~------~t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 19 PEDAV-PIAEALIEGGIRAIEITL------RTP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp GGGHH-HHHHHHHHTT--EEEEET------TST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred HHHHH-HHHHHHHHCCCCEEEEec------CCc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 34443 334455566665544432 122 2334444444433335689886 588999999998766653
Q ss_pred cccccccChhhhHHHHHHHhCCeEEe
Q 022088 141 QHSVVDMRPQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 141 ~~n~l~~~~~~~~~~~~~~~gi~via 166 (303)
.+....+++++|+++|+.++.
T Consensus 86 -----SP~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 -----SPGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp -----ESS--HHHHHHHHHHTSEEEE
T ss_pred -----CCCCCHHHHHHHHHcCCcccC
Confidence 234456899999999998884
No 48
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=63.18 E-value=1.1e+02 Score=27.29 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhH
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 265 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~ 265 (303)
.+|.++|+++|. ++.++-..|+-.... ..+..|+| +|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAS--TP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAS--TPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCC--CCHHHHHHH
Confidence 688899999874 688999999987654 56789999 998875544
No 49
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=63.06 E-value=43 Score=26.55 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=46.4
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
|=.+.|+-|++. -..+..+++.+.++.+... ....|++++...... ..++++...|..+.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 557888888875 2356777788877777663 457899999998776 5588888888877765
No 50
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=62.65 E-value=1.2e+02 Score=27.59 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=53.4
Q ss_pred hhcCCCcccEEEEec-CCCCCCcHHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHHc--CCCeeeecccccccc
Q 022088 74 RRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHSVVD 146 (303)
Q Consensus 74 ~~Lg~d~iDl~~lH~-~~~~~~~~~~~~~al~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~--~~~~~~~q~~~n~l~ 146 (303)
+.+|.|+||+-+.-. |+......++....++...+.=.+-- |.-|.. +++.++++++. +-++-++-+...
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e--- 162 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED--- 162 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---
Confidence 577888888764322 22212212344444444433323322 555532 78889988886 333443333321
Q ss_pred cChhhhHHHHHHHhCCeEEeeccc
Q 022088 147 MRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 147 ~~~~~~~~~~~~~~gi~via~spl 170 (303)
.-+.+.+.|+++|..+++.+|.
T Consensus 163 --n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 --NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --HHHHHHHHHHHhCCeEEEEcHH
Confidence 2347999999999999999865
No 51
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=62.17 E-value=1.1e+02 Score=26.76 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=42.6
Q ss_pred HHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 105 DLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 105 ~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
+..++|+. -...+...++..++.+...+.++.++=.+.++++...-..++..++..|+.++.+-|
T Consensus 5 ~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 5 QALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 33445775 223344455666666666688888888999998654444577777777877777754
No 52
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=61.91 E-value=40 Score=29.18 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 022088 57 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 131 (303)
Q Consensus 57 ~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 131 (303)
.+..+.+....-.+-+.+-+++|+|-+=.+-.++...|+.-+++++-|.|+++|-+-. =.++.++-..+++.+.
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~ 150 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEA 150 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhc
Confidence 3567888888889999999999999999998888888888899999999999987543 2233444444455443
No 53
>PRK05414 urocanate hydratase; Provisional
Probab=61.82 E-value=27 Score=33.70 Aligned_cols=118 Identities=18% Similarity=0.087 Sum_probs=76.7
Q ss_pred cHHHHHHHHHcCCceee--hHhHH--HH-------------HHHhcc-CCCCccceEEEccccCCCC-------------
Q 022088 10 DLPLLTWLIYMGLLKIS--MASSS--IE-------------FVERGH-QSSWIRSEGDLTKWVPPPV------------- 58 (303)
Q Consensus 10 ~~~lv~~Al~~Gi~~~D--tA~~y--~~-------------~~~~~~-~~~~r~~~~I~tK~~~~~~------------- 58 (303)
+-+..+..-+.|+..+- ||++| +| .+.+.. ...-+.++||++=+|.-.+
T Consensus 114 ~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 114 NWEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred CHHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceE
Confidence 34455666677766664 55554 11 122222 1233457899888874210
Q ss_pred ---CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 022088 59 ---KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 135 (303)
Q Consensus 59 ---~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 135 (303)
+.+++ +.-+|+.+.|+|.+ ..+++++++-.++.+++|+...||+-..-.+.+.++++.++.|
T Consensus 194 i~vEvd~~-------ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~p 258 (556)
T PRK05414 194 LAVEVDES-------RIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRP 258 (556)
T ss_pred EEEEECHH-------HHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCC
Confidence 12333 33478888998876 2337899999999999999999999988889999999886544
Q ss_pred e--eecccc
Q 022088 136 V--SNQVQH 142 (303)
Q Consensus 136 ~--~~q~~~ 142 (303)
+ +-|+..
T Consensus 259 DlvtDQTSa 267 (556)
T PRK05414 259 DLVTDQTSA 267 (556)
T ss_pred CccCcCccc
Confidence 4 445543
No 54
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=61.69 E-value=88 Score=28.45 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCC-CCHHHHHHHHH
Q 022088 214 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLS-LDEDDVNSIQE 282 (303)
Q Consensus 214 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~-L~~e~~~~i~~ 282 (303)
+..+++.+.-+.+..|..-.-+-.-|--. .....|.. ++..+...++++... +++++++.|-.
T Consensus 237 ldd~v~hI~h~v~~~G~dhVglGsDf~g~----~~~p~gle--d~~~l~~l~~~L~~~G~~e~~i~~i~~ 300 (313)
T COG2355 237 LDDLVRHIDHFVELVGIDHVGLGSDFDGG----TGPPDGLE--DVGKLPNLTAALIERGYSEEEIEKIAG 300 (313)
T ss_pred HHHHHHHHHHHHHhcCcceeEecccccCC----CCCchhhc--ChhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33444555556666565432222222222 22245788 899999999888664 99999887743
No 55
>PRK13796 GTPase YqeH; Provisional
Probab=61.61 E-value=74 Score=29.53 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=59.6
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 125 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l 125 (303)
-++|.+|.--.+.....+.+.+.++.-.+.+|....|++.+..-. .. .++++++.+.+..+.+.+--+|.+|.+...+
T Consensus 99 viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~-gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 99 VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GH-GIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CC-CHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 688999975322233456677777777778887666777775432 22 3688888888887788899999999998777
Q ss_pred HHHHH
Q 022088 126 RIILE 130 (303)
Q Consensus 126 ~~~~~ 130 (303)
-..+.
T Consensus 177 iN~L~ 181 (365)
T PRK13796 177 INRII 181 (365)
T ss_pred HHHHH
Confidence 66553
No 56
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=61.34 E-value=28 Score=33.52 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=49.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe--eeecccc
Q 022088 72 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV--VSNQVQH 142 (303)
Q Consensus 72 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~--~~~q~~~ 142 (303)
.-+|+.+.|+|.+ ..+++++++-.++.+++|+...||+-..-.+.+.++++.++.| .+-|+..
T Consensus 194 i~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 194 IDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 3467888898876 2337899999999999999999999988889999999875544 4445544
No 57
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=60.81 E-value=83 Score=27.56 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCC----cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNP----GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~-lH~~~~~~~----~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
.+++.+.+..++.+ .-|-|+||+=. --+|..... ..+.....++.+++.-.+ -+.+-+++++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 36677777766654 67899999863 333432111 123455667777665333 378899999999999998632
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
-+|-+ +..+ ...++++.+++.|..++.+..
T Consensus 99 -iINdi--s~~~--~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 -IINDV--SGGR--GDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -EEEeC--CCCC--CChHHHHHHHHcCCCEEEECc
Confidence 22222 2221 114789999999999888754
No 58
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.48 E-value=59 Score=27.62 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=43.5
Q ss_pred hhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeeccccc
Q 022088 74 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 143 (303)
Q Consensus 74 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n 143 (303)
..+|.|++=+.+.+....... .+..+.+.+.. .+.+..+||. |.+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 458999998874332222222 34444444332 3568999988 6788888888876 67899999864
No 59
>PLN02363 phosphoribosylanthranilate isomerase
Probab=60.12 E-value=30 Score=30.47 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeec
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q 139 (303)
+++.++..+ ++|.|||=+.+......... .+..+.+.+......++.+||- |.+++.+.++.+. ..++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 556666555 48999999874432222222 3444455444433347789986 7888889888876 6789999
Q ss_pred cccc
Q 022088 140 VQHS 143 (303)
Q Consensus 140 ~~~n 143 (303)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9864
No 60
>PRK08609 hypothetical protein; Provisional
Probab=58.97 E-value=1.5e+02 Score=29.40 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC------CC--H---HHHHHH-HHcCCCeeee
Q 022088 71 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD--T---ERLRII-LENGIPVVSN 138 (303)
Q Consensus 71 ~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~------~~--~---~~l~~~-~~~~~~~~~~ 138 (303)
..|+. .||+ +.-+|++.. .+ .++..+.+.++.+.|.+.-+|=-. .. . +.+.++ .+.+..+.+|
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEIN 498 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELN 498 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEc
Confidence 34544 5666 677797532 23 467788899999999888777543 11 1 223333 3335444444
Q ss_pred cccccccccChhhhHHHHHHHhCCeEE
Q 022088 139 QVQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 139 q~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
-+.+.......++..|.+.|+.+.
T Consensus 499 ---a~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 499 ---ANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred ---CCccccCccHHHHHHHHHcCCEEE
Confidence 333322334578999999998644
No 61
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=58.29 E-value=1.3e+02 Score=26.42 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCcHH----HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYL----DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~-lH~~~~~~~~~~----~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
.+++.+.+.+++.+ .-|.|+||+=- --+|+...-..+ .+...++.+++.-.+ -+.+-+++++.++++++.|.+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 46677777766664 56899999921 112332211112 255566666665222 378889999999999998644
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+ ++-+ +... .+++++.+++.|..++.+.
T Consensus 98 i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 I-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred E-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 2 2222 2221 3468899999999999854
No 62
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=57.77 E-value=30 Score=29.37 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=57.5
Q ss_pred HhhcCCCcccEEEEe-cCCCCCCc----HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeeccccccccc
Q 022088 73 RRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 147 (303)
Q Consensus 73 L~~Lg~d~iDl~~lH-~~~~~~~~----~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~ 147 (303)
+..-|.|+||+=--- +|...... ++.+...++.+++..-=--+.+-++.++.++++++.+.++.-+...+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFED--- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSS---
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccc---
Confidence 445689999985322 22211111 2344555556664111235677789999999999986665444444332
Q ss_pred ChhhhHHHHHHHhCCeEEeeccc
Q 022088 148 RPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 148 ~~~~~~~~~~~~~gi~via~spl 170 (303)
..++++.++++|..++++.--
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 457999999999999987544
No 63
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=57.01 E-value=66 Score=28.04 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=36.8
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTE 123 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~ 123 (303)
.++|+|=.. +-+.|.++++.-.++- .-|+.++|..... .+..+--++.|..|++.=- --+|+|.|+..
T Consensus 115 PvIlSTG~s------tl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 115 PVILSTGMS------TLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp -EEEE-TT--------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred cEEEECCCC------CHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 566666443 5577777777664444 4589999987432 2322344677888885523 67799988764
No 64
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.77 E-value=45 Score=28.49 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC---ccEEEecC-CCHHHHHHHHHcCCCee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 136 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~---ir~iGvS~-~~~~~l~~~~~~~~~~~ 136 (303)
+++.... +-+.|..-|+..+.+=+ .. ...++.+++++++-. =-.+|+.+ .+.++++.+++.|..|.
T Consensus 23 ~~~~a~~-~~~al~~~Gi~~iEit~------~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALK-ISLAVIKGGIKAIEVTY------TN---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEEC------CC---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4444444 44556667766555543 11 345566667765421 24688886 58899999999877665
Q ss_pred eecccccccccChhhhHHHHHHHhCCeEEe
Q 022088 137 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 137 ~~q~~~n~l~~~~~~~~~~~~~~~gi~via 166 (303)
+ .+....+++++|+++|+.++.
T Consensus 93 v--------sP~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V--------SPSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E--------CCCCCHHHHHHHHHcCCCEEC
Confidence 3 234456899999999998873
No 65
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.88 E-value=1.1e+02 Score=26.60 Aligned_cols=21 Identities=0% Similarity=-0.018 Sum_probs=16.3
Q ss_pred hhHHHHHHHhCCeEEeecccc
Q 022088 151 QKMAELCQLTGVKLITYGTVM 171 (303)
Q Consensus 151 ~~~~~~~~~~gi~via~spl~ 171 (303)
...+++|+..|...+...|..
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCC
Confidence 357789999999998776643
No 66
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=55.78 E-value=1.1e+02 Score=26.22 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred CHHHHHHHHHc-CCCeeeecc--cccccccCh---hhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCC
Q 022088 121 DTERLRIILEN-GIPVVSNQV--QHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLN 194 (303)
Q Consensus 121 ~~~~l~~~~~~-~~~~~~~q~--~~n~l~~~~---~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~ 194 (303)
++.+++.+.+. |+.+.++.. +||.++... .+++.++++.-|-.-+...|+..|--.+...
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~v-------------- 115 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAV-------------- 115 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccc--------------
Confidence 45666666554 655554433 455554322 3579999999999999999997763222111
Q ss_pred CchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCC
Q 022088 195 TPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 231 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 231 (303)
+.+.+...+++|+.+-.++|++
T Consensus 116 ---------------r~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 116 ---------------RREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ---------------chHHHHHHHHHhhHHHHHhCcc
Confidence 1134556678888888888764
No 67
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=55.00 E-value=1.9e+02 Score=27.19 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=63.2
Q ss_pred HHHHHHHHHHH-----------hhcCCCcccEEEEecCCCCCC----cHHHHHHHHHHHHHc-CCccEEEec---CCCHH
Q 022088 63 SIVRESIDVSR-----------RRMDVPCLDMLQFHWWDYSNP----GYLDALNHLTDLKEE-GKIKTVALT---NFDTE 123 (303)
Q Consensus 63 ~~i~~sve~SL-----------~~Lg~d~iDl~~lH~~~~~~~----~~~~~~~al~~l~~~-G~ir~iGvS---~~~~~ 123 (303)
+.++..++... +.+| .|++.||....+.. .-++..+..++..+. +.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 45666666655 4454 58888887533211 123555666665333 333333323 45889
Q ss_pred HHHHHHHc--CCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccccccc
Q 022088 124 RLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 124 ~l~~~~~~--~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
.++++++. +-++-++-..... .-..+.+.|+++|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 99998886 4345444333321 22478999999999999999876553
No 68
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=53.56 E-value=96 Score=27.36 Aligned_cols=95 Identities=9% Similarity=-0.129 Sum_probs=62.0
Q ss_pred HHHHHHHH--cCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecC
Q 022088 12 PLLTWLIY--MGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 89 (303)
Q Consensus 12 ~lv~~Al~--~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~ 89 (303)
.+++.|.+ .|+.-+-+.|.|+..+........-.++-|+|=++.+.+..+.+.-...++..++. |.|-||+++==..
T Consensus 30 ~lc~eA~~~~~~faaVcV~P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~-GAdEiD~Vinig~ 108 (257)
T PRK05283 30 ALCHQAKTPVGNTAAICIYPRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAY-GADEVDVVFPYRA 108 (257)
T ss_pred HHHHHHHhcCCCeeEEEECHHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc-CCCEEeeeccHHH
Confidence 56788888 58888888899977654332100000377888888877777888888888888885 9999999842221
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 022088 90 DYSNPGYLDALNHLTDLKE 108 (303)
Q Consensus 90 ~~~~~~~~~~~~al~~l~~ 108 (303)
.....++.+.+.+.++++
T Consensus 109 -lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 109 -LMAGNEQVGFELVKACKE 126 (257)
T ss_pred -HhCCcHHHHHHHHHHHHH
Confidence 122235555555555554
No 69
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=53.52 E-value=1.3e+02 Score=25.22 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhh
Q 022088 230 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 268 (303)
Q Consensus 230 ~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~ 268 (303)
.|=.++||+|++.++.-..++.|+.-.+.+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 456788999999887666778898877889999998866
No 70
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.24 E-value=1.6e+02 Score=25.85 Aligned_cols=125 Identities=14% Similarity=0.078 Sum_probs=68.8
Q ss_pred cCCceeeh---------HhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCC
Q 022088 20 MGLLKISM---------ASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 90 (303)
Q Consensus 20 ~Gi~~~Dt---------A~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~ 90 (303)
.||-.||. |..|+.+....+. . =+||.||-. ..+.+.+--++-|.-|+.-=+|-.--
T Consensus 36 ngihIIDL~kT~~~l~~A~~~v~~~~~~~g-~---ILfVgTK~~----------a~~~V~~~A~r~g~~yV~~RwLgG~L 101 (252)
T COG0052 36 NGIHIIDLQKTLERLREAYKFLRRIAANGG-K---ILFVGTKKQ----------AQEPVKEFAERTGAYYVNGRWLGGML 101 (252)
T ss_pred CCcEEEEHHHHHHHHHHHHHHHHHHHcCCC-E---EEEEechHH----------HHHHHHHHHHHhCCceecCcccCccc
Confidence 67777775 4444555544332 1 379998843 45677777788888766543333221
Q ss_pred CCCCcHHH---HHHHHHHHHHcCCccEEEecCCCHHH-------HHHHHHc--CCC-----eeeecccccccccChhhhH
Q 022088 91 YSNPGYLD---ALNHLTDLKEEGKIKTVALTNFDTER-------LRIILEN--GIP-----VVSNQVQHSVVDMRPQQKM 153 (303)
Q Consensus 91 ~~~~~~~~---~~~al~~l~~~G~ir~iGvS~~~~~~-------l~~~~~~--~~~-----~~~~q~~~n~l~~~~~~~~ 153 (303)
.....+.. -+..||.+.+.| + +..+..+ .+.+... |++ |+++- +.|+..+...
T Consensus 102 TN~~ti~~si~rl~~lE~~~~~~---~---~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~----ViDp~~e~iA 171 (252)
T COG0052 102 TNFKTIRKSIKRLKELEKMEEDG---F---DGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF----VIDPRKEKIA 171 (252)
T ss_pred cCchhHHHHHHHHHHHHHHhhcc---c---ccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE----EeCCcHhHHH
Confidence 11111223 233445555666 2 2222222 2222222 343 55432 3567778889
Q ss_pred HHHHHHhCCeEEeec
Q 022088 154 AELCQLTGVKLITYG 168 (303)
Q Consensus 154 ~~~~~~~gi~via~s 168 (303)
+..|++.||+|+|..
T Consensus 172 v~EA~klgIPVvAlv 186 (252)
T COG0052 172 VKEANKLGIPVVALV 186 (252)
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999999864
No 71
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=52.32 E-value=1.8e+02 Score=26.35 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=55.3
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---------CCHHHHHHHHHcCCCeeeeccccccccc--Ch
Q 022088 81 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENGIPVVSNQVQHSVVDM--RP 149 (303)
Q Consensus 81 iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~~~~~~~~q~~~n~l~~--~~ 149 (303)
|.-+.|-.-|+.........+-++.+++.|-++.+.+.+ .+.+.++.+.+.+.. ..+.++.|-... ..
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 344556555555432356677788888888776555543 344555555555533 334444431110 11
Q ss_pred hhhHHHHHHHhCCeEEeeccccccc
Q 022088 150 QQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 150 ~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
..+.++.+++.|+.+...+++..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 2357788889999999999998874
No 72
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=52.20 E-value=1e+02 Score=26.97 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCC-----CCCcHHHHHHHHHHHHHc-CCccEEEec---CCCHHHHHHHHH
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 130 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~al~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 130 (303)
++.+.. ..+-+.|.++|+++|++-+...... ..+ ....++.++.+++. +.++...++ ......++.+.+
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 344544 4555569999999999986532110 011 11234455555433 346666654 334677777776
Q ss_pred cCCCeeeecccccccccChhhhHHHHHHHhCCeEEee
Q 022088 131 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 131 ~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~ 167 (303)
.++ +.+.+.++.-+-..-.+.+++++++|+.+...
T Consensus 97 ~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 544 33443333322122356889999999876543
No 73
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=51.96 E-value=2.7e+02 Score=28.13 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHh
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 264 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en 264 (303)
..|.++|++.|. ++.++--.|+-.... ..+..|++ +|+.+-+.
T Consensus 222 ~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaS--tP~~~i~~ 270 (647)
T PRK00087 222 TKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGAS--TPDWIIEE 270 (647)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccC--CCHHHHHH
Confidence 678889988874 688999899887654 56788999 99865444
No 74
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=51.59 E-value=85 Score=28.30 Aligned_cols=140 Identities=19% Similarity=0.262 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCC---CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH--HHHcCCCee
Q 022088 62 SSIVRESIDVSRRRMDVPCLDMLQFHWWDY---SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI--ILENGIPVV 136 (303)
Q Consensus 62 ~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~---~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~--~~~~~~~~~ 136 (303)
.+.+++.+.+-+++.|+|.+=++..-.-.. ..+...+.+++|++..+++.-. + ++..+-. ++..+.++.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHHCCCCeE
Confidence 367889999999999998544443333221 1112345788888888876533 1 2222222 223343222
Q ss_pred eecccccccccChhhhHHHHHHHhCCeEEee---ccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchh
Q 022088 137 SNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 213 (303)
Q Consensus 137 ~~q~~~n~l~~~~~~~~~~~~~~~gi~via~---spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (303)
|=++-+. .....+.+.++++|+.+..- +|++.| .
T Consensus 205 -N~tP~~~---a~~P~l~ela~~~gvpi~GdD~KT~lAAp---------------------------------------l 241 (295)
T PF07994_consen 205 -NGTPSNI---ADDPALVELAEEKGVPIAGDDGKTPLAAP---------------------------------------L 241 (295)
T ss_dssp -E-SSSTT---TTSHHHHHHHHHHTEEEEESSBS-HHHHH---------------------------------------H
T ss_pred -eccCccc---cCCHHHHHHHHHcCCCeecchHhhhhhhH---------------------------------------H
Confidence 2222222 22347899999999887652 223332 2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccC
Q 022088 214 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVR 254 (303)
Q Consensus 214 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~ 254 (303)
+-+ +-++.++|.+.|..-.+-.++|.+..|.+. +|..
T Consensus 242 vlD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~ 278 (295)
T PF07994_consen 242 VLD-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPP 278 (295)
T ss_dssp HHH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTST
T ss_pred HHH-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCC
Confidence 223 357888999999988999999999999643 4555
No 75
>PRK13753 dihydropteroate synthase; Provisional
Probab=51.42 E-value=1.8e+02 Score=25.99 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEE-ecCCCCCC----cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNP----GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~l-H~~~~~~~----~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
++++...+..++-+ .-|.|.||+=-- .+|....- .+..+...++.+++.+. -|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 36677777777654 567888887543 33433211 13344577788887753 488999999999999998755
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
+. | ..+-+ ....+.+.+.+.+++++.+--.
T Consensus 99 iI-N--DVsg~---~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YL-N--DIQGF---PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EE-E--eCCCC---CchHHHHHHHHcCCCEEEEecC
Confidence 32 1 11222 1346788899999998876543
No 76
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=51.32 E-value=30 Score=32.84 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=47.7
Q ss_pred hhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeee
Q 022088 74 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 138 (303)
Q Consensus 74 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 138 (303)
+||.+.|+|.. ....+++++-.++..++|+-..||+-..-.+.+.++++.++.|+++
T Consensus 205 ~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 205 KRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 68889998864 2337899999999999999999999988889999999886666554
No 77
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=50.89 E-value=59 Score=28.46 Aligned_cols=103 Identities=9% Similarity=0.017 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+...+-+ +.|+.++ +.++..|-+. +-++.+.++++.-.+. ..|=+.++.+.+.++++. ..+++
T Consensus 139 ~~~~~~a~~~~-~~l~~~~-----i~~iEeP~~~-----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-~~~d~ 206 (265)
T cd03315 139 GWTPKQAIRAL-RALEDLG-----LDYVEQPLPA-----DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-GAADA 206 (265)
T ss_pred CcCHHHHHHHH-HHHHhcC-----CCEEECCCCc-----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-CCCCE
Confidence 34555444333 2334443 4456665332 2245667777775555 455566788888888876 34778
Q ss_pred eccccccccc-ChhhhHHHHHHHhCCeEEeecccccc
Q 022088 138 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 138 ~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
+|+..+..-- ..-.++...|+++|+.++..+.+.+|
T Consensus 207 v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 207 VNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred EEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 8887665421 12357899999999999987666554
No 78
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=50.58 E-value=1.2e+02 Score=25.45 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH--H
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--E 123 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~--~ 123 (303)
...+.-.+.+. ....+.....+...++..+.+.-.+++--...........+...+..+++.|- .+++.+++. .
T Consensus 83 ~~~l~ini~~~--~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~ 158 (240)
T cd01948 83 DLRLSVNLSAR--QLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYS 158 (240)
T ss_pred CeEEEEECCHH--HhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHh
Confidence 34444455433 22235567788888888887653333332222222224568889999999998 466666543 3
Q ss_pred HHHHHHHcCCCeeeecccccccccC--------hhhhHHHHHHHhCCeEEeec
Q 022088 124 RLRIILENGIPVVSNQVQHSVVDMR--------PQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 124 ~l~~~~~~~~~~~~~q~~~n~l~~~--------~~~~~~~~~~~~gi~via~s 168 (303)
.+..+.. .+|+++-+..+.+... .-..++..|+..|+.+++-.
T Consensus 159 ~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 159 SLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred hHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 3333333 4566666665554321 12468888999999888643
No 79
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=50.35 E-value=23 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhh
Q 022088 219 QTLKRIASKHGVSIPVVAVRYILD 242 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~~l~ 242 (303)
.-+.+||+++|+++.++|..|+.-
T Consensus 14 ~~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 14 LSFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHH
Confidence 346789999999999999999753
No 80
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=50.10 E-value=1.2e+02 Score=25.71 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=58.3
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHH
Q 022088 81 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 158 (303)
Q Consensus 81 iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~ 158 (303)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|.++.+.+..++.. ..++++|+..+.+-- ..-.++..+|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-~~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALEL-GAVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 4666677664332 245677788777665 445666788888777775 347778877665421 11347889999
Q ss_pred HhCCeEEeecccccc
Q 022088 159 LTGVKLITYGTVMGG 173 (303)
Q Consensus 159 ~~gi~via~spl~~G 173 (303)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999988776554
No 81
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=49.39 E-value=1.5e+02 Score=25.18 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cCCCe
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 135 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~----~~~~~ 135 (303)
++.+ .+..+-+.|.++|+++|++- .|..... ..+.++.+.+.... .+-.+++......++.+.+ .+.+.
T Consensus 11 ~~~~-~k~~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTE-EKLEIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HH-HHHHHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHH-HHHHHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 3444 44555567999999999888 3222212 23445555555555 5555666677777777555 34444
Q ss_pred eeeccccccccc------------ChhhhHHHHHHHhCCeE
Q 022088 136 VSNQVQHSVVDM------------RPQQKMAELCQLTGVKL 164 (303)
Q Consensus 136 ~~~q~~~n~l~~------------~~~~~~~~~~~~~gi~v 164 (303)
..+-...|.... ..-.+.+.++++.|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 434444443111 11246889999999988
No 82
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.20 E-value=1.8e+02 Score=25.36 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+.. ..+-+.|.++|+++|++-+ |. .. +.-++.++.+.+.+ .++..+.+....+.++.+.+.+.+...
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~--~~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---PA--MG--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---CC--CC--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 3455544 4555569999999999852 22 11 23345666666643 477777877888888888876544322
Q ss_pred eccccccc------ccCh------hhhHHHHHHHhCCeEE
Q 022088 138 NQVQHSVV------DMRP------QQKMAELCQLTGVKLI 165 (303)
Q Consensus 138 ~q~~~n~l------~~~~------~~~~~~~~~~~gi~vi 165 (303)
+-+..|.. ++.. -.+.+++|++.|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22222211 1111 1357889999998654
No 83
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=48.46 E-value=1.5e+02 Score=27.42 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 125 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l 125 (303)
-++|.+|.---+...+.+.+.+.+.+-++..|....|++.+-. ..... ++++++.+.++.+.+.+--+|.+|.+...+
T Consensus 93 iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 93 VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNG-IDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCC-HHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 6889999753222445667777777778888865456665543 23333 788888888887777899999999998776
Q ss_pred HHHHH
Q 022088 126 RIILE 130 (303)
Q Consensus 126 ~~~~~ 130 (303)
-..+.
T Consensus 171 iN~l~ 175 (360)
T TIGR03597 171 INKLL 175 (360)
T ss_pred HHHHH
Confidence 65543
No 84
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=48.38 E-value=82 Score=29.09 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecc
Q 022088 99 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 99 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~sp 169 (303)
-++.+.+|++...+. ..|=|.++...++.++.. .-++++|+.....-- ..-.++.+.|+++|+.++.++.
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-RLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 366788888887665 778888899999999886 347888887665321 1235789999999999987644
No 85
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=48.38 E-value=1.1e+02 Score=23.40 Aligned_cols=65 Identities=12% Similarity=-0.027 Sum_probs=43.9
Q ss_pred CccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 43 WIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 43 ~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~--d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
.|=.+.|+-|++.. -..+..+++-+.++.+.... +..|++++..+.....++.++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34467777776543 23556777777777765442 3579999999876666677777777777654
No 86
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=47.89 E-value=1.1e+02 Score=23.52 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=46.4
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
|=.+.|+-|++.. -..+..+++.+.+..+.+.. ...|++++-.+.....++.++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3356777776643 23567788888887776642 3679999999887777788888888888765
No 87
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=47.60 E-value=2.5e+02 Score=26.59 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 138 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 138 (303)
+++++.+.+.+++..+ |-+|.+-+|.. -..+.++.+++.|+ ..|+-+-...-+...+...
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcG--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n------ 198 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCG--------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN------ 198 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc--------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc------
Confidence 6788999988888876 56788999973 23467889998885 5566666665555554431
Q ss_pred cccccccccChhhhHHHHHHHhCCeEEeeccccccccCC
Q 022088 139 QVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSE 177 (303)
Q Consensus 139 q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L~~ 177 (303)
-.=|||-... .++++.|+++++.+- |+-|+-.|
T Consensus 199 -~~ENPlye~f-D~lLeI~~~yDVtlS----LGDglRPG 231 (431)
T PRK13352 199 -NKENPLYEHF-DYLLEILKEYDVTLS----LGDGLRPG 231 (431)
T ss_pred -CCcCchHHHH-HHHHHHHHHhCeeee----ccCCcCCC
Confidence 1123443333 479999999998875 55555333
No 88
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=47.51 E-value=1.9e+02 Score=25.04 Aligned_cols=109 Identities=6% Similarity=-0.114 Sum_probs=59.5
Q ss_pred HhcHHHHHHHHHcCCceeehHhHHHHHHHhccCCCC-c--cceEEEccccC-----------CCCCCCHHHHHHHHHHHH
Q 022088 8 MLDLPLLTWLIYMGLLKISMASSSIEFVERGHQSSW-I--RSEGDLTKWVP-----------PPVKMTSSIVRESIDVSR 73 (303)
Q Consensus 8 ~~~~~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~-r--~~~~I~tK~~~-----------~~~~~~~~~i~~sve~SL 73 (303)
+.+.+.|+.|+++|+++|- ..|+.++......-. . =.+...-.+-. .-+..++..+-+.+++--
T Consensus 36 ~~~~~~I~~~~~aG~r~fG--ENrvQe~~~K~~~l~~~~~i~WHfIG~LQsNK~k~v~~~~~~ihSlDr~klA~~l~kra 113 (228)
T COG0325 36 TVPAEDIREAYEAGQRHFG--ENRVQEALDKIEALKDLPDIEWHFIGPLQSNKVKLVAENFDWIHSLDRLKLAKELNKRA 113 (228)
T ss_pred CCCHHHHHHHHHcCChhhc--chHHHHHHHHHHhcCcCCCeEEEEechhhhhHHHHHHhhcceeeecCHHHHHHHHHHHH
Confidence 5688999999999999985 455554432221000 0 02222222111 124557788888888855
Q ss_pred hhcCCCcccEEEEecCCC----CCCcHHHHHHHHHHHHHcCCccEEEecC
Q 022088 74 RRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIKTVALTN 119 (303)
Q Consensus 74 ~~Lg~d~iDl~~lH~~~~----~~~~~~~~~~al~~l~~~G~ir~iGvS~ 119 (303)
..++ .-+++|+==+... .....+++...+..+.+--.++-.|+=+
T Consensus 114 ~~~~-~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ 162 (228)
T COG0325 114 LELP-KPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMT 162 (228)
T ss_pred HhCC-CCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEe
Confidence 5555 3566654322211 1111356666666666667777777543
No 89
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.28 E-value=1.7e+02 Score=28.07 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=45.1
Q ss_pred hcHHHHHHHHHcCCceeehH-----hHHHHH---------------HHhccCCCCccceEEEccccCCCCCCCHHHHHHH
Q 022088 9 LDLPLLTWLIYMGLLKISMA-----SSSIEF---------------VERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRES 68 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~DtA-----~~y~~~---------------~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~s 68 (303)
+|.+.++...++|+|.+-.. +..+.. .+++.. ...+.+--=+|.+ ..+.+.+++.
T Consensus 161 ~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g---~~~v~~DlI~GlP--gqT~e~~~~~ 235 (449)
T PRK09058 161 FDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARD---RAAVVCDLIFGLP--GQTPEIWQQD 235 (449)
T ss_pred CCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCC---CCcEEEEEEeeCC--CCCHHHHHHH
Confidence 57889999999999988542 111111 111111 0123322223333 5588989998
Q ss_pred HHHHHhhcCCCcccEEEEec
Q 022088 69 IDVSRRRMDVPCLDMLQFHW 88 (303)
Q Consensus 69 ve~SL~~Lg~d~iDl~~lH~ 88 (303)
++..++ |+.++|++|.+.-
T Consensus 236 l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 236 LAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred HHHHHh-cCCCEEEEecccc
Confidence 887664 9999999998763
No 90
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=47.16 E-value=1.4e+02 Score=28.73 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=55.1
Q ss_pred cCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHH
Q 022088 20 MGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 99 (303)
Q Consensus 20 ~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~ 99 (303)
.|+-|+-.|...+-.|+-.+...- ++++=---.- ...+.+...+.+.++|+.||+++ |-++ .....++..
T Consensus 12 TG~lHiG~artAL~n~l~Ar~~gG--~fiLRIEDTD--~~Rs~~~~~~~I~e~L~wLGI~~-De~y-----~QSer~~~y 81 (445)
T PRK12558 12 TGYLHVGNARTALLNWLYARKHGG--KFILRIDDTD--LERSKQEYADAIAEDLKWLGINW-DRTF-----RQSDRFDRY 81 (445)
T ss_pred CCcccHHHHHHHHHHHHHHHHhCC--EEEEEeccCC--cccchHHHHHHHHHHHHHcCCCC-Cccc-----cHHHHHHHH
Confidence 366666666666655543331100 2222111111 12355889999999999999974 7431 111213445
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 022088 100 LNHLTDLKEEGKIKTVALTNFDTERLRIIL 129 (303)
Q Consensus 100 ~~al~~l~~~G~ir~iGvS~~~~~~l~~~~ 129 (303)
-+.+++|+++|++ |...| +.+++++..
T Consensus 82 ~~~~e~L~e~G~A-Y~C~C--t~eel~~~r 108 (445)
T PRK12558 82 DEAAEKLKAAGRL-YPCYE--TPEELELKR 108 (445)
T ss_pred HHHHHHHHHCCCE-EEecC--chHHHHHHH
Confidence 6788999999995 55554 555655433
No 91
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=47.07 E-value=1.9e+02 Score=26.50 Aligned_cols=102 Identities=13% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEe---------cCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---CCHHHHH
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFH---------WWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLR 126 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH---------~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~---~~~~~l~ 126 (303)
.++.+.+..- -+.|.+.|+++|.+-+.- .+. ..+ -.+.++++.+. ....+...+.. .+.+.++
T Consensus 21 ~f~~~~~~~i-~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~-~~e~i~~~~~~--~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 21 QYTLEQVRAI-ARALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHT-DEEYIEAAAEV--VKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred ccCHHHHHHH-HHHHHHcCCCEEEeecCCCCCCccccCCCC-CCC-HHHHHHHHHHh--CCCCEEEEEeccCcccHHHHH
Confidence 5566655554 455999999999996321 111 112 13333443322 23355544332 3567788
Q ss_pred HHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEee
Q 022088 127 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 127 ~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~ 167 (303)
.+.+.++. .+.+.++.-+...-.+.+++++++|..+...
T Consensus 96 ~a~~~gvd--~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 96 MAYDAGVR--VVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHcCCC--EEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 87776543 3333333322223457899999999877654
No 92
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=46.79 E-value=1.1e+02 Score=23.85 Aligned_cols=62 Identities=15% Similarity=0.017 Sum_probs=46.1
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCC----CcccEEEEecCCCCCCcHHHHHHHHHHHHH
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 108 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~----d~iDl~~lH~~~~~~~~~~~~~~al~~l~~ 108 (303)
|=.+.|+-|++. -..+..++.-+.++.+.+.. ...|++++..+.....++.++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 446778888775 23567788888888877653 568999999987766667788888877665
No 93
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.58 E-value=2.1e+02 Score=25.24 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+...+ +-+.|.++|++.|.+-. |... ++..++.+.+.+.++ .+-.+....+.+.++.+.+.+.+...
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 345555444 44559999998888873 4322 334455555554444 44456667788899999887654322
Q ss_pred ecccccc------cccCh------hhhHHHHHHHhCCeEEeec
Q 022088 138 NQVQHSV------VDMRP------QQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 138 ~q~~~n~------l~~~~------~~~~~~~~~~~gi~via~s 168 (303)
+-+..|. +.+.. -.+.+++++++|+.+....
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2222221 11121 2356788899997755443
No 94
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=46.29 E-value=53 Score=31.81 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=68.3
Q ss_pred hcHHHHHHHHHcCCceee--hHhHH--HH-------------HHHhc-cCCCCccceEEEccccCCC-------------
Q 022088 9 LDLPLLTWLIYMGLLKIS--MASSS--IE-------------FVERG-HQSSWIRSEGDLTKWVPPP------------- 57 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~D--tA~~y--~~-------------~~~~~-~~~~~r~~~~I~tK~~~~~------------- 57 (303)
-+-+..+..-+.|+..+- ||++| +| ++.+. -...-+.++||++=++.-.
T Consensus 103 a~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v 182 (546)
T PF01175_consen 103 ATWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGV 182 (546)
T ss_dssp GSHHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-E
T ss_pred CCHHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCce
Confidence 345666777788887775 66554 22 11111 1233345799999887421
Q ss_pred ---CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 58 ---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 58 ---~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
.+.+++.+ -+|+.+-|+|.+. .+++++++-.++.+++|+...||+-..-.+.+.++++.++.
T Consensus 183 ~l~vEvd~~ri-------~kR~~~g~ld~~~--------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~ 247 (546)
T PF01175_consen 183 GLIVEVDPSRI-------EKRLEQGYLDEVT--------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGII 247 (546)
T ss_dssp EEEEES-HHHH-------HHHHHTTSSSEEE--------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT--
T ss_pred EEEEEECHHHH-------HHHHhCCCeeEEc--------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCC
Confidence 12344444 4667788999872 23799999999999999999999998888999999887554
Q ss_pred --eeeecccc
Q 022088 135 --VVSNQVQH 142 (303)
Q Consensus 135 --~~~~q~~~ 142 (303)
+.+-|+..
T Consensus 248 pDl~tDQTS~ 257 (546)
T PF01175_consen 248 PDLVTDQTSA 257 (546)
T ss_dssp -SEE---SST
T ss_pred CCcccCCCcc
Confidence 44456554
No 95
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=46.22 E-value=2.1e+02 Score=25.22 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeeee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 138 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~~ 138 (303)
+.+.+.+..++.. .-|-|+||+=.= ...... .+.....++.+++.-.+ -+-+-+++++.++++++. |.+ -+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~-iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPP-LIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCC-EEE
Confidence 5566666655543 678999998642 111111 34455566666654232 478889999999999987 533 222
Q ss_pred cccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 139 QVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 139 q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
-+. ..+ ...+++++.+++.|+.++...-
T Consensus 97 sIs--~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SVS--AEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eCC--CCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 222 111 1134689999999999997653
No 96
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=45.98 E-value=83 Score=28.82 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=54.8
Q ss_pred cEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHH
Q 022088 82 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 159 (303)
Q Consensus 82 Dl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~ 159 (303)
++.+++.|-+. +.++.+.+|++.-.+. ..|=|.++++.+.++++.+ .++++|+.....-- ....++...|++
T Consensus 216 ~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~i~~~a~~ 289 (357)
T cd03316 216 DLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVGGITEAKKIAALAEA 289 (357)
T ss_pred CCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHH
Confidence 44556665332 2356677788775555 4455667899999998863 47888877655421 123578999999
Q ss_pred hCCeEEeecc
Q 022088 160 TGVKLITYGT 169 (303)
Q Consensus 160 ~gi~via~sp 169 (303)
+|+.++..+.
T Consensus 290 ~g~~~~~~~~ 299 (357)
T cd03316 290 HGVRVAPHGA 299 (357)
T ss_pred cCCeEeccCC
Confidence 9999887653
No 97
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.70 E-value=2.6e+02 Score=26.15 Aligned_cols=89 Identities=16% Similarity=0.053 Sum_probs=60.8
Q ss_pred EEEecCCCCC----------CcHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHHc--CC------Ceeeec
Q 022088 84 LQFHWWDYSN----------PGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GI------PVVSNQ 139 (303)
Q Consensus 84 ~~lH~~~~~~----------~~~~~~~~al~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~--~~------~~~~~q 139 (303)
+-||.|+... -.++++++++.+..++ |+ +-|+=+. |.++++.+++.+. +. +.-++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 6789885321 1278899999888654 32 2222222 6778887777765 55 689999
Q ss_pred ccccccccCh--------hhhHHHHHHHhCCeEEeeccccc
Q 022088 140 VQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 140 ~~~n~l~~~~--------~~~~~~~~~~~gi~via~spl~~ 172 (303)
++||+..... -....+..+++||.+..+...+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999975321 13567778899999999887765
No 98
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=45.66 E-value=2.2e+02 Score=25.43 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhH
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 265 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~ 265 (303)
.+|.++|++.+. ++.++-..|+.... ...+..|+| +|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGAS--TP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGAS--TPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCC--CCHHHHHHH
Confidence 678888988874 67888889998765 456788999 998776554
No 99
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=45.56 E-value=2.3e+02 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHh
Q 022088 219 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNA 266 (303)
Q Consensus 219 ~~l~~ia~~~g~------s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~ 266 (303)
.+|.++|++.|. ++.++=..|+-... ...+-.|+| +|+.|-+++-
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAS--tPd~lV~~Vi 278 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAS--TPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCC--CCHHHHHHHH
Confidence 789999999987 57888899998854 456678999 9998777653
No 100
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=45.09 E-value=1.1e+02 Score=23.50 Aligned_cols=64 Identities=2% Similarity=-0.272 Sum_probs=46.3
Q ss_pred CccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC---cccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 43 WIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 43 ~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d---~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
.|=.+.|+-|+|.. ..+..++.-+.++.+.+..+ -.|++++-.+.....++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A---V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA---VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch---hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 35578888888763 24567777777777776653 479999998877666678888888777654
No 101
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=44.93 E-value=2.8e+02 Score=26.25 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 138 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 138 (303)
+++++.+.+.+++..+ |-+|.+-+|.. -..+.++.+++.|+ ..|+-+-...-+...+...
T Consensus 136 ~mt~d~~~~~ie~qa~----dGVDfmTiH~G--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------ 195 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK----DGVDFMTIHAG--------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------ 195 (423)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc--------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------
Confidence 6788999888888876 56788999963 23467889999885 5566666665555554431
Q ss_pred cccccccccChhhhHHHHHHHhCCeEEeeccccccccC
Q 022088 139 QVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLS 176 (303)
Q Consensus 139 q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 176 (303)
-.=|||-... .++++.|+++++.+- |+-|+-.
T Consensus 196 -~~ENPlye~f-D~lLeI~~~yDVtlS----LGDglRP 227 (423)
T TIGR00190 196 -HKENPLYKNF-DYILEIAKEYDVTLS----LGDGLRP 227 (423)
T ss_pred -CCcCchHHHH-HHHHHHHHHhCeeee----ccCCcCC
Confidence 1123443333 369999999998875 5555533
No 102
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=44.82 E-value=96 Score=22.59 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=39.0
Q ss_pred HHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC
Q 022088 15 TWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 15 ~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
..-.+.|+|..|+++.-..+++.-. +..-+++. ..+...+++.++.-.++||+|
T Consensus 22 ~vLAe~~vNIldisQtvm~~~ftm~---------~lV~~~~~--~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 22 RVLAEHGVNILDISQTVMDGFFTMI---------MLVDISKE--VVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred HHHHHcCCcEEEHHHHHHhhhceee---------eEEcCChH--hccHHHHHHHHHHHHHhcCcE
Confidence 3445899999999999888766432 22222222 447789999999999999985
No 103
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=44.56 E-value=1.3e+02 Score=22.98 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=45.7
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC------cccEEEEecCCCCCCcHHHHHHHHHHHH
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP------CLDMLQFHWWDYSNPGYLDALNHLTDLK 107 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d------~iDl~~lH~~~~~~~~~~~~~~al~~l~ 107 (303)
|=.+.|+.|++.. -..+..+++.+.++.+....+ ..|++++-.+.....++.++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 4478888896643 235678888888888887542 5799999998776666777777777664
No 104
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.34 E-value=2.1e+02 Score=24.64 Aligned_cols=90 Identities=8% Similarity=0.070 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHH-HHHHcCCccEEEecC-CCHHHHHHHHHcCCCeeee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT-DLKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 138 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~-~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~ 138 (303)
+++.... +-+.|-+-|+..+.+=+ ..+...+.++.|. +..++.-=-.+|+.+ .++++++.+++.|..|.+
T Consensus 25 ~~~~a~~-~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV- 96 (222)
T PRK07114 25 DVEVAKK-VIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV- 96 (222)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 4444444 34466677776665543 2222344444443 222332224689886 588999999998766543
Q ss_pred cccccccccChhhhHHHHHHHhCCeEE
Q 022088 139 QVQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 139 q~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
.+....+++++|+++|+.++
T Consensus 97 -------sP~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 97 -------TPLFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred -------CCCCCHHHHHHHHHcCCCEe
Confidence 23445689999999998877
No 105
>PRK06424 transcription factor; Provisional
Probab=43.54 E-value=1.4e+02 Score=23.77 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCC
Q 022088 214 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 273 (303)
Q Consensus 214 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~ 273 (303)
.....+.++.+.++.|+|..++|-+--.+...|.-+.-|-+..+.+.+....++++..|+
T Consensus 82 ~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 82 VEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 344557888888899999998887655544433333333332233444444444444443
No 106
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=42.09 E-value=33 Score=21.67 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhh
Q 022088 219 QTLKRIASKHGVSIPVVAVRYILD 242 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~~l~ 242 (303)
+.++.+.++.|+|..++|-+--++
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs 28 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVG 28 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC
Confidence 556666777788877777554333
No 107
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.78 E-value=1.9e+02 Score=24.09 Aligned_cols=143 Identities=8% Similarity=-0.085 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCceeehHhHHHHHHHhccC-CCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC----cccEEE
Q 022088 11 LPLLTWLIYMGLLKISMASSSIEFVERGHQ-SSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP----CLDMLQ 85 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~-~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d----~iDl~~ 85 (303)
.+++..|++.|+...|..-..+...+..-. ...+.+++++-- .+..+.++..+..-...+..+ .---+.
T Consensus 15 ~~~v~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv 88 (197)
T TIGR02370 15 VEGAQKALDAGIDPIELIEKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGIKVLTPEMEKAVETEVLGKVV 88 (197)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Confidence 468899999999988876555443322211 001113333111 113345555555544544421 111233
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCC
Q 022088 86 FHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGV 162 (303)
Q Consensus 86 lH~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~-~~~~~~~~~~~gi 162 (303)
+-.+..+.-+ -+..-.-.-++..|. |.++|... +.+.+.+.+.. .+|+++.+.+++-.... -.++++.+++.|.
T Consensus 89 ~~t~~gd~H~-lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 89 CGVAEGDVHD-IGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-EKPLMLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EEeCCCchhH-HHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-cCCCEEEEccccccCHHHHHHHHHHHHHcCC
Confidence 4333222221 123333345566775 77788654 44555555544 45666666665443222 3568888888854
No 108
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=41.53 E-value=1.5e+02 Score=22.36 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=46.2
Q ss_pred CccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 43 WIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 43 ~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
.|=.+.|+-|++.. ..+..+++.+.+..+.... ...|++++-.+.....++.++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgkA---V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA---VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch---hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34477888888752 3567777777777776543 3579999998877766678888888877765
No 109
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=40.99 E-value=2.5e+02 Score=24.64 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCc----HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~-lH~~~~~~~~----~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
++.+.+.+..++.+ +-|-|+||+=. -.+|...... ++.+...++.+++.-.+. +.+-+++++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46666666666554 56899999853 2334333211 223444556666653443 78889999999999998633
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+ +|- .+..+.. .++++.++++|..++.+.
T Consensus 99 i-INd--isg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I-IND--VSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E-EEe--CCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 222 2222111 478999999999999854
No 110
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.33 E-value=1.3e+02 Score=26.45 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhc------CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 022088 55 PPPVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 112 (303)
Q Consensus 55 ~~~~~~~~~~i~~sve~SL~~L------g~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~i 112 (303)
+..+.++.+...+-.+-+.+-+ ++++|=+=.+..+....|+..+++++-+.|.++|-+
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4445667777777776666666 688888887777777778788999999999999864
No 111
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.09 E-value=3.1e+02 Score=25.41 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+.. ..+-+.|.++|+++|++- +|.. . +.-++.++.+.+.+. .+..+++....+.++.+.+.+.+...
T Consensus 19 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEK-LAIARALDEAGVDELEVG---IPAM--G--EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CCCC--C--HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 3455544 445556999999999884 3321 1 233566677766643 77777787888999888876544322
Q ss_pred eccccccc------ccChh------hhHHHHHHHhCCeEE
Q 022088 138 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 165 (303)
Q Consensus 138 ~q~~~n~l------~~~~~------~~~~~~~~~~gi~vi 165 (303)
+-+.-|.. +...+ .+.+++++++|..+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 22222221 11111 367889999997654
No 112
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=39.95 E-value=44 Score=24.78 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecccccc
Q 022088 118 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 118 S~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
|.++.+.++++++. ..++++|+...-.-- .....+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~-~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788888898887 346777877554311 1235789999999999999986 554
No 113
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.93 E-value=2.1e+02 Score=25.07 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc--------CC-ccEEE
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--------GK-IKTVA 116 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~--------G~-ir~iG 116 (303)
+..=.|+........+.+.+..-++.|++.|.-. +=...+||.|++. -+ |+.+|
T Consensus 27 ~~~k~~dt~iD~~~v~~~~fq~klensr~kle~S-----------------~Fl~~~lEqLq~~l~~~~~piek~~vclg 89 (281)
T KOG3131|consen 27 RHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQS-----------------DFLLVALEQLQQQLEGIRKPIEKIIVCLG 89 (281)
T ss_pred CCccccccccCcccccHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhHHHhhhccchhheEEEEe
Confidence 3333566665555667889999999999998631 1112233333332 24 48899
Q ss_pred ecCCCH-----HHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccccc
Q 022088 117 LTNFDT-----ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 117 vS~~~~-----~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~ 172 (303)
+.++.. .++.-++....-+...-...+++|+-...+-.++.+..|--++.-.+.+.
T Consensus 90 lG~f~~~~~a~~Qlal~iei~r~fk~~~~~~s~fDPvf~k~E~eyLeslG~cvLs~~e~~~ 150 (281)
T KOG3131|consen 90 LGPFSRTYHALHQLALVIEIHRHFKIRDVEASYFDPVFRKSEKEYLESLGGCVLSKDEAGK 150 (281)
T ss_pred eccccccccHHHHHHHHHHHHHHhccccceeeeeCcchhhhHHHHHHhcCCeEeccCcccc
Confidence 998743 33333333200122222445566655444457778888877776665544
No 114
>PRK09726 antitoxin HipB; Provisional
Probab=39.92 E-value=68 Score=22.87 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCC
Q 022088 217 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 273 (303)
Q Consensus 217 ~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~ 273 (303)
+...++.+.++.|+|..++|-+--++++.+.-..-|.+..+.+.+...+++++.+++
T Consensus 13 l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~ 69 (88)
T PRK09726 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcc
Confidence 346777777788888888777666665555444444442356777777777776543
No 115
>PF14502 HTH_41: Helix-turn-helix domain
Probab=39.17 E-value=27 Score=22.19 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHhhCCCCc
Q 022088 218 LQTLKRIASKHGVS--IPVVAVRYILDQPAVA 247 (303)
Q Consensus 218 ~~~l~~ia~~~g~s--~~qlal~~~l~~~~v~ 247 (303)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 47888999999986 5899999999988765
No 116
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.05 E-value=3.7e+02 Score=26.05 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC----CCHHHHHHHHHc----C-CCee-eecccccccccChhhhHHHHHHHhCCeEE
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTN----FDTERLRIILEN----G-IPVV-SNQVQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~----~~~~~l~~~~~~----~-~~~~-~~q~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
.+.+++.++.++++..++.+-+.. .+...+.++++. + .++. ..+...+.+.+ +.++++..++.|+..+
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVHI 301 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcEE
Confidence 467888999998776678776652 234444444332 2 2221 13343333322 3578899999888665
Q ss_pred ee
Q 022088 166 TY 167 (303)
Q Consensus 166 a~ 167 (303)
..
T Consensus 302 ~i 303 (497)
T TIGR02026 302 SL 303 (497)
T ss_pred EE
Confidence 44
No 117
>PRK10200 putative racemase; Provisional
Probab=38.86 E-value=2.5e+02 Score=24.07 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCC----------CC-cHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NP-GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 129 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~----------~~-~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~ 129 (303)
|.+..++=++..-.+.+.++++.+.+|.++.. .+ ..+...+.++.|.+.| +..+.+...+.....+.+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 55777777778888899999999999997421 11 1345667778887776 799999887776554444
Q ss_pred H
Q 022088 130 E 130 (303)
Q Consensus 130 ~ 130 (303)
.
T Consensus 94 ~ 94 (230)
T PRK10200 94 E 94 (230)
T ss_pred H
Confidence 3
No 118
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=38.60 E-value=1.4e+02 Score=27.77 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 98 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 98 ~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+-..++.+|.+.|.+.++-.-.-..-.+...... ...+. .-|...-...-+.+++.|+++||.+|.-+
T Consensus 10 D~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 10 DRPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred CcHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 3456677788888888886543322222221111 00111 11222212234578999999999998763
No 119
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=38.55 E-value=1.3e+02 Score=25.76 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHH-----HHHHHHHHhhcCCCcccEEEE
Q 022088 12 PLLTWLIYMGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIV-----RESIDVSRRRMDVPCLDMLQF 86 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i-----~~sve~SL~~Lg~d~iDl~~l 86 (303)
.+++.|++.|+.-+-+.+.|+........... -++-++-++... ....+.- ..++++. .++|.|-||++.-
T Consensus 23 ~~~~~a~~~~~~av~v~p~~~~~~~~~~~~~~-~~~~~vi~fp~g--~~~~~~k~~~~~~~~ve~A-~~~GAd~vd~vi~ 98 (236)
T PF01791_consen 23 KLCREAIEYGFDAVCVTPGYVKPAAELLAGSG-VKVGLVIGFPFG--TSTTEPKGYDQIVAEVEEA-IRLGADEVDVVIN 98 (236)
T ss_dssp HHHHHHHHHTSSEEEEEGGGHHHHHHHSTTST-SEEEEEESTTTS--SSTHHHHTCEEEHHHHHHH-HHTT-SEEEEEEE
T ss_pred HHHHHHHHhCCCEEEECHHHHHHHHHHhhccc-cccceEEEeCCC--CCccccccccchHHHHHHH-HHcCCceeeeecc
Confidence 57889999999999898999887654443211 145555555433 3344444 5777776 6789999999988
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHc
Q 022088 87 HWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 87 H~~~~~~~~~~~~~~al~~l~~~ 109 (303)
..+..... .....+.+.+++++
T Consensus 99 ~~~~~~~~-~~~~~~~i~~v~~~ 120 (236)
T PF01791_consen 99 YGALGSGN-EDEVIEEIAAVVEE 120 (236)
T ss_dssp HHHHHTTH-HHHHHHHHHHHHHH
T ss_pred cccccccc-HHHHHHHHHHHHHH
Confidence 75433322 45555555554443
No 120
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.19 E-value=1.9e+02 Score=26.57 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeecccccccc-cChhhhHHHHHHHhCCeEEeec
Q 022088 99 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 99 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~-~~~~~~~~~~~~~~gi~via~s 168 (303)
-++.+.+|++..-+. +.|=|.++.+++..++..+ -++++|+.....- -..-.++.+.|+++|+.++..+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 467788888776554 6677778999999888763 4778888765431 1123579999999999998665
No 121
>PRK02866 cyanate hydratase; Validated
Probab=37.96 E-value=69 Score=25.67 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 022088 219 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 283 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~ 283 (303)
+.+.+.-.+.|.|-.++|=+==++...+++++-|.+.-++++.+...+.+ .|+++....|...
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 33444444456666665555444544555566666655788888888876 6899887777654
No 122
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.69 E-value=3.2e+02 Score=24.99 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEE--------ecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---CCHHHHHH
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQF--------HWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRI 127 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~l--------H~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~---~~~~~l~~ 127 (303)
.++.+.+. .+-+.|.+.|+|+|.+-.. ..-....+++ +.++++.+..+. .+...+.. .+.+.++.
T Consensus 20 ~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~-e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL-EYIEAAADVVKR--AKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChH-HHHHHHHHhCCC--CEEEEEeccCccCHHHHHH
Confidence 45666554 4555699999999999621 1101112222 333333333222 34333332 35678888
Q ss_pred HHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEee
Q 022088 128 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 128 ~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~ 167 (303)
+.+.++ +.+.+..+.-+-..-.+.++++++.|..+...
T Consensus 96 a~~~gv--d~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 96 AYDAGA--RTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHCCC--CEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 877654 34444444322223457899999999876643
No 123
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=37.53 E-value=1.7e+02 Score=21.68 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=42.3
Q ss_pred CccceEEEccccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 022088 43 WIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 107 (303)
Q Consensus 43 ~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~al~~l~ 107 (303)
.|=.+.|+-|++.. ..+..+++.+.++.+... ....|++++-.+.....++.++.+.|+.|.
T Consensus 41 ~RlGi~vsKK~g~A---V~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKNA---VERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCch---hHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 34477888887642 345666666666665443 236899999988777666888888887763
No 124
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=37.49 E-value=1.1e+02 Score=27.68 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=59.8
Q ss_pred cEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHH
Q 022088 82 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 159 (303)
Q Consensus 82 Dl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~ 159 (303)
++.++-.|-. .+.++.+.+|++...+. +.|=|.++...++.++.. .-++++|+..+.+-- ..-.++...|++
T Consensus 199 ~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-~~~dvi~~d~~~~GGit~~~~~~~~A~~ 272 (324)
T TIGR01928 199 QLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-GNVKVINIKPGRLGGLTEVQKAIETCRE 272 (324)
T ss_pred CCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-CCCCEEEeCcchhcCHHHHHHHHHHHHH
Confidence 4555555421 24457788888776554 668888999999998886 347777877655321 123578999999
Q ss_pred hCCeEEeeccccccc
Q 022088 160 TGVKLITYGTVMGGL 174 (303)
Q Consensus 160 ~gi~via~spl~~G~ 174 (303)
+|+.++..+.+..|+
T Consensus 273 ~gi~~~~~~~~es~i 287 (324)
T TIGR01928 273 HGAKVWIGGMLETGI 287 (324)
T ss_pred cCCeEEEcceEcccH
Confidence 999999876665553
No 125
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=37.18 E-value=1.9e+02 Score=27.13 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeeccc
Q 022088 100 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 100 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl 170 (303)
++.+.+|++...+. +.|-|.++.++++++++.+ -++++|......-- ..-.++.+.|+++|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56777788776655 6677777888888888863 47777777654311 12357999999999999987764
No 126
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.07 E-value=36 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.2
Q ss_pred cChhhhHHHHHHHhCCeEEeecccc
Q 022088 147 MRPQQKMAELCQLTGVKLITYGTVM 171 (303)
Q Consensus 147 ~~~~~~~~~~~~~~gi~via~spl~ 171 (303)
+..-.++++.|+++||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4455789999999999999998775
No 127
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=36.90 E-value=64 Score=20.18 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC
Q 022088 221 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 270 (303)
Q Consensus 221 l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~ 270 (303)
++++|+..|+|++.+ ..+|+.+. -+... +.+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~--tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEE--TRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHH--HHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHH--HHHHHHHHHHHHCC
Confidence 678999999998754 44555542 22345 67788877776654
No 128
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=36.88 E-value=3.3e+02 Score=24.85 Aligned_cols=71 Identities=6% Similarity=0.047 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeecccccc
Q 022088 100 LNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 100 ~~al~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
++.|.++++.-.+ -+.|=|-++.++...++.. ...+++|+..+.+ ..-.+.++.|+++|+.++..|.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-~a~dvi~ik~~~~--GGit~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARA-GAADVAVLKVAPL--GGVRAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-CCCCEEEeCcchh--CCHHHHHHHHHHcCCcEEEeCCcccH
Confidence 4556666655333 3455666777888888776 3477777777665 33356788999999999988777655
No 129
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=36.69 E-value=1.9e+02 Score=27.32 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeeccc
Q 022088 98 DALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 98 ~~~~al~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl 170 (303)
+.++.+.+|++. +.--..+=|.++.+.++.++.. --.+++|+..+-.-- ....++.++|+++||.++..+..
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 346667777655 3444556677888999998886 346777777664321 12457899999999999987654
No 130
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=36.68 E-value=2e+02 Score=28.81 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeec
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q 139 (303)
+.+.++.. ..+|.|++=+.+......... .+.....+.+......++.+||- |.+++.+.++.+. ..++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 44555544 458999999876554322232 23313444443333457889996 7888899888876 6789999
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 022088 140 VQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 140 ~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
++-+.- ....+.++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 986531 111234444444455544
No 131
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=36.68 E-value=3.4e+02 Score=24.92 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=45.3
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHH-HHHHHHHHHHcCCccEEEecCCCHHH
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTER 124 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~-~~~al~~l~~~G~ir~iGvS~~~~~~ 124 (303)
.++++|=.. +-+.+.++++.-. +-|.. |+.+||........+++ -+.+|..|.+.= ---+|+|.|+..-
T Consensus 149 PiIlSTGma------~~~ei~~av~~~r-~~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~ 218 (347)
T COG2089 149 PIILSTGMA------TIEEIEEAVAILR-ENGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGI 218 (347)
T ss_pred CEEEEcccc------cHHHHHHHHHHHH-hcCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccch
Confidence 466666543 3466777776544 34433 99999986543333444 367777777663 5678999998764
Q ss_pred HHH
Q 022088 125 LRI 127 (303)
Q Consensus 125 l~~ 127 (303)
+.-
T Consensus 219 ~a~ 221 (347)
T COG2089 219 LAP 221 (347)
T ss_pred hHH
Confidence 443
No 132
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=36.62 E-value=96 Score=25.52 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=53.6
Q ss_pred HcCCceeeh--------HhHHHHH---HHhccCCCCccceEEEccccCC---------CCCCCHHHHHHHHHHHHhhcCC
Q 022088 19 YMGLLKISM--------ASSSIEF---VERGHQSSWIRSEGDLTKWVPP---------PVKMTSSIVRESIDVSRRRMDV 78 (303)
Q Consensus 19 ~~Gi~~~Dt--------A~~y~~~---~~~~~~~~~r~~~~I~tK~~~~---------~~~~~~~~i~~sve~SL~~Lg~ 78 (303)
..++-++|| +..|.|+ ++.....+.|=+++|.++--.+ ++.-.+..+..-+++.|++-+.
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~ 157 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI 157 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence 458889998 3444442 2222233445578777663211 1223667888888889988877
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 022088 79 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 110 (303)
Q Consensus 79 d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G 110 (303)
.|+ .|..++.... ...++++.+++..++
T Consensus 158 ~~v---~i~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 158 PFV---VIEGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred cEE---EEcCCCHHHH-HHHHHHHHHHHHhcc
Confidence 663 3444444333 457888888888776
No 133
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=36.38 E-value=76 Score=29.44 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=62.6
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccCh---h----hhHHHHHHHhCCeEEeecccccccc
Q 022088 103 LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP---Q----QKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 103 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~---~----~~~~~~~~~~gi~via~spl~~G~L 175 (303)
+.+|-+.|.--.+=.|+.+.+.+..+.+.+..+.-+...+|.+-+.. . .+.=.+.++.|+.+.|+-|-..+ .
T Consensus 104 ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~-~ 182 (357)
T PF05913_consen 104 IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDEN-K 182 (357)
T ss_dssp HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS--
T ss_pred HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCc-c
Confidence 34454457777777888888889888887655665555566553322 1 23345678889999999886532 2
Q ss_pred CCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCC
Q 022088 176 SEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRL 255 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~ 255 (303)
.|....+ .| .+ ++|.--+..+|.+.+...+.|.-|++|=..
T Consensus 183 rGPl~~G---LP--------------------------------Tl----E~hR~~~p~~aa~~L~~~~~iD~V~IGD~~ 223 (357)
T PF05913_consen 183 RGPLYEG---LP--------------------------------TL----EKHRNLPPYAAALELFALGLIDDVIIGDPF 223 (357)
T ss_dssp BTTT-S-----B--------------------------------SB----GGGTTS-HHHHHHHHHHTTT--EEEE-SC-
T ss_pred cCCccCC---CC--------------------------------cc----HHHcCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 2221111 11 11 122223345677788888889999998775
Q ss_pred CCHhHHHHhHhh
Q 022088 256 GLAEHIQDTNAI 267 (303)
Q Consensus 256 ~~~~~l~en~~a 267 (303)
.+.+++++....
T Consensus 224 ~s~~el~~~~~~ 235 (357)
T PF05913_consen 224 ASEEELKQLAQY 235 (357)
T ss_dssp --HHHHHHHHHC
T ss_pred CCHHHHHHHHHH
Confidence 555666666555
No 134
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=36.04 E-value=3.7e+02 Score=25.22 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEeeccccccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~-~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
+..++..++.+.+.+.++.+-+...+.+.+++++....+..++..+-|+.-+-. -+++.+.|+++|+.++.=...+.|.
T Consensus 109 Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 109 YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 345555566655555566666666677778777654455666666767654322 3578999999999999877776553
No 135
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=36.00 E-value=2e+02 Score=27.07 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecc
Q 022088 99 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 99 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~sp 169 (303)
-++.+.+|++.-.+. +.|=|.++...++.+++.+ -++++|+...-.-- ..-.++.+.|+.+|+.++.++.
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~ 316 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGP 316 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccC
Confidence 356788888876665 6777888999999998873 47888877664321 1235789999999999987654
No 136
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.94 E-value=4.1e+02 Score=25.71 Aligned_cols=105 Identities=9% Similarity=-0.026 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCC------CHHHHHHHHHcC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNF------DTERLRIILENG 132 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G-~ir~iGvS~~------~~~~l~~~~~~~ 132 (303)
.+++.+.+.++...++.|+.. +.+........ -..+.+-++.++++| .-..|++++. +.+.++.+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 488999999999888888754 33443332222 345666777888887 4345555431 345555555554
Q ss_pred CCe------eeecccccccccCh----hhhHHHHHHHhCCeEEeec
Q 022088 133 IPV------VSNQVQHSVVDMRP----QQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 133 ~~~------~~~q~~~n~l~~~~----~~~~~~~~~~~gi~via~s 168 (303)
..- +..+-....++... -.+.+..++++||.+.+.-
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~ 343 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQF 343 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEE
Confidence 221 11111122222211 2467889999999876543
No 137
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=35.86 E-value=92 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 022088 211 WSQFQVLLQTLKRIASKHGVSIPVVAVRY 239 (303)
Q Consensus 211 ~~~~~~~~~~l~~ia~~~g~s~~qlal~~ 239 (303)
++...+.+..|.++|++.|++..+++.-.
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677789999999999999999987543
No 138
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.82 E-value=3.6e+02 Score=24.90 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHhhcC------CCcccEEEEecC-----------CCCCCcHHHHHHHHHH-HHHcCC---ccEEEec--CCCHHHHHH
Q 022088 71 VSRRRMD------VPCLDMLQFHWW-----------DYSNPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRI 127 (303)
Q Consensus 71 ~SL~~Lg------~d~iDl~~lH~~-----------~~~~~~~~~~~~al~~-l~~~G~---ir~iGvS--~~~~~~l~~ 127 (303)
..|...+ .+....+-||.+ ....+ ++++++++.+ +.+.|+ +++.=+. |.+.+.+++
T Consensus 197 ~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~-l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 197 PQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP-IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC-HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Q ss_pred HHHc--CCCeeeecccccccccCh--------hhhHHHHHHHhCCeEEeeccccc------cccCCcccC
Q 022088 128 ILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG------GLLSEKFLD 181 (303)
Q Consensus 128 ~~~~--~~~~~~~q~~~n~l~~~~--------~~~~~~~~~~~gi~via~spl~~------G~L~~~~~~ 181 (303)
+.+. +.+..++-++||++.... -..+.+..+++|+.+......+. |.|..++..
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~~~ 345 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDANAACGQLRRNARR 345 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchhhccccchhcccC
No 139
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=35.64 E-value=3e+02 Score=24.02 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 58 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 58 ~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
+..+.+...+-.+-+.+-+++++|=+=.+..+....|+.-+++++-+.|+++|-+-. =.++.++-..+++.+.| ..+
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d~G--caa 147 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEDAG--CAA 147 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHHTT---SE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHCC--CCE
Confidence 466889999999999999999999988888777667777899999999999997543 34556777777777753 455
Q ss_pred ecccccccccCh----hhhHHHHHHHhCCeEEeeccc
Q 022088 138 NQVQHSVVDMRP----QQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 138 ~q~~~n~l~~~~----~~~~~~~~~~~gi~via~spl 170 (303)
++.-=+++-... ...+--.+++.++.+|.-.-+
T Consensus 148 vMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGi 184 (247)
T PF05690_consen 148 VMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGI 184 (247)
T ss_dssp BEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES--
T ss_pred EEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCC
Confidence 555555553221 122444466678999976544
No 140
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.00 E-value=1.1e+02 Score=25.06 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCcc----cEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 022088 65 VRESIDVSRRRMDVPCL----DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 131 (303)
Q Consensus 65 i~~sve~SL~~Lg~d~i----Dl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 131 (303)
.+..++..++++|.+.- +.+.-.+. ...+ +.++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYL-RLPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 45667777788886521 11111111 1122 467788899999987 55566888887777776664
No 141
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=34.87 E-value=1.6e+02 Score=25.25 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=52.1
Q ss_pred HHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHH----HHHHHHc-CCCeeeecccccc
Q 022088 70 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTER----LRIILEN-GIPVVSNQVQHSV 144 (303)
Q Consensus 70 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~----l~~~~~~-~~~~~~~q~~~n~ 144 (303)
+..-+.||+. ++.+.-+.......++..++|. +=+|.++-+..-..+. ++.+... |. ..+.|
T Consensus 51 ~~qA~algip---l~~~~~~g~~~~~~~~l~~~l~----~~~v~~vv~GdI~~~~~r~~~e~vc~~lGl------~~~~P 117 (218)
T PF01902_consen 51 EAQAEALGIP---LIEIPTSGDEEDYVEDLKEALK----ELKVEAVVFGDIDSEYQRNWVERVCERLGL------EAVFP 117 (218)
T ss_dssp HHHHHHHT-----EEEEEE---CCCHHHHHHHHHC----TC--SEEE--TTS-HHHHHHHHHHHHHCT-------EEE-T
T ss_pred HHHHHHCCCC---EEEEEccCccchhhHHHHHHHH----HcCCCEEEECcCCcHHHHHHHHHHHHHcCC------EEEec
Confidence 3344567763 4444433222221233333333 3337777655433332 3333332 33 23446
Q ss_pred cccChhhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHH
Q 022088 145 VDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRI 224 (303)
Q Consensus 145 l~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 224 (303)
+......+++...-+.|+..+.-+.=+.|+ ...+. +...-.+.++.|.++
T Consensus 118 LW~~d~~~ll~e~i~~Gf~aiIv~V~~~~L-~~~~L-----------------------------Gr~l~~e~i~~L~~~ 167 (218)
T PF01902_consen 118 LWGRDREELLREFIESGFEAIIVKVDADGL-DESFL-----------------------------GRELDRELIEELPEL 167 (218)
T ss_dssp TTT--HHHHHHHHHHTT-EEEEEEEESTT---GGGT-----------------------------T-B--HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEEEeccCC-ChHHC-----------------------------CCCccHHHHHHHHHH
Confidence 655556678888888998877766655553 11111 112233567888888
Q ss_pred HHHhCCCH
Q 022088 225 ASKHGVSI 232 (303)
Q Consensus 225 a~~~g~s~ 232 (303)
++++|+.|
T Consensus 168 ~~~~gvdp 175 (218)
T PF01902_consen 168 NKKYGVDP 175 (218)
T ss_dssp HHHH---T
T ss_pred HhhcCccc
Confidence 88988875
No 142
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=34.77 E-value=3.2e+02 Score=24.08 Aligned_cols=107 Identities=13% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEec-CC-----CCCCcHHHHHHHHHHHHHcCCccEEEecCCCH---------H
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------E 123 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~-~~-----~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~---------~ 123 (303)
+.++..+...+... ..+|++. ++.|-. +. .....+....+-++.+++..---+||+..+.. .
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 69 GATREEIREILREY-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHH
Confidence 44667777777644 7777542 333322 21 11112344555555555542335788776421 2
Q ss_pred HHHHH---HHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeecccccccc
Q 022088 124 RLRII---LENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 124 ~l~~~---~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L 175 (303)
+++.+ ++.|..+.+-|.-|+. ..-.++++.|++.|+.+ |+--|+.
T Consensus 146 ~~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 146 DIENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred HHHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 33333 3347788888998876 44457889999998775 5656653
No 143
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=34.69 E-value=28 Score=22.02 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=15.3
Q ss_pred hcHHHHHHHHHcCCceee
Q 022088 9 LDLPLLTWLIYMGLLKIS 26 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~D 26 (303)
-.+.++-.|++.|.+.||
T Consensus 30 ~sl~~Li~aL~~G~~~F~ 47 (47)
T PF14615_consen 30 KSLPLLIDALQQGTDMFS 47 (47)
T ss_pred hhHHHHHHHHHhcccccC
Confidence 357889999999999986
No 144
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.35 E-value=3.9e+02 Score=24.89 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=16.6
Q ss_pred HHHHHHcCCceeeh--HhHHH-HHHHhcc
Q 022088 14 LTWLIYMGLLKISM--ASSSI-EFVERGH 39 (303)
Q Consensus 14 v~~Al~~Gi~~~Dt--A~~y~-~~~~~~~ 39 (303)
-+.|.++|+..++. |..|+ .+++...
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~ 183 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPL 183 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCc
Confidence 46788999988886 44463 3444443
No 145
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=34.09 E-value=3e+02 Score=25.47 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 137 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 137 (303)
.++.+.. ..+-+.|.++|+++|++- +|.. + ++-++.+..+.+.+. .+-.+.+....+.++.+.+.+.+...
T Consensus 18 ~~s~~~k-~~ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQK-VEIARKLDELGVDVIEAG---FPIA--S--EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEe---CCCC--C--hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 3455544 445556999999999974 3322 1 233566667766555 45556667788889988887654332
Q ss_pred ecccccccc------cCh------hhhHHHHHHHhCCeEE
Q 022088 138 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 165 (303)
Q Consensus 138 ~q~~~n~l~------~~~------~~~~~~~~~~~gi~vi 165 (303)
+-+.-|... +.. -.+.++++++.|..+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 222222221 111 2367889999997653
No 146
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.84 E-value=1.4e+02 Score=26.21 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.2
Q ss_pred hhHHHHHHHhCCeEEee
Q 022088 151 QKMAELCQLTGVKLITY 167 (303)
Q Consensus 151 ~~~~~~~~~~gi~via~ 167 (303)
...++.|++.|..++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 46889999999998865
No 147
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=33.74 E-value=1e+02 Score=17.95 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHH
Q 022088 217 LLQTLKRIASKHGVSIPVVAV 237 (303)
Q Consensus 217 ~~~~l~~ia~~~g~s~~qlal 237 (303)
..+.+.++|++.|.|.+++.-
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 458999999999999887543
No 148
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=33.58 E-value=3e+02 Score=23.38 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC-CH---HHHHHHHHc-CCCeeeeccc
Q 022088 67 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DT---ERLRIILEN-GIPVVSNQVQ 141 (303)
Q Consensus 67 ~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~-~~---~~l~~~~~~-~~~~~~~q~~ 141 (303)
+.++...+.||+.. ..+.-+.......+....+|.+++++| +.++-.... +. ..++.+... +.+ .
T Consensus 46 ~~~~~~A~~lgip~---~~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~------~ 115 (218)
T TIGR03679 46 ELTRLQAEALGIPL---VKIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLK------V 115 (218)
T ss_pred HHHHHHHHHhCCCE---EEEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCe------E
Confidence 45566667888753 233222111222445778889998885 776655432 22 222223222 322 2
Q ss_pred ccccccChhhhHHHHHHHhCCeEEeecccccc
Q 022088 142 HSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
+.|+......+++..+.+.|+..+.-+.-+.|
T Consensus 116 ~~PLw~~~~~el~~~~~~~G~~~~i~~v~~~~ 147 (218)
T TIGR03679 116 FAPLWGRDQEEYLRELVERGFRFIIVSVSAYG 147 (218)
T ss_pred EeehhcCCHHHHHHHHHHCCCEEEEEEEecCC
Confidence 34555555678999999999988776665555
No 149
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=33.49 E-value=2.5e+02 Score=22.40 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=44.4
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
|=.+.|+-|++.. -..+..+++-+.++.+.+. ....|++++-.+.....++.++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4467777787533 2245667777777766542 23459999988877666688888888888866
No 150
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.16 E-value=1.8e+02 Score=24.76 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeeeec
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 139 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~~q 139 (303)
+++...+-+ +.|..-|++.|.+= + . ..+.++.+++++++.-=..||..+ .+.++++.+.+.|..|.+.
T Consensus 25 ~~~~a~~i~-~al~~~Gi~~iEit---l---~---~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs- 93 (212)
T PRK05718 25 KLEDAVPLA-KALVAGGLPVLEVT---L---R---TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS- 93 (212)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEe---c---C---CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC-
Confidence 555555444 45556666665554 2 1 124556666666654446688875 5678899998887666532
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 022088 140 VQHSVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 140 ~~~n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
+....++++.|++.++.++
T Consensus 94 -------P~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 94 -------PGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred -------CCCCHHHHHHHHHcCCCEe
Confidence 2334489999999998877
No 151
>PRK14017 galactonate dehydratase; Provisional
Probab=33.10 E-value=1.9e+02 Score=26.83 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecc
Q 022088 100 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 100 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~sp 169 (303)
++.+.+|++...+. ..|=|.++...++.+++.+ -++++|+..+.+-- ..-.++.+.|+++|+.++.++.
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 46788888877665 6677788999999998873 47888887665421 1235799999999999997764
No 152
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=33.04 E-value=2.8e+02 Score=25.17 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=8.6
Q ss_pred hhHHHHHHHhCCe
Q 022088 151 QKMAELCQLTGVK 163 (303)
Q Consensus 151 ~~~~~~~~~~gi~ 163 (303)
.++++++.+.|+.
T Consensus 248 ~~l~~~l~~~gv~ 260 (321)
T TIGR03822 248 AALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHHhcCCe
Confidence 4566777777765
No 153
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=32.99 E-value=4e+02 Score=24.64 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=56.2
Q ss_pred EEEecCCCC----------CCcHHHHHHHHHHHHH-cCC---ccEEEec--CCCHHHHHHHHHc--CCCeeeeccccccc
Q 022088 84 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVV 145 (303)
Q Consensus 84 ~~lH~~~~~----------~~~~~~~~~al~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l 145 (303)
+-||.+++. ...++++++++.+..+ .|+ |+++=+. |.+.+++.++.+. +.++.++-++||++
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668987522 1126788888876654 443 4444443 4456777766654 45677888899986
Q ss_pred ccC----h-h---hhHHHHHHHhCCeEEeeccccc
Q 022088 146 DMR----P-Q---QKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 146 ~~~----~-~---~~~~~~~~~~gi~via~spl~~ 172 (303)
... + . ..+.++.+++|+.+..+...+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 421 1 1 2356667778999998877655
No 154
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=32.81 E-value=1.7e+02 Score=27.69 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc----CCCeeeecccccccccChhhhHHHHHHHhC--CeEEeecccc
Q 022088 98 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTVM 171 (303)
Q Consensus 98 ~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~~q~~~n~l~~~~~~~~~~~~~~~g--i~via~spl~ 171 (303)
.+++++.+..++++ ++...+++.+-..++. |+.|..+-+..| .+.++..++.+ ++++++.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSRG--- 187 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSRG--- 187 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecCC---
Confidence 57788888866555 6777888888777764 665554433332 45677777543 5666542
Q ss_pred ccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeee
Q 022088 172 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 251 (303)
Q Consensus 172 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~ 251 (303)
+.++..= +.....++=+.+-.+.+-+|+++|++|. .|..+--+..+.
T Consensus 188 Gs~~~~W--------------------------M~~n~~ENPlye~fD~lLeI~~~yDVtl-------SLGDglRPG~i~ 234 (431)
T PRK13352 188 GSFLAAW--------------------------MLHNNKENPLYEHFDYLLEILKEYDVTL-------SLGDGLRPGCIA 234 (431)
T ss_pred HHHHHHH--------------------------HHHcCCcCchHHHHHHHHHHHHHhCeee-------eccCCcCCCccc
Confidence 2222110 0011111113344689999999998873 233333344454
Q ss_pred ccCCCCHhHHHHhH
Q 022088 252 GVRLGLAEHIQDTN 265 (303)
Q Consensus 252 G~~~~~~~~l~en~ 265 (303)
-++ ...|+.|.+
T Consensus 235 Da~--D~aQi~El~ 246 (431)
T PRK13352 235 DAT--DRAQIQELI 246 (431)
T ss_pred cCC--cHHHHHHHH
Confidence 555 667766655
No 155
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=32.66 E-value=2.2e+02 Score=25.55 Aligned_cols=50 Identities=10% Similarity=-0.071 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
-+++.+.+++.+-+++-|.|.||+=+=+........+....++|..|+++
T Consensus 87 ~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 87 TSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred ccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 47899999999999999999999965543222212245566777777765
No 156
>TIGR00035 asp_race aspartate racemase.
Probab=32.62 E-value=3.1e+02 Score=23.31 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC----------C-cHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN----------P-GYLDALNHLTDLKEEGKIKTVALTNFDTERLR 126 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~----------~-~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~ 126 (303)
+.+.+++=++..=.+.+.++++.+.+++|+... . ....+.+.++.|.+. .+.++-++..+.....
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~ 90 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHH
Confidence 557777777777788999999999999985321 1 133566677777665 4899999988776643
No 157
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.36 E-value=2.7e+02 Score=25.91 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=52.6
Q ss_pred HHHHHHHHHH-HHHcC---CccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccCh--------hhhHHHHHHH
Q 022088 96 YLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 159 (303)
Q Consensus 96 ~~~~~~al~~-l~~~G---~ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~~--------~~~~~~~~~~ 159 (303)
++++++++.+ +.+.| +|+++=+. |.+.+++.++.+. +....++-++||++.... -..+.+..++
T Consensus 261 l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 261 LDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6788888875 45556 24555454 4666677776665 455678888999875432 2356777888
Q ss_pred hCCeEEeeccccc
Q 022088 160 TGVKLITYGTVMG 172 (303)
Q Consensus 160 ~gi~via~spl~~ 172 (303)
+|+.+......+.
T Consensus 341 ~Gi~vtvR~~~G~ 353 (368)
T PRK14456 341 AGLQVTVRKSYGT 353 (368)
T ss_pred CCCcEEeeCCCCc
Confidence 9999998877654
No 158
>PRK10060 RNase II stability modulator; Provisional
Probab=32.30 E-value=2.2e+02 Score=28.62 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=69.0
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC-CCCcHHHHHHHHHHHHHcCCccEEEecCCC--H
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFD--T 122 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~al~~l~~~G~ir~iGvS~~~--~ 122 (303)
.+.|+-.+.+. .+....+...+.+.|++.+.+. ..+.+-=... .......+.+.+..|++.|- .+++..|+ .
T Consensus 492 ~~~i~vNls~~--~l~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSAR--QLADQTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCHH--HhCCCcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 34555555543 2233557788888888888653 2233322211 12235678889999999997 55555554 3
Q ss_pred HHHHHHHHcCCCeeeeccccccccc--------ChhhhHHHHHHHhCCeEEee
Q 022088 123 ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 123 ~~l~~~~~~~~~~~~~q~~~n~l~~--------~~~~~~~~~~~~~gi~via~ 167 (303)
..+..+.. .+++.+-+.-+.+.. ..-..++..|+..|+.++|=
T Consensus 567 ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 567 SSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred hhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 34444433 456666666544422 11356899999999998864
No 159
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=32.19 E-value=87 Score=28.37 Aligned_cols=87 Identities=13% Similarity=-0.051 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhH----HHHhhhhccCCchhHHHHHHHHHHH
Q 022088 149 PQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ----KYKRMVDAWGGWSQFQVLLQTLKRI 224 (303)
Q Consensus 149 ~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~i 224 (303)
+-+.+++.|+++||.|+||-.++...-........+|.-+...+....... ....+++ ++.++.-.-+++.+.++
T Consensus 71 pL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln-P~~PeVr~~i~~~v~Ei 149 (311)
T PF02638_consen 71 PLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLN-PGHPEVRDYIIDIVKEI 149 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEEC-CCCHHHHHHHHHHHHHH
Confidence 346799999999999999974433211111111111111110000000000 0001112 22334455678999999
Q ss_pred HHHhCCCHHHHH
Q 022088 225 ASKHGVSIPVVA 236 (303)
Q Consensus 225 a~~~g~s~~qla 236 (303)
+++|.+.-.++=
T Consensus 150 v~~YdvDGIhlD 161 (311)
T PF02638_consen 150 VKNYDVDGIHLD 161 (311)
T ss_pred HhcCCCCeEEec
Confidence 999987755544
No 160
>PRK02399 hypothetical protein; Provisional
Probab=32.08 E-value=1.2e+02 Score=28.58 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=33.9
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 115 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~i 115 (303)
..+-.|-+|.. .-....+.+-|+..| .|.+.+|--.. .. ++||+|.++|.+..+
T Consensus 187 p~Ig~TmfGvT------tp~v~~~~~~Le~~G---yEvlVFHATG~--GG-----raME~Li~~G~~~gV 240 (406)
T PRK02399 187 PLIGLTMFGVT------TPCVQAAREELEARG---YEVLVFHATGT--GG-----RAMEKLIDSGLIAGV 240 (406)
T ss_pred ceEEEecCCCc------HHHHHHHHHHHHhCC---CeEEEEcCCCC--ch-----HHHHHHHHcCCceEE
Confidence 34455666643 223444444555544 69999997422 21 689999999998754
No 161
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.66 E-value=4.3e+02 Score=24.55 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccC----h-h---hhHHHHHHH
Q 022088 96 YLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P-Q---QKMAELCQL 159 (303)
Q Consensus 96 ~~~~~~al~~l~-~~G~---ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~----~-~---~~~~~~~~~ 159 (303)
++++++++.+.. +.|+ |+|+=+. |.+.++++++.+. +.+..++-++||++... + . ..+.+..++
T Consensus 246 l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 246 IESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 567888887554 5555 6666665 5677887777664 45678999999987531 1 1 234556677
Q ss_pred hCCeEEeeccccc
Q 022088 160 TGVKLITYGTVMG 172 (303)
Q Consensus 160 ~gi~via~spl~~ 172 (303)
+|+.+..+...+.
T Consensus 326 ~gi~vtvR~~~G~ 338 (356)
T PRK14462 326 KGLLCTIRESKGL 338 (356)
T ss_pred CCCcEEEeCCCCC
Confidence 8999988866554
No 162
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=31.54 E-value=4.1e+02 Score=24.60 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=57.2
Q ss_pred EEEecCCCCC----------CcHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHHc--CCCeeeecccccc
Q 022088 84 LQFHWWDYSN----------PGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GIPVVSNQVQHSV 144 (303)
Q Consensus 84 ~~lH~~~~~~----------~~~~~~~~al~~l~~~G~ir~iGvS-------~~~~~~l~~~~~~--~~~~~~~q~~~n~ 144 (303)
+-||.|+... ..+++.+++.+...+... +.|-+- |.+.++.+++.+. +.+..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 5678874321 125678888887776555 444332 5667777777765 6677999999999
Q ss_pred cccCh--------hhhHHHHHHHhCCeEEeeccccc
Q 022088 145 VDMRP--------QQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 145 l~~~~--------~~~~~~~~~~~gi~via~spl~~ 172 (303)
..... -....+...++||.+....+-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 86432 13455666677788877766543
No 163
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=31.53 E-value=2e+02 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHhCCCHHHHHHHHHhhCC-CCceeeec
Q 022088 225 ASKHGVSIPVVAVRYILDQP-AVAGSMIG 252 (303)
Q Consensus 225 a~~~g~s~~qlal~~~l~~~-~v~~vi~G 252 (303)
|.-||.|.+.-.|+|++... --+++++|
T Consensus 113 aGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 113 AGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred eCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 44578999999999999987 45667777
No 164
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=31.52 E-value=1.2e+02 Score=25.34 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeecccccc
Q 022088 72 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 144 (303)
Q Consensus 72 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n~ 144 (303)
.+..+|.||+=+.+ .|..... -..+.+.++.+.-..+.+||- |.+.+.+.+.+.. ..++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~---v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY---VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-CTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCc---cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-cCCCEEEECCCC
Confidence 45678998887753 3321111 123445566655555589987 5567878888776 689999988765
No 165
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=31.05 E-value=1.8e+02 Score=27.34 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcC-CccEEEecCC---CHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecccc
Q 022088 97 LDALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVM 171 (303)
Q Consensus 97 ~~~~~al~~l~~~G-~ir~iGvS~~---~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~ 171 (303)
..+++.+..|..+| .|.|+.|.+. +++++++++......+++|.--|-.-. .+-.++-+.|+++|+.+..-..-+
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa 181 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQA 181 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhh
Confidence 46788888887778 7999998875 457777776543334444444333211 234578899999998887766666
Q ss_pred cccc
Q 022088 172 GGLL 175 (303)
Q Consensus 172 ~G~L 175 (303)
-|-+
T Consensus 182 ~Gki 185 (386)
T COG1104 182 VGKI 185 (386)
T ss_pred cCce
Confidence 6644
No 166
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.85 E-value=3.9e+02 Score=23.89 Aligned_cols=108 Identities=8% Similarity=-0.107 Sum_probs=54.8
Q ss_pred hcHHHHHHHHHcCCcee-ehHhH---HHHHHHhccCCCCccceEEEccccCCC---CCCC----HHHHHHHHHHH---Hh
Q 022088 9 LDLPLLTWLIYMGLLKI-SMASS---SIEFVERGHQSSWIRSEGDLTKWVPPP---VKMT----SSIVRESIDVS---RR 74 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~-DtA~~---y~~~~~~~~~~~~r~~~~I~tK~~~~~---~~~~----~~~i~~sve~S---L~ 74 (303)
...++++.|+++|..++ |..+- -.-+..+... . .+++.-.-+.+. .... -+.+...+++. +.
T Consensus 98 ~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~-~---~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~ 173 (282)
T PRK11613 98 SKPEVIRESAKAGAHIINDIRSLSEPGALEAAAETG-L---PVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCE 173 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcC-C---CEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 45788999999998887 33221 1111222221 1 455654433211 0111 12222333333 55
Q ss_pred hcCCCcccEEEEecCC--CCCCcHHHHHHHHHHHHHcCCccEEEecCC
Q 022088 75 RMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNF 120 (303)
Q Consensus 75 ~Lg~d~iDl~~lH~~~--~~~~~~~~~~~al~~l~~~G~ir~iGvS~~ 120 (303)
..|++.=++++=-... ......-++++.++++++-|.=-.+|+|+=
T Consensus 174 ~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~SRK 221 (282)
T PRK11613 174 AAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLVGMSRK 221 (282)
T ss_pred HcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 5677632333211111 111123478888999999899889999953
No 167
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.79 E-value=1.5e+02 Score=28.54 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=42.9
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeeeecccccc
Q 022088 73 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 144 (303)
Q Consensus 73 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~~q~~~n~ 144 (303)
...+|.|++=+.+......... .+....+.+... ++.+||- |-+++.+.++.+. ..++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCCC
Confidence 3457889888864332222222 233333333322 8899988 7788999888876 678999998754
No 168
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.68 E-value=4.3e+02 Score=24.25 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCC-CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH--HcCCCeee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL--ENGIPVVS 137 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~~ 137 (303)
+.+.+..+++.-.+ -|.+.-|+.++|+... ..+..+--+.++..|++.=. .-+|+|.|+........ ..|. .+
T Consensus 144 tl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAvalGA--~i 219 (329)
T TIGR03569 144 TLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVALGA--TV 219 (329)
T ss_pred CHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHHcCC--CE
Confidence 67889988887754 3432225899998643 22222234667777776533 57999998764332222 2243 36
Q ss_pred ecccccc
Q 022088 138 NQVQHSV 144 (303)
Q Consensus 138 ~q~~~n~ 144 (303)
+.-+|.+
T Consensus 220 IEkH~tl 226 (329)
T TIGR03569 220 IEKHFTL 226 (329)
T ss_pred EEeCCCh
Confidence 6666655
No 169
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=30.67 E-value=2.1e+02 Score=27.19 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=56.0
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-------CCCeeeeccccccc
Q 022088 73 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-------GIPVVSNQVQHSVV 145 (303)
Q Consensus 73 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-------~~~~~~~q~~~n~l 145 (303)
++.+|++|- ++..|........+. ...+-+.|-...+|....+++++++.+.. +-++-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~eL---VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASAEL---VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCHHH---HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777664 344443311112333 33455789999999999999998877654 124454443 3333
Q ss_pred ccChhhhHHHHHHHhCCeEEeecc
Q 022088 146 DMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 146 ~~~~~~~~~~~~~~~gi~via~sp 169 (303)
++..+.+.++.+.++||.++..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 333356789999999999887654
No 170
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=30.53 E-value=91 Score=27.76 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=56.4
Q ss_pred HHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---CCHHHHHHHHH---c-CCCeeeecccccc
Q 022088 72 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIILE---N-GIPVVSNQVQHSV 144 (303)
Q Consensus 72 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~---~~~~~l~~~~~---~-~~~~~~~q~~~n~ 144 (303)
++++..-+..|+..+..|....-+ + +..++.... +|=|+- +...+++.+++ . +++..++-+.||+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~gCp---V---i~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTGCP---V---IASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCCCh---H---HHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 344444444788999887544332 2 233333333 344432 33344444444 3 8899999999976
Q ss_pred cccChhhhHHHHHHHhCCeEEeecccccc
Q 022088 145 VDMRPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 145 l~~~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
-+ . ++-++|++.|+.+++.-|+..-
T Consensus 227 g~---s-~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 227 GD---S-EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred Cc---h-HHHHHHHHcCCCeeEECCcchh
Confidence 53 2 6889999999999999998654
No 171
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=30.41 E-value=2.6e+02 Score=21.81 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=41.3
Q ss_pred ccceEEEcc-ccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 44 IRSEGDLTK-WVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 44 r~~~~I~tK-~~~~~~~~~~~~i~~sve~SL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
|=.+.|+.| ++. -..+..+++-+.++.+... ..-.|++++..+.....++.++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g~---AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVKL---AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCcc---HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 335677777 543 2245666666666665443 24689999999877666677777777776544
No 172
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.34 E-value=2.8e+02 Score=26.19 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChh-hhHHHHHHHhCCeEEeecccccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~-~~~~~~~~~~gi~via~spl~~G 173 (303)
+..+..-++++.++.-|....+-..+.+.+.+.+.. +.+..++..+-|++.+-.+ ..+.+.|+++|+.++.-+.++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 567888888888888888888887777666666653 5789999999999876543 46889999999999999999888
Q ss_pred ccCC
Q 022088 174 LLSE 177 (303)
Q Consensus 174 ~L~~ 177 (303)
.+..
T Consensus 192 ~~q~ 195 (396)
T COG0626 192 VLQR 195 (396)
T ss_pred cccC
Confidence 7754
No 173
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=30.17 E-value=1.2e+02 Score=23.33 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHc-----CCCeeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 120 FDTERLRIILEN-----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 120 ~~~~~l~~~~~~-----~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
-+.+.+.+++.. +..+..+-.--++-....+..+++++++.|+.+..|++=
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-HH
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECHH
Confidence 344555555443 344444444444433344678999999999999999764
No 174
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=30.12 E-value=73 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhC
Q 022088 218 LQTLKRIASKHGVSIPVVAVRYILDQ 243 (303)
Q Consensus 218 ~~~l~~ia~~~g~s~~qlal~~~l~~ 243 (303)
++.|++||...|+|..+++-..-...
T Consensus 23 W~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 23 WDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 48999999999999998877664443
No 175
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.96 E-value=3.1e+02 Score=25.41 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccC-----hh---hhHHHHHHH
Q 022088 96 YLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 159 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~----ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~-----~~---~~~~~~~~~ 159 (303)
+++++++++++.+++. ++++=+. |.+.++++++.+. +.+..++-++||++... .. ..+.+.+++
T Consensus 245 l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 245 LEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 5789999998877542 3455444 5566777776664 45567888899987532 11 345666888
Q ss_pred hCCeEEeeccccc
Q 022088 160 TGVKLITYGTVMG 172 (303)
Q Consensus 160 ~gi~via~spl~~ 172 (303)
+|+.+......+.
T Consensus 325 ~gi~v~ir~~~g~ 337 (356)
T PRK14455 325 NGVNCTIRREHGT 337 (356)
T ss_pred CCCcEEEeCCCCc
Confidence 8999888766544
No 176
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=29.53 E-value=1.4e+02 Score=27.44 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecccccc
Q 022088 99 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 99 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
.++.+.+|++...+. +.|=|.++.+++..++..+ .++++|+.....-- ..-.++..+|+++|+.++..+-...|
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 456777787776555 6677777888888888763 36677776544311 12357889999999998865444333
No 177
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.13 E-value=3.7e+02 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=25.0
Q ss_pred cccccccChhhhHHHHHHHhCCeEEeeccccccc
Q 022088 141 QHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 141 ~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
.+.|+.....++++...-+.|+..+.-+.-+.|+
T Consensus 114 ~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~a~gL 147 (223)
T TIGR00290 114 SFAPLWHRDPEKLMEEFVEEKFEARIIAVAAEGL 147 (223)
T ss_pred EeccccCCCHHHHHHHHHHcCCeEEEEEEecCCC
Confidence 3456666666788988899999888777666663
No 178
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.08 E-value=4.3e+02 Score=24.63 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=47.4
Q ss_pred HHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecc
Q 022088 99 ALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 99 ~~~al~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~sp 169 (303)
-++.+.+|.+. +.=-..|=|.++.+.++++++. --.+++|+..+-.-- ....++.++|+.+|+.++..+.
T Consensus 244 ~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 244 QIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-GAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-CCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 35666666655 4444556667788888888876 346777777664311 1235789999999999998654
No 179
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=29.02 E-value=1.1e+02 Score=23.84 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 68 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 68 sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
.+++-|+.+....+|.++++..+.......++...++.|.+.
T Consensus 56 ~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 334444444444455555554444333333444444444443
No 180
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=28.84 E-value=1.8e+02 Score=23.20 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCe
Q 022088 58 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPV 135 (303)
Q Consensus 58 ~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~ 135 (303)
+..|-+.+.+.+++--+.+|. .++.+|=.. ..+.++.+.+..+ +|.|-.=|--+|+.-.++.++.. ...
T Consensus 24 G~~tl~~i~~~~~~~a~~~g~-~~~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-~~~ 94 (146)
T PRK13015 24 GHETLADVEALCRAAAEALGL-EVEFRQSNH-------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-LEL 94 (146)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-CCC
Confidence 355889999999999999997 466666432 3577788887754 35555556666777778888876 555
Q ss_pred eeecccccccc
Q 022088 136 VSNQVQHSVVD 146 (303)
Q Consensus 136 ~~~q~~~n~l~ 146 (303)
-++.++.|-..
T Consensus 95 P~VEVHiSNi~ 105 (146)
T PRK13015 95 PVIEVHISNVH 105 (146)
T ss_pred CEEEEEcCCcc
Confidence 66677777654
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.77 E-value=3.2e+02 Score=26.26 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC----CCcHHHHHHHHHHHHHc-CCccE---------EEecCCCHHHH
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEE-GKIKT---------VALTNFDTERL 125 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~----~~~~~~~~~al~~l~~~-G~ir~---------iGvS~~~~~~l 125 (303)
++.+.... +-..|.++|++.|++. |..... .. -++.|+.++.+++. ..++. +|.+++..+.+
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~-~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFL-NEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccC-CCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 44455544 4455899999999993 111000 01 12346666666665 22332 46666554444
Q ss_pred H----HHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEe
Q 022088 126 R----IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 126 ~----~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via 166 (303)
+ .+.+.|+ +.+.+..++-+...-.+.++++++.|..+.+
T Consensus 99 ~~~v~~A~~~Gv--d~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVENGI--DIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHCCC--CEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 4 4444444 3444444433323345688999999976543
No 182
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.74 E-value=4.7e+02 Score=24.14 Aligned_cols=77 Identities=18% Similarity=0.062 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccC-----hh---hhHHHHHHH
Q 022088 96 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 159 (303)
Q Consensus 96 ~~~~~~al~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~-----~~---~~~~~~~~~ 159 (303)
++++++++.+..+. |+ +-|+=+. |.++++++++.+. +.++.++-++||+..-. .+ ..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 67788877776544 42 1233222 6788888887775 56788999999986432 12 356677888
Q ss_pred hCCeEEeeccccc
Q 022088 160 TGVKLITYGTVMG 172 (303)
Q Consensus 160 ~gi~via~spl~~ 172 (303)
+|+.+..+...+.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999998887655
No 183
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=28.72 E-value=4.5e+02 Score=25.68 Aligned_cols=102 Identities=9% Similarity=0.102 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC----------CccEEEecCCCHHHHHHH
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----------KIKTVALTNFDTERLRII 128 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G----------~ir~iGvS~~~~~~l~~~ 128 (303)
.++.+. +..+-+.|.++|+|+|.+-+ |... ++..++++.+.+.+ ..+-.+++....+.++.+
T Consensus 102 ~fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQ-KLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 446554 44566679999999888844 4222 22233444444332 133446777777778777
Q ss_pred HHc----CCCeeee-------cccccccccCh------hhhHHHHHHHhCCeEEeecc
Q 022088 129 LEN----GIPVVSN-------QVQHSVVDMRP------QQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 129 ~~~----~~~~~~~-------q~~~n~l~~~~------~~~~~~~~~~~gi~via~sp 169 (303)
.+. +.+-..+ +..+++ .... -.+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl-~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKL-KKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 765 1111111 122221 1111 14678899999876555544
No 184
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=28.66 E-value=4.3e+02 Score=23.64 Aligned_cols=101 Identities=8% Similarity=0.022 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEE-ecCCCCC-Cc---HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSN-PG---YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~l-H~~~~~~-~~---~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
.+.+.+.+..++.+ .-|-|-||+=-- .+|.... .. ++.+...++.+++.-.+ -|.|-++.++.++++++.|..
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 35666666665554 557888887422 2343322 11 22366677777754233 488889999999999998654
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+ +|=+ +-+. +.++++.+++.|..++.+.
T Consensus 113 i-INDI--~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 I-INDI--RSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred E-EEEC--CCCC---CHHHHHHHHHcCCCEEEEc
Confidence 3 2111 1121 3367788999999988873
No 185
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=28.22 E-value=4.3e+02 Score=23.57 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC----CccEEEecCCCHHHHHHHHHc
Q 022088 65 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILEN 131 (303)
Q Consensus 65 i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G----~ir~iGvS~~~~~~l~~~~~~ 131 (303)
-+-.+-+.|.++|+|+|.+=+ |. .. +.-.+.++.+.+.| .++..+++......++.+++.
T Consensus 24 ~Ki~ia~~L~~~Gv~~IE~gf---P~--~~--~~e~e~~~~i~~~~~~~~~~~~~al~r~~~~die~a~~~ 87 (284)
T cd07942 24 QKLRFFKLLVKIGFKEIEVGF---PS--AS--QTDFDFVRELIEEDLIPDDVTIQVLTQAREDLIERTFEA 87 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEeC---CC--CC--HHHHHHHHHHHHccCCCCCCEEEEEcCCChhhHHHHHHH
Confidence 455666779999999998872 42 22 22234555554554 477888887777778888775
No 186
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.13 E-value=4.8e+02 Score=24.06 Aligned_cols=85 Identities=20% Similarity=0.187 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcC--C--ccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccC----h----hhhHHHHHHH
Q 022088 96 YLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P----QQKMAELCQL 159 (303)
Q Consensus 96 ~~~~~~al~~l~~~G--~--ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~----~----~~~~~~~~~~ 159 (303)
++++++++.+..+.+ + ++|+=+. |.+.+.+.++.+. +.+..++-++||++... + -..+.+..++
T Consensus 233 l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 233 LAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 567777777766654 2 3455554 5666887777765 45667888999987421 1 1345677888
Q ss_pred hCCeEEeeccccc------cccCCccc
Q 022088 160 TGVKLITYGTVMG------GLLSEKFL 180 (303)
Q Consensus 160 ~gi~via~spl~~------G~L~~~~~ 180 (303)
+|+.+..+...+. |.|..+..
T Consensus 313 ~gi~v~vR~~~G~di~aaCGqL~~~~~ 339 (349)
T PRK14463 313 KHVTVITRSSRGSDISAACGQLKGKLD 339 (349)
T ss_pred CCceEEEeCCCCcchhhccCccccccc
Confidence 9999999987765 55555443
No 187
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.13 E-value=2.9e+02 Score=24.06 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE--EecCCCHHHHHHHHHc---CC
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--ALTNFDTERLRIILEN---GI 133 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~i--GvS~~~~~~l~~~~~~---~~ 133 (303)
..+-+.+..-..+.-+ +--|+.=||+-|+.. +..+++.|++|.+.|-=-.+ |||.|......--.+. ++
T Consensus 58 ~~tLeeIi~~m~~a~~----~Gk~VvRLhSGDpsi--YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~v 131 (254)
T COG2875 58 SLTLEEIIDLMVDAVR----EGKDVVRLHSGDPSI--YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGV 131 (254)
T ss_pred cCCHHHHHHHHHHHHH----cCCeEEEeecCChhH--HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCc
Confidence 3455555554444333 455889999977654 57888999999999875555 7776654332211111 12
Q ss_pred CeeeecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 134 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 134 ~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
.-.++-.+.+.-.+-++.+-+....++|..+..|-..
T Consensus 132 sQtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~L~v 168 (254)
T COG2875 132 SQTVILTRPSGRTPVPEKESLAALAKHGATMVIFLGV 168 (254)
T ss_pred ceeEEEEccccCCCCCchhHHHHHHhcCceeEeeehh
Confidence 2233333444333334667777777788777766443
No 188
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=27.90 E-value=3.6e+02 Score=23.18 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC----CHHHHHHHHHc-CCCeeeeccc
Q 022088 67 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF----DTERLRIILEN-GIPVVSNQVQ 141 (303)
Q Consensus 67 ~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~----~~~~l~~~~~~-~~~~~~~q~~ 141 (303)
+.++..-+.||+.. +.+..+. ...++.-+..+.|++.| |.++-+..- ....++.+... |. ..
T Consensus 48 ~~~~~qA~algiPl---~~~~~~~---~~e~~~~~l~~~l~~~g-v~~vv~GdI~s~~qr~~~e~vc~~~gl------~~ 114 (222)
T TIGR00289 48 HLTDLVAEAVGIPL---IKLYTSG---EEEKEVEDLAGQLGELD-VEALCIGAIESNYQKSRIDKVCRELGL------KS 114 (222)
T ss_pred HHHHHHHHHcCCCe---EEEEcCC---chhHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCC------EE
Confidence 34455667778764 2222221 11123333334455555 777655432 22334444443 43 23
Q ss_pred ccccccChhhhHHHHHHHhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHH
Q 022088 142 HSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTL 221 (303)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (303)
+.|+.+...++++++ -+.|+..+.-+.-+.|+ ...+.. ...-.+.++.|
T Consensus 115 ~~PLW~~d~~~l~e~-i~~Gf~aiIv~v~~~gL-~~~~LG-----------------------------r~id~~~~~~L 163 (222)
T TIGR00289 115 IAPLWHADPEKLMYE-VAEKFEVIIVSVSAMGL-DESWLG-----------------------------RRIDKECIDDL 163 (222)
T ss_pred eccccCCCHHHHHHH-HHcCCeEEEEEEccCCC-ChHHcC-----------------------------CccCHHHHHHH
Confidence 446655555567654 47888877766666653 221111 11122456788
Q ss_pred HHHHHHhCCCH
Q 022088 222 KRIASKHGVSI 232 (303)
Q Consensus 222 ~~ia~~~g~s~ 232 (303)
.++.+++|++|
T Consensus 164 ~~l~~~~gid~ 174 (222)
T TIGR00289 164 KRLNEKYGIHL 174 (222)
T ss_pred HHHHhhcCccc
Confidence 88888888875
No 189
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.68 E-value=4.8e+02 Score=23.89 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH--HHHcCCCeee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI--ILENGIPVVS 137 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~--~~~~~~~~~~ 137 (303)
+.+.+..+++.-.+ -|. -|+.++|+.... .+...--+.+|..|++.-. .-||+|.|+...... ++..|. .+
T Consensus 145 t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva~GA--~i 218 (327)
T TIGR03586 145 TLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVALGA--CV 218 (327)
T ss_pred CHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHHcCC--CE
Confidence 67888888887653 342 378999986332 2212234677777776543 479999887643222 222243 36
Q ss_pred ecccccc
Q 022088 138 NQVQHSV 144 (303)
Q Consensus 138 ~q~~~n~ 144 (303)
+.-++++
T Consensus 219 IEkH~tl 225 (327)
T TIGR03586 219 IEKHFTL 225 (327)
T ss_pred EEeCCCh
Confidence 6666665
No 190
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.63 E-value=2.2e+02 Score=26.68 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChh-hhHHHHHHHhC-CeEEeecccccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 173 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~-~~~~~~~~~~g-i~via~spl~~G 173 (303)
+.++..-++++....-|...=+...+.+.+++++....+..+++.+-|+.-+-.+ ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 4567777776555555554444555778888887755678888999888754443 46889999999 999999999887
Q ss_pred ccC
Q 022088 174 LLS 176 (303)
Q Consensus 174 ~L~ 176 (303)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 654
No 191
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=27.26 E-value=3.1e+02 Score=24.27 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=48.1
Q ss_pred CCCcccEEEEecCCC-------CCCcHHHHHHHHH----HHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeeccccccc
Q 022088 77 DVPCLDMLQFHWWDY-------SNPGYLDALNHLT----DLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 145 (303)
Q Consensus 77 g~d~iDl~~lH~~~~-------~~~~~~~~~~al~----~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l 145 (303)
.++.||.+++-..|. .....+++.++++ ..++.|| .+|+...+++..++.++.|..+.++.....++
T Consensus 166 ~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 166 DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 468899999865321 1111234444444 4667788 57887788899999988888899888888887
Q ss_pred ccCh
Q 022088 146 DMRP 149 (303)
Q Consensus 146 ~~~~ 149 (303)
.+..
T Consensus 244 ~~~~ 247 (267)
T PRK10128 244 TDAL 247 (267)
T ss_pred HHHH
Confidence 5433
No 192
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.23 E-value=5.8e+02 Score=24.69 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH----cCCccEEEec--CCCHHHHHHHHHcC
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 132 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~----~G~ir~iGvS--~~~~~~l~~~~~~~ 132 (303)
.++.+.|.+.++. ++..|...+-++ -.-++....++.+.+.++.+++ .|.++.++|+ ..+.++++.+.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lv--sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALV--AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEE--eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 3578999999975 578997776553 2222122236667777777775 4677777765 46788999998887
Q ss_pred CC-eeeecccccc-----ccc-----Ch--hhhHHHHHHHhCCeEEeeccc
Q 022088 133 IP-VVSNQVQHSV-----VDM-----RP--QQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 133 ~~-~~~~q~~~n~-----l~~-----~~--~~~~~~~~~~~gi~via~spl 170 (303)
+. ..+.|--||. +++ .. .-+.++.+++.|+.-+....|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 53 5556655542 111 11 124677888888875544333
No 193
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=26.83 E-value=41 Score=26.53 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=11.2
Q ss_pred HHHHHHHcCCceeeh
Q 022088 13 LLTWLIYMGLLKISM 27 (303)
Q Consensus 13 lv~~Al~~Gi~~~Dt 27 (303)
-+..+|+.|+|+||.
T Consensus 31 ~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 31 SIREQLESGIRYLDL 45 (146)
T ss_dssp HHHHHHHTT--EEEE
T ss_pred hHHHHHhccCceEEE
Confidence 478899999999995
No 194
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.67 E-value=75 Score=22.71 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHc-CCCeeeec
Q 022088 64 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILEN-GIPVVSNQ 139 (303)
Q Consensus 64 ~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~-G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q 139 (303)
.+=..-+.-.+.||.+..||..+..-.+... .+.+.+.|..+++. |+ +.+...+..++.. ++.+++.|
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHHHH
Confidence 3445566777899999999998876434433 46788899999875 43 4466777777665 55454433
No 195
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.40 E-value=3.2e+02 Score=25.06 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=42.8
Q ss_pred ccEEEecCCCHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEeecccccccc
Q 022088 112 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 112 ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~-~~~~~~~~~~~~gi~via~spl~~G~L 175 (303)
++..-+...+++.+++++....+..++..+.|+.-.. .-+++.+.|+++|+.++.=...+.+++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 4444444456777777665445666777788875322 235799999999999998777755543
No 196
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.38 E-value=3.5e+02 Score=24.98 Aligned_cols=83 Identities=16% Similarity=0.024 Sum_probs=53.2
Q ss_pred ccceEEEccccC-------------CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEec-CCCCCCcHHHHHHHHHHHHHc
Q 022088 44 IRSEGDLTKWVP-------------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 44 r~~~~I~tK~~~-------------~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~-~~~~~~~~~~~~~al~~l~~~ 109 (303)
|..+.|+|-+|= ....++++.|..++...-+. +.++-+.+-. -+|. ..++++++++..+++.
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL-~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPL-DNLDEVLKALEILTAP 177 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCc-ccHHHHHHHHHHHhhc
Confidence 446777777661 01347899999998866322 2344444433 2233 3368899999999877
Q ss_pred CCc----cEEEecCCCHH-HHHHHHH
Q 022088 110 GKI----KTVALTNFDTE-RLRIILE 130 (303)
Q Consensus 110 G~i----r~iGvS~~~~~-~l~~~~~ 130 (303)
.-. |.|-||+.+.. .+.++..
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~ 203 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLE 203 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhh
Confidence 444 78899988753 4666555
No 197
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.31 E-value=3.8e+02 Score=22.26 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCC-CCCCcHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeeeec
Q 022088 63 SIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQ 139 (303)
Q Consensus 63 ~~i~~sve~SL~~Lg~d~iDl~~lH~~~-~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~~q 139 (303)
..+...+.+.|+..+... +-+.+-=.. ............+..|++.|- .+.+.+++. ..+..+.. .+++.+-
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iK 173 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLK 173 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEE
Confidence 445566777777766643 122222111 112223455588999999996 456666543 33333332 4566666
Q ss_pred ccccccccC--------hhhhHHHHHHHhCCeEEee
Q 022088 140 VQHSVVDMR--------PQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 140 ~~~n~l~~~--------~~~~~~~~~~~~gi~via~ 167 (303)
+..+++... .-..++..|+..|+.+++-
T Consensus 174 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 174 IDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 665554321 1246788999999988864
No 198
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=26.19 E-value=2.8e+02 Score=26.25 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEE-ecCCC----------CCCcHH---HHHH-HHHHHHHcCCccEEEecCCCH
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDY----------SNPGYL---DALN-HLTDLKEEGKIKTVALTNFDT 122 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~l-H~~~~----------~~~~~~---~~~~-al~~l~~~G~ir~iGvS~~~~ 122 (303)
..|.+.+.+.++..+ .|+.|+|.+|.+ |.|.. ..|+.+ +.++ ..+.|.+.|. +++|+|||..
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 458888888888766 477999999988 43311 123222 3333 4456677787 9999999986
No 199
>PLN02907 glutamate-tRNA ligase
Probab=25.99 E-value=5.6e+02 Score=26.37 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 129 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~ 129 (303)
......+++.+.|+.||.++ |-. ......++.-.+..++|.++|+.= ++..+.+++++..
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~-d~~-----~~qS~r~~~y~~~a~~Li~~G~aY---~~~~~~~~~~~~~ 319 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKY-DAV-----TYTSDYFPQLMEMAEKLIKEGKAY---VDDTPREQMRKER 319 (722)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCc-----ccccccHHHHHHHHHHHHHcCCee---ecCCCHHHHHHHH
Confidence 44678899999999999987 522 122233667788999999999853 3667777776654
No 200
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=25.88 E-value=4.7e+02 Score=23.23 Aligned_cols=107 Identities=13% Similarity=0.308 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC--------CCCcHHHHHHHHHHHHHc-CCccEEEecCCC--------
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 121 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~--------~~~~~~~~~~al~~l~~~-G~ir~iGvS~~~-------- 121 (303)
+.+...+...+... ..+|++. ++.|-...+ ....++...+-++.+++. |.--+||+..+.
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 44556666655544 7777543 333322110 111234455566666664 444689998763
Q ss_pred HH-HHHHH---HHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEeecccccccc
Q 022088 122 TE-RLRII---LENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 122 ~~-~l~~~---~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~G~L 175 (303)
.+ ++..+ ++.|..+.+-|.-|+. ..-...++.|++.|+.+ |+-.|++
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~----PIi~GI~ 197 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDV---DNFLKFVNDCRAIGIDC----PIVPGIM 197 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecH---HHHHHHHHHHHHcCCCC----CEEeecc
Confidence 11 22232 2347788888998876 33357888999998764 5555653
No 201
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=25.76 E-value=2.2e+02 Score=26.25 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecccccc
Q 022088 99 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 99 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
-++.+.+|++...+. +.|=|-++..++..++.. ..++++|+...-.-- ..-..+...|+.+|+.++..+.+.+|
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKA-SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 356677787776665 778788899999888876 346777776654311 11346889999999999877555444
No 202
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.54 E-value=2.9e+02 Score=25.81 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=56.2
Q ss_pred ccceEEEccccCC-------------CCCCCHHHHHHHHHHHHhhcCC-------------CcccEEEEecCCCCCCcHH
Q 022088 44 IRSEGDLTKWVPP-------------PVKMTSSIVRESIDVSRRRMDV-------------PCLDMLQFHWWDYSNPGYL 97 (303)
Q Consensus 44 r~~~~I~tK~~~~-------------~~~~~~~~i~~sve~SL~~Lg~-------------d~iDl~~lH~~~~~~~~~~ 97 (303)
|..+.|+|-+|=. ..++++..|..++...-+.|+. ..|.=+.+-........++
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 4577888887711 2477999999999877666632 1233222222222223367
Q ss_pred HHHHHHHHHHHc-CC---ccEEEecCCCH-HHHHHHHHc
Q 022088 98 DALNHLTDLKEE-GK---IKTVALTNFDT-ERLRIILEN 131 (303)
Q Consensus 98 ~~~~al~~l~~~-G~---ir~iGvS~~~~-~~l~~~~~~ 131 (303)
.++++++-+.+. |. -|+|-||+.+. ..++++.+.
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~ 224 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANE 224 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhc
Confidence 899999999765 32 47888998775 467777654
No 203
>PHA01976 helix-turn-helix protein
Probab=25.52 E-value=53 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHH
Q 022088 219 QTLKRIASKHGVSIPVVAVRY 239 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~ 239 (303)
+.++.+.++.|+|..++|-..
T Consensus 5 ~rl~~~R~~~glt~~~lA~~~ 25 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRRA 25 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 556666677777777766553
No 204
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.49 E-value=1.4e+02 Score=22.98 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=33.8
Q ss_pred EEEecC---CCHHHHHHHHHc-----CCCeeeecccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 114 TVALTN---FDTERLRIILEN-----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 114 ~iGvS~---~~~~~l~~~~~~-----~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
.+||.. .+.+.+.+.+.. ++.+..+-.--++-....+..+++.+++.|+.+..|++
T Consensus 5 ~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 5 ALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEeCH
Confidence 455542 455555554432 44444444444443334467899999999999998865
No 205
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=25.46 E-value=2e+02 Score=25.72 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC--------C--CCHHHHHHHHHHHhcC
Q 022088 219 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--------S--LDEDDVNSIQEVTKKG 287 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~--------~--L~~e~~~~i~~~~~~~ 287 (303)
+..+++++++|....=--+.=++..+.|..|++.+. +..|.+-.++++.. | +|.+|.++|-++.++.
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 678889999998622223556888888888888888 77777777776642 4 6789999998888775
No 206
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.18 E-value=5.7e+02 Score=23.91 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=60.4
Q ss_pred EEEecCCCC-----C-----CcHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHHc--CC---Ceeeecccc
Q 022088 84 LQFHWWDYS-----N-----PGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILEN--GI---PVVSNQVQH 142 (303)
Q Consensus 84 ~~lH~~~~~-----~-----~~~~~~~~al~~l~-~~G~---ir~iGvS--~~~~~~l~~~~~~--~~---~~~~~q~~~ 142 (303)
+-||.++.. . ..++++++++.+.. +.|+ |.|+=+. |.+.++++++.+. +. +..++-++|
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy 321 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL 321 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc
Confidence 667887532 1 22678899987776 4465 5666555 5666666666554 34 578999999
Q ss_pred cccccC----h----hhhHHHHHHHhCCeEEeeccccc
Q 022088 143 SVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 143 n~l~~~----~----~~~~~~~~~~~gi~via~spl~~ 172 (303)
|++... + -..+.+..+++||.+..+...+.
T Consensus 322 Np~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 322 NPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 997531 1 13577778899999998877655
No 207
>PRK06361 hypothetical protein; Provisional
Probab=25.18 E-value=4e+02 Score=22.15 Aligned_cols=176 Identities=12% Similarity=0.120 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCceeehH---h-----HHHHHH---HhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCC
Q 022088 11 LPLLTWLIYMGLLKISMA---S-----SSIEFV---ERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 79 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~DtA---~-----~y~~~~---~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d 79 (303)
-++++.|.+.|+..+=.. + .|...+ .........=+++...-+.. ..++. ...+.+.+.+++
T Consensus 13 ~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~----~~~~~-~~~~~~~~~~~~-- 85 (212)
T PRK06361 13 SELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH----VPPKL-IPKLAKKARDLG-- 85 (212)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc----cCchh-hchHHHHHHHCC--
Confidence 478999999999887442 1 111111 11000000113444444431 12233 333445666665
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHH
Q 022088 80 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQ 158 (303)
Q Consensus 80 ~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~ 158 (303)
.|+..+|......+ .. ...-.++.+.|.+.-+|=-.. ..+.++.+.+.+..+.++-. . ..+.....+++.++
T Consensus 86 -~~~~svH~~~~~~~-~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~-~--~~~~~~~~~l~~a~ 158 (212)
T PRK06361 86 -AEIVVVHGETIVEP-VE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR-K--GHSLTNGHVARIAR 158 (212)
T ss_pred -CEEEEECCCCcchh-hh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC-C--CcccchHHHHHHHH
Confidence 45568995432222 11 111145778888877764432 33444444444544444321 1 12233457999999
Q ss_pred HhCCeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022088 159 LTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVR 238 (303)
Q Consensus 159 ~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlal~ 238 (303)
+.|+.++.-|.-.. | +.+. ..+.+..++++.|.+..++---
T Consensus 159 ~~gi~vv~~SDaH~--------------~------------------------~d~~-~~~~~~~i~~~~gl~~~~v~~~ 199 (212)
T PRK06361 159 EAGAPLVINTDTHA--------------P------------------------SDLI-TYEFARKVALGAGLTEKELEEA 199 (212)
T ss_pred HhCCcEEEECCCCC--------------H------------------------HHHH-HHHHHHHHHcCCCCCHHHHHHH
Confidence 99999876654421 0 1111 2477888888888888776543
Q ss_pred H
Q 022088 239 Y 239 (303)
Q Consensus 239 ~ 239 (303)
+
T Consensus 200 ~ 200 (212)
T PRK06361 200 L 200 (212)
T ss_pred H
Confidence 3
No 208
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=25.16 E-value=3e+02 Score=20.94 Aligned_cols=64 Identities=6% Similarity=-0.217 Sum_probs=41.8
Q ss_pred CccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 43 WIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 43 ~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~---d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
.|=.+.|+-|+|.. ..+..++.-+.++.+.+.- ..-|++++..+.....++.++.+.|..+.+.
T Consensus 43 ~R~G~~VsKKvG~A---V~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 43 PRVGLIIAKSVGSA---VERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred CEEEEEEeeecCch---hHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 35578888888753 3456666666666665532 2346666688766666677777788777654
No 209
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=24.97 E-value=6.6e+02 Score=24.56 Aligned_cols=94 Identities=9% Similarity=-0.055 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccc
Q 022088 63 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 142 (303)
Q Consensus 63 ~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~ 142 (303)
+.+.+..++. .+-|-|.||+=.--. .+..+.+...++.+++... .-+.|-+++++.++++++.|..+ +|-+
T Consensus 165 ~~i~~~A~~~-~~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~-~pISIDT~~~~v~eaAL~aGAdi-INsV-- 235 (499)
T TIGR00284 165 DGIEGLAARM-ERDGADMVALGTGSF----DDDPDVVKEKVKTALDALD-SPVIADTPTLDELYEALKAGASG-VIMP-- 235 (499)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCC-CcEEEeCCCHHHHHHHHHcCCCE-EEEC--
Confidence 4444444433 366888888753221 1223456677777776633 34888899999999999886442 2211
Q ss_pred cccccChhhhHHHHHHHhCCeEEeec
Q 022088 143 SVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 143 n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
+-. ...++++.+++.|..++.+.
T Consensus 236 s~~---~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DVE---NAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Ccc---chhHHHHHHHHcCCeEEEEc
Confidence 111 12367888888888887763
No 210
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.88 E-value=3.7e+02 Score=25.52 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEeecccccc
Q 022088 98 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 98 ~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~-~~~~~~~~~~~~gi~via~spl~~G 173 (303)
.++..+....+.-.++-.-+...+++.+++++....+..++..+.|+.-.- .-.++.+.|+++|+.++.=..++.+
T Consensus 115 ~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 115 GTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred hHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 344444433222223444444456777777765445556666555653222 2357899999999999877776544
No 211
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.88 E-value=3e+02 Score=24.37 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCC--CCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeee
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 138 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~--~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~ 138 (303)
+.+ -+..+-+.|.++|+++|++=..-.|. +...+.+++...+.. ...++..++. .+...++.+++.+.+...+
T Consensus 18 s~e-~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g~~~i~i 92 (274)
T cd07938 18 PTE-DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAGVDEVAV 92 (274)
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcCcCEEEE
Confidence 444 45556667999999999996332232 222233455555443 2346677775 5677888888875432222
Q ss_pred ccccccc------ccCh------hhhHHHHHHHhCCeEEee
Q 022088 139 QVQHSVV------DMRP------QQKMAELCQLTGVKLITY 167 (303)
Q Consensus 139 q~~~n~l------~~~~------~~~~~~~~~~~gi~via~ 167 (303)
-...|-. ++.. -.+.+++++++|+.+...
T Consensus 93 ~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~ 133 (274)
T cd07938 93 FVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGY 133 (274)
T ss_pred EEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2222211 1111 235688999999888643
No 212
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=24.82 E-value=2.3e+02 Score=22.53 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCe
Q 022088 58 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPV 135 (303)
Q Consensus 58 ~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~ 135 (303)
+..|.+.+.+.+++--+.+|. .++.+|-.. ..+.++.+.+..+ +|.|-.=|--+|+.-.++.++.. +..
T Consensus 22 G~~tl~~i~~~l~~~a~~~g~-~v~~~QSN~-------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~-~~~ 92 (140)
T cd00466 22 GTTTLADIEALLRELAAELGV-EVEFFQSNH-------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA-VSI 92 (140)
T ss_pred CcCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc-CCC
Confidence 355889999999999999997 467776542 3577788887754 34555556666777778888776 556
Q ss_pred eeecccccccc
Q 022088 136 VSNQVQHSVVD 146 (303)
Q Consensus 136 ~~~q~~~n~l~ 146 (303)
-++.++.|-..
T Consensus 93 P~VEVHiSNi~ 103 (140)
T cd00466 93 PVIEVHISNIH 103 (140)
T ss_pred CEEEEecCCcc
Confidence 66777777664
No 213
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.56 E-value=76 Score=23.37 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC-------CCCHHHHHHHHHHHh
Q 022088 214 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML-------SLDEDDVNSIQEVTK 285 (303)
Q Consensus 214 ~~~~~~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~-------~L~~e~~~~i~~~~~ 285 (303)
+...++++..+++..|..+..... ..+.+|. +...+|.- +.++|.+.+...+. .||+.+...|++.+.
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~-q~~~~~~-p~~~iG~G--K~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVV-QKRRKPD-PKTYIGSG--KVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEE-ecCCCCC-cceeechh--HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 445578999999998876543111 1223343 44577988 99999998876533 799999999999873
No 214
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.44 E-value=3.4e+02 Score=25.12 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCCeEEeecccccccc
Q 022088 98 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 98 ~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~-~~~~~~~~~~~~gi~via~spl~~G~L 175 (303)
.+...+..+.+.--++..-+...+++.+++++..+.+..++..+.|+.-.- .-+++.+.|+++|+.++.=...+.|..
T Consensus 97 ~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 97 GTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 333444443333234444444456777777765445667777777765322 235789999999999998777655543
No 215
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.32 E-value=1.8e+02 Score=21.88 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCccEEEecCC---CHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCCeEEe
Q 022088 110 GKIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 110 G~ir~iGvS~~---~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via 166 (303)
+.+-.+=+..- .++.++++.+.+.+-..+|.. ..++++.+.|+++|+.++.
T Consensus 54 ~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEEE
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEEe
Confidence 44544444432 223344444445555555544 3356799999999999884
No 216
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.29 E-value=2.6e+02 Score=24.33 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.0
Q ss_pred hhHHHHHHHhCCeEEee
Q 022088 151 QKMAELCQLTGVKLITY 167 (303)
Q Consensus 151 ~~~~~~~~~~gi~via~ 167 (303)
...++.|++.|+.++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 46888899999998865
No 217
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=24.24 E-value=3.7e+02 Score=25.75 Aligned_cols=97 Identities=12% Similarity=-0.085 Sum_probs=52.9
Q ss_pred cCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHH
Q 022088 20 MGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 99 (303)
Q Consensus 20 ~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~ 99 (303)
.|+-|+-.|...+-.|+-.+...- ++++=---.- +.. +......++.++|+.||.++ |= +-......+--
T Consensus 9 TG~LHiG~artAL~n~l~Ar~~gG--~fiLRiEDTD-~~R-~~~e~~~~I~~~L~WlGl~w-De-----~y~QSeR~~~Y 78 (433)
T PRK12410 9 TGDMHIGNLRAAIFNYIVAKQQNE--DFLIRIEDTD-KER-NIEGKDKEILEILNLFGISW-DK-----LVYQSENLKFH 78 (433)
T ss_pred CCcccHHHHHHHHHHHHHHHHcCC--EEEEEeCcCC-CCc-CChHHHHHHHHHHHHcCCCC-CC-----CeehhccHHHH
Confidence 366677777666665543331100 2222211111 112 33556789999999999987 52 11222224444
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 022088 100 LNHLTDLKEEGKIKTVALTNFDTERLRIIL 129 (303)
Q Consensus 100 ~~al~~l~~~G~ir~iGvS~~~~~~l~~~~ 129 (303)
.+.+++|.++|++ |.. -++.+++++..
T Consensus 79 ~~~a~~Li~~G~A-Y~C--~cs~eel~~~r 105 (433)
T PRK12410 79 RQMAEKLLSEKKA-FAC--FCSEEELEAKK 105 (433)
T ss_pred HHHHHHHHHcCCe-eee--cCCHHHHHHHH
Confidence 5788899999985 333 33555555443
No 218
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.17 E-value=3.4e+02 Score=22.75 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=52.0
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeeccccc-ccccChhhhHHHHH
Q 022088 79 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 157 (303)
Q Consensus 79 d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n-~l~~~~~~~~~~~~ 157 (303)
.-..+..+.+.. .. +...+|.+.|- ..+-+.-.+.+.+.+++. |....++-+... .-.......+++.|
T Consensus 21 ~~~~V~~l~R~~-----~~---~~~~~l~~~g~-~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP-----SS---DRAQQLQALGA-EVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS-----HH---HHHHHHHHTTT-EEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-----ch---hhhhhhhcccc-eEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 445777777753 12 23455666776 355666667788888877 455444444433 22122356799999
Q ss_pred HHhCCeEEeecccccc
Q 022088 158 QLTGVKLITYGTVMGG 173 (303)
Q Consensus 158 ~~~gi~via~spl~~G 173 (303)
++.||..+.+|-++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999888665
No 219
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=24.09 E-value=1.6e+02 Score=22.28 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 022088 66 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 110 (303)
Q Consensus 66 ~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G 110 (303)
+..+++-|+.+.....|.+++...+.......+....++.|...|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 444444444444455666666665554444445555555555443
No 220
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=4e+02 Score=25.53 Aligned_cols=76 Identities=16% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCC---------ccEEEecC----CCHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHh-
Q 022088 96 YLDALNHLTDLKEEGK---------IKTVALTN----FDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLT- 160 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~---------ir~iGvS~----~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~-~~~~~~~~~~~- 160 (303)
.+++++..++|.++|. +-++|... ++...|.+.+.. + +....++++..++.. ..++++..++.
T Consensus 175 ~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I-~G~~riR~~~~~P~~~~d~lI~~~~~~~ 252 (437)
T COG0621 175 PEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-I-PGIERIRFGSSHPLEFTDDLIEAIAETP 252 (437)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-C-CCceEEEEecCCchhcCHHHHHHHhcCC
Confidence 6799999999999996 44555553 223333333322 2 123455666665533 46799988885
Q ss_pred CCeEEeecccccc
Q 022088 161 GVKLITYGTVMGG 173 (303)
Q Consensus 161 gi~via~spl~~G 173 (303)
.+--.-+-|+.+|
T Consensus 253 kv~~~lHlPvQsG 265 (437)
T COG0621 253 KVCPHLHLPVQSG 265 (437)
T ss_pred cccccccCccccC
Confidence 5555556677666
No 221
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=24.07 E-value=74 Score=21.29 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCHHHHH
Q 022088 220 TLKRIASKHGVSIPVVA 236 (303)
Q Consensus 220 ~l~~ia~~~g~s~~qla 236 (303)
.+++||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 78999999999988864
No 222
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=24.05 E-value=5.8e+02 Score=23.64 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccCh-hhhHHHHHHHhCCeEEeeccccccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~-~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
+...+..+..+...+.+.-.-+...+.+.+++++..+.+..++..+.|+.-.-. -+++.+.|+++|+.++.=...+.|.
T Consensus 100 y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 100 YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 344555555655555555555555667777777654455666666666643222 3578999999999998877765553
No 223
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.04 E-value=23 Score=22.42 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=7.2
Q ss_pred CHhHHHHhHhhhc
Q 022088 257 LAEHIQDTNAIFM 269 (303)
Q Consensus 257 ~~~~l~en~~a~~ 269 (303)
+.+.+....++++
T Consensus 37 ~~~~~~~ia~~l~ 49 (55)
T PF01381_consen 37 SLDTLKKIAKALG 49 (55)
T ss_dssp BHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC
Confidence 4555555555554
No 224
>PRK15108 biotin synthase; Provisional
Probab=24.02 E-value=5.7e+02 Score=23.47 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCC---
Q 022088 60 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIP--- 134 (303)
Q Consensus 60 ~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~~~--- 134 (303)
.+++.+.+.+.. .+.+|...+ .....+..+....++.+.+.++.+++.|. .+.+|+ .+.+.++++.+.|..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 588888888875 567898887 33333322322335677777788887764 344554 678888888877543
Q ss_pred --eeeeccccccccc--Chh--hhHHHHHHHhCCeEEeecccccc
Q 022088 135 --VVSNQVQHSVVDM--RPQ--QKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 135 --~~~~q~~~n~l~~--~~~--~~~~~~~~~~gi~via~spl~~G 173 (303)
+++..-.|.-+.. ..+ -+.++.+++.|+.+-+...++.|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 2222222222211 111 25677888888866555445444
No 225
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.73 E-value=1.5e+02 Score=27.97 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=33.2
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 115 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~i 115 (303)
..+-.|-+|.. . .++++..++|.-.-.+.+.+|--.. . =++||+|.++|.+..+
T Consensus 186 p~I~iTmfGvT------T---p~V~~~~~~Le~~G~Ev~VFHAtG~--G-----G~aME~Li~~G~~~~V 239 (403)
T PF06792_consen 186 PLIGITMFGVT------T---PCVDAIRERLEEEGYEVLVFHATGT--G-----GRAMERLIREGQFDGV 239 (403)
T ss_pred cEEEEECCCCc------H---HHHHHHHHHHHhcCCeEEEEcCCCC--c-----hHHHHHHHHcCCcEEE
Confidence 45555666543 1 2334444444444568999997421 2 1689999999998765
No 226
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=23.58 E-value=48 Score=31.75 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=29.3
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCeeeecccccccccChhhhHHHHHHHhCC
Q 022088 110 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 162 (303)
Q Consensus 110 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi 162 (303)
+.+|++|+..++.+.+.++......-+.++....++-...+.++++.+++.||
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi 316 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGI 316 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCC
Confidence 56788998888777777766541122333333344322223345555555554
No 227
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=23.53 E-value=2.2e+02 Score=26.13 Aligned_cols=211 Identities=14% Similarity=0.153 Sum_probs=97.1
Q ss_pred HhcHHHHHHHHHcCCceeehHhHHHH--HHHhccCCCCccceEEEccccCCC---CCCCHHHHHHHHHHHHhhcCCCccc
Q 022088 8 MLDLPLLTWLIYMGLLKISMASSSIE--FVERGHQSSWIRSEGDLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLD 82 (303)
Q Consensus 8 ~~~~~lv~~Al~~Gi~~~DtA~~y~~--~~~~~~~~~~r~~~~I~tK~~~~~---~~~~~~~i~~sve~SL~~Lg~d~iD 82 (303)
+.|++-+..-.++|+.+.|..+.--. +.++... . =.|--+++..| +..+.+.+.+-.++. +.+|.+-+
T Consensus 3 GaDiS~~~~~E~~G~~f~~~~G~~~d~~~ilk~~G-~----N~vRlRvwv~P~~~g~~~~~~~~~~akra-k~~Gm~vl- 75 (332)
T PF07745_consen 3 GADISSLPEMEAAGVKFYDENGQEKDLFQILKDHG-V----NAVRLRVWVNPYDGGYNDLEDVIALAKRA-KAAGMKVL- 75 (332)
T ss_dssp EEE-TTHHHHHHTT---B-TTSSB--HHHHHHHTT-------EEEEEE-SS-TTTTTTSHHHHHHHHHHH-HHTT-EEE-
T ss_pred ceeHHHHHHHHHcCCeEECCCCCCCCHHHHHHhcC-C----CeEEEEeccCCcccccCCHHHHHHHHHHH-HHCCCeEE-
Confidence 56888888999999999887665422 3455442 1 23444555332 234667666666543 55665422
Q ss_pred EEEEecC----CCCCCcHHHHHHH--HHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeeccccc----ccccCh---
Q 022088 83 MLQFHWW----DYSNPGYLDALNH--LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS----VVDMRP--- 149 (303)
Q Consensus 83 l~~lH~~----~~~~~~~~~~~~a--l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n----~l~~~~--- 149 (303)
+-+|.. |+........|+. +.+|++. |.+|+.+.+.++...|+.|++||+--- ++.+..
T Consensus 76 -ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~ 147 (332)
T PF07745_consen 76 -LDFHYSDFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPS 147 (332)
T ss_dssp -EEE-SSSS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT
T ss_pred -EeecccCCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCcc
Confidence 334543 3332223334433 2444443 567888888888888889999987543 333111
Q ss_pred --------hhhHHHHHHHhC--CeEEeeccccccccCCcccCCCCCCCCCCCCCCCchhHH-HHhhhh----------cc
Q 022088 150 --------QQKMAELCQLTG--VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQK-YKRMVD----------AW 208 (303)
Q Consensus 150 --------~~~~~~~~~~~g--i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~ 208 (303)
-...++.+++.+ +.++.+-. .|.- .....+ +..+.. .+
T Consensus 148 ~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~--~~~~-------------------~~~~~~~f~~l~~~g~d~DviGlSy 206 (332)
T PF07745_consen 148 NWDNLAKLLNAGIKAVREVDPNIKVMLHLA--NGGD-------------------NDLYRWFFDNLKAAGVDFDVIGLSY 206 (332)
T ss_dssp -HHHHHHHHHHHHHHHHTHSSTSEEEEEES---TTS-------------------HHHHHHHHHHHHHTTGG-SEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEC--CCCc-------------------hHHHHHHHHHHHhcCCCcceEEEec
Confidence 122345555554 55555432 2210 000011 111100 00
Q ss_pred CC-c-hhHHHHHHHHHHHHHHhCCC--HHHHHHHHHhhCCCCceeeeccC
Q 022088 209 GG-W-SQFQVLLQTLKRIASKHGVS--IPVVAVRYILDQPAVAGSMIGVR 254 (303)
Q Consensus 209 ~~-~-~~~~~~~~~l~~ia~~~g~s--~~qlal~~~l~~~~v~~vi~G~~ 254 (303)
.+ + ..+..+...++.++++++.. .++.+..|.+..+.-..-+.+..
T Consensus 207 YP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~ 256 (332)
T PF07745_consen 207 YPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGAT 256 (332)
T ss_dssp -STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSS
T ss_pred CCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccc
Confidence 00 1 13566778999999999875 37778888877665544444444
No 228
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=23.48 E-value=4.8e+02 Score=24.24 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeecccccccc
Q 022088 97 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGLL 175 (303)
Q Consensus 97 ~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G~L 175 (303)
......+..+...+-+.-.-+...+.+.+++++....+..++..+.|+.-. ...+++.+.|+++|+.++.=...+.|.+
T Consensus 102 ~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~ 181 (386)
T PRK08045 102 GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL 181 (386)
T ss_pred HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 344555555554443333333445677777766544566666667666422 2245799999999999988777666543
No 229
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=23.48 E-value=2.7e+02 Score=19.62 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeeeecccccccccChhhhHHHHHHHhCCeEEeec
Q 022088 103 LTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 103 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~s 168 (303)
++++++.|++.. +..+...++.. ..+..++--..+. .....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~~------G~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIVI------GTKQTVKALKRGSVKEVVVAEDADP---RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEEE------cHHHHHHHHHcCCeeEEEEECCCCH---HHHHHHHHHHHHcCCCEEEEC
Confidence 456677776432 44566566554 2344444443333 234568888999999887654
No 230
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=23.33 E-value=4.4e+02 Score=21.92 Aligned_cols=142 Identities=7% Similarity=-0.058 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCceeehHhHHHHHHHhccC-CCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCc---ccEEEEe
Q 022088 12 PLLTWLIYMGLLKISMASSSIEFVERGHQ-SSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPC---LDMLQFH 87 (303)
Q Consensus 12 ~lv~~Al~~Gi~~~DtA~~y~~~~~~~~~-~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~---iDl~~lH 87 (303)
+++..|++.|+...|.....+...+..-+ ...+++++++--. +..+.++..+..-...+.... ---+++.
T Consensus 15 ~~v~~~l~~g~~~~~i~~~~l~p~m~~vG~~w~~~~i~va~e~------~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~ 88 (201)
T cd02070 15 ELVKKALEAGIDPQDIIEEGLAPGMDIVGDKYEEGEIFVPELL------MAADAMKAGLDLLKPLLGKSKSAKKGKVVIG 88 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCeeHHHHH------HHHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Confidence 67888999998877765444333221111 0011123332211 122333333333333333221 1123344
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeeeecccccccccC-hhhhHHHHHHHhCC
Q 022088 88 WWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGV 162 (303)
Q Consensus 88 ~~~~~~~~~~~~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~~-~~~~~~~~~~~~gi 162 (303)
.+..+.-+ -+..-.-.-++..|. |.++| .+.+++.+.+.+.. .+|+++-+.++.-... .-.++++..++.+.
T Consensus 89 ~~~gd~H~-lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 89 TVEGDIHD-IGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred ecCCccch-HHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHHHHHHCCC
Confidence 33222221 122222334556666 46667 44455555555554 3455555555433221 13457777777753
No 231
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=23.08 E-value=3.6e+02 Score=25.69 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCC-ccEEEecCCCHHHH---HHHHHcCCCee---eecccccccccChhhhHHHHHHHhCCeEEeeccc
Q 022088 98 DALNHLTDLKEEGK-IKTVALTNFDTERL---RIILENGIPVV---SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 170 (303)
Q Consensus 98 ~~~~al~~l~~~G~-ir~iGvS~~~~~~l---~~~~~~~~~~~---~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl 170 (303)
-+....+.++++|. ++++.|.+.....+ +++++...+.. .+..+-..+ .+=+++...|++.||.+++-..-
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~--~Pv~EI~~icr~~~v~v~~DaAQ 220 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVL--QPVKEIVKICREEGVQVHVDAAQ 220 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccc--ccHHHHHHHhCcCCcEEEeehhh
Confidence 45566777888885 77888886554444 44444333333 333333333 33468899999999988776655
Q ss_pred ccccc
Q 022088 171 MGGLL 175 (303)
Q Consensus 171 ~~G~L 175 (303)
+=|..
T Consensus 221 avG~i 225 (428)
T KOG1549|consen 221 AVGKI 225 (428)
T ss_pred hcCCc
Confidence 55543
No 232
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=22.82 E-value=4.1e+02 Score=21.38 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=46.6
Q ss_pred ceEEEc-cccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH---HcCCccEEEecC--
Q 022088 46 SEGDLT-KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK---EEGKIKTVALTN-- 119 (303)
Q Consensus 46 ~~~I~t-K~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~---~~G~ir~iGvS~-- 119 (303)
.+.|+| |-....+..+.+.+...++..|+.+|.+...++.-|......|.-+-...+++++. +...+-+||=+.
T Consensus 60 ~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~ 139 (166)
T TIGR01664 60 KIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGR 139 (166)
T ss_pred EEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCC
Confidence 566666 43323334466677778899999999976333333322122232122334444442 334567777332
Q ss_pred ---CCHHHHHHHHHcCCC
Q 022088 120 ---FDTERLRIILENGIP 134 (303)
Q Consensus 120 ---~~~~~l~~~~~~~~~ 134 (303)
+....++.+...|++
T Consensus 140 ~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 140 KLDFSDADIKFAKNLGLE 157 (166)
T ss_pred CCCCchhHHHHHHHCCCC
Confidence 123566666655544
No 233
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.81 E-value=5.6e+02 Score=23.74 Aligned_cols=89 Identities=9% Similarity=0.089 Sum_probs=58.7
Q ss_pred CccceEEEccccCC-------------CCCCCHHHHHHHHHHHHhhcCCC---cccEEEEecCCCCCCcHHHHHHHHHHH
Q 022088 43 WIRSEGDLTKWVPP-------------PVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDL 106 (303)
Q Consensus 43 ~r~~~~I~tK~~~~-------------~~~~~~~~i~~sve~SL~~Lg~d---~iDl~~lH~~~~~~~~~~~~~~al~~l 106 (303)
+|..+-|+|-+|=+ ..+.+...|..++....+++|.. .+.=+.+-........++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 34467888887721 13779999999999999999975 233333333322223367788888877
Q ss_pred HH-cCC---ccEEEecCCC-HHHHHHHHHc
Q 022088 107 KE-EGK---IKTVALTNFD-TERLRIILEN 131 (303)
Q Consensus 107 ~~-~G~---ir~iGvS~~~-~~~l~~~~~~ 131 (303)
.+ .|. .|++-||+.+ ...+.++...
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~ 208 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLADE 208 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHhh
Confidence 73 332 2889999877 4667777643
No 234
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=22.43 E-value=2.2e+02 Score=21.91 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhh
Q 022088 229 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 268 (303)
Q Consensus 229 g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~ 268 (303)
..|=.+.||.++...+.-..++.|+.-.+.+|.-.|+..+
T Consensus 69 D~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l 108 (123)
T PF04263_consen 69 DYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLL 108 (123)
T ss_dssp TS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHH
Confidence 4567789999999998888888999988899999888765
No 235
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=22.29 E-value=1.6e+02 Score=21.77 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=25.1
Q ss_pred HHHHHHHHHH---HcCCccEEEecCCCHHHHHHHHHc
Q 022088 98 DALNHLTDLK---EEGKIKTVALTNFDTERLRIILEN 131 (303)
Q Consensus 98 ~~~~al~~l~---~~G~ir~iGvS~~~~~~l~~~~~~ 131 (303)
..+..|.++. ++..+..+|||+.+.+.++++.+.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 4455555555 345789999999999988888875
No 236
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.21 E-value=6.1e+02 Score=23.23 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 022088 55 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 134 (303)
Q Consensus 55 ~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 134 (303)
+..+.++.+...+-.+-+.+-.|+++|=|=.+.......++..+++++.++|+++|..-. =+++.++...+++.+.+
T Consensus 142 NTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g-- 218 (326)
T PRK11840 142 NTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG-- 218 (326)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC--
Confidence 444577889888888888898999999988888777777778899999999999998653 36777888888887763
Q ss_pred eeeecccccccccCh---hhh-HHHHHHHhCCeEEeeccc
Q 022088 135 VVSNQVQHSVVDMRP---QQK-MAELCQLTGVKLITYGTV 170 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~---~~~-~~~~~~~~gi~via~spl 170 (303)
+.+++.-=+++-... ..+ +-..+...++.++.-.-+
T Consensus 219 ~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGI 258 (326)
T PRK11840 219 AVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGV 258 (326)
T ss_pred CEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCC
Confidence 344444222221110 122 333344456777755433
No 237
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.21 E-value=5.9e+02 Score=23.05 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=55.3
Q ss_pred ccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 022088 44 IRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 123 (303)
Q Consensus 44 r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~ 123 (303)
++.+.++.|....++ ...+...+++..+++|. ++.+ ..+... +.....+.++.+..+| +..|-++..++.
T Consensus 23 ~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~--d~~~q~~~i~~li~~~-vdgIiv~~~d~~ 92 (336)
T PRK15408 23 AERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTEP--SVSGQVQLINNFVNQG-YNAIIVSAVSPD 92 (336)
T ss_pred CcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCCC--CHHHHHHHHHHHHHcC-CCEEEEecCCHH
Confidence 337888888764322 36788899999999994 4443 333222 2355668888998875 889988876654
Q ss_pred ----HHHHHHHcCCCeeee
Q 022088 124 ----RLRIILENGIPVVSN 138 (303)
Q Consensus 124 ----~l~~~~~~~~~~~~~ 138 (303)
.++++.+.++|+..+
T Consensus 93 al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 93 GLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHHCCCeEEEe
Confidence 444555556664443
No 238
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.19 E-value=4.6e+02 Score=21.79 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHH---HHHHHHHc-CCCeeeeccc
Q 022088 67 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTE---RLRIILEN-GIPVVSNQVQ 141 (303)
Q Consensus 67 ~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~-~~~~---~l~~~~~~-~~~~~~~q~~ 141 (303)
+.++...+.||+.. +.+.-+........+..+.|.+++++| +.++-... .+.. .++..... +. ..
T Consensus 48 e~~~~~A~~lgipl---~~i~~~~~~e~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~~~~~~gl------~~ 117 (194)
T cd01994 48 ELLELQAEAMGIPL---IRIEISGEEEDEVEDLKELLRKLKEEG-VDAVVFGAILSEYQRTRVERVCERLGL------EP 117 (194)
T ss_pred HHHHHHHHHcCCcE---EEEeCCCCchHHHHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCC------EE
Confidence 45566678888754 333322222222356677888888874 66665443 2222 23333332 33 33
Q ss_pred ccccccChhhhHHHHHHHhCCeEEeecccccc
Q 022088 142 HSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 173 (303)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~~gi~via~spl~~G 173 (303)
+.|+.....++++...-+.|+..+.-+.-+.|
T Consensus 118 ~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~ 149 (194)
T cd01994 118 LAPLWGRDQEELLREMIEAGFKAIIIKVAAEG 149 (194)
T ss_pred EecccCCCHHHHHHHHHHcCCeEEEEEeccCC
Confidence 45666666678999999999987776665665
No 239
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=22.16 E-value=8.1e+02 Score=24.60 Aligned_cols=62 Identities=10% Similarity=-0.073 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhhcCCCccc-EEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 022088 61 TSSIVRESIDVSRRRMDVPCLD-MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 131 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iD-l~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 131 (303)
.......++.+.|+.||.++=. .++ ....++.-.+.+++|.++|+. + ++..+.+++++....
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~~------QSdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~r~~ 161 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPTY------SSDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKCRFD 161 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCceee------ccccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHHHhC
Confidence 4467888999999999987522 221 223366778899999999994 4 788888888766433
No 240
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.05 E-value=3.8e+02 Score=22.52 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH----HHHHHHHHcCCCeeee
Q 022088 63 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 138 (303)
Q Consensus 63 ~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~----~~l~~~~~~~~~~~~~ 138 (303)
..+.+.+++.++.+|.+. .++ .+.... .+...+.++.+.++| +..|=++..++ ..++++.+.++|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 668888999999998733 222 222223 467788999999887 88888776554 5566666667765554
Q ss_pred ccc
Q 022088 139 QVQ 141 (303)
Q Consensus 139 q~~ 141 (303)
-..
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 333
No 241
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=21.96 E-value=3.1e+02 Score=24.04 Aligned_cols=107 Identities=15% Similarity=0.024 Sum_probs=56.2
Q ss_pred hcHHHHHHHHHcCCceeehH-h-HH---HHHHHhccCCCCccceEEEccccCCC-------CCCCHHHHHHHHHHH---H
Q 022088 9 LDLPLLTWLIYMGLLKISMA-S-SS---IEFVERGHQSSWIRSEGDLTKWVPPP-------VKMTSSIVRESIDVS---R 73 (303)
Q Consensus 9 ~~~~lv~~Al~~Gi~~~DtA-~-~y---~~~~~~~~~~~~r~~~~I~tK~~~~~-------~~~~~~~i~~sve~S---L 73 (303)
.+.+++++|++.|..++-.. + .+ .-...+... - .+++...-+.+. +....+.+...+++. +
T Consensus 84 ~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~-~---~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~ 159 (257)
T cd00739 84 FRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYG-A---PLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAA 159 (257)
T ss_pred CCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcC-C---CEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 45788999999997666422 1 11 112222221 1 355544322111 011134455555543 4
Q ss_pred hhcCCC----cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC
Q 022088 74 RRMDVP----CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 121 (303)
Q Consensus 74 ~~Lg~d----~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~ 121 (303)
++.|++ ++|-.. .........-++++.++.+++.|.=-.+|+||-+
T Consensus 160 ~~~Gi~~~~Ii~DPg~--gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 160 ESAGVARNRIILDPGI--GFGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHcCCCHHHEEEecCC--CcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 566776 555422 1111111124678888899988887799999754
No 242
>COG0218 Predicted GTPase [General function prediction only]
Probab=21.87 E-value=4.9e+02 Score=22.00 Aligned_cols=59 Identities=14% Similarity=-0.016 Sum_probs=41.6
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccE--EEEecCCCCCCcHHHHHHHHHHHHHc
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDM--LQFHWWDYSNPGYLDALNHLTDLKEE 109 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl--~~lH~~~~~~~~~~~~~~al~~l~~~ 109 (303)
=++|.||.- ........+.+....++|+.+..|- +.+........ ++++++.+.+...+
T Consensus 138 ~~vv~tK~D----Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~G-i~~l~~~i~~~~~~ 198 (200)
T COG0218 138 VIVVLTKAD----KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKG-IDELKAKILEWLKE 198 (200)
T ss_pred eEEEEEccc----cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccC-HHHHHHHHHHHhhc
Confidence 578999985 3455778888899999998887776 44554434444 67888777776543
No 243
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=21.84 E-value=1.9e+02 Score=23.87 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.9
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC
Q 022088 80 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 119 (303)
Q Consensus 80 ~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~ 119 (303)
.-++++++....... ..+-++.|+.+..+|++|++-+.-
T Consensus 77 sn~l~lv~~~~rNp~-S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 77 SNDLLLVSPAIRNPT-SDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred hCceeccChhhcCch-HHHHHHHHHHHhcCCceEEeeeee
Confidence 346677876544444 578889999999999999985443
No 244
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.79 E-value=1.1e+02 Score=18.76 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 022088 220 TLKRIASKHGVSIPVVAVRYILD 242 (303)
Q Consensus 220 ~l~~ia~~~g~s~~qlal~~~l~ 242 (303)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4667788888877665 777644
No 245
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=21.73 E-value=5.9e+02 Score=22.83 Aligned_cols=73 Identities=7% Similarity=0.102 Sum_probs=47.7
Q ss_pred HHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeeccccccc
Q 022088 101 NHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 101 ~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
+.+..+.+.- .=-+.|=|.++.+++..++..+ -.+++|+.....-- ....++.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4555665553 2335566667788888887752 35666666554311 123578999999999999887776664
No 246
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=21.51 E-value=1.8e+02 Score=24.49 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhh
Q 022088 229 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 268 (303)
Q Consensus 229 g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~ 268 (303)
..|=.++|++|+..++.-..++.|+.-.+.+|.-.|+..+
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHH
Confidence 4677899999999998878889999888899999999865
No 247
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=21.48 E-value=64 Score=22.43 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=25.8
Q ss_pred HHhHhcHHHHHHHHHcCCceeehHhHHHHHHH
Q 022088 5 IMLMLDLPLLTWLIYMGLLKISMASSSIEFVE 36 (303)
Q Consensus 5 ~~~~~~~~lv~~Al~~Gi~~~DtA~~y~~~~~ 36 (303)
+.++||-+++..|-++|||.=.|+...+.+..
T Consensus 5 vnltld~dll~~ar~~giNlS~~~e~~L~~~~ 36 (72)
T PRK13710 5 ITVTVDSDSYQLLKAADVNISGLVNTAMQNEA 36 (72)
T ss_pred eEeeECHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45789999999999999999877766666543
No 248
>PRK06740 histidinol-phosphatase; Validated
Probab=21.38 E-value=6.3e+02 Score=23.04 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCC---CCc-------------HHHHHHHHHHHHHcCCccEEEecC------CCH--
Q 022088 67 ESIDVSRRRMDVPCLDMLQFHWWDYS---NPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT-- 122 (303)
Q Consensus 67 ~sve~SL~~Lg~d~iDl~~lH~~~~~---~~~-------------~~~~~~al~~l~~~G~ir~iGvS~------~~~-- 122 (303)
..+++.|.....||+ +.-+|..+.. .+. +..-.+.+.++.+.|++..||=-. +.+
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 455566767777887 7778975311 111 112346788888999988887332 111
Q ss_pred ----HHHHHHHH----cCCCeeeecc-cc--cccccChhhhHHHHHHHhCCeEE
Q 022088 123 ----ERLRIILE----NGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLI 165 (303)
Q Consensus 123 ----~~l~~~~~----~~~~~~~~q~-~~--n~l~~~~~~~~~~~~~~~gi~vi 165 (303)
..+++++. .+..+.+|-. .+ ..-+..+...+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEE
Confidence 23333322 2666666653 11 11112344578999999998765
No 249
>PRK10508 hypothetical protein; Provisional
Probab=21.37 E-value=1.6e+02 Score=27.00 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE 108 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~ 108 (303)
+|+.|.+.+++-.+++|+|.+ +++... .+ .++.++.++-|.+
T Consensus 287 tpe~V~~kl~~l~~~~g~del---~~~~~~--~~-~e~~~~S~~lla~ 328 (333)
T PRK10508 287 DKAKVRHGLQSILRETQADEI---MVNGQI--FD-HQARLHSFELAMD 328 (333)
T ss_pred CHHHHHHHHHHHHHHHCcCEE---EEECCC--CC-HHHHHHHHHHHHH
Confidence 889999999999999999887 344332 22 4566666665543
No 250
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.33 E-value=6.2e+02 Score=22.94 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=12.2
Q ss_pred HHHHHHHcCCceeehH
Q 022088 13 LLTWLIYMGLLKISMA 28 (303)
Q Consensus 13 lv~~Al~~Gi~~~DtA 28 (303)
-.+.|.++|+..++.-
T Consensus 159 aA~~a~~aGfDgVei~ 174 (336)
T cd02932 159 AARRAVEAGFDVIEIH 174 (336)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 3467788999999873
No 251
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=21.19 E-value=1e+02 Score=30.27 Aligned_cols=72 Identities=10% Similarity=-0.083 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCH---HHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCCccccC
Q 022088 219 QTLKRIASKHGVSI---PVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDLLGVIG 295 (303)
Q Consensus 219 ~~l~~ia~~~g~s~---~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~~~~~~~~~~~~~ 295 (303)
+.+.++.++++++. +-.++|.+++.+. +.-. +...|+-...+ .-||++|.++...+.+.-.-.-.+|..
T Consensus 254 ~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-----~~~~--dlssLr~~~Sa-GEPLnpe~~~w~~~~~g~~i~d~~gqT 325 (528)
T COG0365 254 ERLWEALEKYKVTIFGTSPTFLRRLMKLGL-----GEPY--DLSSLRVLGSA-GEPLNPEAFEWFYSALGVWILDIYGQT 325 (528)
T ss_pred HHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----cccc--cchhheeeecc-CCCCCHHHHHHHHHHhCCCEecccccc
Confidence 67778888888863 5668999999875 1122 33344444433 348999999999999863333346766
Q ss_pred CCc
Q 022088 296 DCG 298 (303)
Q Consensus 296 ~~~ 298 (303)
+||
T Consensus 326 Etg 328 (528)
T COG0365 326 ETG 328 (528)
T ss_pred ccC
Confidence 665
No 252
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=21.16 E-value=2.3e+02 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=35.2
Q ss_pred HhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhc
Q 022088 227 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 269 (303)
Q Consensus 227 ~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~ 269 (303)
+...|=.++|+.|++.++.-..++.|+.-.+.+|.-.|+.-+-
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll~ 116 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLLL 116 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHHH
Confidence 3456789999999999998777888887677899988887653
No 253
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=21.13 E-value=2.8e+02 Score=25.29 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeec
Q 022088 98 DALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 168 (303)
Q Consensus 98 ~~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~s 168 (303)
+-++.+.+|++...+. +.|=|.++...++.+++.+ .++++|+..+..-- ..-.++...|+++|+.++.++
T Consensus 209 ~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 209 DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 3456778888887766 6677778999999998863 47888877654321 123578999999999988654
No 254
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=21.12 E-value=4.8e+02 Score=25.68 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 022088 61 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 128 (303)
Q Consensus 61 ~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~ 128 (303)
.......++.+.|+.||.++ |-. ......++.-.+.+++|.++|++= +|..+.+++++.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~-----~~qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSV-----SFTSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCC-----ccccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHH
Confidence 44678889999999999986 521 122333667778899999999852 345566666544
No 255
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.09 E-value=5.3e+02 Score=25.32 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=52.2
Q ss_pred cCCceeehHhHHHHHHHhccCCCCccceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHH
Q 022088 20 MGLLKISMASSSIEFVERGHQSSWIRSEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 99 (303)
Q Consensus 20 ~Gi~~~DtA~~y~~~~~~~~~~~~r~~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~ 99 (303)
.|+-|+-.|...+-.|+..+...- ++++----. .. .-+.....+++.++|+.||+++ |= .|-......+--
T Consensus 14 TG~lHiG~artAL~n~l~Ar~~gG--~fiLRIEDT-D~-~R~~~~~~~~i~~~L~WLGl~w-De----~py~QSeR~~~Y 84 (513)
T PRK14895 14 TGFLHIGSARTALFNYLFARHHNG--KFLLRIEDT-DK-ERSTKEAVEAIFSGLKWLGLDW-NG----EVIFQSKRNNLY 84 (513)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCC--EEEEEECCC-Cc-cccChHHHHHHHHHHHHcCCCC-CC----CceeEeCcHHHH
Confidence 366677777666655543331100 233221111 11 2244678888999999999987 40 011111223334
Q ss_pred HHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 022088 100 LNHLTDLKEEGKIKTVALTNFDTERLRII 128 (303)
Q Consensus 100 ~~al~~l~~~G~ir~iGvS~~~~~~l~~~ 128 (303)
.+.+++|.++|++ |...| +.+++++.
T Consensus 85 ~~~a~~Li~~G~A-Y~CfC--t~eel~~~ 110 (513)
T PRK14895 85 KEAALKLLQNGKA-YYCFT--RQEEIERQ 110 (513)
T ss_pred HHHHHHHHHcCCe-EEecC--cHHHHHHH
Confidence 4788999999985 33333 55555544
No 256
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.08 E-value=5.6e+02 Score=23.73 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc----CC-
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GI- 133 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~~- 133 (303)
.++++.++.-|++.|.+.|++. .+-..+-+.|...- ..|+.+|....+..+++. ++
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~e-------------e~A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPE-------------EDARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKIN 65 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcC
Confidence 3578999999999999999732 11122333333222 357788888887777654 11
Q ss_pred ---Ceeeeccccccc--ccC----------hhhhHHHHHHHhCCeEEe
Q 022088 134 ---PVVSNQVQHSVV--DMR----------PQQKMAELCQLTGVKLIT 166 (303)
Q Consensus 134 ---~~~~~q~~~n~l--~~~----------~~~~~~~~~~~~gi~via 166 (303)
.+.+++..=... |-. .-+..++.|+++||++++
T Consensus 66 ~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 66 PDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 233332222211 111 125689999999999887
No 257
>smart00642 Aamy Alpha-amylase domain.
Probab=20.80 E-value=1.4e+02 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.8
Q ss_pred hhhHHHHHHHhCCeEEeeccccc
Q 022088 150 QQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 150 ~~~~~~~~~~~gi~via~spl~~ 172 (303)
-+.+++.|+++||.++.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 35799999999999998777644
No 258
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=20.78 E-value=66 Score=25.17 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCceeeh
Q 022088 11 LPLLTWLIYMGLLKISM 27 (303)
Q Consensus 11 ~~lv~~Al~~Gi~~~Dt 27 (303)
..-+..+++.|+|+||.
T Consensus 31 ~~~i~~qL~~GvR~~di 47 (135)
T smart00148 31 VEGYIQALDHGCRCVEL 47 (135)
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 45678999999999996
No 259
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=20.69 E-value=33 Score=22.45 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcC
Q 022088 220 TLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 270 (303)
Q Consensus 220 ~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~ 270 (303)
...++|++.|++..+ .-+|.-... . ..+.+++...+.+++.
T Consensus 12 t~~~La~~~gis~~t-l~~~~~~~~--~-------~~~~~~l~~ia~~l~~ 52 (63)
T PF13443_consen 12 TQKDLARKTGISRST-LSRILNGKP--S-------NPSLDTLEKIAKALNC 52 (63)
T ss_dssp -HHHHHHHHT--HHH-HHHHHTTT--------------HHHHHHHHHHHT-
T ss_pred CHHHHHHHHCcCHHH-HHHHHhccc--c-------cccHHHHHHHHHHcCC
Confidence 345566666666543 223333221 1 1156677777777654
No 260
>PRK10945 gene expression modulator; Provisional
Probab=20.68 E-value=2e+02 Score=19.90 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=25.4
Q ss_pred CHhHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022088 257 LAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 286 (303)
Q Consensus 257 ~~~~l~en~~a~~~~L~~e~~~~i~~~~~~ 286 (303)
+.+-|+..++-..-.|++.|+..+.++.+.
T Consensus 20 s~eTLEkvie~~~~~L~~~E~~~f~~AaDH 49 (72)
T PRK10945 20 TIDTLERVIEKNKYELSDDELAVFYSAADH 49 (72)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 888899988888779999999988887653
No 261
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.67 E-value=1.8e+02 Score=23.33 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCCceeeeccCCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 022088 219 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 283 (303)
Q Consensus 219 ~~l~~ia~~~g~s~~qlal~~~l~~~~v~~vi~G~~~~~~~~l~en~~a~~~~L~~e~~~~i~~~ 283 (303)
+.+.+.-.+.|.|-.++|=+==++.-.+++++-|-.+-++++.+...+.+ .|+++....|...
T Consensus 11 ~~Ll~AK~~KGLTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lL--gL~~e~~~~l~~~ 73 (150)
T TIGR00673 11 DALLESKKKKGLTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKL--DLDEDSILELQMA 73 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CcCHHHHHHHhcC
Confidence 33443344455565555544444444455556666655788888888877 5888888777654
No 262
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.62 E-value=6.9e+02 Score=23.18 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHcCCCeeeeccccccccc-ChhhhHHHHHHHhCCeEEeeccccccc
Q 022088 119 NFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 174 (303)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~~q~~~n~l~~-~~~~~~~~~~~~~gi~via~spl~~G~ 174 (303)
..+.+.+++.+....+..++..+.|+.-. ..-+++.+.|+++|+.++.=...+.|.
T Consensus 133 ~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 133 LSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 34667777766544566666677776432 224578999999999999877776654
No 263
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=20.46 E-value=87 Score=28.92 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=25.0
Q ss_pred eeeecccccccccChhhhHHHHHHHhCCeEEeeccccc
Q 022088 135 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 172 (303)
Q Consensus 135 ~~~~q~~~n~l~~~~~~~~~~~~~~~gi~via~spl~~ 172 (303)
+...|.++..+ ++.+..|+++||.++.+.|-..
T Consensus 244 f~~s~~q~~F~-----e~~L~~ake~~I~~vl~~P~V~ 276 (345)
T PF07611_consen 244 FTFSETQFFFL-----EKFLKLAKENGIPVVLWWPKVS 276 (345)
T ss_pred CCCChhHHHHH-----HHHHHHHHHcCCcEEEEEeccC
Confidence 44445555443 5799999999999999999754
No 264
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=20.46 E-value=4.9e+02 Score=21.90 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeeee----------------------cccccccc---cChhhhHHHH
Q 022088 104 TDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN----------------------QVQHSVVD---MRPQQKMAEL 156 (303)
Q Consensus 104 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~~----------------------q~~~n~l~---~~~~~~~~~~ 156 (303)
+.+++.|....+=+++|+++.+..+.+. .++.... ...+..++ .....++++.
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRL 189 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHH
Confidence 3444557677788899998888877764 1211111 11111110 0012578889
Q ss_pred HHHhCCeEEeecc
Q 022088 157 CQLTGVKLITYGT 169 (303)
Q Consensus 157 ~~~~gi~via~sp 169 (303)
++++|+.+.+|.+
T Consensus 190 ~~~~G~~v~~WTv 202 (226)
T cd08568 190 LRKLGLKIVLWTV 202 (226)
T ss_pred HHHCCCEEEEEcC
Confidence 9999999999953
No 265
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.40 E-value=6.7e+02 Score=22.94 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHHc--CCCeeeecccccccccC---h-h---hhHHHHHHHh
Q 022088 96 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR---P-Q---QKMAELCQLT 160 (303)
Q Consensus 96 ~~~~~~al~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~--~~~~~~~q~~~n~l~~~---~-~---~~~~~~~~~~ 160 (303)
+++++++++++.+. |. ++++-+. |.+.++++++.+. +.+..++-++||++... + + ..+.+..+++
T Consensus 234 l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 234 IEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVPGLEKPSRERIERFKEILLKN 313 (343)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCccCCCCCHHHHHHHHHHHHHC
Confidence 67888988887765 43 4455554 5667777777654 44566777899986422 1 1 2456667778
Q ss_pred CCeEEeeccc
Q 022088 161 GVKLITYGTV 170 (303)
Q Consensus 161 gi~via~spl 170 (303)
|+.+..+...
T Consensus 314 gi~vtvr~~~ 323 (343)
T PRK14469 314 GIEAEIRREK 323 (343)
T ss_pred CCeEEEeCCC
Confidence 9988877544
No 266
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.30 E-value=3.2e+02 Score=22.60 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeeeecccccc
Q 022088 96 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 144 (303)
Q Consensus 96 ~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~q~~~n~ 144 (303)
+..+++.|--.++.||+-++|+-|.+.-.+...++. .+....|.-.||
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKd-Drl~qhvPTlHP 54 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKD-DRLGQHVPTLHP 54 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHcc-ccccccCCCcCC
Confidence 567888888888999999999999999888888876 456666666665
No 267
>PRK10551 phage resistance protein; Provisional
Probab=20.25 E-value=3.6e+02 Score=26.34 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=66.2
Q ss_pred ceEEEccccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH--
Q 022088 46 SEGDLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT-- 122 (303)
Q Consensus 46 ~~~I~tK~~~~~~~~~~~~i~~sve~SL~~Lg~d~iDl~~-lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~-- 122 (303)
+..|+-.+.+. .+....+...+.+.|+.++.+..-+.+ +...... . ..+..+.++.|++.|- .+.+.+|+.
T Consensus 349 ~~~lsINis~~--~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~-~-~~~~~~~l~~Lr~~G~--~ialDDFGtg~ 422 (518)
T PRK10551 349 GAKLGINISPA--HLHSDSFKADVQRLLASLPADHFQIVLEITERDMV-Q-EEEATKLFAWLHSQGI--EIAIDDFGTGH 422 (518)
T ss_pred CcEEEEEeCHH--HHCCchHHHHHHHHHHhCCCCcceEEEEEechHhc-C-CHHHHHHHHHHHHCCC--EEEEECCCCCc
Confidence 34455555543 334466778889999999876543322 3332211 2 2446678899999998 455555432
Q ss_pred HHHHHHHHcCCCeeeecccccccccC--------hhhhHHHHHHHhCCeEEee
Q 022088 123 ERLRIILENGIPVVSNQVQHSVVDMR--------PQQKMAELCQLTGVKLITY 167 (303)
Q Consensus 123 ~~l~~~~~~~~~~~~~q~~~n~l~~~--------~~~~~~~~~~~~gi~via~ 167 (303)
..+..+.. .+++.+-+.-+.+..- .-..++..|++.|+.+++=
T Consensus 423 ssl~~L~~--l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 423 SALIYLER--FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred hhHHHHHh--CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 23333332 3555555554444321 1246899999999988854
No 268
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.23 E-value=2.7e+02 Score=22.31 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCe
Q 022088 58 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPV 135 (303)
Q Consensus 58 ~~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~ 135 (303)
+..|-+.+.+.+++--+.+|. .++.+|=.. ..+.++.+.+..+ +|.|-.=|--+|+.-.++.++.. +..
T Consensus 24 G~~tl~~i~~~~~~~a~~~g~-~v~~~QSN~-------EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~-~~~ 94 (146)
T PRK05395 24 GSTTLADIEALLEEEAAELGV-ELEFFQSNH-------EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAA-VSI 94 (146)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHc-CCC
Confidence 355889999999999999997 366666432 3577788887753 33344445555667777778776 555
Q ss_pred eeeccccccccc
Q 022088 136 VSNQVQHSVVDM 147 (303)
Q Consensus 136 ~~~q~~~n~l~~ 147 (303)
-++.++.|-...
T Consensus 95 P~VEVHiSNi~a 106 (146)
T PRK05395 95 PVIEVHLSNIHA 106 (146)
T ss_pred CEEEEecCCccc
Confidence 577788776643
No 269
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.13 E-value=5.9e+02 Score=22.22 Aligned_cols=104 Identities=15% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCee
Q 022088 59 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVV 136 (303)
Q Consensus 59 ~~~~~~i~~sve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~ 136 (303)
..+++.+.+.+++.++ -|.|+||+=. .|. .....++..+.+..+++.-. .-|.|-+++++.++++++. |.. -
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~-i 95 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC-V 95 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc-E
Confidence 3467888888887775 5999999854 232 22212333333333333212 2477889999999999986 432 2
Q ss_pred eecccccccccChhhhHHHHHHHhCCeEEeecc
Q 022088 137 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 169 (303)
Q Consensus 137 ~~q~~~n~l~~~~~~~~~~~~~~~gi~via~sp 169 (303)
++-+...-.+ .....+++.+++.|..++.+.-
T Consensus 96 INsIs~~~~~-e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 96 VNSINLEDGE-ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EEeCCCCCCc-cccHHHHHHHHHhCCCEEEecc
Confidence 2222221111 1124678899999999888754
Done!