Query 022090
Match_columns 303
No_of_seqs 279 out of 3240
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 2.9E-47 6.3E-52 349.2 19.6 274 8-300 2-300 (531)
2 COG2072 TrkA Predicted flavopr 100.0 8E-39 1.7E-43 289.0 24.9 210 5-227 6-216 (443)
3 PLN02172 flavin-containing mon 100.0 3E-36 6.4E-41 273.3 24.2 202 6-219 9-237 (461)
4 KOG1399 Flavin-containing mono 100.0 3.4E-36 7.5E-41 268.2 20.4 201 6-217 5-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 5.7E-33 1.2E-37 227.6 13.0 191 11-222 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 6.4E-24 1.4E-28 184.2 20.2 174 8-219 1-174 (300)
7 COG1249 Lpd Pyruvate/2-oxoglut 99.9 2.7E-25 5.8E-30 199.4 8.2 275 6-298 3-294 (454)
8 PRK10262 thioredoxin reductase 99.9 2.2E-23 4.8E-28 182.6 19.8 177 4-219 3-179 (321)
9 COG0492 TrxB Thioredoxin reduc 99.9 5.6E-23 1.2E-27 176.1 18.8 173 7-219 3-176 (305)
10 PRK15317 alkyl hydroperoxide r 99.9 7.1E-23 1.5E-27 189.9 20.8 175 6-219 210-384 (517)
11 PRK05249 soluble pyridine nucl 99.9 1.1E-22 2.3E-27 186.8 16.3 208 6-238 4-226 (461)
12 TIGR03143 AhpF_homolog putativ 99.9 3.8E-22 8.3E-27 186.2 20.2 173 7-219 4-176 (555)
13 TIGR01421 gluta_reduc_1 glutat 99.9 5.3E-23 1.1E-27 187.6 13.3 205 7-244 2-223 (450)
14 PF13434 K_oxygenase: L-lysine 99.9 1.9E-22 4.2E-27 176.4 15.0 205 7-228 2-233 (341)
15 PRK14694 putative mercuric red 99.9 2.1E-22 4.6E-27 184.8 16.0 209 5-238 4-228 (468)
16 TIGR03140 AhpF alkyl hydropero 99.9 1.3E-21 2.9E-26 181.2 20.7 175 6-219 211-385 (515)
17 PRK14727 putative mercuric red 99.9 2.5E-22 5.4E-27 184.7 15.4 221 2-243 11-243 (479)
18 PRK06467 dihydrolipoamide dehy 99.9 2.3E-22 4.9E-27 184.5 15.0 209 6-241 3-228 (471)
19 PRK06416 dihydrolipoamide dehy 99.9 3.5E-22 7.7E-27 183.3 15.7 202 6-236 3-221 (462)
20 PRK06370 mercuric reductase; V 99.9 2.8E-22 6E-27 184.0 14.6 203 6-238 4-222 (463)
21 PLN02507 glutathione reductase 99.9 3.4E-22 7.4E-27 184.1 15.1 207 7-240 25-256 (499)
22 PRK08010 pyridine nucleotide-d 99.9 9.4E-22 2E-26 179.5 16.5 199 7-238 3-209 (441)
23 KOG0405 Pyridine nucleotide-di 99.9 4.5E-22 9.8E-27 166.3 12.4 229 3-251 16-253 (478)
24 TIGR02053 MerA mercuric reduct 99.9 2.7E-22 5.8E-27 184.2 11.0 207 8-243 1-222 (463)
25 TIGR01424 gluta_reduc_2 glutat 99.9 5.8E-22 1.3E-26 180.9 13.0 198 7-236 2-215 (446)
26 PRK06116 glutathione reductase 99.9 1.2E-21 2.6E-26 179.2 14.7 198 6-237 3-217 (450)
27 PRK07251 pyridine nucleotide-d 99.9 3.2E-21 6.8E-26 175.9 16.9 191 7-236 3-206 (438)
28 PRK05976 dihydrolipoamide dehy 99.9 1.4E-21 3.1E-26 179.6 14.3 211 6-240 3-233 (472)
29 PRK13748 putative mercuric red 99.9 3.4E-21 7.3E-26 181.0 15.8 209 6-240 97-322 (561)
30 PTZ00058 glutathione reductase 99.9 4.7E-21 1E-25 177.5 16.1 213 6-243 47-293 (561)
31 PRK06292 dihydrolipoamide dehy 99.9 2.8E-21 6E-26 177.4 13.8 212 7-241 3-223 (460)
32 PTZ00052 thioredoxin reductase 99.9 1.3E-21 2.8E-26 180.4 11.0 215 7-244 5-238 (499)
33 PRK06115 dihydrolipoamide dehy 99.9 1E-20 2.3E-25 173.4 16.5 207 7-241 3-228 (466)
34 PRK07818 dihydrolipoamide dehy 99.9 1.6E-20 3.5E-25 172.4 17.4 211 7-240 4-225 (466)
35 PLN02546 glutathione reductase 99.9 2.5E-21 5.5E-26 179.4 11.5 206 7-244 79-309 (558)
36 TIGR01438 TGR thioredoxin and 99.9 5.1E-21 1.1E-25 175.7 13.4 211 7-244 2-236 (484)
37 PRK06912 acoL dihydrolipoamide 99.8 1.7E-20 3.8E-25 171.7 14.7 204 9-238 2-221 (458)
38 PRK12831 putative oxidoreducta 99.8 1.2E-20 2.7E-25 172.3 13.5 170 6-226 139-321 (464)
39 PRK12779 putative bifunctional 99.8 2.6E-20 5.7E-25 181.6 15.8 169 6-227 305-488 (944)
40 TIGR01350 lipoamide_DH dihydro 99.8 3.2E-20 6.9E-25 170.5 15.5 202 7-236 1-219 (461)
41 PRK07845 flavoprotein disulfid 99.8 5.1E-20 1.1E-24 168.9 15.5 211 8-240 2-230 (466)
42 PRK06327 dihydrolipoamide dehy 99.8 6.1E-20 1.3E-24 168.8 15.5 209 7-239 4-235 (475)
43 PRK13512 coenzyme A disulfide 99.8 7.9E-20 1.7E-24 166.4 15.5 188 8-238 2-199 (438)
44 TIGR01423 trypano_reduc trypan 99.8 3.8E-20 8.3E-25 169.7 12.7 222 6-244 2-247 (486)
45 PRK07846 mycothione reductase; 99.8 4.7E-20 1E-24 168.2 13.2 205 7-234 1-213 (451)
46 PRK09564 coenzyme A disulfide 99.8 1.1E-19 2.3E-24 166.2 15.3 184 9-234 2-197 (444)
47 PTZ00153 lipoamide dehydrogena 99.8 4.2E-20 9.1E-25 173.5 12.8 213 6-237 115-362 (659)
48 PRK04965 NADH:flavorubredoxin 99.8 1.7E-19 3.6E-24 161.5 16.1 169 8-225 3-179 (377)
49 TIGR01316 gltA glutamate synth 99.8 9.9E-20 2.1E-24 166.0 13.7 161 6-220 132-306 (449)
50 COG1252 Ndh NADH dehydrogenase 99.8 4.1E-21 8.8E-26 168.6 3.7 208 7-254 3-235 (405)
51 KOG1335 Dihydrolipoamide dehyd 99.8 7.6E-20 1.7E-24 154.9 10.5 224 6-249 38-273 (506)
52 PRK09754 phenylpropionate diox 99.8 2.2E-19 4.8E-24 161.6 13.1 172 8-225 4-182 (396)
53 PRK14989 nitrite reductase sub 99.8 2.4E-19 5.1E-24 173.3 14.0 185 8-239 4-198 (847)
54 PRK09853 putative selenate red 99.8 5.5E-19 1.2E-23 170.4 16.4 170 6-231 538-715 (1019)
55 KOG0404 Thioredoxin reductase 99.8 1E-18 2.3E-23 137.9 14.9 175 7-219 8-190 (322)
56 TIGR02374 nitri_red_nirB nitri 99.8 2.7E-19 5.8E-24 172.9 12.5 181 10-236 1-190 (785)
57 PRK12778 putative bifunctional 99.8 5.7E-19 1.2E-23 170.6 13.9 169 6-227 430-612 (752)
58 PRK11749 dihydropyrimidine deh 99.8 5.9E-19 1.3E-23 161.6 12.7 167 6-226 139-314 (457)
59 KOG4716 Thioredoxin reductase 99.8 1.8E-18 4E-23 144.4 13.8 219 6-244 18-254 (503)
60 TIGR03452 mycothione_red mycot 99.8 1.3E-18 2.7E-23 159.0 13.0 204 7-233 2-215 (452)
61 PTZ00318 NADH dehydrogenase-li 99.8 3.5E-19 7.5E-24 161.5 8.6 201 6-244 9-244 (424)
62 PRK12814 putative NADPH-depend 99.8 1.4E-18 3E-23 164.9 12.9 171 6-230 192-368 (652)
63 PLN02852 ferredoxin-NADP+ redu 99.8 3.2E-18 6.8E-23 155.6 14.2 166 6-224 25-225 (491)
64 COG3634 AhpF Alkyl hydroperoxi 99.8 2.4E-18 5.1E-23 144.2 12.1 177 6-219 210-387 (520)
65 PRK12775 putative trifunctiona 99.8 2.6E-18 5.5E-23 169.1 13.9 168 7-226 430-612 (1006)
66 PRK12770 putative glutamate sy 99.8 5.9E-18 1.3E-22 150.0 14.8 175 4-219 15-206 (352)
67 TIGR03315 Se_ygfK putative sel 99.8 7.1E-18 1.5E-22 163.5 14.6 168 7-230 537-712 (1012)
68 PRK12769 putative oxidoreducta 99.7 3.2E-17 6.9E-22 156.2 14.6 169 6-228 326-511 (654)
69 TIGR01318 gltD_gamma_fam gluta 99.7 8.5E-17 1.8E-21 147.4 15.1 169 6-228 140-325 (467)
70 PRK12810 gltD glutamate syntha 99.7 2.3E-17 4.9E-22 151.5 11.3 158 7-218 143-314 (471)
71 COG3486 IucD Lysine/ornithine 99.7 2.3E-16 5E-21 135.5 15.2 204 6-231 4-235 (436)
72 TIGR03169 Nterm_to_SelD pyridi 99.7 6.4E-17 1.4E-21 144.2 11.5 181 9-236 1-199 (364)
73 PRK12809 putative oxidoreducta 99.7 2.2E-16 4.7E-21 149.9 14.9 169 6-228 309-494 (639)
74 TIGR01372 soxA sarcosine oxida 99.7 1.2E-15 2.7E-20 150.9 17.9 175 7-219 163-351 (985)
75 TIGR01317 GOGAT_sm_gam glutama 99.7 5.6E-16 1.2E-20 142.6 13.5 159 7-219 143-317 (485)
76 COG1251 NirB NAD(P)H-nitrite r 99.7 5.2E-16 1.1E-20 142.1 12.6 205 8-258 4-217 (793)
77 PRK13984 putative oxidoreducta 99.7 6.3E-16 1.4E-20 146.4 12.8 157 6-216 282-454 (604)
78 KOG2495 NADH-dehydrogenase (ub 99.7 2.9E-16 6.3E-21 135.2 8.9 217 6-252 54-297 (491)
79 PRK09897 hypothetical protein; 99.6 9.5E-15 2.1E-19 134.4 17.9 189 8-219 2-245 (534)
80 KOG1336 Monodehydroascorbate/f 99.6 2.8E-15 6.1E-20 131.3 12.9 194 7-248 74-275 (478)
81 PRK12771 putative glutamate sy 99.6 4.9E-15 1.1E-19 139.1 12.7 168 6-228 136-310 (564)
82 PRK06567 putative bifunctional 99.6 2.1E-15 4.5E-20 144.3 9.7 201 6-240 382-606 (1028)
83 PTZ00188 adrenodoxin reductase 99.6 4E-14 8.8E-19 127.1 16.3 44 6-49 38-82 (506)
84 COG4529 Uncharacterized protei 99.6 3.2E-13 6.9E-18 119.3 18.5 195 8-219 2-231 (474)
85 COG0493 GltD NADPH-dependent g 99.5 2.4E-14 5.2E-19 129.1 10.3 158 7-218 123-295 (457)
86 KOG1800 Ferredoxin/adrenodoxin 99.5 2E-13 4.4E-18 116.2 12.7 149 5-207 18-180 (468)
87 TIGR03385 CoA_CoA_reduc CoA-di 99.5 1.5E-13 3.3E-18 125.1 12.3 159 21-222 1-172 (427)
88 COG2081 Predicted flavoprotein 99.5 8.5E-14 1.9E-18 120.1 9.3 135 7-153 3-171 (408)
89 PF13454 NAD_binding_9: FAD-NA 99.5 1.5E-12 3.3E-17 101.7 13.0 126 11-147 1-155 (156)
90 PF03486 HI0933_like: HI0933-l 99.4 9.4E-13 2E-17 117.8 11.0 134 8-152 1-169 (409)
91 TIGR02032 GG-red-SF geranylger 99.4 6.2E-12 1.4E-16 108.6 12.8 128 8-149 1-148 (295)
92 PRK06847 hypothetical protein; 99.3 7.6E-11 1.7E-15 105.6 18.0 133 7-151 4-165 (375)
93 TIGR02023 BchP-ChlP geranylger 99.3 3.4E-11 7.4E-16 108.3 15.7 135 8-150 1-156 (388)
94 PRK04176 ribulose-1,5-biphosph 99.3 1.9E-11 4E-16 103.3 12.3 140 7-149 25-173 (257)
95 PRK10157 putative oxidoreducta 99.3 4.2E-11 9.2E-16 108.9 15.5 132 6-149 4-164 (428)
96 PF07992 Pyr_redox_2: Pyridine 99.3 1.1E-13 2.3E-18 113.0 -1.8 152 9-193 1-159 (201)
97 PF01494 FAD_binding_3: FAD bi 99.3 1.4E-11 3.1E-16 109.1 11.6 135 8-150 2-173 (356)
98 PRK08244 hypothetical protein; 99.3 6.9E-11 1.5E-15 109.7 16.5 133 8-149 3-159 (493)
99 KOG0399 Glutamate synthase [Am 99.3 5.5E-12 1.2E-16 119.7 9.0 152 7-211 1785-1949(2142)
100 TIGR00292 thiazole biosynthesi 99.3 3.6E-11 7.9E-16 101.2 12.8 140 7-149 21-170 (254)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.3 1E-10 2.3E-15 109.5 17.1 137 6-150 9-175 (538)
102 PRK08773 2-octaprenyl-3-methyl 99.3 6E-11 1.3E-15 106.9 14.6 137 1-150 1-170 (392)
103 COG0446 HcaD Uncharacterized N 99.3 1.2E-11 2.7E-16 111.9 10.1 179 10-238 1-188 (415)
104 PRK08013 oxidoreductase; Provi 99.3 5E-11 1.1E-15 107.7 13.9 132 7-150 3-169 (400)
105 PRK06184 hypothetical protein; 99.3 1.8E-10 3.9E-15 107.1 16.8 135 7-150 3-169 (502)
106 PLN02463 lycopene beta cyclase 99.3 6.7E-11 1.5E-15 107.5 13.6 127 6-150 27-170 (447)
107 PRK07364 2-octaprenyl-6-methox 99.3 1.2E-10 2.6E-15 105.8 15.2 136 6-150 17-182 (415)
108 PRK06834 hypothetical protein; 99.3 1.6E-10 3.5E-15 106.7 15.6 132 7-150 3-157 (488)
109 PRK10015 oxidoreductase; Provi 99.3 1.8E-10 3.8E-15 104.8 15.5 132 6-149 4-164 (429)
110 PRK07190 hypothetical protein; 99.3 1.8E-10 4E-15 106.2 15.8 135 1-149 1-165 (487)
111 COG0644 FixC Dehydrogenases (f 99.3 8.9E-11 1.9E-15 105.8 13.3 132 7-149 3-152 (396)
112 PRK08132 FAD-dependent oxidore 99.3 3.1E-10 6.7E-15 106.6 17.3 139 4-150 20-186 (547)
113 PRK07494 2-octaprenyl-6-methox 99.2 1.1E-10 2.3E-15 105.1 13.4 133 6-150 6-168 (388)
114 TIGR01790 carotene-cycl lycope 99.2 1.8E-10 3.9E-15 103.7 14.8 129 9-149 1-141 (388)
115 PRK07333 2-octaprenyl-6-methox 99.2 1.5E-10 3.3E-15 104.6 14.0 132 7-150 1-168 (403)
116 PRK07045 putative monooxygenas 99.2 1.8E-10 4E-15 103.6 14.2 135 6-150 4-166 (388)
117 PRK06185 hypothetical protein; 99.2 2.3E-10 5.1E-15 103.6 14.8 137 5-149 4-169 (407)
118 PRK05714 2-octaprenyl-3-methyl 99.2 9.1E-11 2E-15 106.2 12.1 131 8-150 3-169 (405)
119 PRK06126 hypothetical protein; 99.2 4.5E-10 9.7E-15 105.5 16.8 140 4-150 4-189 (545)
120 COG0654 UbiH 2-polyprenyl-6-me 99.2 2E-10 4.4E-15 103.2 13.6 133 7-150 2-163 (387)
121 PRK06753 hypothetical protein; 99.2 2.6E-10 5.7E-15 102.1 14.3 127 9-150 2-153 (373)
122 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.5E-10 3.3E-15 92.0 10.4 135 8-147 31-176 (262)
123 PRK08163 salicylate hydroxylas 99.2 1.7E-10 3.6E-15 104.2 12.0 134 7-151 4-168 (396)
124 COG3380 Predicted NAD/FAD-depe 99.2 1.3E-10 2.7E-15 95.2 9.6 124 8-147 2-158 (331)
125 TIGR01988 Ubi-OHases Ubiquinon 99.2 3E-10 6.5E-15 102.0 13.1 130 9-150 1-164 (385)
126 PRK07588 hypothetical protein; 99.2 2.6E-10 5.7E-15 102.7 12.7 132 8-152 1-161 (391)
127 PRK07538 hypothetical protein; 99.2 2.1E-09 4.5E-14 97.6 18.6 136 8-150 1-166 (413)
128 PRK11445 putative oxidoreducta 99.2 5.7E-10 1.2E-14 99.0 14.4 133 7-150 1-158 (351)
129 PRK06617 2-octaprenyl-6-methox 99.2 4.2E-10 9.1E-15 100.8 13.5 131 8-151 2-162 (374)
130 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.5E-10 7.5E-15 101.9 12.9 133 6-150 4-170 (391)
131 PRK07608 ubiquinone biosynthes 99.2 5.3E-10 1.2E-14 100.6 13.5 130 7-150 5-168 (388)
132 PRK09126 hypothetical protein; 99.2 6.6E-10 1.4E-14 100.1 14.0 132 7-150 3-168 (392)
133 TIGR02028 ChlP geranylgeranyl 99.2 1E-09 2.3E-14 98.9 15.1 136 8-149 1-160 (398)
134 PF05834 Lycopene_cycl: Lycope 99.2 6.5E-10 1.4E-14 99.4 13.7 122 9-149 1-142 (374)
135 PLN00093 geranylgeranyl diphos 99.2 8.9E-10 1.9E-14 100.6 14.7 137 7-149 39-199 (450)
136 TIGR01989 COQ6 Ubiquinone bios 99.2 3.9E-10 8.3E-15 103.1 12.4 136 8-151 1-185 (437)
137 PRK07236 hypothetical protein; 99.2 1.7E-09 3.7E-14 97.3 16.2 129 6-151 5-156 (386)
138 PRK08243 4-hydroxybenzoate 3-m 99.2 1.1E-09 2.5E-14 98.6 15.0 137 7-151 2-165 (392)
139 TIGR01984 UbiH 2-polyprenyl-6- 99.1 3.6E-10 7.8E-15 101.5 11.7 130 9-150 1-163 (382)
140 PRK08850 2-octaprenyl-6-methox 99.1 9.9E-10 2.1E-14 99.5 13.6 132 7-150 4-169 (405)
141 TIGR00275 flavoprotein, HI0933 99.1 8.6E-10 1.9E-14 99.4 12.8 128 11-151 1-162 (400)
142 PRK08294 phenol 2-monooxygenas 99.1 3.1E-09 6.7E-14 101.0 17.0 142 6-150 31-211 (634)
143 PLN02697 lycopene epsilon cycl 99.1 1.8E-09 4E-14 99.7 15.0 130 6-149 107-248 (529)
144 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 1.5E-09 3.2E-14 97.7 13.8 134 8-150 3-164 (390)
145 PRK05732 2-octaprenyl-6-methox 99.1 1.6E-09 3.5E-14 97.7 13.5 131 7-149 3-169 (395)
146 PRK06475 salicylate hydroxylas 99.1 1.9E-09 4.1E-14 97.5 13.8 134 8-150 3-168 (400)
147 PRK05868 hypothetical protein; 99.1 3.2E-09 6.9E-14 95.0 15.0 131 8-151 2-162 (372)
148 PRK06996 hypothetical protein; 99.1 1.7E-09 3.6E-14 97.8 13.3 132 6-147 10-172 (398)
149 PRK08849 2-octaprenyl-3-methyl 99.1 1.7E-09 3.8E-14 97.2 13.3 132 8-150 4-168 (384)
150 PF01266 DAO: FAD dependent ox 99.1 1.1E-09 2.4E-14 97.1 11.7 59 78-149 144-203 (358)
151 TIGR03219 salicylate_mono sali 99.1 2.4E-09 5.2E-14 97.3 13.1 128 9-150 2-160 (414)
152 TIGR01813 flavo_cyto_c flavocy 99.0 8.9E-09 1.9E-13 94.2 16.2 136 9-150 1-193 (439)
153 PF01946 Thi4: Thi4 family; PD 99.0 3E-09 6.5E-14 85.1 11.3 134 7-147 17-163 (230)
154 PRK13369 glycerol-3-phosphate 99.0 8.1E-09 1.7E-13 96.0 15.5 63 79-149 153-215 (502)
155 PF00070 Pyr_redox: Pyridine n 99.0 6E-09 1.3E-13 71.7 10.7 79 9-124 1-79 (80)
156 PRK12266 glpD glycerol-3-phosp 99.0 1.1E-08 2.4E-13 95.1 15.7 40 5-44 4-43 (508)
157 PF12831 FAD_oxidored: FAD dep 99.0 2.3E-10 4.9E-15 104.1 4.0 131 9-147 1-148 (428)
158 PRK06481 fumarate reductase fl 99.0 2.4E-08 5.3E-13 92.8 17.3 39 6-44 60-98 (506)
159 TIGR01377 soxA_mon sarcosine o 99.0 6.6E-09 1.4E-13 93.2 13.2 58 79-149 143-200 (380)
160 PRK05192 tRNA uridine 5-carbox 99.0 4.7E-09 1E-13 97.4 12.0 132 6-149 3-157 (618)
161 PRK11259 solA N-methyltryptoph 99.0 1E-08 2.2E-13 91.9 13.8 36 7-42 3-38 (376)
162 PLN02661 Putative thiazole syn 99.0 5.8E-09 1.3E-13 90.6 11.3 138 7-148 92-243 (357)
163 PF13450 NAD_binding_8: NAD(P) 99.0 1E-09 2.2E-14 72.7 4.9 49 12-60 1-49 (68)
164 PF00890 FAD_binding_2: FAD bi 99.0 1.3E-08 2.7E-13 92.6 13.8 136 9-150 1-204 (417)
165 PLN02985 squalene monooxygenas 98.9 4.1E-08 8.8E-13 91.2 16.1 137 6-150 42-209 (514)
166 PTZ00383 malate:quinone oxidor 98.9 1.9E-08 4.1E-13 92.5 13.3 62 79-150 209-274 (497)
167 PRK07121 hypothetical protein; 98.9 6.2E-08 1.3E-12 89.9 16.9 38 7-44 20-57 (492)
168 PRK11728 hydroxyglutarate oxid 98.9 2.2E-08 4.7E-13 90.4 13.3 58 79-149 147-204 (393)
169 PRK11101 glpA sn-glycerol-3-ph 98.9 3.2E-08 6.9E-13 92.8 14.8 38 6-43 5-42 (546)
170 PRK13339 malate:quinone oxidor 98.9 4.7E-08 1E-12 89.7 15.4 39 5-43 4-44 (497)
171 PRK12409 D-amino acid dehydrog 98.9 7.6E-08 1.7E-12 87.3 16.1 63 80-149 196-258 (410)
172 PLN02927 antheraxanthin epoxid 98.9 5.4E-08 1.2E-12 91.9 15.3 131 6-150 80-249 (668)
173 PRK05976 dihydrolipoamide dehy 98.9 1E-07 2.2E-12 88.1 17.0 105 7-154 180-284 (472)
174 PRK08274 tricarballylate dehyd 98.9 8.6E-08 1.9E-12 88.4 16.4 137 6-149 3-192 (466)
175 TIGR01789 lycopene_cycl lycope 98.9 2.3E-08 4.9E-13 89.2 12.0 122 9-149 1-138 (370)
176 KOG2755 Oxidoreductase [Genera 98.9 3.2E-09 6.8E-14 86.6 5.9 160 9-228 1-173 (334)
177 TIGR01350 lipoamide_DH dihydro 98.9 1.1E-07 2.3E-12 87.7 16.7 103 7-154 170-272 (461)
178 PF01134 GIDA: Glucose inhibit 98.9 1.2E-08 2.7E-13 89.9 9.9 125 9-147 1-150 (392)
179 PRK08275 putative oxidoreducta 98.9 1.2E-07 2.5E-12 89.3 16.7 145 1-150 3-201 (554)
180 TIGR03329 Phn_aa_oxid putative 98.9 2.8E-08 6.1E-13 91.4 12.0 58 79-150 181-238 (460)
181 COG0579 Predicted dehydrogenas 98.8 1.1E-08 2.3E-13 91.3 8.6 62 79-150 151-212 (429)
182 PRK08958 sdhA succinate dehydr 98.8 1.3E-07 2.8E-12 89.4 16.2 44 1-44 1-44 (588)
183 PRK01747 mnmC bifunctional tRN 98.8 3.8E-08 8.3E-13 94.5 12.9 60 78-150 405-464 (662)
184 TIGR01373 soxB sarcosine oxida 98.8 9.1E-08 2E-12 86.7 14.6 36 6-41 29-66 (407)
185 KOG2820 FAD-dependent oxidored 98.8 5E-08 1.1E-12 82.6 11.4 144 1-154 1-217 (399)
186 TIGR03364 HpnW_proposed FAD de 98.8 4.7E-08 1E-12 87.3 12.2 34 8-41 1-34 (365)
187 TIGR00136 gidA glucose-inhibit 98.8 9.6E-08 2.1E-12 88.8 14.3 132 8-149 1-154 (617)
188 PLN02464 glycerol-3-phosphate 98.8 8.7E-08 1.9E-12 91.1 14.4 39 6-44 70-108 (627)
189 TIGR01320 mal_quin_oxido malat 98.8 8E-08 1.7E-12 88.6 13.8 65 79-149 176-240 (483)
190 PRK06263 sdhA succinate dehydr 98.8 9E-08 2E-12 89.8 14.3 143 1-150 1-198 (543)
191 COG1249 Lpd Pyruvate/2-oxoglut 98.8 1E-07 2.2E-12 86.5 14.1 105 6-155 172-276 (454)
192 COG0578 GlpA Glycerol-3-phosph 98.8 1.3E-07 2.8E-12 86.3 14.6 137 6-149 11-225 (532)
193 PRK04965 NADH:flavorubredoxin 98.8 1.1E-07 2.5E-12 85.2 14.2 97 7-147 141-237 (377)
194 PRK07057 sdhA succinate dehydr 98.8 2.6E-07 5.7E-12 87.4 16.9 38 6-43 11-48 (591)
195 PRK09078 sdhA succinate dehydr 98.8 2.5E-07 5.4E-12 87.6 16.7 39 6-44 11-49 (598)
196 TIGR02053 MerA mercuric reduct 98.8 3.9E-07 8.5E-12 84.0 17.7 104 7-154 166-269 (463)
197 PTZ00139 Succinate dehydrogena 98.8 2.9E-07 6.3E-12 87.4 16.6 39 6-44 28-66 (617)
198 PRK06912 acoL dihydrolipoamide 98.8 3.2E-07 6.9E-12 84.4 16.5 102 7-154 170-271 (458)
199 PLN00128 Succinate dehydrogena 98.8 2.8E-07 6.1E-12 87.6 16.4 39 6-44 49-87 (635)
200 PRK06416 dihydrolipoamide dehy 98.8 3.6E-07 7.8E-12 84.2 16.8 104 7-154 172-275 (462)
201 PRK07804 L-aspartate oxidase; 98.8 1.8E-07 3.8E-12 87.7 14.6 139 6-150 15-211 (541)
202 PRK08641 sdhA succinate dehydr 98.8 3.1E-07 6.7E-12 86.9 16.1 38 7-44 3-40 (589)
203 PF06039 Mqo: Malate:quinone o 98.8 4.1E-08 8.8E-13 87.1 9.4 64 81-150 181-245 (488)
204 PRK07573 sdhA succinate dehydr 98.7 3.7E-07 7.9E-12 87.0 15.9 37 7-43 35-71 (640)
205 PRK06452 sdhA succinate dehydr 98.7 3E-07 6.6E-12 86.6 15.2 39 6-44 4-42 (566)
206 PRK07251 pyridine nucleotide-d 98.7 2E-07 4.3E-12 85.4 13.6 100 7-154 157-256 (438)
207 PRK06854 adenylylsulfate reduc 98.7 5.5E-07 1.2E-11 85.5 16.8 35 7-41 11-47 (608)
208 PRK08401 L-aspartate oxidase; 98.7 1.5E-07 3.2E-12 86.7 12.6 35 8-42 2-36 (466)
209 KOG2415 Electron transfer flav 98.7 6.9E-08 1.5E-12 83.9 9.5 142 4-149 73-256 (621)
210 TIGR01812 sdhA_frdA_Gneg succi 98.7 2.8E-07 6E-12 87.1 14.3 35 9-43 1-35 (566)
211 TIGR00551 nadB L-aspartate oxi 98.7 2.8E-07 6E-12 85.5 14.0 134 7-150 2-190 (488)
212 PRK05257 malate:quinone oxidor 98.7 2.3E-07 5.1E-12 85.6 12.9 64 81-150 183-247 (494)
213 PRK06327 dihydrolipoamide dehy 98.7 1E-06 2.2E-11 81.5 17.1 105 7-154 183-287 (475)
214 PRK12835 3-ketosteroid-delta-1 98.7 7.7E-07 1.7E-11 84.1 16.5 39 6-44 10-48 (584)
215 PRK07818 dihydrolipoamide dehy 98.7 8.1E-07 1.8E-11 82.0 16.4 105 7-154 172-276 (466)
216 PRK06370 mercuric reductase; V 98.7 4.3E-07 9.3E-12 83.7 14.5 104 7-154 171-274 (463)
217 PRK12839 hypothetical protein; 98.7 1.6E-06 3.5E-11 81.7 18.3 45 1-45 1-46 (572)
218 PRK05249 soluble pyridine nucl 98.7 3.1E-07 6.8E-12 84.6 13.4 100 7-153 175-274 (461)
219 PRK09754 phenylpropionate diox 98.7 2.1E-07 4.5E-12 84.1 11.9 99 7-152 144-242 (396)
220 PLN02815 L-aspartate oxidase 98.7 4.8E-07 1E-11 85.3 14.6 37 7-44 29-65 (594)
221 PRK05945 sdhA succinate dehydr 98.7 3E-07 6.4E-12 86.9 13.2 38 7-44 3-42 (575)
222 PRK06175 L-aspartate oxidase; 98.7 5.1E-07 1.1E-11 82.3 14.2 37 7-44 4-40 (433)
223 PRK13977 myosin-cross-reactive 98.7 6.5E-07 1.4E-11 82.7 14.6 40 7-46 22-65 (576)
224 PRK12837 3-ketosteroid-delta-1 98.7 1.4E-06 3E-11 81.3 17.1 43 1-44 1-43 (513)
225 PRK06116 glutathione reductase 98.7 4.2E-07 9.2E-12 83.5 13.5 102 7-154 167-268 (450)
226 PRK07803 sdhA succinate dehydr 98.7 6.7E-07 1.4E-11 85.2 15.1 37 7-43 8-44 (626)
227 PRK12842 putative succinate de 98.7 5E-07 1.1E-11 85.4 14.1 39 6-44 8-46 (574)
228 PF04820 Trp_halogenase: Trypt 98.7 5.1E-08 1.1E-12 89.2 7.0 61 78-149 151-211 (454)
229 KOG1335 Dihydrolipoamide dehyd 98.7 6E-07 1.3E-11 77.4 12.8 153 7-210 211-368 (506)
230 PF00070 Pyr_redox: Pyridine n 98.6 2.9E-08 6.3E-13 68.2 3.8 45 188-233 1-45 (80)
231 COG0665 DadA Glycine/D-amino a 98.6 2.3E-07 5E-12 83.4 10.5 38 6-43 3-40 (387)
232 PRK06115 dihydrolipoamide dehy 98.6 8.5E-07 1.9E-11 81.8 14.3 105 7-153 174-278 (466)
233 PRK07843 3-ketosteroid-delta-1 98.6 2E-06 4.3E-11 81.0 17.0 44 1-44 1-44 (557)
234 PTZ00306 NADH-dependent fumara 98.6 1.2E-06 2.7E-11 88.9 16.5 40 6-45 408-447 (1167)
235 TIGR01424 gluta_reduc_2 glutat 98.6 6.4E-07 1.4E-11 82.2 13.2 100 7-153 166-265 (446)
236 PRK06069 sdhA succinate dehydr 98.6 7.1E-07 1.5E-11 84.4 13.8 39 6-44 4-45 (577)
237 PTZ00367 squalene epoxidase; P 98.6 7.5E-07 1.6E-11 83.5 13.3 35 6-40 32-66 (567)
238 PRK06134 putative FAD-binding 98.6 2.9E-06 6.3E-11 80.3 17.4 40 6-45 11-50 (581)
239 PRK00711 D-amino acid dehydrog 98.6 8.8E-07 1.9E-11 80.5 13.6 33 9-41 2-34 (416)
240 PRK08205 sdhA succinate dehydr 98.6 1.5E-06 3.3E-11 82.2 15.5 38 6-44 4-41 (583)
241 KOG2614 Kynurenine 3-monooxyge 98.6 1.1E-07 2.4E-12 82.9 7.0 36 8-43 3-38 (420)
242 PRK07846 mycothione reductase; 98.6 1.7E-06 3.6E-11 79.5 15.1 100 7-154 166-265 (451)
243 COG1233 Phytoene dehydrogenase 98.6 6.7E-08 1.5E-12 89.3 6.0 42 7-48 3-44 (487)
244 PRK09231 fumarate reductase fl 98.6 9E-07 2E-11 83.6 13.7 39 6-44 3-43 (582)
245 TIGR01811 sdhA_Bsu succinate d 98.6 1.6E-06 3.5E-11 82.2 15.4 33 10-42 1-33 (603)
246 PRK08255 salicylyl-CoA 5-hydro 98.6 2E-07 4.3E-12 90.8 9.5 112 9-150 2-142 (765)
247 COG1252 Ndh NADH dehydrogenase 98.6 6.4E-07 1.4E-11 79.5 11.7 132 8-195 156-300 (405)
248 TIGR01421 gluta_reduc_1 glutat 98.6 1.2E-06 2.5E-11 80.5 13.8 103 7-154 166-268 (450)
249 PRK09077 L-aspartate oxidase; 98.6 1.7E-06 3.6E-11 81.2 15.0 38 6-44 7-44 (536)
250 PLN02507 glutathione reductase 98.6 1E-06 2.2E-11 81.9 13.4 101 7-154 203-303 (499)
251 PRK07208 hypothetical protein; 98.6 1.8E-07 3.9E-12 86.7 8.5 44 6-49 3-46 (479)
252 PRK06292 dihydrolipoamide dehy 98.6 2.6E-06 5.7E-11 78.5 16.0 103 7-154 169-271 (460)
253 TIGR01176 fum_red_Fp fumarate 98.6 2.7E-06 5.8E-11 80.3 16.2 38 7-44 3-42 (580)
254 KOG0029 Amine oxidase [Seconda 98.6 7.8E-08 1.7E-12 88.3 5.7 39 6-44 14-52 (501)
255 PRK07845 flavoprotein disulfid 98.6 1.1E-06 2.4E-11 81.0 13.3 101 7-154 177-277 (466)
256 PRK12845 3-ketosteroid-delta-1 98.6 4.9E-06 1.1E-10 78.2 17.4 39 6-45 15-53 (564)
257 PRK07395 L-aspartate oxidase; 98.6 6.5E-07 1.4E-11 84.0 11.4 38 6-44 8-45 (553)
258 PRK06467 dihydrolipoamide dehy 98.6 1.8E-06 3.9E-11 79.7 14.2 104 7-154 174-277 (471)
259 PRK08626 fumarate reductase fl 98.6 3.1E-06 6.7E-11 81.0 16.1 38 6-43 4-41 (657)
260 PRK09564 coenzyme A disulfide 98.5 9.7E-07 2.1E-11 81.0 12.3 99 7-152 149-247 (444)
261 PRK08071 L-aspartate oxidase; 98.5 1.5E-06 3.2E-11 80.9 13.5 37 7-44 3-39 (510)
262 PRK08010 pyridine nucleotide-d 98.5 1.4E-06 3E-11 79.9 13.2 99 7-153 158-256 (441)
263 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.1E-06 2.5E-11 80.1 12.3 99 7-153 137-235 (427)
264 PRK12844 3-ketosteroid-delta-1 98.5 5.3E-06 1.1E-10 78.1 16.6 40 6-45 5-44 (557)
265 PRK14727 putative mercuric red 98.5 2.2E-06 4.8E-11 79.3 13.6 99 7-154 188-286 (479)
266 PRK14694 putative mercuric red 98.5 2.1E-06 4.5E-11 79.3 13.3 99 7-154 178-276 (468)
267 TIGR03452 mycothione_red mycot 98.5 2.3E-06 5E-11 78.6 13.3 100 7-154 169-268 (452)
268 PRK13512 coenzyme A disulfide 98.5 1.3E-06 2.8E-11 80.0 11.2 96 7-153 148-243 (438)
269 PRK12843 putative FAD-binding 98.5 8E-06 1.7E-10 77.3 16.5 40 7-46 16-55 (578)
270 TIGR01423 trypano_reduc trypan 98.5 2.8E-06 6E-11 78.6 13.1 101 7-153 187-290 (486)
271 COG0445 GidA Flavin-dependent 98.5 5.1E-07 1.1E-11 81.4 7.9 132 7-149 4-158 (621)
272 PTZ00058 glutathione reductase 98.5 2.7E-06 5.9E-11 79.7 13.1 102 7-153 237-338 (561)
273 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 6.6E-07 1.4E-11 80.3 8.5 36 8-43 1-36 (433)
274 PRK14989 nitrite reductase sub 98.5 1.8E-06 3.9E-11 84.6 12.1 103 7-153 145-247 (847)
275 TIGR01438 TGR thioredoxin and 98.5 3.9E-06 8.5E-11 77.6 13.8 102 7-153 180-281 (484)
276 COG1148 HdrA Heterodisulfide r 98.5 4.3E-07 9.4E-12 80.5 7.0 39 7-45 124-162 (622)
277 PRK13748 putative mercuric red 98.4 3.5E-06 7.5E-11 79.7 13.1 99 7-154 270-368 (561)
278 PRK07233 hypothetical protein; 98.4 6.9E-07 1.5E-11 81.6 7.7 40 9-48 1-40 (434)
279 PLN02576 protoporphyrinogen ox 98.4 7E-07 1.5E-11 83.1 7.5 41 5-45 10-51 (496)
280 PTZ00052 thioredoxin reductase 98.4 5.7E-06 1.2E-10 76.9 13.4 100 7-154 182-281 (499)
281 TIGR02374 nitri_red_nirB nitri 98.4 2.6E-06 5.6E-11 83.3 11.5 101 7-153 140-240 (785)
282 COG0446 HcaD Uncharacterized N 98.4 3.8E-06 8.3E-11 76.0 11.8 102 7-152 136-238 (415)
283 PRK11883 protoporphyrinogen ox 98.4 4.9E-07 1.1E-11 83.0 5.9 39 8-46 1-41 (451)
284 KOG1298 Squalene monooxygenase 98.4 2.2E-06 4.7E-11 74.1 9.1 137 7-150 45-209 (509)
285 KOG2404 Fumarate reductase, fl 98.4 3.7E-06 8E-11 71.1 10.2 38 8-45 10-47 (477)
286 KOG1346 Programmed cell death 98.4 1.1E-06 2.4E-11 76.5 7.3 180 7-219 178-384 (659)
287 COG0562 Glf UDP-galactopyranos 98.4 2.6E-06 5.6E-11 72.0 9.2 76 7-94 1-78 (374)
288 PLN02268 probable polyamine ox 98.4 5E-07 1.1E-11 82.6 5.3 38 8-45 1-38 (435)
289 PTZ00153 lipoamide dehydrogena 98.3 8.3E-06 1.8E-10 77.7 13.3 110 7-154 312-430 (659)
290 TIGR02061 aprA adenosine phosp 98.3 1.2E-05 2.5E-10 76.2 13.9 33 9-41 1-37 (614)
291 TIGR02733 desat_CrtD C-3',4' d 98.3 1E-06 2.2E-11 81.9 6.7 39 8-46 2-40 (492)
292 COG1053 SdhA Succinate dehydro 98.3 8.1E-06 1.7E-10 76.3 12.6 40 5-44 4-43 (562)
293 TIGR00562 proto_IX_ox protopor 98.3 9.6E-07 2.1E-11 81.4 6.5 39 7-45 2-44 (462)
294 PLN02676 polyamine oxidase 98.3 1.1E-06 2.5E-11 81.2 6.9 47 6-52 25-72 (487)
295 PRK07512 L-aspartate oxidase; 98.3 7.7E-06 1.7E-10 76.3 12.3 34 6-41 8-41 (513)
296 COG3349 Uncharacterized conser 98.3 6.7E-07 1.5E-11 80.5 5.0 37 8-44 1-37 (485)
297 PRK13800 putative oxidoreducta 98.3 2.8E-05 6E-10 77.3 16.8 35 7-41 13-47 (897)
298 TIGR02485 CobZ_N-term precorri 98.3 7.2E-06 1.6E-10 75.0 11.9 61 80-149 122-183 (432)
299 PLN02546 glutathione reductase 98.3 1.1E-05 2.5E-10 75.6 13.0 101 7-153 252-352 (558)
300 PTZ00318 NADH dehydrogenase-li 98.3 1.8E-05 4E-10 72.1 13.8 91 8-147 174-278 (424)
301 TIGR02734 crtI_fam phytoene de 98.3 1.1E-06 2.3E-11 82.0 5.7 37 10-46 1-37 (502)
302 TIGR02730 carot_isom carotene 98.3 1.3E-06 2.9E-11 81.1 6.3 40 8-47 1-40 (493)
303 TIGR00031 UDP-GALP_mutase UDP- 98.3 1.5E-06 3.3E-11 77.2 6.2 39 8-46 2-40 (377)
304 KOG0685 Flavin-containing amin 98.3 1.4E-06 2.9E-11 77.4 5.4 39 7-45 21-60 (498)
305 PLN02568 polyamine oxidase 98.2 2E-06 4.4E-11 80.3 6.2 41 7-47 5-50 (539)
306 COG1232 HemY Protoporphyrinoge 98.2 1.7E-06 3.7E-11 77.9 5.5 39 9-47 2-42 (444)
307 TIGR03140 AhpF alkyl hydropero 98.2 1.9E-05 4E-10 73.8 12.4 101 7-154 352-453 (515)
308 KOG2311 NAD/FAD-utilizing prot 98.2 9E-06 2E-10 72.2 9.5 34 6-39 27-60 (679)
309 PRK10262 thioredoxin reductase 98.2 2.5E-05 5.3E-10 68.5 12.3 105 7-153 146-250 (321)
310 PRK12416 protoporphyrinogen ox 98.2 1.9E-06 4.1E-11 79.5 5.1 37 8-44 2-44 (463)
311 TIGR01292 TRX_reduct thioredox 98.2 2.3E-05 5.1E-10 67.7 11.6 98 7-152 141-239 (300)
312 PTZ00363 rab-GDP dissociation 98.1 2.9E-06 6.2E-11 77.2 5.0 42 6-47 3-44 (443)
313 COG1231 Monoamine oxidase [Ami 98.1 3.8E-06 8.2E-11 74.5 5.5 43 2-44 2-44 (450)
314 TIGR02731 phytoene_desat phyto 98.1 3.3E-06 7.1E-11 77.7 5.4 37 9-45 1-37 (453)
315 PRK15317 alkyl hydroperoxide r 98.1 4E-05 8.7E-10 71.7 12.0 100 7-153 351-451 (517)
316 PRK05335 tRNA (uracil-5-)-meth 98.1 9.4E-06 2E-10 72.7 7.2 35 8-42 3-37 (436)
317 PF13434 K_oxygenase: L-lysine 98.1 3E-05 6.4E-10 68.4 9.9 132 6-146 189-338 (341)
318 PLN02529 lysine-specific histo 98.1 6.4E-06 1.4E-10 79.0 6.0 40 6-45 159-198 (738)
319 KOG0042 Glycerol-3-phosphate d 98.1 6.4E-06 1.4E-10 74.1 5.4 40 6-45 66-105 (680)
320 KOG1336 Monodehydroascorbate/f 98.0 4.4E-05 9.4E-10 68.1 10.5 107 7-157 213-319 (478)
321 COG0029 NadB Aspartate oxidase 98.0 6.8E-05 1.5E-09 67.3 11.5 33 9-42 9-41 (518)
322 COG2907 Predicted NAD/FAD-bind 98.0 6.4E-06 1.4E-10 70.4 4.4 44 1-45 2-45 (447)
323 TIGR02732 zeta_caro_desat caro 98.0 7.6E-06 1.6E-10 75.6 5.2 36 9-44 1-36 (474)
324 KOG2852 Possible oxidoreductas 98.0 0.00012 2.7E-09 61.1 11.6 39 6-44 9-53 (380)
325 KOG2844 Dimethylglycine dehydr 98.0 3.9E-05 8.4E-10 70.9 9.0 61 77-149 183-243 (856)
326 PLN02487 zeta-carotene desatur 98.0 1.2E-05 2.6E-10 75.4 5.8 40 7-46 75-114 (569)
327 PLN02328 lysine-specific histo 97.9 1.3E-05 2.9E-10 77.4 5.9 40 6-45 237-276 (808)
328 KOG3851 Sulfide:quinone oxidor 97.9 4.5E-05 9.9E-10 64.5 8.1 35 6-40 38-74 (446)
329 PRK12834 putative FAD-binding 97.9 1.6E-05 3.4E-10 74.9 5.6 40 6-45 3-44 (549)
330 KOG2853 Possible oxidoreductas 97.9 5.6E-05 1.2E-09 64.6 7.9 35 6-40 85-123 (509)
331 KOG2665 Predicted FAD-dependen 97.9 0.00013 2.8E-09 61.8 9.8 38 6-43 47-86 (453)
332 COG2509 Uncharacterized FAD-de 97.9 0.00013 2.9E-09 64.7 10.3 59 81-150 173-231 (486)
333 PLN02612 phytoene desaturase 97.9 2.1E-05 4.5E-10 74.3 5.7 40 6-45 92-131 (567)
334 TIGR01316 gltA glutamate synth 97.9 0.00024 5.2E-09 65.3 12.3 34 7-40 272-305 (449)
335 TIGR03169 Nterm_to_SelD pyridi 97.9 0.00015 3.3E-09 64.7 10.7 91 7-147 145-241 (364)
336 PRK12831 putative oxidoreducta 97.8 0.00035 7.6E-09 64.4 12.6 35 6-40 280-314 (464)
337 COG3573 Predicted oxidoreducta 97.8 0.0002 4.4E-09 61.2 9.8 40 6-45 4-45 (552)
338 TIGR02462 pyranose_ox pyranose 97.8 2.9E-05 6.3E-10 72.2 5.2 40 8-47 1-40 (544)
339 PRK12770 putative glutamate sy 97.8 0.00034 7.4E-09 62.2 11.9 33 8-40 173-206 (352)
340 PLN03000 amine oxidase 97.8 4.1E-05 8.9E-10 74.3 6.0 43 6-48 183-225 (881)
341 PLN02976 amine oxidase 97.7 4.9E-05 1.1E-09 76.7 5.7 43 6-48 692-734 (1713)
342 TIGR03143 AhpF_homolog putativ 97.7 0.00041 8.9E-09 65.5 11.8 35 7-41 143-177 (555)
343 PRK01438 murD UDP-N-acetylmura 97.7 6.3E-05 1.4E-09 69.8 6.1 34 7-40 16-49 (480)
344 PF00732 GMC_oxred_N: GMC oxid 97.7 3.4E-05 7.3E-10 66.8 4.1 35 8-42 1-36 (296)
345 KOG1276 Protoporphyrinogen oxi 97.7 5.3E-05 1.1E-09 66.6 5.0 41 6-46 10-52 (491)
346 PRK12778 putative bifunctional 97.6 0.0019 4.1E-08 63.4 15.5 34 7-40 570-604 (752)
347 KOG3855 Monooxygenase involved 97.6 0.0012 2.6E-08 58.1 12.2 38 6-43 35-78 (481)
348 PRK11749 dihydropyrimidine deh 97.6 0.0012 2.5E-08 60.9 12.2 101 7-152 273-388 (457)
349 COG3075 GlpB Anaerobic glycero 97.5 0.00011 2.5E-09 62.5 4.6 34 7-40 2-35 (421)
350 PF06100 Strep_67kDa_ant: Stre 97.5 0.0021 4.7E-08 58.2 12.7 40 7-46 2-45 (500)
351 TIGR01318 gltD_gamma_fam gluta 97.5 0.0056 1.2E-07 56.6 15.9 34 7-40 282-316 (467)
352 KOG2495 NADH-dehydrogenase (ub 97.5 0.00014 3E-09 64.1 4.7 102 9-155 220-335 (491)
353 PRK05329 anaerobic glycerol-3- 97.5 0.00015 3.2E-09 65.7 5.1 34 7-40 2-35 (422)
354 PRK02106 choline dehydrogenase 97.4 0.00017 3.6E-09 68.3 5.1 35 6-40 4-39 (560)
355 COG3486 IucD Lysine/ornithine 97.4 0.0024 5.2E-08 56.2 11.2 52 98-155 293-344 (436)
356 TIGR01372 soxA sarcosine oxida 97.4 0.0018 3.9E-08 65.3 11.5 96 7-153 317-413 (985)
357 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00026 5.6E-09 60.4 4.4 36 8-43 4-39 (439)
358 COG2303 BetA Choline dehydroge 97.3 0.00024 5.2E-09 66.7 4.7 39 2-40 2-40 (542)
359 PRK12769 putative oxidoreducta 97.3 0.0039 8.4E-08 60.2 12.8 34 7-40 468-502 (654)
360 PRK12814 putative NADPH-depend 97.3 0.014 3E-07 56.3 16.5 34 7-40 323-357 (652)
361 PRK12810 gltD glutamate syntha 97.3 0.0039 8.4E-08 57.8 12.0 34 7-40 281-315 (471)
362 KOG1346 Programmed cell death 97.2 0.00099 2.1E-08 58.6 6.3 99 7-152 347-450 (659)
363 PRK12779 putative bifunctional 97.2 0.0066 1.4E-07 60.7 12.9 34 7-40 447-480 (944)
364 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00059 1.3E-08 61.3 4.9 33 8-40 1-33 (419)
365 PLN02172 flavin-containing mon 97.0 0.0025 5.4E-08 58.7 7.9 34 7-40 204-237 (461)
366 TIGR01810 betA choline dehydro 97.0 0.00068 1.5E-08 63.8 4.0 32 9-40 1-33 (532)
367 TIGR01317 GOGAT_sm_gam glutama 97.0 0.07 1.5E-06 49.6 17.2 35 7-41 283-318 (485)
368 COG0492 TrxB Thioredoxin reduc 97.0 0.01 2.2E-07 51.5 10.8 98 7-153 143-240 (305)
369 KOG4254 Phytoene desaturase [C 97.0 0.00079 1.7E-08 59.8 3.9 39 6-44 13-51 (561)
370 KOG3923 D-aspartate oxidase [A 96.9 0.0015 3.3E-08 55.0 5.1 33 7-39 3-42 (342)
371 PRK09853 putative selenate red 96.9 0.011 2.4E-07 58.8 11.7 34 7-40 668-703 (1019)
372 PRK12809 putative oxidoreducta 96.9 0.048 1E-06 52.6 15.8 34 7-40 451-485 (639)
373 PLN02785 Protein HOTHEAD 96.9 0.0014 3E-08 62.1 5.1 34 6-40 54-87 (587)
374 KOG2960 Protein involved in th 96.9 0.00026 5.6E-09 56.6 0.2 53 8-60 77-133 (328)
375 KOG0405 Pyridine nucleotide-di 96.8 0.0052 1.1E-07 53.1 7.4 103 6-154 188-290 (478)
376 PF13450 NAD_binding_8: NAD(P) 96.8 0.0013 2.8E-08 43.3 3.1 29 191-219 1-29 (68)
377 PRK12775 putative trifunctiona 96.8 0.026 5.6E-07 57.1 13.1 33 7-39 571-604 (1006)
378 PF00996 GDI: GDP dissociation 96.6 0.0025 5.4E-08 57.8 4.6 43 6-48 3-45 (438)
379 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0025 5.4E-08 49.7 3.8 32 9-40 1-32 (157)
380 KOG4716 Thioredoxin reductase 96.6 0.0091 2E-07 51.4 7.1 102 7-148 198-299 (503)
381 PRK05335 tRNA (uracil-5-)-meth 96.5 0.0025 5.4E-08 57.4 3.9 33 187-219 3-35 (436)
382 COG1251 NirB NAD(P)H-nitrite r 96.5 0.0054 1.2E-07 58.0 6.0 101 7-153 145-245 (793)
383 PRK13984 putative oxidoreducta 96.5 0.11 2.4E-06 49.8 15.0 31 7-37 418-454 (604)
384 PTZ00188 adrenodoxin reductase 96.5 0.0045 9.7E-08 56.7 5.2 36 185-220 38-74 (506)
385 TIGR03315 Se_ygfK putative sel 96.5 0.035 7.6E-07 55.6 11.7 35 6-40 665-701 (1012)
386 TIGR03862 flavo_PP4765 unchara 96.4 0.018 3.9E-07 51.3 8.7 60 79-151 84-143 (376)
387 PRK07066 3-hydroxybutyryl-CoA 96.4 0.0055 1.2E-07 53.4 5.2 40 1-40 1-40 (321)
388 TIGR00137 gid_trmFO tRNA:m(5)U 96.4 0.0033 7.2E-08 56.8 3.7 33 188-220 2-34 (433)
389 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0051 1.1E-07 49.1 4.3 32 9-40 1-32 (180)
390 PRK05329 anaerobic glycerol-3- 96.2 0.051 1.1E-06 49.4 10.6 94 11-149 219-318 (422)
391 PRK12771 putative glutamate sy 96.2 0.15 3.3E-06 48.4 14.1 34 7-40 267-301 (564)
392 COG0569 TrkA K+ transport syst 96.2 0.0071 1.5E-07 50.1 4.5 34 8-41 1-34 (225)
393 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0053 1.1E-07 49.2 3.3 34 8-41 1-34 (185)
394 PLN02852 ferredoxin-NADP+ redu 96.1 0.0076 1.6E-07 55.7 4.5 35 185-219 25-61 (491)
395 KOG1238 Glucose dehydrogenase/ 96.0 0.0075 1.6E-07 56.3 4.1 37 6-42 56-93 (623)
396 PF13241 NAD_binding_7: Putati 96.0 0.0055 1.2E-07 44.0 2.6 36 184-219 5-40 (103)
397 PRK07236 hypothetical protein; 95.9 0.0091 2E-07 53.8 4.2 34 186-219 6-39 (386)
398 KOG0029 Amine oxidase [Seconda 95.9 0.0097 2.1E-07 55.2 4.4 36 184-219 13-48 (501)
399 PRK12409 D-amino acid dehydrog 95.9 0.0085 1.8E-07 54.4 4.0 33 187-219 2-34 (410)
400 PRK07819 3-hydroxybutyryl-CoA 95.9 0.012 2.7E-07 50.6 4.7 34 8-41 6-39 (286)
401 PRK06567 putative bifunctional 95.9 0.0099 2.1E-07 58.8 4.4 36 184-219 381-416 (1028)
402 PF13241 NAD_binding_7: Putati 95.8 0.01 2.2E-07 42.7 3.3 35 6-40 6-40 (103)
403 PF01494 FAD_binding_3: FAD bi 95.8 0.0087 1.9E-07 52.7 3.7 32 188-219 3-34 (356)
404 COG1635 THI4 Ribulose 1,5-bisp 95.8 0.012 2.5E-07 47.8 3.8 37 183-219 27-63 (262)
405 TIGR01470 cysG_Nterm siroheme 95.8 0.018 3.9E-07 46.9 5.1 34 7-40 9-42 (205)
406 PF01593 Amino_oxidase: Flavin 95.8 0.01 2.2E-07 53.7 4.0 39 99-147 225-263 (450)
407 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.014 3E-07 50.9 4.6 33 8-40 3-35 (308)
408 PRK02705 murD UDP-N-acetylmura 95.7 0.012 2.7E-07 54.2 4.3 33 9-41 2-34 (459)
409 COG1148 HdrA Heterodisulfide r 95.7 0.012 2.5E-07 53.2 3.8 34 186-219 124-157 (622)
410 PRK06847 hypothetical protein; 95.7 0.013 2.8E-07 52.4 4.2 34 186-219 4-37 (375)
411 PF01488 Shikimate_DH: Shikima 95.7 0.028 6.1E-07 42.5 5.4 35 6-40 11-46 (135)
412 PRK06719 precorrin-2 dehydroge 95.6 0.022 4.7E-07 44.4 4.7 33 6-38 12-44 (157)
413 COG1004 Ugd Predicted UDP-gluc 95.6 0.016 3.5E-07 51.1 4.2 32 9-40 2-33 (414)
414 PF01262 AlaDh_PNT_C: Alanine 95.6 0.021 4.6E-07 45.0 4.6 35 6-40 19-53 (168)
415 PRK09260 3-hydroxybutyryl-CoA 95.6 0.018 3.8E-07 49.7 4.4 33 8-40 2-34 (288)
416 PRK08163 salicylate hydroxylas 95.5 0.016 3.4E-07 52.4 4.3 34 186-219 4-37 (396)
417 KOG4405 GDP dissociation inhib 95.5 0.015 3.3E-07 51.3 3.8 48 5-52 6-53 (547)
418 PRK05868 hypothetical protein; 95.5 0.014 3E-07 52.4 3.8 33 187-219 2-34 (372)
419 PF01266 DAO: FAD dependent ox 95.5 0.014 3E-07 51.5 3.7 31 188-218 1-31 (358)
420 TIGR01373 soxB sarcosine oxida 95.5 0.019 4.2E-07 52.0 4.6 47 173-219 17-65 (407)
421 PRK08293 3-hydroxybutyryl-CoA 95.5 0.02 4.3E-07 49.4 4.4 33 8-40 4-36 (287)
422 PRK14106 murD UDP-N-acetylmura 95.5 0.024 5.2E-07 52.2 5.2 34 7-40 5-38 (450)
423 PRK08268 3-hydroxy-acyl-CoA de 95.4 0.023 5E-07 53.0 5.0 41 1-41 1-41 (507)
424 PF02558 ApbA: Ketopantoate re 95.4 0.025 5.4E-07 43.6 4.4 31 10-40 1-31 (151)
425 PF07992 Pyr_redox_2: Pyridine 95.4 0.016 3.4E-07 46.8 3.5 32 188-219 1-32 (201)
426 PRK06718 precorrin-2 dehydroge 95.4 0.029 6.3E-07 45.6 4.9 34 6-39 9-42 (202)
427 PRK06719 precorrin-2 dehydroge 95.4 0.02 4.3E-07 44.6 3.8 34 183-216 10-43 (157)
428 COG3634 AhpF Alkyl hydroperoxi 95.4 0.23 4.9E-06 43.3 10.3 35 7-41 354-388 (520)
429 PRK07233 hypothetical protein; 95.4 0.017 3.6E-07 52.7 3.9 32 188-219 1-32 (434)
430 TIGR01377 soxA_mon sarcosine o 95.3 0.017 3.7E-07 51.8 3.8 32 188-219 2-33 (380)
431 PRK06753 hypothetical protein; 95.3 0.018 3.8E-07 51.6 3.9 32 188-219 2-33 (373)
432 PRK11259 solA N-methyltryptoph 95.3 0.017 3.7E-07 51.6 3.8 33 187-219 4-36 (376)
433 PRK07530 3-hydroxybutyryl-CoA 95.3 0.031 6.7E-07 48.3 5.2 33 8-40 5-37 (292)
434 COG0654 UbiH 2-polyprenyl-6-me 95.3 0.018 3.8E-07 51.9 3.8 38 187-224 3-40 (387)
435 PRK11883 protoporphyrinogen ox 95.3 0.019 4.1E-07 52.7 4.0 33 187-219 1-35 (451)
436 PRK06035 3-hydroxyacyl-CoA deh 95.3 0.024 5.2E-07 49.0 4.2 34 8-41 4-37 (291)
437 PRK06475 salicylate hydroxylas 95.2 0.02 4.4E-07 51.8 3.9 33 187-219 3-35 (400)
438 TIGR02032 GG-red-SF geranylger 95.2 0.021 4.5E-07 49.0 3.7 32 188-219 2-33 (295)
439 TIGR01470 cysG_Nterm siroheme 95.2 0.026 5.7E-07 46.0 4.0 36 184-219 7-42 (205)
440 KOG1399 Flavin-containing mono 95.2 0.023 5E-07 51.9 4.0 34 186-219 6-39 (448)
441 PRK07364 2-octaprenyl-6-methox 95.2 0.019 4.2E-07 52.1 3.6 34 186-219 18-51 (415)
442 PF01946 Thi4: Thi4 family; PD 95.1 0.022 4.8E-07 46.2 3.2 34 186-219 17-50 (230)
443 PRK06249 2-dehydropantoate 2-r 95.1 0.041 8.8E-07 48.1 5.2 34 7-40 5-38 (313)
444 PRK05675 sdhA succinate dehydr 95.1 0.36 7.7E-06 46.0 11.8 66 80-150 125-190 (570)
445 PRK12266 glpD glycerol-3-phosp 95.0 0.022 4.8E-07 53.3 3.7 33 187-219 7-39 (508)
446 PRK09126 hypothetical protein; 95.0 0.022 4.9E-07 51.3 3.6 33 187-219 4-36 (392)
447 PLN02545 3-hydroxybutyryl-CoA 95.0 0.035 7.5E-07 48.1 4.6 33 8-40 5-37 (295)
448 PRK06718 precorrin-2 dehydroge 95.0 0.027 5.9E-07 45.8 3.8 35 184-218 8-42 (202)
449 PRK07588 hypothetical protein; 95.0 0.025 5.4E-07 51.0 3.9 32 188-219 2-33 (391)
450 PRK07045 putative monooxygenas 95.0 0.025 5.4E-07 50.9 3.8 33 187-219 6-38 (388)
451 PF01134 GIDA: Glucose inhibit 95.0 0.024 5.2E-07 50.6 3.5 28 188-215 1-28 (392)
452 TIGR03197 MnmC_Cterm tRNA U-34 95.0 0.072 1.6E-06 47.9 6.7 60 78-150 132-191 (381)
453 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.032 7E-07 50.7 4.4 34 8-41 4-37 (415)
454 PLN02268 probable polyamine ox 95.0 0.024 5.3E-07 51.9 3.7 33 187-219 1-33 (435)
455 PRK08773 2-octaprenyl-3-methyl 94.9 0.025 5.3E-07 51.1 3.6 33 187-219 7-39 (392)
456 TIGR00518 alaDH alanine dehydr 94.9 0.041 8.9E-07 49.2 4.9 35 6-40 166-200 (370)
457 TIGR01988 Ubi-OHases Ubiquinon 94.9 0.024 5.2E-07 50.8 3.5 32 188-219 1-32 (385)
458 COG0562 Glf UDP-galactopyranos 94.9 0.032 6.9E-07 47.9 3.9 32 188-219 3-34 (374)
459 PRK07208 hypothetical protein; 94.9 0.03 6.4E-07 52.0 4.1 34 186-219 4-37 (479)
460 PF00899 ThiF: ThiF family; I 94.9 0.043 9.3E-07 41.5 4.2 34 7-40 2-36 (135)
461 PRK14619 NAD(P)H-dependent gly 94.9 0.049 1.1E-06 47.5 5.1 34 7-40 4-37 (308)
462 PRK11101 glpA sn-glycerol-3-ph 94.9 0.027 5.9E-07 53.2 3.8 33 187-219 7-39 (546)
463 PRK05808 3-hydroxybutyryl-CoA 94.9 0.038 8.2E-07 47.5 4.4 34 8-41 4-37 (282)
464 PLN00093 geranylgeranyl diphos 94.8 0.066 1.4E-06 49.3 6.1 35 185-219 38-72 (450)
465 PRK01438 murD UDP-N-acetylmura 94.8 0.035 7.6E-07 51.6 4.4 35 185-219 15-49 (480)
466 PRK11728 hydroxyglutarate oxid 94.8 0.028 6E-07 50.8 3.6 33 187-219 3-37 (393)
467 PF03486 HI0933_like: HI0933-l 94.8 0.024 5.2E-07 51.3 3.2 32 188-219 2-33 (409)
468 PF01210 NAD_Gly3P_dh_N: NAD-d 94.8 0.019 4.2E-07 44.6 2.3 32 188-219 1-32 (157)
469 PRK08013 oxidoreductase; Provi 94.8 0.027 5.9E-07 51.0 3.5 33 187-219 4-36 (400)
470 TIGR02360 pbenz_hydroxyl 4-hyd 94.8 0.034 7.4E-07 50.2 4.1 34 187-220 3-36 (390)
471 PF03446 NAD_binding_2: NAD bi 94.8 0.044 9.6E-07 42.9 4.2 33 8-40 2-34 (163)
472 COG3349 Uncharacterized conser 94.8 0.033 7.2E-07 50.8 3.9 33 187-219 1-33 (485)
473 TIGR03364 HpnW_proposed FAD de 94.8 0.031 6.7E-07 49.9 3.7 32 188-219 2-33 (365)
474 PRK07494 2-octaprenyl-6-methox 94.8 0.028 6E-07 50.6 3.5 33 187-219 8-40 (388)
475 PRK06184 hypothetical protein; 94.8 0.03 6.6E-07 52.3 3.8 33 187-219 4-36 (502)
476 PRK06522 2-dehydropantoate 2-r 94.8 0.045 9.7E-07 47.5 4.6 32 9-40 2-33 (304)
477 COG1233 Phytoene dehydrogenase 94.7 0.041 8.9E-07 51.2 4.6 33 187-219 4-36 (487)
478 PRK14618 NAD(P)H-dependent gly 94.7 0.053 1.1E-06 47.7 5.1 33 8-40 5-37 (328)
479 PF00743 FMO-like: Flavin-bind 94.7 0.029 6.2E-07 52.7 3.5 33 187-219 2-34 (531)
480 TIGR02028 ChlP geranylgeranyl 94.7 0.033 7.2E-07 50.4 3.8 32 188-219 2-33 (398)
481 PRK09424 pntA NAD(P) transhydr 94.7 0.042 9.1E-07 51.0 4.4 35 6-40 164-198 (509)
482 PRK08244 hypothetical protein; 94.7 0.031 6.8E-07 52.1 3.7 33 187-219 3-35 (493)
483 TIGR01984 UbiH 2-polyprenyl-6- 94.7 0.03 6.4E-07 50.3 3.4 32 188-219 1-33 (382)
484 PRK04148 hypothetical protein; 94.7 0.032 7E-07 41.8 3.0 34 7-41 17-50 (134)
485 TIGR00292 thiazole biosynthesi 94.7 0.036 7.8E-07 46.8 3.7 34 186-219 21-54 (254)
486 PRK07608 ubiquinone biosynthes 94.7 0.033 7.1E-07 50.1 3.6 33 187-219 6-38 (388)
487 PRK06185 hypothetical protein; 94.6 0.034 7.4E-07 50.4 3.7 34 186-219 6-39 (407)
488 PRK05714 2-octaprenyl-3-methyl 94.6 0.029 6.2E-07 50.9 3.2 33 187-219 3-35 (405)
489 PRK00711 D-amino acid dehydrog 94.6 0.035 7.6E-07 50.4 3.8 32 188-219 2-33 (416)
490 PRK12921 2-dehydropantoate 2-r 94.6 0.052 1.1E-06 47.1 4.7 30 9-38 2-31 (305)
491 COG0686 Ald Alanine dehydrogen 94.6 0.036 7.7E-07 47.3 3.4 35 6-40 167-201 (371)
492 PRK08849 2-octaprenyl-3-methyl 94.6 0.033 7.2E-07 50.1 3.6 33 187-219 4-36 (384)
493 PLN02464 glycerol-3-phosphate 94.6 0.034 7.4E-07 53.4 3.8 33 187-219 72-104 (627)
494 PRK13369 glycerol-3-phosphate 94.6 0.035 7.5E-07 51.9 3.8 33 187-219 7-39 (502)
495 TIGR02354 thiF_fam2 thiamine b 94.6 0.057 1.2E-06 43.8 4.6 34 7-40 21-55 (200)
496 TIGR03219 salicylate_mono sali 94.6 0.036 7.9E-07 50.4 3.8 32 188-219 2-34 (414)
497 COG0665 DadA Glycine/D-amino a 94.6 0.04 8.6E-07 49.4 4.0 34 186-219 4-37 (387)
498 PRK05192 tRNA uridine 5-carbox 94.6 0.035 7.6E-07 52.5 3.7 33 187-219 5-37 (618)
499 PRK06130 3-hydroxybutyryl-CoA 94.6 0.059 1.3E-06 47.0 4.9 33 8-40 5-37 (311)
500 PRK05708 2-dehydropantoate 2-r 94.6 0.059 1.3E-06 46.9 4.9 33 8-40 3-35 (305)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=2.9e-47 Score=349.21 Aligned_cols=274 Identities=33% Similarity=0.540 Sum_probs=173.3
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC---------CCCceEEecCcccccCCCCCCCCCCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (303)
++|+|||||++||++|+.|.+.|+++++||+++.+||+|++. .|+++..+.++.++.|+++|+|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999999999999852 58899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCC---CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~ 155 (303)
++.++.+|++.|++++++..+|+|+++|+++++.++ .+.|.|++.+.+ +.++ -.||.||+|||.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998653 368999886532 3345 57999999999999999995
Q ss_pred --CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-----
Q 022090 156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV----- 228 (303)
Q Consensus 156 --~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~----- 228 (303)
+||++.| +|.++|+.+|+++..+++|+|+|||+|+||+|+|.+++..+++|+++.|++.|++|+...
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999998653
Q ss_pred ------HHHHHHHhhCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCccceeccCCCceEEecchhcccccceEEEEe
Q 022090 229 ------YLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQNLL 300 (303)
Q Consensus 229 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~ 300 (303)
+....+.+.+|....+.+........+ +.+.+|+. |.++.+ ...|+++++++++|.+|+|+++.
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~~~------~~~~~ind~l~~~i~~G~i~vk~ 300 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHRFF------SQHPTINDELPNRIRSGRIKVKP 300 (531)
T ss_dssp ----------------------------------------------------------------------------EE
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccc-cccccc------ccccccccccccccccccccccc
Confidence 111223334555444443332222222 45567774 655544 47899999999999999999864
No 2
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-39 Score=288.96 Aligned_cols=210 Identities=35% Similarity=0.635 Sum_probs=195.0
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
..++||+|||||++|+++|.+|.++|.+ ++||||++.+||+|+.++|+++.++.+..+++|+++|++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3568999999999999999999999998 999999999999999999999999999999999999987 44566666678
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~ 163 (303)
.+|+..+++.+++..+|.+++.|+.++++++++.|+|++.++.. .+ +.||+||+|||.++.|++|.|+|.+.|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f- 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF- 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence 99999999999999999999999999999888899999998743 34 569999999999999999999999999
Q ss_pred cCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (303)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~ 227 (303)
.|.++|+.++.+...+++|+|+|||+|+||+|++.+|++.|++||++.|++.+++|...
T Consensus 158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~ 216 (443)
T COG2072 158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPL 216 (443)
T ss_pred -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999765
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=3e-36 Score=273.33 Aligned_cols=202 Identities=26% Similarity=0.439 Sum_probs=181.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------------------CCCceEEecCcccccC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL 65 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~~~~ 65 (303)
..++|+|||||++||++|+.|++.|++|++||+++.+||.|... +|++++.+.+...+.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35899999999999999999999999999999999999999652 4777888899999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090 66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (303)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (303)
+++|++.. .+.|+++.++.+|++++++++++..+|+++++|+++++.+ +.|.|.+.++.+ ...+ ..|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~ 162 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF 162 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence 99987653 3678999999999999999999998889999999998865 689999875421 2235 679
Q ss_pred CEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (303)
Q Consensus 139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~ 218 (303)
|.||+|||.++.|++|.+||.+.| .|..+|+..++.+..+++|+|+|||+|.||+|+|.+|+..+.+||+++|+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 999999999999999999999999 99999999999988899999999999999999999999999999999997
Q ss_pred C
Q 022090 219 P 219 (303)
Q Consensus 219 ~ 219 (303)
+
T Consensus 237 ~ 237 (461)
T PLN02172 237 S 237 (461)
T ss_pred c
Confidence 6
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-36 Score=268.21 Aligned_cols=201 Identities=35% Similarity=0.559 Sum_probs=183.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC--------C-CCceEEecCcccccCCCCCCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPM 76 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
..++|+|||||+|||++|+.|.++|+++++|||.+.+||.|.+. . |.+++++.++.+++++++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35799999999999999999999999999999999999999987 5 99999999999999999999998666
Q ss_pred C-CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090 77 F-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (303)
Q Consensus 77 ~-~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~ 155 (303)
+ +++.++.+||+.|++++++..+|+++++|..++...+ +.|.|...+..+. ... ..||.|++|||.+..|++|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCc
Confidence 5 8888999999999999999999999999999887653 6899999875431 245 67999999999987799999
Q ss_pred CCC--ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEee
Q 022090 156 IRG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (303)
Q Consensus 156 ~~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r 217 (303)
++| .+.| .|.++|+.+|+.+..+.+|+|+|||.|+||+|++.+++..+.+|++..+
T Consensus 160 ~~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 160 IPGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CCCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 988 6799 9999999999999999999999999999999999999999999988865
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=5.7e-33 Score=227.55 Aligned_cols=191 Identities=35% Similarity=0.597 Sum_probs=135.9
Q ss_pred EEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCccc---ccCCCCCCCC--------CCCCCC
Q 022090 11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFPS--------SYPMFV 78 (303)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~ 78 (303)
+|||||++||++|..|.++|.+ ++|||+++.+||.|... ++...+..+..+ +.++++.... ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999842 222222222221 1222211110 124567
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g 158 (303)
+..++.+|++++++++++.. +++++|+++++++ +.|.|++.++ .+ +.|++||+|||..+.|++|.++|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence 89999999999999999874 9999999999987 4599999874 47 89999999999888999999999
Q ss_pred ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (303)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~ 222 (303)
..+ ...+|+.++.+...+++++|+|||+|.||+|++..|++.|.+||+++|++.|+
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~~ 203 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIWY 203 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS----
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence 222 36789999988888899999999999999999999999999999999999663
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.92 E-value=6.4e-24 Score=184.21 Aligned_cols=174 Identities=25% Similarity=0.383 Sum_probs=134.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (303)
+||+|||||++|+++|..|++.|.+|+|||+++ .||.|.... .+..++.+ +...+..++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 589999999999999999999999999999987 566554210 01111111 1223456888999
Q ss_pred HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCC
Q 022090 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (303)
Q Consensus 88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~ 167 (303)
.++++++++.. ++ ++|++++..+ +.|.|.+.++ .+ +.||+||+||| +.|..|.+||.+.+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998765 66 8899988765 5688877653 46 89999999999 67778889987766
Q ss_pred CCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+..++...........+++++|||+|.+|+|+|..|++.+.+|++++|.+
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 555455444444445568999999999999999999999999999999987
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.92 E-value=2.7e-25 Score=199.39 Aligned_cols=275 Identities=18% Similarity=0.176 Sum_probs=166.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcCCCCceEEecCcccc-cCCCCC--CCCCCCC-CCCH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC-QLPHLP--FPSSYPM-FVSR 80 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~ 80 (303)
..||++|||+|++|..+|.++++.|.+|.++|+...+|| |.+..|.|+..+....... .+.... +-..... -.+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 469999999999999999999999999999999966666 5566676665443332221 111110 0000011 2345
Q ss_pred HHHHHHHHHHHHHcCCCceeEeCe-EEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090 81 AQFIEHLDHYVSHFNIGPSIRYQR-SVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (303)
Q Consensus 81 ~~l~~~l~~~~~~~~l~~~i~~~~-~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g 158 (303)
.+++++.+...+.......-.+.. .|+-+.-... .+..+|.+... +. ++ ++++++|+||| |+|..|++++
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~----~~-~~a~~iiIATG--S~p~~~~~~~ 154 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DK----ET-ITADNIIIATG--SRPRIPPGPG 154 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC-Cc----eE-EEeCEEEEcCC--CCCcCCCCCC
Confidence 555555555332221110001111 1222211000 01234544432 11 57 89999999999 9999999888
Q ss_pred ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV 238 (303)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~l 238 (303)
.+.. .++.+.+..... ..|++++|||+|.+|+|+|..++++|.+||+++|.+ ++||.++.+++..+.+.|
T Consensus 155 ~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei~~~~~~~l 224 (454)
T COG1249 155 IDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEISKELTKQL 224 (454)
T ss_pred CCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHHHHHHHHHH
Confidence 7653 345555544434 679999999999999999999999999999999999 999999999988877766
Q ss_pred CHHHHHHHHHHHHHHHhcCccccCCCCCCCC-----ccceeccCCCceEEecchhccc-----ccceEEE
Q 022090 239 PFGWVDTLMVMLSRLVYGDLSKYGIPKPREG-----PFFMKAAYGKYPVIDAGTCEKI-----KSGQIQN 298 (303)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i-----~~g~i~~ 298 (303)
.+..++...+..............+...... .-.+..+.|+.|.++..-++++ ..|.|+|
T Consensus 225 ~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V 294 (454)
T COG1249 225 EKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV 294 (454)
T ss_pred HhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence 5543443333322222111100111100100 1133457788888886655542 2366665
No 8
>PRK10262 thioredoxin reductase; Provisional
Probab=99.92 E-value=2.2e-23 Score=182.59 Aligned_cols=177 Identities=18% Similarity=0.305 Sum_probs=136.4
Q ss_pred CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
+...+||+||||||+|+++|..|+++|+++++||+. ..||.+.... ....++. .+...+..++
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~ 65 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLL 65 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHH
Confidence 346789999999999999999999999999999965 4666543210 0111111 1223456788
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~ 163 (303)
.+++.+++..++.+. +++ +|++++..+ +.|++.... .. +.||+||+||| +.|+.|++||.+.|
T Consensus 66 ~~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~- 128 (321)
T PRK10262 66 MERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF- 128 (321)
T ss_pred HHHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc-
Confidence 899999998887643 443 567777654 567776532 36 79999999999 77888999998777
Q ss_pred cCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+..+|.+.+.+.....+++++|||+|.+|+|+|..|++.+.+||+++|++
T Consensus 129 -----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 129 -----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred -----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 677677777766566678999999999999999999999999999999987
No 9
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-23 Score=176.09 Aligned_cols=173 Identities=24% Similarity=0.386 Sum_probs=135.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
.+||+||||||+||+||..+.+.+.+ ++|+|+.. .||..... . ..-.++. ++.-.+..++++
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~------~----~venypg------~~~~~~g~~L~~ 65 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKT------T----DVENYPG------FPGGILGPELME 65 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccc------e----eecCCCC------CccCCchHHHHH
Confidence 58999999999999999999999998 56665543 44332111 0 0001111 123345778999
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
.+.+++..++.+. .. ..|.+++... +.|.|.+.+ .+ ++++.||+||| ..++.|.+||.+.|
T Consensus 66 ~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~--------~~-~~ak~vIiAtG--~~~~~~~~~~e~e~--- 126 (305)
T COG0492 66 QMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDK--------GT-YEAKAVIIATG--AGARKLGVPGEEEF--- 126 (305)
T ss_pred HHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECC--------Ce-EEEeEEEECcC--CcccCCCCCcchhh---
Confidence 9999999888764 33 6677776654 278888877 46 89999999999 66778888887778
Q ss_pred CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.|+.+|++..++. .+++++|+|||+|.+|+|-|..|.+.+.+||+++|++
T Consensus 127 ---~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~ 176 (305)
T COG0492 127 ---EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176 (305)
T ss_pred ---cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence 8888999999887 8899999999999999999999999999999999999
No 10
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.91 E-value=7.1e-23 Score=189.89 Aligned_cols=175 Identities=19% Similarity=0.274 Sum_probs=140.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..+||+|||||++|+++|..|++.|++++++++. +||.|... + .+..++ . ..+..+.++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHHH
Confidence 4689999999999999999999999999999864 78887531 1 011111 0 11346778999
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
++.+.++++++.. +++++|++++..+ +.|.|.+.++ .. +.|+.||+||| +.|+.|++||.+.|
T Consensus 271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~--- 333 (517)
T PRK15317 271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY--- 333 (517)
T ss_pred HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence 9999999998766 8899999998865 6788887654 46 89999999999 56777889998777
Q ss_pred CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+..+++....+.....+++|+|||+|++|+|+|..|+..+.+||++++.+
T Consensus 334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 676666665555455678999999999999999999999999999999987
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.90 E-value=1.1e-22 Score=186.78 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCc-ccccCCCCC-C-CCCCCCCCCHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRA 81 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~ 81 (303)
.++||+|||||++|+++|..|++.|.+|++||+++.+||+|.+ .+.++..+.... .+..+...+ + ....+...+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 4689999999999999999999999999999998888887643 444432211110 000000000 0 00011223445
Q ss_pred HHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 82 ~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++.++.+. ..++.+++. +.+ ++..++ ...+.|...++ +... +.||+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDG-----EVET-LTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--CC
Confidence 55544333 333444432 332 233332 23466665443 2247 89999999999 77
Q ss_pred CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (303)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~ 230 (303)
|..|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||++++++ +++|..+.++
T Consensus 149 p~~p~~~~~~~~--------~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~ 218 (461)
T PRK05249 149 PYRPPDVDFDHP--------RIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI 218 (461)
T ss_pred CCCCCCCCCCCC--------eEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence 888876654321 2344443333 23457999999999999999999999999999999998 7888776666
Q ss_pred HHHHHhhC
Q 022090 231 GVVLFKYV 238 (303)
Q Consensus 231 ~~~~~~~l 238 (303)
...+.+.+
T Consensus 219 ~~~l~~~l 226 (461)
T PRK05249 219 SDALSYHL 226 (461)
T ss_pred HHHHHHHH
Confidence 65554443
No 12
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.90 E-value=3.8e-22 Score=186.20 Aligned_cols=173 Identities=20% Similarity=0.380 Sum_probs=133.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.+||+|||||+||+++|..|++.|++|+|||++ ..||.+... + ....++. ....+..++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~-~---------~i~~~pg-------~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITIT-S---------EVVNYPG-------ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEec-c---------ccccCCC-------CcCCCHHHHHHH
Confidence 589999999999999999999999999999996 467654321 0 0000111 012345688899
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
+.+.+++++++. .+++|++++.++ ..+.|...+ .. +.+++||+||| +.|+.|++||.+.+
T Consensus 66 l~~~~~~~gv~~---~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVKF---LQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCEE---eccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 999888888763 477888887654 456676644 35 78899999999 67888999998766
Q ss_pred CCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+..++.+...+.....+++++|||+|.+|+|+|..|++.|.+||+++|.+
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 565566555544445678999999999999999999999999999999988
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.89 E-value=5.3e-23 Score=187.61 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=128.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (303)
.+||+|||||++|+++|..|++.|.+|+|+|++. +||++ +..|.|+..+....... ....+..+.......+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 5899999999999999999999999999999964 67754 45555553222111110 011111111101112333
Q ss_pred HHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 82 QFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 82 ~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++.++.. ..++..+++. +.++.+. .+ ..+|.... .. +.||+||+||| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~----~~---~~~v~v~~--------~~-~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF----TK---DGTVEVNG--------RD-YTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE----cc---CCEEEECC--------EE-EEeCEEEEecC--CC
Confidence 4444332 2233334433 4443221 11 12344422 56 89999999999 78
Q ss_pred CCCC-CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090 151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (303)
Q Consensus 151 p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~ 229 (303)
|..| ++||.+.. .++.++.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .+++..+..
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~ 208 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM 208 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence 8888 78886532 22222222 22247899999999999999999999999999999998 777877766
Q ss_pred HHHHHHhhCCHHHHH
Q 022090 230 LGVVLFKYVPFGWVD 244 (303)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (303)
++..+.+.|....++
T Consensus 209 ~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 209 ISETITEEYEKEGIN 223 (450)
T ss_pred HHHHHHHHHHHcCCE
Confidence 666665555444443
No 14
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.89 E-value=1.9e-22 Score=176.38 Aligned_cols=205 Identities=27% Similarity=0.376 Sum_probs=127.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCcCC-CCceEEecC--cccccCCCCCCCCC---------
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA--KQFCQLPHLPFPSS--------- 73 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~~~~~--~~~~~~~~~~~~~~--------- 73 (303)
.+|+++||.||++|++|..|.+.+ .++..+|+.+.. .|+..+ .++..+..+ +.+..+.+..-+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999986 899999998764 477543 233332222 11111111111111
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC--CeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 74 --------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 74 --------~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
-..+|++.++.+|+++.+++++... +++++|++|++.... ..|.|.+.+..+ ...+ +.|+.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEEE
Confidence 0145789999999999999998545 999999999987744 358998865222 2367 89999999
Q ss_pred ccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCC--CCCCCeEEEECCCccHHHHHHHHhhccC--ceEEEeecC
Q 022090 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRSP 219 (303)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~vt~~~r~~ 219 (303)
|+| ..|.+|........ ...++|+.++.... ...+++|+|||||.||+|++..|.+.+. +|+++.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 88888864221111 35689999886532 5567999999999999999999999975 799999999
Q ss_pred eeeeehhhH
Q 022090 220 VHVLSREMV 228 (303)
Q Consensus 220 ~~~lp~~~~ 228 (303)
.+.|.++.
T Consensus 226 -~~~~~d~s 233 (341)
T PF13434_consen 226 -GFFPMDDS 233 (341)
T ss_dssp -S-EB----
T ss_pred -ccCCCccc
Confidence 77776654
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=2.1e-22 Score=184.82 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=133.6
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-CCCCCCCCCC---CCCCC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLPFPSSY---PMFVS 79 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~ 79 (303)
..++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+ .|.|+..+........ ....++.... ..-.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 46799999999999999999999999999999997 57887754 3333222111111000 0001100000 11235
Q ss_pred HHHHHHHHHHHHHHcC-------C----CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 80 RAQFIEHLDHYVSHFN-------I----GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~~-------l----~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
+.++.++..+.+..+. + .+. ....+++.++. ..|.|.+.++ +..+ ++||+||+|||
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~~g~v~~id~----~~~~V~~~~g-----~~~~-~~~d~lViATG-- 149 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAIT-VLNGEARFVDE----RTLTVTLNDG-----GEQT-VHFDRAFIGTG-- 149 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeE-EEEEEEEEecC----CEEEEEecCC-----CeEE-EECCEEEEeCC--
Confidence 5666666555443221 0 111 22234555532 4588887664 2247 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
+.|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++.+. .++|..+.
T Consensus 150 s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~ 218 (468)
T PRK14694 150 ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP 218 (468)
T ss_pred CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH
Confidence 78889999997643 2344333222 2234789999999999999999999999999999863 57776655
Q ss_pred HHHHHHHhhC
Q 022090 229 YLGVVLFKYV 238 (303)
Q Consensus 229 ~~~~~~~~~l 238 (303)
+++..+.+.|
T Consensus 219 ~~~~~l~~~l 228 (468)
T PRK14694 219 AVGEAIEAAF 228 (468)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 16
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.89 E-value=1.3e-21 Score=181.20 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=133.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..+||+|||||++|+++|..|++.|.+|+|++. .+||.+... . . +..+... ......++.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~-~--------~~~~~~~-------~~~~~~~l~~ 271 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V-G--------IENLISV-------PYTTGSQLAA 271 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c-C--------ccccccc-------CCCCHHHHHH
Confidence 468999999999999999999999999999975 478876431 0 0 0001111 1134668888
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
++.+++++++++. +.+++|++++..+ +.+.+.+.++ .. +.||+||+||| +.|+.|++||.+.+
T Consensus 272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~--- 334 (515)
T TIGR03140 272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY--- 334 (515)
T ss_pred HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence 9999888888766 8889999998754 5677777653 46 89999999999 66777889987655
Q ss_pred CCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+..++...........+++++|||+|++|+|+|..|++.+.+||++++.+
T Consensus 335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 444444443333334568999999999999999999999999999999887
No 17
>PRK14727 putative mercuric reductase; Provisional
Probab=99.89 E-value=2.5e-22 Score=184.70 Aligned_cols=221 Identities=19% Similarity=0.190 Sum_probs=134.0
Q ss_pred CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcccc----cCCCCCCCCCCCC
Q 022090 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPM 76 (303)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 76 (303)
...+.++||+|||+|++|+++|..|+++|.+|+++|+++.+||+|.+ .|.|+..+..+.... ..+.+.++...+
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~- 89 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP- 89 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC-
Confidence 33445799999999999999999999999999999998889998864 345544322221111 111111111111
Q ss_pred CCCHHHHHHHHHHHHHHcC---CCceeEeCeEEEE----EEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 77 FVSRAQFIEHLDHYVSHFN---IGPSIRYQRSVES----ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~---l~~~i~~~~~V~~----i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
-.+...+..+......... ....+..+..|+- ....+ ...+.|...++ +..+ +.||+||+||| +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g-----~~~~-~~~d~lViATG--s 160 (479)
T PRK14727 90 SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDG-----GERV-LAADRCLIATG--S 160 (479)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCC-----ceEE-EEeCEEEEecC--C
Confidence 1234444443333322210 0000000001111 11222 24566665443 2247 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (303)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~ 229 (303)
.|..|++||.+.. ...++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++. .+++..+..
T Consensus 161 ~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~~ 229 (479)
T PRK14727 161 TPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDPL 229 (479)
T ss_pred CCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchHH
Confidence 8899999987532 1222222222 2234689999999999999999999999999999874 577776666
Q ss_pred HHHHHHhhCCHHHH
Q 022090 230 LGVVLFKYVPFGWV 243 (303)
Q Consensus 230 ~~~~~~~~l~~~~~ 243 (303)
++..+.+.|....+
T Consensus 230 ~~~~l~~~L~~~GV 243 (479)
T PRK14727 230 LGETLTACFEKEGI 243 (479)
T ss_pred HHHHHHHHHHhCCC
Confidence 66555554443333
No 18
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.89 E-value=2.3e-22 Score=184.49 Aligned_cols=209 Identities=15% Similarity=0.097 Sum_probs=130.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc-c---cCCCCCCCCCCCCCCCH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF-C---QLPHLPFPSSYPMFVSR 80 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 80 (303)
.++||+|||||++|+.+|..|++.|.+|+|+|+.+.+||+| +..|+|+..+...... . ....+..... ....+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 81 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDI 81 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCH
Confidence 35899999999999999999999999999999987778854 5556665332111100 0 0011100000 112344
Q ss_pred HHHHHHHHHHH-----------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 81 AQFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 81 ~~l~~~l~~~~-----------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
..+.++....+ +..+++. +. ..+..++ .....|...++ +..+ +.||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s 146 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--S 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--C
Confidence 45555444332 2334432 22 2233221 13344443332 2257 89999999999 6
Q ss_pred CCCC-CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 150 NPFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 150 ~p~~-p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
.|.. |.+++... .++.+.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ .++|..+.
T Consensus 147 ~p~~~p~~~~~~~---------~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~ 215 (471)
T PRK06467 147 RPIQLPFIPHDDP---------RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK 215 (471)
T ss_pred CCCCCCCCCCCCC---------cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH
Confidence 7753 44444221 2343333333 22346899999999999999999999999999999998 88888777
Q ss_pred HHHHHHHhhCCHH
Q 022090 229 YLGVVLFKYVPFG 241 (303)
Q Consensus 229 ~~~~~~~~~l~~~ 241 (303)
.++..+.+.|...
T Consensus 216 ~~~~~~~~~l~~~ 228 (471)
T PRK06467 216 DIVKVFTKRIKKQ 228 (471)
T ss_pred HHHHHHHHHHhhc
Confidence 7776666655443
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.89 E-value=3.5e-22 Score=183.35 Aligned_cols=202 Identities=18% Similarity=0.222 Sum_probs=127.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc----CCCCCCCCCCCCCCCH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (303)
..+||+|||||++|+++|..|+++|.+|+|+|+.. +||.| +..+.|+..+........ +..+.+... ....++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999987 77754 556666543222111111 011111100 112355
Q ss_pred HHHHHHHHHH-----------HHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 81 ~~l~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
.++.+|.++. .++.+++. +.+ +++.++. ..+.|...++ . .. +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~~----~~~~v~~~~~-----~-~~-~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVDP----NTVRVMTEDG-----E-QT-YTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----CEEEEecCCC-----c-EE-EEeCEEEEeCC--C
Confidence 6666664443 33344432 333 3333321 2344543221 1 56 89999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 150 NPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
.|..| ||.+. .+. ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 213 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK 213 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence 66543 45432 332 333333322 23457899999999999999999999999999999998 78887665
Q ss_pred HHHHHHHh
Q 022090 229 YLGVVLFK 236 (303)
Q Consensus 229 ~~~~~~~~ 236 (303)
++...+.+
T Consensus 214 ~~~~~l~~ 221 (462)
T PRK06416 214 EISKLAER 221 (462)
T ss_pred HHHHHHHH
Confidence 55554444
No 20
>PRK06370 mercuric reductase; Validated
Probab=99.88 E-value=2.8e-22 Score=183.98 Aligned_cols=203 Identities=14% Similarity=0.174 Sum_probs=127.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (303)
.++||+|||||++|+++|..|++.|.+|+|+|+....|++.+..|.|+..+........ ...+.++.......+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 45999999999999999999999999999999975444344444444322111100000 00111110000123444
Q ss_pred HHHHHHHHHH-----------HHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 82 QFIEHLDHYV-----------SHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 82 ~l~~~l~~~~-----------~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
.+.++....+ ++. +++. +.++.+. + +..+|...+ .+ +.||+||+||| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~-~------~~~~v~v~~--------~~-~~~d~lViATG--s 143 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARF-E------SPNTVRVGG--------ET-LRAKRIFINTG--A 143 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEE-c------cCCEEEECc--------EE-EEeCEEEEcCC--C
Confidence 5554443332 222 3332 4443321 1 113444432 56 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (303)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~ 229 (303)
.|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ +++|..+.+
T Consensus 144 ~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~ 213 (463)
T PRK06370 144 RAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED 213 (463)
T ss_pred CCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence 8899999997642 2344444433 22357999999999999999999999999999999998 788876655
Q ss_pred HHHHHHhhC
Q 022090 230 LGVVLFKYV 238 (303)
Q Consensus 230 ~~~~~~~~l 238 (303)
+...+.+.|
T Consensus 214 ~~~~l~~~l 222 (463)
T PRK06370 214 VAAAVREIL 222 (463)
T ss_pred HHHHHHHHH
Confidence 555444433
No 21
>PLN02507 glutathione reductase
Probab=99.88 E-value=3.4e-22 Score=184.12 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=132.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEec---------CCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPS 72 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~---------~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 72 (303)
+|||+|||||++|+.+|..|+++|.+|+|+|+ ...+||+| +..|+|+..+.....+. ....+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 34578865 55667655442221110 001111110
Q ss_pred CCCCCCCHHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090 73 SYPMFVSRAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (303)
Q Consensus 73 ~~~~~~~~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (303)
......+..++.+++...++ ..+++ ....++..++. ..+.|...++ +..+ +.||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~----~~v~V~~~~g-----~~~~-~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGP----NEVEVTQLDG-----TKLR-YTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecC----CEEEEEeCCC-----cEEE-EEcCEE
Confidence 00012344455544433322 22332 22233444432 3466766543 2246 899999
Q ss_pred EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (303)
Q Consensus 142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~ 221 (303)
|+||| +.|..|.+||.+.. .++.+... ....+++++|||+|.+|+|+|..+.+.|.+||+++|.+ .
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 78888889886432 22222222 12347899999999999999999999999999999998 6
Q ss_pred eeehhhHHHHHHHHhhCCH
Q 022090 222 VLSREMVYLGVVLFKYVPF 240 (303)
Q Consensus 222 ~lp~~~~~~~~~~~~~l~~ 240 (303)
+++..+.++...+.+.|..
T Consensus 238 ~l~~~d~~~~~~l~~~l~~ 256 (499)
T PLN02507 238 PLRGFDDEMRAVVARNLEG 256 (499)
T ss_pred cCcccCHHHHHHHHHHHHh
Confidence 7777666666555554433
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.88 E-value=9.4e-22 Score=179.48 Aligned_cols=199 Identities=19% Similarity=0.235 Sum_probs=127.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCc-CCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF 83 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 83 (303)
.+||+|||||++|+++|..|+++|.+|+|+|+.+ .+||+|.+ .+.+...+..... . ..++.. ....+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~--~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------Q--HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc------c--CCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999976 47887643 3333221100000 0 000000 0011222
Q ss_pred HHHHHH-----HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090 84 IEHLDH-----YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (303)
Q Consensus 84 ~~~l~~-----~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g 158 (303)
.++++. ..+..+++. . ..++..++ .+.+.|...++ + .+ +.||+||+||| +.|..|++||
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~--~-~g~~~~i~----~~~~~v~~~~g-----~-~~-~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDV--I-DGQAEFIN----NHSLRVHRPEG-----N-LE-IHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEE--E-EEEEEEec----CCEEEEEeCCC-----e-EE-EEeCEEEEcCC--CcCCCCCCCC
Confidence 233321 111113321 2 22344442 23466665442 1 46 89999999999 7888899999
Q ss_pred ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhhC
Q 022090 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV 238 (303)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~l 238 (303)
.+.+ .+ ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|++ .++|..+.++...+.+.|
T Consensus 139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l~~~l 209 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADNIATIL 209 (441)
T ss_pred ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHHHHHHH
Confidence 8654 43 344443333 33457899999999999999999999999999999988 788877666655544443
No 23
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=4.5e-22 Score=166.28 Aligned_cols=229 Identities=17% Similarity=0.163 Sum_probs=157.0
Q ss_pred CCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc----ccCCCCCCCCCCCCC
Q 022090 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMF 77 (303)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 77 (303)
.....+|.++||||..|+++|+++++.|.++.++|..-.+||++ +..|.|...+-....+ ....++.|+.....-
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 33457999999999999999999999999999999987788755 4455555443322221 122233344433333
Q ss_pred CCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
.+|..+.+.-..++.+++ +-.....+..|.-++-. ...+...|...++ .... |+++++++||| ++|.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~ 167 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPII 167 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCC
Confidence 456666666666665542 11111222233322211 1223455655554 2256 89999999999 99999
Q ss_pred CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (303)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~ 233 (303)
|++||.+.- +.+..+.+ ....|+|++|||+|++|+|+|..++.+|.+++++.|.+ .+|..++..++..
T Consensus 168 PnIpG~E~g----------idSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~ 235 (478)
T KOG0405|consen 168 PNIPGAELG----------IDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDL 235 (478)
T ss_pred CCCCchhhc----------cccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHH
Confidence 999997743 66666655 55678999999999999999999999999999999999 7888888877777
Q ss_pred HHhhCCHHHHHHHHHHHH
Q 022090 234 LFKYVPFGWVDTLMVMLS 251 (303)
Q Consensus 234 ~~~~l~~~~~~~~~~~~~ 251 (303)
+.+.|..+.++...++..
T Consensus 236 v~~~~~~~ginvh~~s~~ 253 (478)
T KOG0405|consen 236 VTEHLEGRGINVHKNSSV 253 (478)
T ss_pred HHHHhhhcceeecccccc
Confidence 777776666655444433
No 24
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.87 E-value=2.7e-22 Score=184.16 Aligned_cols=207 Identities=17% Similarity=0.207 Sum_probs=129.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC-cCCCCceEEecCcccccCCCC-CCCCC-CCCCCCHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLPHL-PFPSS-YPMFVSRAQFI 84 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~ 84 (303)
+||+||||||+|+++|..|+++|.+|+|+|++. +||+|. ..|.|+..+........+... .+... .....+...+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999986 677654 344443322211111111000 00000 00112333333
Q ss_pred HHHH------------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 85 EHLD------------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 85 ~~l~------------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
.+.+ ..+++++++. ..+ ++..+ +..+|.+.++ + .. +.+|+||+||| +.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g-----~-~~-~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLG-----R-EV-RGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCC-----e-EE-EEeCEEEEcCC--CCCC
Confidence 3322 2233444432 222 22221 1245555432 1 46 78999999999 7888
Q ss_pred CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHH
Q 022090 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (303)
Q Consensus 153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~ 232 (303)
.|++||.+.+ .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+.++..
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~ 211 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALA-LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA 211 (463)
T ss_pred CCCCCCcccC--------ceECchhhhC-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence 9999997653 2344444333 22346899999999999999999999999999999998 788877666665
Q ss_pred HHHhhCCHHHH
Q 022090 233 VLFKYVPFGWV 243 (303)
Q Consensus 233 ~~~~~l~~~~~ 243 (303)
.+.+.|....+
T Consensus 212 ~l~~~l~~~gV 222 (463)
T TIGR02053 212 AVEEALAEEGI 222 (463)
T ss_pred HHHHHHHHcCC
Confidence 55544433333
No 25
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.87 E-value=5.8e-22 Score=180.86 Aligned_cols=198 Identities=14% Similarity=0.165 Sum_probs=125.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccc----ccCCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (303)
+|||+||||||+|+++|..++++|.+|+|+|+. .+||++ +..|.|+..+...... ..++.+..... ..-.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999995 577754 4455555432111111 01111111000 0012222
Q ss_pred H-----------HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 82 Q-----------FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 82 ~-----------l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
. +.++++..++..+++. . ..++..++.. ...+. .++ .. +.||+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~-~g~~~~v~~~----~v~v~-~~g-------~~-~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL--L-EGRARLVGPN----TVEVL-QDG-------TT-YTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EEEEEEecCC----EEEEe-cCC-------eE-EEcCEEEEecC--Cc
Confidence 2 2333344444555543 3 2355555322 23332 121 56 89999999999 88
Q ss_pred CCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHH
Q 022090 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (303)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~ 230 (303)
|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+++.|.+|+++++.+ .++|..+.++
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~ 209 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDM 209 (446)
T ss_pred CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHH
Confidence 888889886532 22222221 12347899999999999999999999999999999998 6777665555
Q ss_pred HHHHHh
Q 022090 231 GVVLFK 236 (303)
Q Consensus 231 ~~~~~~ 236 (303)
...+.+
T Consensus 210 ~~~l~~ 215 (446)
T TIGR01424 210 RALLAR 215 (446)
T ss_pred HHHHHH
Confidence 544443
No 26
>PRK06116 glutathione reductase; Validated
Probab=99.87 E-value=1.2e-21 Score=179.24 Aligned_cols=198 Identities=21% Similarity=0.227 Sum_probs=125.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc-C----CCCCCCCCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ-L----PHLPFPSSYPMFVS 79 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~ 79 (303)
..+||+|||||++|+++|..|+++|.+|+|+|+. .+||+| +..|.|+..+........ + +.+.+... ....+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcC
Confidence 3589999999999999999999999999999996 577755 444555432211111100 0 00000000 01123
Q ss_pred HHHHHHHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 80 RAQFIEHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 80 ~~~l~~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
...+.++.. +..+..+++. +.+ +++.++ ..+|.+ ++ .+ +.||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG-- 140 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG-- 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--
Confidence 333333322 2233345443 333 344432 134555 32 57 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
+.|..|++||.+.. +++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .+++..+.
T Consensus 141 s~p~~p~i~g~~~~----------~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~ 208 (450)
T PRK06116 141 GRPSIPDIPGAEYG----------ITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP 208 (450)
T ss_pred CCCCCCCCCCccee----------EchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH
Confidence 78888999886532 33333332 22346899999999999999999999999999999998 66776555
Q ss_pred HHHHHHHhh
Q 022090 229 YLGVVLFKY 237 (303)
Q Consensus 229 ~~~~~~~~~ 237 (303)
.+...+.+.
T Consensus 209 ~~~~~l~~~ 217 (450)
T PRK06116 209 DIRETLVEE 217 (450)
T ss_pred HHHHHHHHH
Confidence 555444443
No 27
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.87 E-value=3.2e-21 Score=175.86 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=122.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCcc-CcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIW-KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (303)
++||+|||||++|+++|..|++.|.+|+|+|+++. +||++ +..+.|...+..... . ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--------CCCHHHHH
Confidence 58999999999999999999999999999999864 57753 433333222111110 0 01222333
Q ss_pred HHHH-----------HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 85 EHLD-----------HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 85 ~~l~-----------~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
.+.. +.....+++. ..+ +...+ + ..+|....+. +..+ +.||+||+||| +.|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g-~~~~~--~----~~~v~v~~~~----~~~~-~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDA-EAHFV--S----NKVIEVQAGD----EKIE-LTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEc--c----CCEEEEeeCC----CcEE-EEcCEEEEeCC--CCCCC
Confidence 3222 2223333332 222 22111 1 1234443321 1156 89999999999 77888
Q ss_pred CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (303)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~ 233 (303)
|++||.+.. . .++++.+... ....+++++|||+|.+|+|+|..+++.|.+||+++|++ +++|..+..+...
T Consensus 133 p~i~G~~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~ 203 (438)
T PRK07251 133 LPIPGLADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAAL 203 (438)
T ss_pred CCCCCcCCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHH
Confidence 999997543 2 2344443333 22357899999999999999999999999999999998 7888766555544
Q ss_pred HHh
Q 022090 234 LFK 236 (303)
Q Consensus 234 ~~~ 236 (303)
+.+
T Consensus 204 ~~~ 206 (438)
T PRK07251 204 AKQ 206 (438)
T ss_pred HHH
Confidence 443
No 28
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=1.4e-21 Score=179.59 Aligned_cols=211 Identities=19% Similarity=0.199 Sum_probs=129.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-C---CCCCCCCCCCCCCCH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSR 80 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 80 (303)
..|||+|||||++|+++|..|+++|.+|+|+|+. .+||+|.+ .|.|+..+......+. . ..+..... ....+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 80 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDF 80 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence 3689999999999999999999999999999996 67887743 4444432211111100 0 00000000 001233
Q ss_pred HHHHHH-------HH----HHHHHcCCCceeEeCeEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090 81 AQFIEH-------LD----HYVSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (303)
Q Consensus 81 ~~l~~~-------l~----~~~~~~~l~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG 146 (303)
..+.++ +. ...++.+++. +...++.++.. +..+.+.|...++ +..+ +.||+||+|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~---~~g~a~~i~~~~~~~~~~~~~v~~~~g-----~~~~-~~~d~lViATG 151 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKIDV---FHGIGRILGPSIFSPMPGTVSVETETG-----ENEM-IIPENLLIATG 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEeCCCCCcCCceEEEEEeCCC-----ceEE-EEcCEEEEeCC
Confidence 333333 22 2233345442 33455555443 1123566766543 1257 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090 147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (303)
Q Consensus 147 ~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~ 225 (303)
+.|..+ |+.+ + .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++|.
T Consensus 152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~ 218 (472)
T PRK05976 152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT 218 (472)
T ss_pred --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence 666543 3322 1 222 344443332 22347899999999999999999999999999999998 78888
Q ss_pred hhHHHHHHHHhhCCH
Q 022090 226 EMVYLGVVLFKYVPF 240 (303)
Q Consensus 226 ~~~~~~~~~~~~l~~ 240 (303)
.+.+++..+.+.|..
T Consensus 219 ~~~~~~~~l~~~l~~ 233 (472)
T PRK05976 219 EDAELSKEVARLLKK 233 (472)
T ss_pred CCHHHHHHHHHHHHh
Confidence 766666555544433
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=99.87 E-value=3.4e-21 Score=181.01 Aligned_cols=209 Identities=16% Similarity=0.160 Sum_probs=131.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCccccc-CCCCC----CCCCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLP----FPSSYPMFVS 79 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~ 79 (303)
..+||+|||||++|+++|..|+++|.+|+|||++ .+||+|.+ .|.|+..+........ ....+ ++.. .....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 174 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTID 174 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC-CCccC
Confidence 3589999999999999999999999999999998 68887754 4555443221111100 00111 1111 11234
Q ss_pred HHHHHHHHHHHHHHcCC-----------CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 80 RAQFIEHLDHYVSHFNI-----------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~~l-----------~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
...+.++.........- .+. .+..++..++ ...+.|...++ +..+ ++||+||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~~----~~~~~v~~~~g-----~~~~-~~~d~lviAtG-- 241 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFKD----DQTLIVRLNDG-----GERV-VAFDRCLIATG-- 241 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEec----CCEEEEEeCCC-----ceEE-EEcCEEEEcCC--
Confidence 55666555443332110 111 1222333332 23466665443 2247 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
+.|.+|++||.+.. ..+++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|. .++|..+.
T Consensus 242 s~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~--~~l~~~d~ 310 (561)
T PRK13748 242 ASPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS--TLFFREDP 310 (561)
T ss_pred CCCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC--ccccccCH
Confidence 78889999997642 1232222211 2234789999999999999999999999999999985 46777666
Q ss_pred HHHHHHHhhCCH
Q 022090 229 YLGVVLFKYVPF 240 (303)
Q Consensus 229 ~~~~~~~~~l~~ 240 (303)
+++..+.+.|..
T Consensus 311 ~~~~~l~~~l~~ 322 (561)
T PRK13748 311 AIGEAVTAAFRA 322 (561)
T ss_pred HHHHHHHHHHHH
Confidence 666655554433
No 30
>PTZ00058 glutathione reductase; Provisional
Probab=99.86 E-value=4.7e-21 Score=177.55 Aligned_cols=213 Identities=17% Similarity=0.210 Sum_probs=130.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (303)
..+||+|||||++|+++|..+++.|.+|+|+|++. +|| |.+..|.|+..+........ ...+.... ..-.+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~--~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT--QFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc--cCccCH
Confidence 35899999999999999999999999999999974 566 45556666554433322211 00111110 011233
Q ss_pred HHHHHHHHHH-----------HHHcCCCceeEeCe-EEEE---EE-----E------eCCCCeEEEEEe---ecCCCCce
Q 022090 81 AQFIEHLDHY-----------VSHFNIGPSIRYQR-SVES---AS-----Y------DEATNMWNVKAS---NLLSPGRE 131 (303)
Q Consensus 81 ~~l~~~l~~~-----------~~~~~l~~~i~~~~-~V~~---i~-----~------~~~~~~~~v~~~---~~~~~~~~ 131 (303)
..+.++..++ .+..+++. ..+. ++.+ +. . ..+++..+|... ...++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence 3333333332 23334432 2222 1111 00 0 001122233210 00011
Q ss_pred eEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc
Q 022090 132 IEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (303)
Q Consensus 132 ~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 211 (303)
.+ ++||+||+||| +.|..|++||.+. ++++.++.... .+++++|||+|.+|+|+|..+.+.|.+
T Consensus 199 -~~-i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~ 262 (561)
T PTZ00058 199 -QV-IEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAE 262 (561)
T ss_pred -cE-EECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCc
Confidence 46 89999999999 8888899998642 24444443322 279999999999999999999999999
Q ss_pred eEEEeecCeeeeehhhHHHHHHHHhhCCHHHH
Q 022090 212 TSLVVRSPVHVLSREMVYLGVVLFKYVPFGWV 243 (303)
Q Consensus 212 vt~~~r~~~~~lp~~~~~~~~~~~~~l~~~~~ 243 (303)
||++++.+ +++|..+.++...+.+.|....+
T Consensus 263 Vtli~~~~-~il~~~d~~i~~~l~~~L~~~GV 293 (561)
T PTZ00058 263 SYIFARGN-RLLRKFDETIINELENDMKKNNI 293 (561)
T ss_pred EEEEEecc-cccccCCHHHHHHHHHHHHHCCC
Confidence 99999998 78887776666655554433333
No 31
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.86 E-value=2.8e-21 Score=177.43 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=130.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-CCCCceEEecCcc----cccCCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (303)
.+||+|||||++|+++|..|++.|.+|+|+|+ ..+||.|.+ .|.|+..+..... ...++.+..+.. ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 48999999999999999999999999999999 678887753 3333321111100 000111111111 1345677
Q ss_pred HHHHHHHHHHHHcCCCc-eeEeC-eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090 82 QFIEHLDHYVSHFNIGP-SIRYQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (303)
Q Consensus 82 ~l~~~l~~~~~~~~l~~-~i~~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g 158 (303)
++.+++++.+..+.... .-.+. ..|.-+.-.. ..+.+++.+ ++ .+ +.||+||+|||+ . +|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~-------~~-~~~d~lIiATGs--~--~p~ipg 147 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NG-------ER-IEAKNIVIATGS--R--VPPIPG 147 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-Cc-------EE-EEeCEEEEeCCC--C--CCCCCC
Confidence 88888777666442111 00000 0111111000 001133444 22 57 899999999994 4 456666
Q ss_pred ccccccCCCCCc-cEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090 159 LCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY 237 (303)
Q Consensus 159 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~ 237 (303)
.+.. .+ .++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ +++|..+.++...+.+.
T Consensus 148 ~~~~------~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~~~~ 219 (460)
T PRK06292 148 VWLI------LGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQAQKI 219 (460)
T ss_pred Cccc------CCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHHHHH
Confidence 5432 22 2333333322 23457999999999999999999999999999999998 78887776666666555
Q ss_pred CCHH
Q 022090 238 VPFG 241 (303)
Q Consensus 238 l~~~ 241 (303)
|...
T Consensus 220 l~~~ 223 (460)
T PRK06292 220 LSKE 223 (460)
T ss_pred Hhhc
Confidence 5444
No 32
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.86 E-value=1.3e-21 Score=180.45 Aligned_cols=215 Identities=14% Similarity=0.173 Sum_probs=134.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCc-cCcCCCCceEEecCccccc-----CCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ-----LPHLPFPS 72 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~-w~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 72 (303)
.|||+||||||+|+++|..|+++|.+|+|+|+.. .+||+ .+..|+|+..+........ ...+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999732 36775 4556666532221111100 0011111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeC----CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 73 ~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
.+.-.+..++.+++...++.++... ....++..++... -.+.++|.+.+... ... +.||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence 0113467788888888776654332 2221111111100 01224455443211 157 89999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090 149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (303)
Q Consensus 149 ~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~ 227 (303)
+.|..|. +||.+.+ .+.+.+... ....+++++|||+|.+|+|+|..|+++|.+||+++++ .+++..+
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d 221 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD 221 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence 7788774 8886532 233333322 2234679999999999999999999999999999874 4667766
Q ss_pred HHHHHHHHhhCCHHHHH
Q 022090 228 VYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 228 ~~~~~~~~~~l~~~~~~ 244 (303)
.+++..+.+.|....++
T Consensus 222 ~~~~~~l~~~l~~~GV~ 238 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTL 238 (499)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 66666655555443333
No 33
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=1e-20 Score=173.41 Aligned_cols=207 Identities=18% Similarity=0.192 Sum_probs=125.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCccccc------CCCCCCCCCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVS 79 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 79 (303)
++||+||||||+|+++|..++++|.+|+|+|+...+||++ +..|.|+..+......+. +..+-.. ...-.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~--~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE--VKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc--ccCccC
Confidence 4899999999999999999999999999999877788864 444555443222111110 0011000 011123
Q ss_pred HHHHHHHHHHHHH-----------HcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 80 RAQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 80 ~~~l~~~l~~~~~-----------~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
..++.++....+. ..+++. ..+. . .+ .. ...+.|...++ +..+ ++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~--~~-~~~v~v~~~~g-----~~~~-~~~d~lVIATG-- 145 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RL--DG-VGKVVVKAEDG-----SETQ-LEAKDIVIATG-- 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EE--cc-CCEEEEEcCCC-----ceEE-EEeCEEEEeCC--
Confidence 3343333332221 222221 2111 1 11 11 23344544332 2247 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcc-EEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090 149 TNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (303)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~ 227 (303)
+.|. .+||.+. .+. ++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..+
T Consensus 146 s~p~--~ipg~~~-------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d 214 (466)
T PRK06115 146 SEPT--PLPGVTI-------DNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTD 214 (466)
T ss_pred CCCC--CCCCCCC-------CCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCC
Confidence 5553 3566532 232 344443333 22357999999999999999999999999999999998 7888766
Q ss_pred HHHHHHHHhhCCHH
Q 022090 228 VYLGVVLFKYVPFG 241 (303)
Q Consensus 228 ~~~~~~~~~~l~~~ 241 (303)
.+....+.+.|...
T Consensus 215 ~~~~~~l~~~l~~~ 228 (466)
T PRK06115 215 TETAKTLQKALTKQ 228 (466)
T ss_pred HHHHHHHHHHHHhc
Confidence 66655555544333
No 34
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=1.6e-20 Score=172.44 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=124.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccc-c----CCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC-Q----LPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 81 (303)
++||+|||||++|+++|..|++.|.+|+|+|++...|.+.+..+.|+..+.....+. . ...+... .....+..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--cCcccCHH
Confidence 589999999999999999999999999999997544444455555543221111110 0 0001000 01123444
Q ss_pred HHHHHHHHHHHHc--CCCceeEeC-eEEEEEEEe---CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090 82 QFIEHLDHYVSHF--NIGPSIRYQ-RSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (303)
Q Consensus 82 ~l~~~l~~~~~~~--~l~~~i~~~-~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~ 155 (303)
.+..+.+...+.. ++.. .+. ..|+.++-. .+...+.|...++ +..+ +.||+||+||| +.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~p~~~- 150 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDG-----GTET-VTFDNAIIATG--SSTRLL- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCC-----CeeE-EEcCEEEEeCC--CCCCCC-
Confidence 4444444332221 1111 111 123333211 1123344443332 2257 89999999999 666543
Q ss_pred CCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHH
Q 022090 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF 235 (303)
Q Consensus 156 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~ 235 (303)
||.+. .+.++.+.+... ....+++++|||+|.+|+|+|..+++.|.+||++++.+ .++|..+.+++..+.
T Consensus 151 -pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l~ 220 (466)
T PRK07818 151 -PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEIA 220 (466)
T ss_pred -CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHHH
Confidence 55432 223344333222 22357899999999999999999999999999999998 888887766666555
Q ss_pred hhCCH
Q 022090 236 KYVPF 240 (303)
Q Consensus 236 ~~l~~ 240 (303)
+.|..
T Consensus 221 ~~l~~ 225 (466)
T PRK07818 221 KQYKK 225 (466)
T ss_pred HHHHH
Confidence 54433
No 35
>PLN02546 glutathione reductase
Probab=99.85 E-value=2.5e-21 Score=179.41 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=129.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC---------CCCCCc-cCcCCCCceEEecCccccc----CCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE---------NCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPS 72 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~---------~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~~ 72 (303)
.|||+|||+|++|+.+|..|+++|.+|+|+|+. ..+||+ .+..|.|+..+........ ...+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999962 345664 4555555544322211111 01111100
Q ss_pred CCCCCCCHHHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090 73 SYPMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (303)
Q Consensus 73 ~~~~~~~~~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (303)
......++..+.++.++ ..+..+++. + ..+++.++. .+|... + .. +.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i-~G~a~~vd~------~~V~v~-G-------~~-~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--I-EGRGKIVDP------HTVDVD-G-------KL-YTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EeEEEEccC------CEEEEC-C-------EE-EECCEE
Confidence 00111334444444333 233334332 2 222333321 234442 2 57 899999
Q ss_pred EEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCee
Q 022090 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (303)
Q Consensus 142 IlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~ 221 (303)
|+||| +.|..|++||.+.. +++.+... ....+++++|||+|.+|+|+|..|++.+.+||++++.+ .
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 88889999986532 23322222 22357899999999999999999999999999999998 7
Q ss_pred eeehhhHHHHHHHHhhCCHHHHH
Q 022090 222 VLSREMVYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 222 ~lp~~~~~~~~~~~~~l~~~~~~ 244 (303)
++|..+.++...+.+.|....++
T Consensus 287 il~~~d~~~~~~l~~~L~~~GV~ 309 (558)
T PLN02546 287 VLRGFDEEVRDFVAEQMSLRGIE 309 (558)
T ss_pred cccccCHHHHHHHHHHHHHCCcE
Confidence 88877666665555544443333
No 36
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.85 E-value=5.1e-21 Score=175.71 Aligned_cols=211 Identities=18% Similarity=0.158 Sum_probs=131.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--------CCCCcc-CcCCCCceEEecCccccc----CCCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSS 73 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--------~~gg~w-~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 73 (303)
++||+|||+|++|+.+|..+++.|.+|+++|+.. .+||+| +..|.|+..+........ ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4899999999999999999999999999999731 467754 556777654433222111 011111000
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-----------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090 74 YPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (303)
Q Consensus 74 ~~~~~~~~~l~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (303)
.....+...+.++..+.+... +++. +.....-++ .....|...++ +... +.||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g-----~~~~-~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKG-----KEKI-YSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCC-----CceE-EEeCEEE
Confidence 001234555555554443332 2221 111111111 12233332222 1257 8999999
Q ss_pred EccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (303)
Q Consensus 143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~ 222 (303)
+||| +.|..|++||.+.. .+++.+... ....+++++|||+|.+|+|+|..|+++|.+||+++| + .+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-cc
Confidence 9999 78889999987432 133333322 223467999999999999999999999999999998 4 67
Q ss_pred eehhhHHHHHHHHhhCCHHHHH
Q 022090 223 LSREMVYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 223 lp~~~~~~~~~~~~~l~~~~~~ 244 (303)
+|..+.+++..+.+.|....++
T Consensus 215 l~~~d~~~~~~l~~~L~~~gV~ 236 (484)
T TIGR01438 215 LRGFDQDCANKVGEHMEEHGVK 236 (484)
T ss_pred ccccCHHHHHHHHHHHHHcCCE
Confidence 7877777776666655544444
No 37
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=1.7e-20 Score=171.74 Aligned_cols=204 Identities=15% Similarity=0.191 Sum_probs=126.9
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCC-CCCCCCHHHH
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQF 83 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l 83 (303)
+|+|||||++|+++|..|++.|.+|+|+|++...|.|.+..|.|+..+........ ...+..+.. .....++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 79999999999999999999999999999987555566666666543322111100 001111000 0112345555
Q ss_pred HHHHHHHHHHc-----------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 84 IEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 84 ~~~l~~~~~~~-----------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
.++..+..++. +++ .+..++..++ .....|...++ ..+ ++||+||+||| +.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~------~~~-~~~d~lviATG--s~p~ 145 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK------EEV-VDAEQFIIAAG--SEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC------cEE-EECCEEEEeCC--CCCC
Confidence 55554443331 221 1122222221 23344544321 147 89999999999 7777
Q ss_pred CCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHH
Q 022090 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (303)
Q Consensus 153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~ 232 (303)
.|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ +++|..+.++..
T Consensus 146 ~~p~~~~~~~--------~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~~ 215 (458)
T PRK06912 146 ELPFAPFDGK--------WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIAH 215 (458)
T ss_pred CCCCCCCCCC--------eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHHH
Confidence 6766664321 2344433332 33347899999999999999999999999999999998 788876666655
Q ss_pred HHHhhC
Q 022090 233 VLFKYV 238 (303)
Q Consensus 233 ~~~~~l 238 (303)
.+.+.|
T Consensus 216 ~l~~~L 221 (458)
T PRK06912 216 ILREKL 221 (458)
T ss_pred HHHHHH
Confidence 554433
No 38
>PRK12831 putative oxidoreductase; Provisional
Probab=99.85 E-value=1.2e-20 Score=172.32 Aligned_cols=170 Identities=22% Similarity=0.276 Sum_probs=120.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||++|+++|..|+++|++|+|||+.+.+||.+.+. ++.+.. +.+++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l--------~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRL--------PKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccC--------CccHHHH
Confidence 46799999999999999999999999999999999888876421 121111 1234666
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+++++++++. ++++.+.. .+...+. ... +.||.||+|||+ +.|+.+++||.+.
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~------~~~-~~~d~viiAtGa-~~~~~l~ipG~~~---- 251 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVGK----------TVTIDEL------LEE-EGFDAVFIGSGA-GLPKFMGIPGENL---- 251 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEECC----------cCCHHHH------Hhc-cCCCEEEEeCCC-CCCCCCCCCCcCC----
Confidence 6677777778665 77775521 1222221 024 579999999995 2577888988653
Q ss_pred CCCCccEEecccCC-------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh
Q 022090 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE 226 (303)
Q Consensus 166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~ 226 (303)
.| ++...++. ......+++|+|||+|++|+|+|..+.++|.+||+++|++...+|..
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~ 321 (464)
T PRK12831 252 ---NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR 321 (464)
T ss_pred ---cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC
Confidence 22 22222221 11234679999999999999999999999999999999875455543
No 39
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.84 E-value=2.6e-20 Score=181.56 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=122.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...+. + |.|-...++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------I---------P~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------I---------PEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------C---------CCCcChHHHHH
Confidence 46899999999999999999999999999999999999886532 1 22223346677
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
...+.++..|+.+ ++++.+. ..+++.+. .. ..||.||+|||+ ..|+.+++||.+.
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl---- 415 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL---- 415 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence 7777777788765 6666541 12333332 33 478999999995 3678888998653
Q ss_pred CCCCccEEecccCCC--------------C-CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090 166 ATGTGEVIHSTQYKN--------------G-KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~--------------~-~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~ 227 (303)
.| ++...++.. . ....+++|+|||+|.+|+|+|..+.+.|++||+++|++...+|...
T Consensus 416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~ 488 (944)
T PRK12779 416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARV 488 (944)
T ss_pred ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccH
Confidence 22 222222210 0 1236799999999999999999999999999999998755566443
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.84 E-value=3.2e-20 Score=170.49 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=123.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC-cCCCCceEEecCccccc----CCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (303)
.+||+|||||++|+++|..|++.|.+|+|+|+ +.+||+|. ..++|+..+......+. ...+..... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 37999999999999999999999999999999 67888764 34555432211111100 000110000 1112344
Q ss_pred HHHHHHHHH-----------HHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 82 QFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 82 ~l~~~l~~~-----------~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+.++.+.. .+..+++. .. .++..++ ...+.+...++ . .+ +.||+||+||| +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~~----~~~~~v~~~~g-----~-~~-~~~d~lVlAtG--~~ 142 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFLD----PGTVLVTGENG-----E-ET-LTAKNIIIATG--SR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC-----c-EE-EEeCEEEEcCC--CC
Confidence 444443332 22334332 22 2222221 23455554332 1 46 89999999999 77
Q ss_pred CCCCCCC-CccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090 151 PFTPDIR-GLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (303)
Q Consensus 151 p~~p~~~-g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~ 229 (303)
|+.|++| +. .+..+++.+........+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.+
T Consensus 143 p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~ 212 (461)
T TIGR01350 143 PRSLPGPFDF---------DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAE 212 (461)
T ss_pred CCCCCCCCCC---------CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHH
Confidence 7777765 22 222233322222223357899999999999999999999999999999998 777776555
Q ss_pred HHHHHHh
Q 022090 230 LGVVLFK 236 (303)
Q Consensus 230 ~~~~~~~ 236 (303)
+...+.+
T Consensus 213 ~~~~~~~ 219 (461)
T TIGR01350 213 VSKVVAK 219 (461)
T ss_pred HHHHHHH
Confidence 5544443
No 41
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.84 E-value=5.1e-20 Score=168.88 Aligned_cols=211 Identities=15% Similarity=0.111 Sum_probs=128.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccc----cCCCCCCCCC--CCCCCCH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPSS--YPMFVSR 80 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~ 80 (303)
++|+|||+|++|+.+|..|+++|.+|+++|++. +||++ +..|.|+..+....... ....+..... .....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 589999999999999999999999999999976 66654 44444443221111000 0000000000 0001233
Q ss_pred HHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 81 AQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 81 ~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
..+.++..+ .++.++++. + ..+++.++...+...+.|...++ +..+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~-~g~~~~~~~~~~~~~v~V~~~~g-----~~~~-~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV--I-AGRGRLIDPGLGPHRVKVTTADG-----GEET-LDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--E-EEEEEEeecccCCCEEEEEeCCC-----ceEE-EecCEEEEcCC--C
Confidence 344433333 334445442 3 33444433111124455655443 1247 89999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHH
Q 022090 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (303)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~ 229 (303)
.|..|+.++.+. ..++++.+..+ ....+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+..
T Consensus 150 ~p~~~p~~~~~~--------~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~ 219 (466)
T PRK07845 150 SPRILPTAEPDG--------ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD 219 (466)
T ss_pred CCCCCCCCCCCC--------ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence 776555443221 12445444433 22346899999999999999999999999999999998 788887666
Q ss_pred HHHHHHhhCCH
Q 022090 230 LGVVLFKYVPF 240 (303)
Q Consensus 230 ~~~~~~~~l~~ 240 (303)
+...+.+.|..
T Consensus 220 ~~~~l~~~L~~ 230 (466)
T PRK07845 220 AAEVLEEVFAR 230 (466)
T ss_pred HHHHHHHHHHH
Confidence 66555554433
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=6.1e-20 Score=168.85 Aligned_cols=209 Identities=14% Similarity=0.172 Sum_probs=125.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEec------CCCCCCccCc-CCCCceEEecC-cccccC----CCCCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKK-YSYDRLRLHLA-KQFCQL----PHLPFPSSY 74 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~------~~~~gg~w~~-~~~~~~~~~~~-~~~~~~----~~~~~~~~~ 74 (303)
.+||+|||||++|+++|..+++.|.+|+|+|+ ...+||+|.+ .+.|+..+... ..+..+ ..+..+..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 58999999999999999999999999999998 3567777654 33343211111 000000 11100000
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 75 PMFVSRAQFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 75 ~~~~~~~~l~~~l~~-----------~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
..-.+...+.++... ..+..+++ ....++..++... +.++|.+....+ .+ ++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence 001233344433222 22233433 2333444454333 357777653211 47 89999999
Q ss_pred ccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeee
Q 022090 144 ASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVL 223 (303)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~l 223 (303)
||| +.|..|+ +.. + .+..++.++........+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++
T Consensus 152 ATG--s~p~~~p--~~~-~------~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l 219 (475)
T PRK06327 152 ATG--SEPRHLP--GVP-F------DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL 219 (475)
T ss_pred eCC--CCCCCCC--CCC-C------CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence 999 6665332 222 1 223233333222223457999999999999999999999999999999998 777
Q ss_pred ehhhHHHHHHHHhhCC
Q 022090 224 SREMVYLGVVLFKYVP 239 (303)
Q Consensus 224 p~~~~~~~~~~~~~l~ 239 (303)
|..+.++...+.+.|.
T Consensus 220 ~~~d~~~~~~~~~~l~ 235 (475)
T PRK06327 220 AAADEQVAKEAAKAFT 235 (475)
T ss_pred CcCCHHHHHHHHHHHH
Confidence 7766555555444433
No 43
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.83 E-value=7.9e-20 Score=166.44 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=120.9
Q ss_pred CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
++|+|||||++|+.+|..|++. +.+|+|+|+++..+ |... .++... . ......+++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~~---------~lp~~~--~--~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FANC---------ALPYYI--G--EVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------cccC---------Ccchhh--c--CccCCHHHccc
Confidence 4899999999999999999887 67999999998643 1110 001100 0 01111222222
Q ss_pred HH-HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 86 ~l-~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
+. ..+.++.+++. +++++|++|+.++ . .|.+.++.++ +..+ +.||+||+||| +.|+.|++++...
T Consensus 62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~--~v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~~--- 127 (438)
T PRK13512 62 YTPEKFYDRKQITV--KTYHEVIAINDER--Q--TVTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDIT--- 127 (438)
T ss_pred CCHHHHHHhCCCEE--EeCCEEEEEECCC--C--EEEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCCe---
Confidence 22 23345566655 8889999998765 3 3444433211 2245 78999999999 7777666543211
Q ss_pred CCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY 237 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~~~~ 237 (303)
+......+. ....+++++|||+|.+|+|+|..|++.|.+||++++++ .+++..+.++...+.+.
T Consensus 128 --------~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~l~~~ 198 (438)
T PRK13512 128 --------FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPILDE 198 (438)
T ss_pred --------EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHHHHHH
Confidence 111111110 11246899999999999999999999999999999998 67776666555555444
Q ss_pred C
Q 022090 238 V 238 (303)
Q Consensus 238 l 238 (303)
|
T Consensus 199 l 199 (438)
T PRK13512 199 L 199 (438)
T ss_pred H
Confidence 3
No 44
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.83 E-value=3.8e-20 Score=169.66 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=130.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecC--------CCCCCc-cCcCCCCceEEecCccccc----CCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFP 71 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~--------~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~ 71 (303)
.+|||+|||+|++|+.+|..++++ |.+|+|+|++ ..+||+ .+..|.|+..+........ ...+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999997 9999999984 457775 4556666544332221111 0111100
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHc--CCCceeEeC--eEEEEEEEeC-CCCeEEEEEeecCCCC-ceeEEEEeeCEEEEc
Q 022090 72 SS-YPMFVSRAQFIEHLDHYVSHF--NIGPSIRYQ--RSVESASYDE-ATNMWNVKASNLLSPG-REIEEYYSGRFLVVA 144 (303)
Q Consensus 72 ~~-~~~~~~~~~l~~~l~~~~~~~--~l~~~i~~~--~~V~~i~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~ad~vIlA 144 (303)
.. ...-.++..+.++.+...+.. +... .+. ..|+-+.-.. -.+..+|......++. .+..+ +.||+||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~--~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~-~~~d~lIIA 158 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEG--MFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKER-LQAEHILLA 158 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHH--HhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceE-EECCEEEEe
Confidence 00 011234555555555443321 0000 010 0122111000 0011334443210000 01257 899999999
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc---cCceEEEeecCee
Q 022090 145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPVH 221 (303)
Q Consensus 145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~---g~~vt~~~r~~~~ 221 (303)
|| +.|..|++||.+.. ..+.+... ....+++++|||+|.+|+|+|..+..+ |.+||++++.+ .
T Consensus 159 TG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~ 224 (486)
T TIGR01423 159 TG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-M 224 (486)
T ss_pred cC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-c
Confidence 99 78888999986532 22222222 223478999999999999999877665 89999999998 7
Q ss_pred eeehhhHHHHHHHHhhCCHHHHH
Q 022090 222 VLSREMVYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 222 ~lp~~~~~~~~~~~~~l~~~~~~ 244 (303)
++|..+.+++..+.+.|....++
T Consensus 225 il~~~d~~~~~~l~~~L~~~GI~ 247 (486)
T TIGR01423 225 ILRGFDSTLRKELTKQLRANGIN 247 (486)
T ss_pred cccccCHHHHHHHHHHHHHcCCE
Confidence 88887777776666655444433
No 45
>PRK07846 mycothione reductase; Reviewed
Probab=99.83 E-value=4.7e-20 Score=168.25 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=124.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (303)
+|||+|||+|++|.++|..+ .|.+|+|+|++...|.|.+..|.|+..+........ .+.+..... ....++.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 77 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD 77 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence 38999999999999988764 599999999976444455666666554322221111 011111000 11235667
Q ss_pred HHHHHHHHHHHcCCC-ceeE-eC-eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCC
Q 022090 83 FIEHLDHYVSHFNIG-PSIR-YQ-RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (303)
Q Consensus 83 l~~~l~~~~~~~~l~-~~i~-~~-~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g 158 (303)
+.++.....++..-. .... +. ..|+-+.-.. -.+..+|.+.++ .+ ++||+||+||| +.|..|++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p~i~g 147 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIPPVIA 147 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCCCCCC
Confidence 777766655443110 0001 10 1111111000 002245666543 46 89999999999 8888999988
Q ss_pred ccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHHH
Q 022090 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL 234 (303)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~~ 234 (303)
.+.. .+..+.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|++ .++|..+.++...+
T Consensus 148 ~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l 213 (451)
T PRK07846 148 DSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERF 213 (451)
T ss_pred cCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHH
Confidence 5432 1222222222 22357899999999999999999999999999999998 67776665554433
No 46
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.83 E-value=1.1e-19 Score=166.24 Aligned_cols=184 Identities=17% Similarity=0.297 Sum_probs=120.7
Q ss_pred cEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+|+|||||++|+++|..|++.+ .+|+|||+++..+ |.. +.++... + ..+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~--------------~~~~~~~-~---~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA--------------CGLPYFV-G---GFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec--------------CCCceEe-c---cccCCHHHhhcC
Confidence 7999999999999999999875 5899999988643 110 0001100 0 011122334444
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
..+.+++.+++. +++++|++++.++ . .|.+.+..++ .. +. ||+||+||| +.|..|.+||.+.
T Consensus 62 ~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lviAtG--~~~~~~~i~g~~~--- 125 (444)
T PRK09564 62 TPEEFIKSGIDV--KTEHEVVKVDAKN--K--TITVKNLKTG----SI-FNDTYDKLMIATG--ARPIIPPIKNINL--- 125 (444)
T ss_pred CHHHHHHCCCeE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EEecCCEEEECCC--CCCCCCCCCCcCC---
Confidence 445556667654 7889999998765 3 3444331111 33 45 999999999 7788888888753
Q ss_pred CCCCCccEEecccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHH
Q 022090 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVL 234 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~ 234 (303)
. .+++...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|. .+.++...+
T Consensus 126 ----~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~l 197 (444)
T PRK09564 126 ----E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDVM 197 (444)
T ss_pred ----C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHHH
Confidence 1 23333322111 11346899999999999999999999999999999988 66663 333444333
No 47
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.83 E-value=4.2e-20 Score=173.50 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=130.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CCCCCc-cCcCCCCceEEecCccc------------ccCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASI-WKKYSYDRLRLHLAKQF------------CQLPHLPFP 71 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~~gg~-w~~~~~~~~~~~~~~~~------------~~~~~~~~~ 71 (303)
..|||+|||+|++|+.+|..++++|.+|+|||++ ..+||+ .+..|.|+..+...... +.+....+|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3689999999999999999999999999999975 356774 44555554432211111 011100000
Q ss_pred --------CC----CCCCCCHHHHHHHHHHHHHHcC--CCc-----eeEeCeEEEEEEEeCC--CCeEEEEEeecCCCCc
Q 022090 72 --------SS----YPMFVSRAQFIEHLDHYVSHFN--IGP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGR 130 (303)
Q Consensus 72 --------~~----~~~~~~~~~l~~~l~~~~~~~~--l~~-----~i~~~~~V~~i~~~~~--~~~~~v~~~~~~~~~~ 130 (303)
.. .....++..+.++.+...+... +.. .+...++...+..... .+..+|..... +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~--g-- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKS--G-- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccC--C--
Confidence 00 0112366777777776655431 110 0011111222222110 01122333211 1
Q ss_pred eeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccC
Q 022090 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (303)
Q Consensus 131 ~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 210 (303)
.+ +.||+||+||| +.|..|++++.+.. .++++.+... ....+++++|||+|.+|+|+|..+.++|.
T Consensus 271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~ 336 (659)
T PTZ00153 271 --KE-FKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS 336 (659)
T ss_pred --EE-EECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence 57 89999999999 78887776554321 2444433322 22347899999999999999999999999
Q ss_pred ceEEEeecCeeeeehhhHHHHHHHHhh
Q 022090 211 KTSLVVRSPVHVLSREMVYLGVVLFKY 237 (303)
Q Consensus 211 ~vt~~~r~~~~~lp~~~~~~~~~~~~~ 237 (303)
+||++++.+ .++|..+.+++..+.+.
T Consensus 337 eVTLIe~~~-~ll~~~d~eis~~l~~~ 362 (659)
T PTZ00153 337 EVVSFEYSP-QLLPLLDADVAKYFERV 362 (659)
T ss_pred eEEEEeccC-cccccCCHHHHHHHHHH
Confidence 999999999 78887777666655553
No 48
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.83 E-value=1.7e-19 Score=161.47 Aligned_cols=169 Identities=20% Similarity=0.328 Sum_probs=117.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
++|+|||||+||+.+|..|++. ..+|+|+++++... |....+ +..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--------------~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--------------SHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--------------cHHHhCCCCHHHhhc
Confidence 5899999999999999999886 45899999987421 211100 000111122234443
Q ss_pred H-HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 86 H-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 86 ~-l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
+ ..+++++++++. +++++|++++.+. +.|...+ .. +.||+||+||| +.|..|++||.+..
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~~--------~~-~~yd~LVlATG--~~~~~p~i~G~~~v-- 122 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQG--------NQ-WQYDKLVLATG--ASAFVPPIPGRELM-- 122 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEECC--------eE-EeCCEEEECCC--CCCCCCCCCCCceE--
Confidence 2 455667777665 7889999998755 4555432 56 89999999999 77888889886431
Q ss_pred CCCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~ 225 (303)
++.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++++
T Consensus 123 --------~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~ 179 (377)
T PRK04965 123 --------LTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLAS 179 (377)
T ss_pred --------EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccch
Confidence 22211111 111246899999999999999999999999999999998 66655
No 49
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.82 E-value=9.9e-20 Score=166.03 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=113.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+. ++.+ ....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~~---------~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPEF---------RLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCCc---------cCCHHHHH
Confidence 45799999999999999999999999999999998888876421 1111 11135555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
...+.++..+++. ++++.+ . ..+.+.+ .. ..||+||+|||+ +.|..|++||.+.
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v------~----~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~---- 241 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLV------G----KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL---- 241 (449)
T ss_pred HHHHHHHhCCcEE--EeCCcc------C----CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence 5555666667654 666543 1 1233322 23 468999999995 2678888888653
Q ss_pred CCCCccEEecccCC--------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (303)
Q Consensus 166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~ 220 (303)
.+ +++..++. ......+++|+|||+|++|+|+|..+.+.|.+||+++|++.
T Consensus 242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 22 23322221 11123579999999999999999999999999999999874
No 50
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.82 E-value=4.1e-21 Score=168.57 Aligned_cols=208 Identities=19% Similarity=0.220 Sum_probs=139.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (303)
+++|||||||++|+.+|..|.+.. .+++++|+++..- +..+.. +-.....+..++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL~---------------eva~g~l~~~~i~ 60 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLLY---------------EVATGTLSESEIA 60 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhhh---------------hhhcCCCChhhee
Confidence 468999999999999999999974 8999999987521 111110 0111223334445
Q ss_pred HHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090 85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (303)
Q Consensus 85 ~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~ 163 (303)
.-++..++..+ ++ ....+|++|+.+. .+|.+.+. .. +.||+||+|+| +.+..+.+||..+++
T Consensus 61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~a 123 (405)
T COG1252 61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEYA 123 (405)
T ss_pred ccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHhC
Confidence 55566655443 22 4567899998877 66777763 46 89999999999 888888899976652
Q ss_pred -------cCCCCCccEEecccCCC-CCC-CCCCeEEEECCCccHHHHHHHHhhccC-------------ceEEEeecCee
Q 022090 164 -------SSATGTGEVIHSTQYKN-GKP-YGGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPVH 221 (303)
Q Consensus 164 -------~~~~~~g~~~~~~~~~~-~~~-~~~~~v~ViG~G~~g~e~a~~l~~~g~-------------~vt~~~r~~~~ 221 (303)
++.++..++....+..+ ... ..-.+++|+|+|++|+|+|.+|+++.. +|+++++.| .
T Consensus 124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ 202 (405)
T COG1252 124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-R 202 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-h
Confidence 00011111110000001 000 012379999999999999999997643 899999999 9
Q ss_pred eeehhhHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 022090 222 VLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLV 254 (303)
Q Consensus 222 ~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 254 (303)
+||.+..+++...++.|.+..++..++..+..+
T Consensus 203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v 235 (405)
T COG1252 203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEV 235 (405)
T ss_pred hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEE
Confidence 999988888887777777777766655544443
No 51
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.82 E-value=7.6e-20 Score=154.86 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=150.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc-CcCCCCceEEecCcccccCCCC-CCC----CCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQLPHL-PFP----SSYPMFVS 79 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~ 79 (303)
..+||+|||+||+|..+|.++++.|++.+++|++..+||++ +..|.|+..+.....+++.... .+. +-.+.-.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46899999999999999999999999999999999999865 4455555444333333322111 000 01122334
Q ss_pred HHHHHHHHHHHHHHc--CCCceeEeC-eEEEEEE---EeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 80 RAQFIEHLDHYVSHF--NIGPSIRYQ-RSVESAS---YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~--~l~~~i~~~-~~V~~i~---~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
...+++.....++++ ++.. .|. ..|+-+. .-.+.....+.-.++ +... ++++++|+||| |. +
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~--lfkknkV~~~kG~gsf~~p~~V~v~k~dg-----~~~i-i~aKnIiiATG--Se--V 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIEN--LFKKNKVTYVKGFGSFLDPNKVSVKKIDG-----EDQI-IKAKNIIIATG--SE--V 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhcCeEEEeeeEeecCCceEEEeccCC-----CceE-EeeeeEEEEeC--Cc--c
Confidence 556666666655544 1111 111 1222221 111112233333333 3367 99999999999 42 5
Q ss_pred CCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (303)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~ 233 (303)
+++||++- ++..+-+++-.-....-|++++|||+|.+|+|++.-..++|++||+++-.+ .+.+..+.+++..
T Consensus 186 ~~~PGI~I-------DekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~ 257 (506)
T KOG1335|consen 186 TPFPGITI-------DEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKA 257 (506)
T ss_pred CCCCCeEe-------cCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHH
Confidence 56788754 454454554444466779999999999999999999999999999999999 8999988899998
Q ss_pred HHhhCCHHHHHHHHHH
Q 022090 234 LFKYVPFGWVDTLMVM 249 (303)
Q Consensus 234 ~~~~l~~~~~~~~~~~ 249 (303)
+++.|.++.+++.+.+
T Consensus 258 ~qr~L~kQgikF~l~t 273 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGT 273 (506)
T ss_pred HHHHHHhcCceeEecc
Confidence 8888887777766554
No 52
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.81 E-value=2.2e-19 Score=161.63 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=111.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
.+|+|||||++|+++|..|++.|. +|+++++++... |....+ +..+.. .+... ..+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~---~~~~~--~~~~~------ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLL---EDSPQ--LQQVL------ 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHC---CCCcc--ccccC------
Confidence 589999999999999999999876 799999987542 221110 000000 00000 00000
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
-.++....+++. +.++.|+.++... ..|.+.++ .+ +.||+||+||| +.|+.+++++...
T Consensus 64 -~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~---- 122 (396)
T PRK09754 64 -PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG---- 122 (396)
T ss_pred -CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC----
Confidence 012233446554 7888899998765 45666554 56 89999999999 6666666554321
Q ss_pred CCCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh
Q 022090 166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~ 225 (303)
. .++......+ .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++++
T Consensus 123 ---~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~ 182 (396)
T PRK09754 123 ---E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGR 182 (396)
T ss_pred ---C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhh
Confidence 1 1222111111 112247899999999999999999999999999999998 66665
No 53
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.81 E-value=2.4e-19 Score=173.35 Aligned_cols=185 Identities=19% Similarity=0.192 Sum_probs=128.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
.+|+|||+|++|+.+|..|.+. +++|+||++++..+ |..+.+... + .. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~~-----~---------~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSSY-----F---------SH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchHh-----H---------cC-CCHHHc
Confidence 5899999999999999999764 47999999998753 433322110 0 00 112333
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~ 163 (303)
......+.+..+++. +.++.|+.++... ..|.+.++ .. +.||+||+||| +.|..|++||.+..
T Consensus 62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~- 124 (847)
T PRK14989 62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ- 124 (847)
T ss_pred cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC-
Confidence 333445556667665 8888999997754 55666553 56 89999999999 88889999997642
Q ss_pred cCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeeh-hhHHHHHHHHhh
Q 022090 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVLFKY 237 (303)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~-~~~~~~~~~~~~ 237 (303)
+ ++......+. ....+++++|||+|.+|+|+|..|.++|.+||++++.+ +++|+ .+...+..+.+.
T Consensus 125 ------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~l~~~ 196 (847)
T PRK14989 125 ------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQLRRK 196 (847)
T ss_pred ------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHHHHHH
Confidence 2 2222111110 12246899999999999999999999999999999998 77775 344555555444
Q ss_pred CC
Q 022090 238 VP 239 (303)
Q Consensus 238 l~ 239 (303)
|.
T Consensus 197 L~ 198 (847)
T PRK14989 197 IE 198 (847)
T ss_pred HH
Confidence 43
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.81 E-value=5.5e-19 Score=170.42 Aligned_cols=170 Identities=25% Similarity=0.323 Sum_probs=116.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||+||+++|..|+++|++|+|||+.+.+||.+++. ++. +....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~---------~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQ---------FRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------ccc---------ccccHHHHH
Confidence 45799999999999999999999999999999999999876531 111 111134455
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+.+...++++ ++++.+ .+..+ +. .. ..||+||+|||+. .+..+.++|.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~le-----------~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTVE-----------QL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEhh-----------hh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 5556666677655 777765 22111 11 34 5689999999953 344456776531
Q ss_pred CCCCccEEecccCCC------CCCCCCCeEEEECCCccHHHHHHHHhhcc--CceEEEeecCeeeeehhhHHHH
Q 022090 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSPVHVLSREMVYLG 231 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~~~~lp~~~~~~~ 231 (303)
.+++..++.. .....+++|+|||+|++|+|+|..+.+.+ .+||+++|++...+|.....+.
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle 715 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYE 715 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHH
Confidence 1222222211 12235899999999999999999998884 4899999998667776554443
No 55
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-18 Score=137.88 Aligned_cols=175 Identities=16% Similarity=0.269 Sum_probs=133.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC----CCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~----~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
.-+|+|||+||++..+|..++++..+.++||--. ..||+. ......-.||. +|+-....+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQL----------tTTT~veNfPG------FPdgi~G~~ 71 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQL----------TTTTDVENFPG------FPDGITGPE 71 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCcee----------eeeeccccCCC------CCcccccHH
Confidence 3489999999999999999999999999999532 223321 11111111222 233345789
Q ss_pred HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCc-cc
Q 022090 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL-CS 161 (303)
Q Consensus 83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~-~~ 161 (303)
+++.+++...++|.+ .+...|.+++... ..|.|.++. +. +.+|.||+|||. ..+...+||. +.
T Consensus 72 l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGA--sAkRl~~pg~ge~ 135 (322)
T KOG0404|consen 72 LMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGA--SAKRLHLPGEGEG 135 (322)
T ss_pred HHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccc--ceeeeecCCCCcc
Confidence 999999999999977 4556788887765 678888865 46 799999999994 4455667765 32
Q ss_pred -cccCCCCCccEEecccCCCCCC--CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 162 -FCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 162 -~~~~~~~~g~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
| ..+-+.++..++... +++|..+|||+|-+|+|-|..|...+++|++++|++
T Consensus 136 ~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd 190 (322)
T KOG0404|consen 136 EF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRD 190 (322)
T ss_pred hH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhh
Confidence 5 566677888887544 789999999999999999999999999999999999
No 56
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.80 E-value=2.7e-19 Score=172.91 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=124.0
Q ss_pred EEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
|+|||+|++|+.+|..|++. +++|+||++.+..+ |..+.+. . ......+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~---------~-----~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLS---------S-----VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------ccccccc---------H-----HHCCCCCHHHccCC
Confidence 68999999999999998875 46999999998753 3222110 0 00111122333333
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..++.++.+++. +++++|++++... +.|.+.++ .+ +.||+||+||| +.|+.|++||.+.
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~----- 118 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADK----- 118 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCC-----
Confidence 344556667665 8899999998765 56777654 56 89999999999 7888999999764
Q ss_pred CCCccEEecccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehh-hHHHHHHHHh
Q 022090 167 TGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFK 236 (303)
Q Consensus 167 ~~~g~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~-~~~~~~~~~~ 236 (303)
.+ ++......+ .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ +++++. +...+..+.+
T Consensus 119 --~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~l~~ 190 (785)
T TIGR02374 119 --KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRLLQR 190 (785)
T ss_pred --CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHHHHH
Confidence 22 222221111 011246899999999999999999999999999999998 676653 2333433333
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=5.7e-19 Score=170.57 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=117.9
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||+||+++|..|+++|++|+|||+.+.+||.+.+. ++.+..| .++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~rlp---------~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFRLP---------KKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCCCC---------HHHHH
Confidence 45799999999999999999999999999999998888876432 1221111 24555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
...+.++++++++ ++++.+. ..+.+.+. .. ..||.||+|||+ +.|+.+++||.+.
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~---- 540 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS---- 540 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence 5556666777655 6666441 11222221 34 569999999995 2577888888653
Q ss_pred CCCCccEEecccCC-------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecCeeeeehhh
Q 022090 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREM 227 (303)
Q Consensus 166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~~~~lp~~~ 227 (303)
.| +++..++. ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|...
T Consensus 541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~ 612 (752)
T PRK12778 541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARL 612 (752)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 12 23322211 11224579999999999999999999999987 9999998755566543
No 58
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.79 E-value=5.9e-19 Score=161.62 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=117.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... ++ .+....++.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip---------~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IP---------EFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CC---------CccCCHHHHH
Confidence 45799999999999999999999999999999999888875431 11 1111236667
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+.++.++++. ++++.+.. .+.+.+ .. +.||+||+|||+ ..|..+.+||.+.
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa-~~~~~~~i~G~~~---- 248 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGA-GLPRFLGIPGENL---- 248 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCC-CCCCCCCCCCccC----
Confidence 7777777777655 67765511 112222 23 578999999995 2466667887653
Q ss_pred CCCCccEEecccCCC--------CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehh
Q 022090 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSRE 226 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~ 226 (303)
.+ +++..++.. .....+++|+|||+|.+|+|+|..+.+.|. +||+++|++...+|..
T Consensus 249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~ 314 (457)
T PRK11749 249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS 314 (457)
T ss_pred ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence 22 233222211 112358999999999999999999999987 8999999875556553
No 59
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-18 Score=144.35 Aligned_cols=219 Identities=19% Similarity=0.232 Sum_probs=147.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEec--CCCCCCccCc-------CCCCceEEecCc----ccccCCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKK-------YSYDRLRLHLAK----QFCQLPHLPFPS 72 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~--~~~~gg~w~~-------~~~~~~~~~~~~----~~~~~~~~~~~~ 72 (303)
..||++|||||.+||+||++++..|.+|.++|- -...|..|.- .+.|...++... .+.....+.|..
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~ 97 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV 97 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 468999999999999999999999999999984 2235555643 222222111110 000111111221
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCC----eEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 73 SY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN----MWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 73 ~~-~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
.. .--+++..+.+..++.++..++-.++.++. ..+...+.-+ ..++...+..+ +.+. ++++.+++|||
T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIatG- 170 (503)
T KOG4716|consen 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIATG- 170 (503)
T ss_pred ccccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEEec-
Confidence 11 234578899999999998887665333332 2222222112 23344333221 3366 89999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh
Q 022090 148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (303)
Q Consensus 148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~ 227 (303)
.+|+.|++||...+ .+.|.+... ..+.+.+.+|||+|++|+|+|..|+..|.+||++.|+- +|..++
T Consensus 171 -~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFD 237 (503)
T KOG4716|consen 171 -LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFD 237 (503)
T ss_pred -CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--eccccc
Confidence 89999999997765 366666555 66678888999999999999999999999999999984 777777
Q ss_pred HHHHHHHHhhCCHHHHH
Q 022090 228 VYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 228 ~~~~~~~~~~l~~~~~~ 244 (303)
.+++..+...|....+.
T Consensus 238 qdmae~v~~~m~~~Gik 254 (503)
T KOG4716|consen 238 QDMAELVAEHMEERGIK 254 (503)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 78877776666554444
No 60
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.78 E-value=1.3e-18 Score=159.03 Aligned_cols=204 Identities=14% Similarity=0.167 Sum_probs=118.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCccccc----CCCCCCCCCCCCCCCHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (303)
+|||+|||+|++|..+|.. .+|.+|+++|++...|.|.+..|.|+..+........ ...+..... ....++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHHH
Confidence 5899999999999998654 4699999999965444455666666654432222111 111111100 11235666
Q ss_pred HHHHHHH-HHHHc-CCCceeEeC---eEEEEEEEeC-CCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC
Q 022090 83 FIEHLDH-YVSHF-NIGPSIRYQ---RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (303)
Q Consensus 83 l~~~l~~-~~~~~-~l~~~i~~~---~~V~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~ 156 (303)
++++... ..+.. ......... ..|+-+.-.. -.+.++|.+.++ .+ ++||+||+||| +.|..|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g-------~~-~~~d~lIiATG--s~p~~p~~ 148 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG-------EE-ITGDQIVIAAG--SRPYIPPA 148 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC-------cE-EEeCEEEEEEC--CCCCCCCC
Confidence 6666544 22221 000000100 1111111000 012356666543 46 89999999999 77877764
Q ss_pred CCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090 157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (303)
Q Consensus 157 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~ 233 (303)
.+.... .+..+.+... ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++|..+.++...
T Consensus 149 ~~~~~~--------~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~ 215 (452)
T TIGR03452 149 IADSGV--------RYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDR 215 (452)
T ss_pred CCCCCC--------EEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCHHHHHH
Confidence 332111 1222222222 22347899999999999999999999999999999998 5777655555433
No 61
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.78 E-value=3.5e-19 Score=161.55 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=123.9
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
.+++|||||||++|+.+|+.|...+++|+|||+++..- |..+ .+.......+.+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 46799999999999999999987789999999887421 1100 0000011122334444
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeec-----CCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcc
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL-----LSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~ 160 (303)
.+...++.++.. ....+|++|+.++ ..+.+...+. .++ .+ +.||+||+||| +.|..|.+||.+
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g----~~-i~yD~LViAtG--s~~~~~~ipG~~ 134 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNT----FS-VPYDKLVVAHG--ARPNTFNIPGVE 134 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCCc----eE-ecCCEEEECCC--cccCCCCCCCHH
Confidence 455555555543 4567899998765 4444422111 111 57 89999999999 777888888865
Q ss_pred ccccCCCCCccEEecccC----------C---CC---CCCCCCeEEEECCCccHHHHHHHHhhc--------------cC
Q 022090 161 SFCSSATGTGEVIHSTQY----------K---NG---KPYGGKNVLVVGSGNSGMEIALDLANH--------------AA 210 (303)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~----------~---~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~--------------g~ 210 (303)
... ...+. +-+.... . .. .....++++|||+|.+|+|+|..|++. +.
T Consensus 135 e~~--~~~~~-~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~ 211 (424)
T PTZ00318 135 ERA--FFLKE-VNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEEC 211 (424)
T ss_pred HcC--CCCCC-HHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence 320 00000 0000000 0 00 011235899999999999999999863 67
Q ss_pred ceEEEeecCeeeeehhhHHHHHHHHhhCCHHHHH
Q 022090 211 KTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVD 244 (303)
Q Consensus 211 ~vt~~~r~~~~~lp~~~~~~~~~~~~~l~~~~~~ 244 (303)
+||++++.+ .++|..+..++..+.+.|....++
T Consensus 212 ~Vtlv~~~~-~ll~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 212 KVTVLEAGS-EVLGSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred EEEEEcCCC-cccccCCHHHHHHHHHHHHHCCCE
Confidence 899999998 777766555555555544443343
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=164.92 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=117.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||++|+++|..|++.|++|++||+.+.+||.|... ++. +....++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPR---------FRLPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCC---------CCCCHHHHH
Confidence 34799999999999999999999999999999999999987532 111 111234555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+.+..++++. ++++.+. . .+...+ .. ..||.||+|||+. .+..+++||.+.
T Consensus 248 ~~~~~l~~~Gv~i--~~~~~v~-~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~---- 301 (652)
T PRK12814 248 ADIAPLRAMGAEF--RFNTVFG-R---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL---- 301 (652)
T ss_pred HHHHHHHHcCCEE--EeCCccc-C---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence 6666667777654 6666441 1 111221 22 4589999999952 234567888653
Q ss_pred CCCCccEEecccCC-----CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhHHH
Q 022090 166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMVYL 230 (303)
Q Consensus 166 ~~~~g~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~~~ 230 (303)
.+ ++...++. ......+++|+|||+|++|+|+|..+.+.|. +||+++|++...||....++
T Consensus 302 ---~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei 368 (652)
T PRK12814 302 ---PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI 368 (652)
T ss_pred ---CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH
Confidence 22 22222221 1123468999999999999999999999986 59999999855677654433
No 63
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.78 E-value=3.2e-18 Score=155.57 Aligned_cols=166 Identities=19% Similarity=0.160 Sum_probs=111.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhh--CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
.+++|+||||||||+++|..|++ .|++|+|||+.+.+||.+++..- |.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence 35789999999999999999987 69999999999999987664310 222333456
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~ 163 (303)
...+.+.++..++.+ +.+..+. ..+...+ -. ..||.||+|||+. .++.+.+||.+.
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~-- 137 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL-- 137 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence 666666666655543 5554441 1122222 23 4689999999952 235667888653
Q ss_pred cCCCCCccEEecccCC----------C--CCCCCCCeEEEECCCccHHHHHHHHhhc--------------------c-C
Q 022090 164 SSATGTGEVIHSTQYK----------N--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A 210 (303)
Q Consensus 164 ~~~~~~g~~~~~~~~~----------~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~ 210 (303)
.| ++...++. . .....+++++|||+|++|+|+|..|.+. + .
T Consensus 138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 22 22222221 0 0123579999999999999999998875 4 4
Q ss_pred ceEEEeecCeeeee
Q 022090 211 KTSLVVRSPVHVLS 224 (303)
Q Consensus 211 ~vt~~~r~~~~~lp 224 (303)
+|+++.|+...-++
T Consensus 212 ~V~iv~RRg~~~~~ 225 (491)
T PLN02852 212 KVYLVGRRGPVQAA 225 (491)
T ss_pred EEEEEEcCChHhCC
Confidence 69999999843333
No 64
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.4e-18 Score=144.23 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=138.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..|||+||||||+|-++|...+++|++.-++- ..+||+-.. .+.+. .|-.. .+....++..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvld----T~~IE------NfIsv-------~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLD----TMGIE------NFISV-------PETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecc----ccchh------heecc-------ccccchHHHH
Confidence 46899999999999999999999999886553 235554221 11110 00111 1234568899
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCC-CCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
.+.+.+++|.++. ....+.+.+.+... ++-..|++.++ .. ++++.+|++||..|+ -.++||.+.|
T Consensus 271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGArWR--n~nvPGE~e~-- 336 (520)
T COG3634 271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGARWR--NMNVPGEDEY-- 336 (520)
T ss_pred HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcchh--cCCCCchHHH--
Confidence 9999999999876 66677788877432 34678888886 56 899999999996554 4589999998
Q ss_pred CCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+..-..+|-.++...+++|+|+|||+|+||+|.|-+|+....+||+++-.+
T Consensus 337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 888788899999999999999999999999999999999999999998776
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.77 E-value=2.6e-18 Score=169.10 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=117.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||||||||++|..|+++|++|+|||+.+.+||..++. + +.+....++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------i---------p~~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------I---------PSFRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------C---------CccCCCHHHHHH
Confidence 5799999999999999999999999999999999888764321 1 122223466677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..+.++.+|++. ++++.+. .. +...+.. .. ..||.||+|||+ ..|+.+++||.+.
T Consensus 486 ~~~~l~~~Gv~~--~~~~~vg--------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l----- 540 (1006)
T PRK12775 486 EVQRLVDIGVKI--ETNKVIG--------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA----- 540 (1006)
T ss_pred HHHHHHHCCCEE--EeCCccC--------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC-----
Confidence 777777788665 7775431 11 1111110 13 468999999995 2577888998642
Q ss_pred CCCccEEecccCC--------------CCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecCeeeeehh
Q 022090 167 TGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSRE 226 (303)
Q Consensus 167 ~~~g~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~~~~lp~~ 226 (303)
.| +++..++. +.....+++|+|||+|++|+|+|..+.++|.+ |++++|+....+|..
T Consensus 541 --~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~ 612 (1006)
T PRK12775 541 --GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPAR 612 (1006)
T ss_pred --CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCC
Confidence 22 33333221 11234689999999999999999999999875 899988775555544
No 66
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.77 E-value=5.9e-18 Score=150.03 Aligned_cols=175 Identities=20% Similarity=0.231 Sum_probs=112.9
Q ss_pred CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
+...++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+... + +.. ..+.+.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~--------------~~~--------~~~~~~~ 71 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-I--------------PEF--------RIPIERV 71 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-C--------------ccc--------ccCHHHH
Confidence 3346799999999999999999999999999999998888765321 0 000 0122334
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEE--eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~ 161 (303)
......+. +.++.. +.++.+..+.. ....+.+....... +... +.||+||+|||+ ..|..|++||.+.
T Consensus 72 ~~~~~~l~-~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~d~lviAtGs-~~~~~~~ipg~~~ 141 (352)
T PRK12770 72 REGVKELE-EAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSL-----EELV-KKYDAVLIATGT-WKSRKLGIPGEDL 141 (352)
T ss_pred HHHHHHHH-hCCeEE--ecCcEEeeccccccccccccccccCCH-----HHHH-hhCCEEEEEeCC-CCCCcCCCCCccc
Confidence 44444443 346544 77777765532 11112232221111 1134 689999999994 2467788888653
Q ss_pred cccCCCCCccEEeccc--------------CCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc-eEEEeecC
Q 022090 162 FCSSATGTGEVIHSTQ--------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (303)
Q Consensus 162 ~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-vt~~~r~~ 219 (303)
.+ ++.+.+ ........+++++|||+|.+|+|+|..|...|.+ ||++.|++
T Consensus 142 -------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 142 -------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred -------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 11 122110 0011123478999999999999999999999987 99999876
No 67
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.76 E-value=7.1e-18 Score=163.48 Aligned_cols=168 Identities=21% Similarity=0.280 Sum_probs=110.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+||||||||++||..|++.|++|+|||+.+.+||...+. ++.+ ....++.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~---------rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEF---------RISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------cccc---------CCCHHHHHH
Confidence 4799999999999999999999999999999999988875321 1111 111244455
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..+.+..+++++ ++++.. ... .... .. ..||+||+|||+. .+..+.++|....
T Consensus 593 ~ie~l~~~GVe~--~~g~~~----------d~~--ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~~---- 645 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCSP----------DLT--VAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGER---- 645 (1012)
T ss_pred HHHHHHhcCcEE--EEeccc----------ceE--hhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence 555556666544 554210 011 1111 23 5689999999952 2344466664321
Q ss_pred CCCccEEecccCCC------CCCCCCCeEEEECCCccHHHHHHHHhhc-cC-ceEEEeecCeeeeehhhHHH
Q 022090 167 TGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPVHVLSREMVYL 230 (303)
Q Consensus 167 ~~~g~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~-~vt~~~r~~~~~lp~~~~~~ 230 (303)
++...++.. .....+++|+|||+|++|+|+|..+.+. |. +|++++|++...+|....++
T Consensus 646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl 712 (1012)
T TIGR03315 646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL 712 (1012)
T ss_pred -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH
Confidence 222222211 1223589999999999999999999887 64 79999998856667655443
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.74 E-value=3.2e-17 Score=156.20 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=114.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+. ++ .+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip---------~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IP---------AFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CC---------CccCCHHHHH
Confidence 35799999999999999999999999999999999999876532 11 1111234555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+.++.+|++. ++++.|.. .+...+ .. ..||.||+|||+. .+..+.++|.+.
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~---- 435 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA---- 435 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence 5566677777655 77775521 011111 22 4689999999963 334456666542
Q ss_pred CCCCccEEec--------------ccCCC--CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090 166 ATGTGEVIHS--------------TQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 166 ~~~~g~~~~~--------------~~~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~ 228 (303)
.|. ++. ..... .....+++|+|||+|.+|+|+|..+.++|. +||+++|++...+|....
T Consensus 436 ---~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~ 511 (654)
T PRK12769 436 ---PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511 (654)
T ss_pred ---CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence 221 111 00100 012457899999999999999999999986 699999987555665443
No 69
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.73 E-value=8.5e-17 Score=147.36 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=115.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||+|++|+++|..|++.|++|+++|+.+.+||.+... ++. +....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~---------~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPS---------FKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Ccc---------ccCCHHHHH
Confidence 45799999999999999999999999999999999998876532 111 111235666
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
+..+.++.+|++. ++++.+... +...+ .. ..||.||+|||+.. +..+++||.+.
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~~----------~~~~~--------~~-~~~D~vilAtGa~~-~~~~~i~g~~~---- 249 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGRD----------ISLDD--------LL-EDYDAVFLGVGTYR-SMRGGLPGEDA---- 249 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCCc----------cCHHH--------HH-hcCCEEEEEeCCCC-CCcCCCCCcCC----
Confidence 6777778888765 777766210 11111 23 46899999999422 23456777543
Q ss_pred CCCCccEEeccc-----------CC-----CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090 166 ATGTGEVIHSTQ-----------YK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 166 ~~~~g~~~~~~~-----------~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~ 228 (303)
.| +++..+ .. ......+++++|||+|++|+|+|..+.++|. +||+++|++...+|....
T Consensus 250 ---~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~ 325 (467)
T TIGR01318 250 ---PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR 325 (467)
T ss_pred ---CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence 22 121110 00 0012357999999999999999999999985 799999988556665543
No 70
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.73 E-value=2.3e-17 Score=151.54 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=106.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.+... ++ .+....++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IP---------DFKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CC---------cccCCHHHHHH
Confidence 4799999999999999999999999999999999988876432 11 11112345555
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..+.+..++++. ++++.+.. + +.... .. ..||.||+|||+. .|..+.+||.+.
T Consensus 199 ~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa~-~~~~l~ipG~~~----- 251 (471)
T PRK12810 199 RIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGAY-KPRDLGIPGRDL----- 251 (471)
T ss_pred HHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCCC-CCCcCCCCCccC-----
Confidence 556667777655 77765521 0 00111 23 5789999999942 366677888643
Q ss_pred CCCccEEeccc-------------CCCCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090 167 TGTGEVIHSTQ-------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (303)
Q Consensus 167 ~~~g~~~~~~~-------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~ 218 (303)
.| +.+..+ ........+++|+|||+|++|+|+|..+.+.|. +||...+.
T Consensus 252 --~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 252 --DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred --CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 22 222111 011123468999999999999999999888886 68855433
No 71
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=2.3e-16 Score=135.52 Aligned_cols=204 Identities=25% Similarity=0.370 Sum_probs=138.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccCcCCC-CceEEecC--cccc-------cCCCCC-----
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYSY-DRLRLHLA--KQFC-------QLPHLP----- 69 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~~~~~-~~~~~~~~--~~~~-------~~~~~~----- 69 (303)
...|++.||-||+-|++|..|.+.+ .++..+||.+.. .|+..+. ++..+..+ +.+. .|+++.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 4689999999999999999999985 789999998865 3765421 22211111 0110 000000
Q ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEc
Q 022090 70 -----FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (303)
Q Consensus 70 -----~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlA 144 (303)
+-.....++++.++.+|++|.+.++. .. +|+++|+.|...+.+....+.....+. .. +.|+.||++
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~-----~~-y~ar~lVlg 152 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG-----TV-YRARNLVLG 152 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC-----cE-EEeeeEEEc
Confidence 00011356789999999999999883 33 999999977443333334422222211 47 899999999
Q ss_pred cCCCCCCCCCC-CCCccccccCCCCCccEEecccCCCCC-CCCCC-eEEEECCCccHHHHHHHHhhc----cCceEEEee
Q 022090 145 SGETTNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGK-PYGGK-NVLVVGSGNSGMEIALDLANH----AAKTSLVVR 217 (303)
Q Consensus 145 tG~~~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~-~v~ViG~G~~g~e~a~~l~~~----g~~vt~~~r 217 (303)
+| ..|.+|+ +..+. ..+++|++++.... ....+ .|.|||+|.||+|+..+|... ..++.|+.|
T Consensus 153 ~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR 222 (436)
T COG3486 153 VG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITR 222 (436)
T ss_pred cC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeec
Confidence 99 8899885 33222 33689999997532 33344 499999999999999999875 245889999
Q ss_pred cCeeeeehhhHHHH
Q 022090 218 SPVHVLSREMVYLG 231 (303)
Q Consensus 218 ~~~~~lp~~~~~~~ 231 (303)
++ ..+|.+..+++
T Consensus 223 ~~-gf~p~d~Skf~ 235 (436)
T COG3486 223 SS-GFLPMDYSKFG 235 (436)
T ss_pred cC-CCCccccchhh
Confidence 98 78887665443
No 72
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.71 E-value=6.4e-17 Score=144.25 Aligned_cols=181 Identities=16% Similarity=0.228 Sum_probs=114.9
Q ss_pred cEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
+|+|||||++|+.+|.+|+++ +.+|+|+|+++..- |... .+.......+.+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 589999999999999999644 68999999887521 1110 0000011122345555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
.+.+++++++++. . ..+|++++.+. ..|.+.++ .+ +.||+||+||| +.|..|.+||....
T Consensus 59 ~~~~~~~~~gv~~--~-~~~v~~id~~~----~~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~--- 118 (364)
T TIGR03169 59 DLRRLARQAGARF--V-IAEATGIDPDR----RKVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL--- 118 (364)
T ss_pred cHHHHHHhcCCEE--E-EEEEEEEeccc----CEEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence 5666777777653 4 35788998765 35776654 46 89999999999 78888888885332
Q ss_pred CCCCccEEe---ccc----CCCC--CCCCCCeEEEECCCccHHHHHHHHhhc----c--CceEEEeecCeeeeehhhHHH
Q 022090 166 ATGTGEVIH---STQ----YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPVHVLSREMVYL 230 (303)
Q Consensus 166 ~~~~g~~~~---~~~----~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~----g--~~vt~~~r~~~~~lp~~~~~~ 230 (303)
.-.... ... +... ....+++++|||+|.+|+|+|..|++. | .+|+++ +.+ .+++.....+
T Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~ 193 (364)
T TIGR03169 119 ---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKV 193 (364)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHH
Confidence 000000 000 1000 012357999999999999999999863 3 479998 555 5666544444
Q ss_pred HHHHHh
Q 022090 231 GVVLFK 236 (303)
Q Consensus 231 ~~~~~~ 236 (303)
...+.+
T Consensus 194 ~~~~~~ 199 (364)
T TIGR03169 194 RRLVLR 199 (364)
T ss_pred HHHHHH
Confidence 444333
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.70 E-value=2.2e-16 Score=149.94 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=115.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||+|++|+++|..|++.|++|++||+.+.+||.|.+.. +.+. .+ .++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi---------------p~~~--------l~-~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI---------------PPFK--------LD-KTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC---------------Cccc--------CC-HHHHH
Confidence 358999999999999999999999999999999999999876431 1111 11 34555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
...+.++.+|++. ++++.+.. .+.+.+ .. ..||.||+|||+. .+..+.+||.+.
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~---- 418 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA---- 418 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence 5666777778665 77765521 011111 23 4689999999963 344556777543
Q ss_pred CCCCccEEec-----------ccCCC-----CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecCeeeeehhhH
Q 022090 166 ATGTGEVIHS-----------TQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 166 ~~~~g~~~~~-----------~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~~~~lp~~~~ 228 (303)
.|. ++. ..... .....+++++|||+|.+|+|+|..+.++|. +||+++|++...+|....
T Consensus 419 ---~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~ 494 (639)
T PRK12809 419 ---PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK 494 (639)
T ss_pred ---CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 232 111 00000 122357999999999999999999888885 799999987555665544
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.68 E-value=1.2e-15 Score=150.88 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=113.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.+||+|||||||||++|..|++.|.+|+|+|+++.+||.+.... . .. + -.+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------~---~~---------~-g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------E---TI---------D-GKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------c---cc---------C-CccHHHHHHH
Confidence 57999999999999999999999999999999999998765321 0 00 0 0112234333
Q ss_pred HHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEe--------ecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090 87 LDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (303)
Q Consensus 87 l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~ 157 (303)
+.+.++.++ +.. +.+++|..+.... ....+... .+... ..... +.++.||+||| +.++.|++|
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~-~~~~~-i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPR-ERLWR-IRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccc-cceEE-EEcCEEEEcCC--CCCcCCCCC
Confidence 444444443 443 7788888774321 11111100 00000 01136 89999999999 677788888
Q ss_pred CccccccCCCCCccEEec---ccCCC-CCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeecC
Q 022090 158 GLCSFCSSATGTGEVIHS---TQYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (303)
Q Consensus 158 g~~~~~~~~~~~g~~~~~---~~~~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~~ 219 (303)
|.+. .|. +.. ..+.. .....+++++|||+|.+|+|+|..|++.|. .|+++++.+
T Consensus 293 G~~~-------pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 293 NNDR-------PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCCC-------CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 8653 232 221 11111 122357999999999999999999999995 578887776
No 75
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.67 E-value=5.6e-16 Score=142.57 Aligned_cols=159 Identities=22% Similarity=0.249 Sum_probs=108.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||...+. ++ .+....++..+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip---------~~~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IP---------NMKLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CC---------CccCCHHHHHH
Confidence 4799999999999999999999999999999999888764321 11 11111245555
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..+.++.++++. ++++.+.. + +.... .. ..||.||+|||.. .|..+++||.+.
T Consensus 199 ~~~~~~~~Gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~----- 251 (485)
T TIGR01317 199 RIDLLSAEGIDF--VTNTEIGV-D---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL----- 251 (485)
T ss_pred HHHHHHhCCCEE--ECCCEeCC-c---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC-----
Confidence 556667677665 77776631 0 11111 23 5789999999942 367788888642
Q ss_pred CCCccEEecccC--------C-------CCCCCCCCeEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090 167 TGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (303)
Q Consensus 167 ~~~g~~~~~~~~--------~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~ 219 (303)
.|. ....++ . ......+++|+|||+|++|+|+|..+.+.+ .+|+++++.+
T Consensus 252 --~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 252 --KGI-HYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred --CCc-EeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 221 111100 0 012246799999999999999988888876 4699998877
No 76
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.67 E-value=5.2e-16 Score=142.07 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=153.3
Q ss_pred CcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (303)
.+++|||.|++|..+...+.+. -+++++|-..+.+. |....++.- + +.--+.+++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------l------~~~~~~edi~ 62 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------L------AGEKTAEDIS 62 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------c------CCCccHHHHh
Confidence 5899999999999999999884 46899998887653 655544311 1 1111233444
Q ss_pred HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
-.-..+.++.++.. +.+..|+.|+++. ..|+++.+ .. +.||.||+||| |.|.+|++||.+.+
T Consensus 63 l~~~dwy~~~~i~L--~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~-- 124 (793)
T COG1251 63 LNRNDWYEENGITL--YTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP-- 124 (793)
T ss_pred ccchhhHHHcCcEE--EcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC--
Confidence 44556777777665 9999999998876 66777775 56 89999999999 99999999998754
Q ss_pred CCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-HHHHHHHhhC
Q 022090 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YLGVVLFKYV 238 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~-~~~~~~~~~l 238 (303)
+ ++...++.+- .....++.+|||+|.-|+|+|..|.+.|-++++++-++ ++|-+..+ ..+..|...+
T Consensus 125 -----~-v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~lL~~~l 197 (793)
T COG1251 125 -----G-VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRLLRRKL 197 (793)
T ss_pred -----C-eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHHHHHHH
Confidence 2 2333322221 11124568999999999999999999999999999999 88887766 5556677789
Q ss_pred CHHHHHHHHHHHHHHHhcCc
Q 022090 239 PFGWVDTLMVMLSRLVYGDL 258 (303)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~ 258 (303)
+..++++.+.+.+..+.++.
T Consensus 198 e~~Gi~~~l~~~t~ei~g~~ 217 (793)
T COG1251 198 EDLGIKVLLEKNTEEIVGED 217 (793)
T ss_pred HhhcceeecccchhhhhcCc
Confidence 99999988888888887633
No 77
>PRK13984 putative oxidoreductase; Provisional
Probab=99.66 E-value=6.3e-16 Score=146.37 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=106.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||+|++|+++|..|+++|++|+|+|+.+..||.+... ++. +....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~---------~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPS---------YRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCc---------ccCCHHHHH
Confidence 45789999999999999999999999999999999888765421 111 111134455
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~ 165 (303)
...+.++.++++. ++++.|.. + +.... .. ..||+||+|||+ ..|+.+++||.+.
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~----~------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~---- 391 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK----D------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDH---- 391 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC----c------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCC----
Confidence 5556667777655 77776621 0 11111 23 578999999995 2356778888653
Q ss_pred CCCCccEEecccCCC----------CCCCCCCeEEEECCCccHHHHHHHHhhccC------ceEEEe
Q 022090 166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVV 216 (303)
Q Consensus 166 ~~~~g~~~~~~~~~~----------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~vt~~~ 216 (303)
.+ +++..++.. .....+++|+|||+|.+|+|+|..+.+++. +|+++.
T Consensus 392 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 392 ---PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred ---cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 22 222222211 012246899999999999999999998753 678764
No 78
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.66 E-value=2.9e-16 Score=135.25 Aligned_cols=217 Identities=17% Similarity=0.124 Sum_probs=142.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
++++|+|+|+|.+|.++++.|...-++|+++...+.+-=+|. .|...-.-.....+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----------------------LpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----------------------LPSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----------------------cCCccccceeehhhhh
Confidence 468999999999999999999999999999988775321111 1111122233446777
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccc--
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC-- 163 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~-- 163 (303)
-....++..+-..+ .++.+.+.++++. ....+.....++.. .+.. +.||+||+|+| ..++.+.+||....+
T Consensus 112 PIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~-~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~~F 184 (491)
T KOG2495|consen 112 PIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSD-KEFV-IGYDYLVIAVG--AEPNTFGIPGVEENAHF 184 (491)
T ss_pred hHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCc-ceee-ecccEEEEecc--CCCCCCCCCchhhchhh
Confidence 77777765543332 5667778887765 33333332222211 3357 89999999999 778888899875531
Q ss_pred -----cCCCCCccEEecccCCCCC------CCCCCeEEEECCCccHHHHHHHHhhc--------------cCceEEEeec
Q 022090 164 -----SSATGTGEVIHSTQYKNGK------PYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVVRS 218 (303)
Q Consensus 164 -----~~~~~~g~~~~~~~~~~~~------~~~~~~v~ViG~G~~g~e~a~~l~~~--------------g~~vt~~~r~ 218 (303)
++++|...++++.+...-. ..+--+++|||||++|+|+|.+|++. -.+||+++..
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 2223333333322211111 11123699999999999999999864 1379999999
Q ss_pred CeeeeehhhHHHHHHHHhhCCHHHHHHHHHHHHH
Q 022090 219 PVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSR 252 (303)
Q Consensus 219 ~~~~lp~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 252 (303)
| .+|+.++.++....++.+....++....++++
T Consensus 265 d-~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk 297 (491)
T KOG2495|consen 265 D-HILNMFDKRLVEYAENQFVRDGIDLDTGTMVK 297 (491)
T ss_pred h-hHHHHHHHHHHHHHHHHhhhccceeecccEEE
Confidence 9 89999999888877777777666655554443
No 79
>PRK09897 hypothetical protein; Provisional
Probab=99.65 E-value=9.5e-15 Score=134.45 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=114.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCC-Cc-cCcCCC-CceEEec-----C---cccccCCCC------
Q 022090 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYSY-DRLRLHL-----A---KQFCQLPHL------ 68 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~g-g~-w~~~~~-~~~~~~~-----~---~~~~~~~~~------ 68 (303)
++|+|||||++|+++|.+|.+.+ .+|+|||++..+| |. |....- ..+..+. + ..+..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998764 5899999988777 43 432110 1111110 0 011111000
Q ss_pred ---CC---CCCCCCCCCHHHHHHHHHHHHHH-------cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 69 ---PF---PSSYPMFVSRAQFIEHLDHYVSH-------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 69 ---~~---~~~~~~~~~~~~l~~~l~~~~~~-------~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
.. ......|+++..+.+|+++..+. .+....++.+++|++++..+ +.|.|.+.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~- 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS- 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence 00 00113567776666666664432 23234456788999998765 56888775431 46
Q ss_pred EeeCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEecccCCC--CCCCCCCeEEEECCCccHHHHHHHHhhcc----
Q 022090 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA---- 209 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g---- 209 (303)
+.+|.||+|||+.. |..+ ++...| + ...|.. .....+.+|+|+|.|.+++|++..|...|
T Consensus 153 i~aD~VVLAtGh~~-p~~~--~~~~~y----------i-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~ 218 (534)
T PRK09897 153 ETFDLAVIATGHVW-PDEE--EATRTY----------F-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI 218 (534)
T ss_pred EEcCEEEECCCCCC-CCCC--hhhccc----------c-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence 79999999999632 2211 111112 1 111111 01223689999999999999999998663
Q ss_pred -----------------CceEEEeecC
Q 022090 210 -----------------AKTSLVVRSP 219 (303)
Q Consensus 210 -----------------~~vt~~~r~~ 219 (303)
.++++++|+.
T Consensus 219 ~~~~~~~~l~y~~sg~~~~I~a~SRrG 245 (534)
T PRK09897 219 EDDKQHVVFHRDNASEKLNITLMSRTG 245 (534)
T ss_pred ccCCCcceeeecCCCCCceEEEEeCCC
Confidence 2688999987
No 80
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=131.32 Aligned_cols=194 Identities=23% Similarity=0.254 Sum_probs=134.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (303)
...++|||+|++|..|+..+.+.|. +++++.+...+. |...++..... + ....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~Ls~~~~--~--------------~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARLSKFLL--T--------------VGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhccccee--e--------------cccccc
Confidence 3579999999999999999999986 788887666532 33322111000 0 011222
Q ss_pred HHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 85 ~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
....++.+.++++. ++++.|+.++... .+|.+.++ +. ++|+++++||| +.+++|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence 22334566678777 9999999998876 66777776 67 89999999999 68889999997632
Q ss_pred CCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH-HHHHHHHhhC
Q 022090 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YLGVVLFKYV 238 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~-~~~~~~~~~l 238 (303)
.+....+..+. ......+|+++|+|..|+|+|..|...+.+||++++.+ |.+|+... .+++.+...+
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhhHHHHHHHHHHH
Confidence 12222222211 11236789999999999999999999999999999999 99997433 5555555555
Q ss_pred CHHHHHHHHH
Q 022090 239 PFGWVDTLMV 248 (303)
Q Consensus 239 ~~~~~~~~~~ 248 (303)
.+..++..+.
T Consensus 266 e~kgVk~~~~ 275 (478)
T KOG1336|consen 266 ENKGVKFYLG 275 (478)
T ss_pred HhcCeEEEEe
Confidence 5555444333
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.61 E-value=4.9e-15 Score=139.09 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=110.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..++|+|||+|++||++|..|++.|++|+++|+.+.+||.+.+. ++.+. -..++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~---------~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYR---------LPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCcc---------CCHHHHH
Confidence 45789999999999999999999999999999999999876532 11111 1124444
Q ss_pred HHHHHHHHcCCCceeEeCeEE-EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcccccc
Q 022090 86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~ 164 (303)
...+.+..++++. ++++.+ .++..+ . .. ..||.||+|||... +....+++.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~--------~~-~~~D~Vi~AtG~~~-~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q--------LE-GEFDAVFVAIGAQL-GKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H--------HH-hhCCEEEEeeCCCC-CCcCCCCCCcc---
Confidence 4455566677554 666544 221110 0 12 35799999999532 23345666432
Q ss_pred CCCCCccEEecccCC-----CCCCCCCCeEEEECCCccHHHHHHHHhhcc-CceEEEeecCeeeeehhhH
Q 022090 165 SATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 165 ~~~~~g~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~~~~lp~~~~ 228 (303)
.|. ++...+. ......+++++|||+|.+|+|++..+.+++ .+|++++|.+...+|....
T Consensus 246 ----~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~ 310 (564)
T PRK12771 246 ----AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE 310 (564)
T ss_pred ----CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH
Confidence 222 2211111 112345799999999999999999999988 6799999987545554433
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.61 E-value=2.1e-15 Score=144.32 Aligned_cols=201 Identities=11% Similarity=0.123 Sum_probs=111.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-------CCCCceEEe-cCcccccCCCCCCCCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-------YSYDRLRLH-LAKQFCQLPHLPFPSSYPMF 77 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (303)
..++|+||||||||+++|..|++.|++|++||+.+..|+.... ..|..+... .+...-....+..|.. +
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R---~ 458 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR---W 458 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc---c
Confidence 4679999999999999999999999999999997655443110 000000000 0000000001111100 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~ 157 (303)
+ ....+.++... ..+..+.++.+..+ .. .++.++- .. ..||.||+|||+ ..|+.+++|
T Consensus 459 -~-k~~l~~i~~il-~~g~~v~~~~gv~l---G~-------dit~edl-------~~-~gyDAV~IATGA-~kpr~L~IP 516 (1028)
T PRK06567 459 -D-KNNLDILRLIL-ERNNNFKYYDGVAL---DF-------NITKEQA-------FD-LGFDHIAFCIGA-GQPKVLDIE 516 (1028)
T ss_pred -h-HHHHHHHHHHH-hcCCceEEECCeEE---Cc-------cCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCC
Confidence 1 12222222222 22333422334332 10 1111111 23 568999999994 267888899
Q ss_pred CccccccCCCCCccEEecccCCCC-------------CCCCCCeEEEECCCccHHHHHHHHhh---ccCceEEEeecCee
Q 022090 158 GLCSFCSSATGTGEVIHSTQYKNG-------------KPYGGKNVLVVGSGNSGMEIALDLAN---HAAKTSLVVRSPVH 221 (303)
Q Consensus 158 g~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~v~ViG~G~~g~e~a~~l~~---~g~~vt~~~r~~~~ 221 (303)
|.+. .| ++...++... ....+++|+|||||++|+|+|..... .+.++++....+ .
T Consensus 517 Geda-------~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~ 587 (1028)
T PRK06567 517 NFEA-------KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-K 587 (1028)
T ss_pred CccC-------CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-h
Confidence 8753 22 2333322111 11236899999999999999996654 356677766665 6
Q ss_pred eeehhhHHHHHHHHhhCCH
Q 022090 222 VLSREMVYLGVVLFKYVPF 240 (303)
Q Consensus 222 ~lp~~~~~~~~~~~~~l~~ 240 (303)
.+|..+.+++..+...+-.
T Consensus 588 ~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 588 DLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred hcccccHHHHHHHHHHHHh
Confidence 7787777776655554433
No 83
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.60 E-value=4e-14 Score=127.15 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHh-hCCCCeEEEecCCCCCCccCcC
Q 022090 6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY 49 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~iie~~~~~gg~w~~~ 49 (303)
.+++|+||||||||+.+|..|+ +.|++|+|||+.+.+||.+++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 4578999999999999999875 5699999999999999988754
No 84
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.56 E-value=3.2e-13 Score=119.32 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=120.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCC---CCeEEEecCCCCCCccCc-CCCCceEEecCccccc-C-CCCC------------
Q 022090 8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-L-PHLP------------ 69 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g---~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~-~-~~~~------------ 69 (303)
++|+|||+|++|+++|.+|.+.- ..+.|||+...+|.--.+ ..-+...++.+...+. + ++.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 249999999887753322 2122222333322221 1 2211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHc----CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090 70 -------FPSSYPMFVSRAQFIEHLDHYVSHF----NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (303)
Q Consensus 70 -------~~~~~~~~~~~~~l~~~l~~~~~~~----~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (303)
...+-+.|+++.-+.+|+.++...+ .-....+...+.+++.+.+..+.|.+...++ .. ..|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence 1123356788888888887765433 2111124556777777765456777777775 45 689
Q ss_pred CEEEEccCCCCCCCCCCCCCccccccCCCCCcc-EEecccCCCC---CCCCCCeEEEECCCccHHHHHHHHhhccCc--e
Q 022090 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAAK--T 212 (303)
Q Consensus 139 d~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~--v 212 (303)
|.+|+|||+... ..+. - ...+ .+. -+....|... ......+|+|+|+|.+-+|....|.++|++ |
T Consensus 154 d~~Vlatgh~~~-~~~~-~-~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I 224 (474)
T COG4529 154 DIIVLATGHSAP-PADP-A-ARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI 224 (474)
T ss_pred eEEEEeccCCCC-Ccch-h-hhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence 999999996332 2222 1 1111 111 1222222211 122356799999999999999999999864 9
Q ss_pred EEEeecC
Q 022090 213 SLVVRSP 219 (303)
Q Consensus 213 t~~~r~~ 219 (303)
|++.|+.
T Consensus 225 t~iSRrG 231 (474)
T COG4529 225 TAISRRG 231 (474)
T ss_pred EEEeccc
Confidence 9999998
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=129.12 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=112.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+||||||+||++|..|+++|++|+++|+.+..||...+. .|.|-...++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence 4799999999999999999999999999999999999875543 1233333477788
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
..++.++.|+++ +.++++-. .++.+. -. -.+|.|++|+|. ..|+..++||.+.
T Consensus 179 ~i~~l~~~Gv~~--~~~~~vG~----------~it~~~--------L~-~e~Dav~l~~G~-~~~~~l~i~g~d~----- 231 (457)
T COG0493 179 RLELLERSGVEF--KLNVRVGR----------DITLEE--------LL-KEYDAVFLATGA-GKPRPLDIPGEDA----- 231 (457)
T ss_pred HHHHHHHcCeEE--EEcceECC----------cCCHHH--------HH-HhhCEEEEeccc-cCCCCCCCCCcCC-----
Confidence 888888888554 77776621 122222 12 245999999996 5667677887652
Q ss_pred CCCccEEecccC------------C--CCCCCCCCeEEEECCCccHHHHHHHHhhccC-ceEEEeec
Q 022090 167 TGTGEVIHSTQY------------K--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (303)
Q Consensus 167 ~~~g~~~~~~~~------------~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~vt~~~r~ 218 (303)
.| +....++ . ......+++++|||+|.|++|++....+.|. +|+.+++.
T Consensus 232 --~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~ 295 (457)
T COG0493 232 --KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRE 295 (457)
T ss_pred --Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccc
Confidence 12 1111111 1 1122245999999999999999999999987 58887543
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.52 E-value=2e-13 Score=116.16 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=99.2
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHH
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
...+.|+|||+||||+.+|..|.++ +++|.|+|+.+.+.|..++..- |.++.-..
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvKn 74 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVKN 74 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchhh
Confidence 3456999999999999999999985 6899999999988887665411 22333344
Q ss_pred HHHHHHHHHHHcCCCceeEeCeEE-EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090 83 FIEHLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (303)
Q Consensus 83 l~~~l~~~~~~~~l~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~ 161 (303)
+.+.+.+.+++..... .-|.+| .. +.++. -+ -.||.||+|.|+ ..++..+|||.+.
T Consensus 75 vintFt~~aE~~rfsf--~gNv~vG~d-----------vsl~e--------L~-~~ydavvLaYGa-~~dR~L~IPGe~l 131 (468)
T KOG1800|consen 75 VINTFTKTAEHERFSF--FGNVKVGRD-----------VSLKE--------LT-DNYDAVVLAYGA-DGDRRLDIPGEEL 131 (468)
T ss_pred HHHHHHHHhhccceEE--Eecceeccc-----------ccHHH--------Hh-hcccEEEEEecC-CCCcccCCCCccc
Confidence 5556666666544332 333333 11 22222 23 368999999997 3567788999762
Q ss_pred cccCCCCCccEEecccCC-----------CCCCCCCCeEEEECCCccHHHHHHHHhh
Q 022090 162 FCSSATGTGEVIHSTQYK-----------NGKPYGGKNVLVVGSGNSGMEIALDLAN 207 (303)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~v~ViG~G~~g~e~a~~l~~ 207 (303)
.| ++...++. ...++...+++|||.|++|+|+|+.|..
T Consensus 132 -------~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 132 -------SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred -------cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 22 22222211 1234557899999999999999999764
No 87
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.51 E-value=1.5e-13 Score=125.15 Aligned_cols=159 Identities=18% Similarity=0.324 Sum_probs=100.4
Q ss_pred HHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHHHHH-HHHHHHHcCC
Q 022090 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH-LDHYVSHFNI 96 (303)
Q Consensus 21 ~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-l~~~~~~~~l 96 (303)
++|..|++. ..+|+|||+++... |... .++.. ... .....++..+ ...+.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-------~~~~---------~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-------FANC---------GLPYV-----IGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-------EEcC---------CCCeE-----eccccCCHHHcccCCHHHHHHhcCC
Confidence 367888876 46899999988532 1000 00000 001 1112233333 2345566776
Q ss_pred CceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe--eCEEEEccCCCCCCCCCCCCCccccccCCCCCccEEe
Q 022090 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH 174 (303)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--ad~vIlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~ 174 (303)
+. +++++|++++..+ .+|.+.+..++ .. +. ||+||+||| +.|..|.+||.+. . .+++
T Consensus 60 ~~--~~~~~V~~id~~~----~~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~-------~-~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER----QTVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINL-------D-IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC----CEEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCC-------C-CEEE
Confidence 64 7889999998655 34444432211 35 66 999999999 7888888988652 1 1222
Q ss_pred cccCCCC-------CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeee
Q 022090 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (303)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~ 222 (303)
.....+. ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~ 172 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RI 172 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-cc
Confidence 2221110 01346899999999999999999999999999999988 44
No 88
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.50 E-value=8.5e-14 Score=120.06 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=93.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC--------ccCc---CCCCceEEecC---cc----cccCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK---YSYDRLRLHLA---KQ----FCQLPHL 68 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~---~~~~~~~~~~~---~~----~~~~~~~ 68 (303)
.+||+|||||+||+.||..++++|.+|+|||+.+.+|- -++. ..+.....+.| .. +..|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 57999999999999999999999999999999997763 1111 11111111111 00 0001000
Q ss_pred -----------CCC--CCCCCCC---CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090 69 -----------PFP--SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (303)
Q Consensus 69 -----------~~~--~~~~~~~---~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (303)
++. ..-..|| ....+.+.+...+++.++.. +++++|.+++.++ ..+.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 000 0001233 46788888888999888776 9999999999886 6788988875
Q ss_pred EEEEeeCEEEEccCCCCCCCC
Q 022090 133 EEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 133 ~~~~~ad~vIlAtG~~~~p~~ 153 (303)
.+ +.||.||+|||..|.|..
T Consensus 152 ~~-i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 ET-VKCDSLILATGGKSWPKL 171 (408)
T ss_pred CE-EEccEEEEecCCcCCCCC
Confidence 47 899999999998777643
No 89
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.46 E-value=1.5e-12 Score=101.68 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=88.9
Q ss_pred EEECCcHHHHHHHHHHhhC-----CCCeEEEecCCCC-CCccCcCCCCceEEecCcccccC-CCCC--------------
Q 022090 11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP-------------- 69 (303)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~-----g~~v~iie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~-~~~~-------------- 69 (303)
+|||+|++|++++.+|.++ ..+|+|||+++.. |+.|.....+...++.+...+.. ++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999887 4589999997664 45777654445555555444333 2211
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHc------CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090 70 --FPSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (303)
Q Consensus 70 --~~~~~~~~~~~~~l~~~l~~~~~~~------~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (303)
.......|+++..+.+||.+..+.. ++.+. +...+|++++..+ +.|.|.+.++ .. +.||.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence 0112346889999999998876653 22221 3467889998876 5588888775 56 899999
Q ss_pred EEccCC
Q 022090 142 VVASGE 147 (303)
Q Consensus 142 IlAtG~ 147 (303)
|+|||+
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=9.4e-13 Score=117.82 Aligned_cols=134 Identities=19% Similarity=0.300 Sum_probs=74.4
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC--------ccCc-C---CCCceEEe---cCccc----ccCC--
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y---SYDRLRLH---LAKQF----CQLP-- 66 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg--------~w~~-~---~~~~~~~~---~~~~~----~~~~-- 66 (303)
|||+|||||+|||.||..|++.|.+|+|+|+++.+|- -++. + .+...... .+..+ ..|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6999999999999999999999999999999997763 1110 0 00011100 00000 0000
Q ss_pred ---------CCCC--CCC---CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090 67 ---------HLPF--PSS---YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (303)
Q Consensus 67 ---------~~~~--~~~---~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (303)
..+. ..+ +|.--...++.+.|.+.+++.+++. +++++|.++..++ ++.|.|.+++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 0000 000 1122246788899999999888766 9999999998876 34588888432
Q ss_pred EEEEeeCEEEEccCCCCCCC
Q 022090 133 EEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 133 ~~~~~ad~vIlAtG~~~~p~ 152 (303)
.. +.+|.||+|||..+.|.
T Consensus 151 ~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 GE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EE-EEESEEEE----SSSGG
T ss_pred cc-ccCCEEEEecCCCCccc
Confidence 67 89999999999766554
No 91
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.38 E-value=6.2e-12 Score=108.62 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=85.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCC-----CCc--------------eEEecC-cccccCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-----YDR--------------LRLHLA-KQFCQLPH 67 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~-----~~~--------------~~~~~~-~~~~~~~~ 67 (303)
+||+|||||++|+++|..|++.|++|+|+|+....+..|.... ... ...... .... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV---E 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE---E
Confidence 5999999999999999999999999999999976554322110 000 000000 0000 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
.+.+.......++..+.+.+.+.+.+.+++. +++++|+++..++ +.+.+...++ ..+ +++|+||+|+|.
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~------~~~-~~a~~vv~a~G~ 146 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG------EGT-VTAKIVIGADGS 146 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc------cEE-EEeCEEEECCCc
Confidence 1111111223568889999999888877665 8999999998766 4455554432 157 899999999997
Q ss_pred CC
Q 022090 148 TT 149 (303)
Q Consensus 148 ~~ 149 (303)
++
T Consensus 147 ~s 148 (295)
T TIGR02032 147 RS 148 (295)
T ss_pred ch
Confidence 55
No 92
>PRK06847 hypothetical protein; Provisional
Probab=99.35 E-value=7.6e-11 Score=105.58 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC----cc--Cc------------------CCCCceEEecCc--
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IW--KK------------------YSYDRLRLHLAK-- 60 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg----~w--~~------------------~~~~~~~~~~~~-- 60 (303)
.+||+|||||++|+++|..|++.|++|+|+|+++.... .. .. ............
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57999999999999999999999999999999764221 00 00 001111111111
Q ss_pred ccccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 61 ~~~~~~~~~~-~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
....++.... ...+ .....+.++.+++.+.+...++.+ +++++|++++.++ +.+.+.+.++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence 0111110000 0011 123567889999999888777655 8999999998755 5577777654 56 89
Q ss_pred eCEEEEccCCCCCC
Q 022090 138 GRFLVVASGETTNP 151 (303)
Q Consensus 138 ad~vIlAtG~~~~p 151 (303)
+|.||.|+|.++..
T Consensus 152 ad~vI~AdG~~s~~ 165 (375)
T PRK06847 152 YDLVVGADGLYSKV 165 (375)
T ss_pred cCEEEECcCCCcch
Confidence 99999999976643
No 93
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.34 E-value=3.4e-11 Score=108.32 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=84.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CC---CCCccCc--------------CCCCceEEecCcccccCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP 69 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~---~gg~w~~--------------~~~~~~~~~~~~~~~~~~~~~ 69 (303)
+||+||||||+|+++|..|++.|++|+++|+. .. .|+.... +.+....+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999997 21 1111100 111222222221100000111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC---CCCceeEEEEeeCEEEEccC
Q 022090 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASG 146 (303)
Q Consensus 70 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~~~~~~~~~ad~vIlAtG 146 (303)
.+..+....++..+.++|.+.+.+.+.+. +. ..|+++..++ +.+.+...++. ++ +..+ +.++.||.|+|
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~--~~~~-i~a~~VI~AdG 152 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGG--EKGS-VEADVVIGADG 152 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCC--cceE-EEeCEEEECCC
Confidence 11112223688999999999988888764 44 4688887655 56777766421 11 2257 89999999999
Q ss_pred CCCC
Q 022090 147 ETTN 150 (303)
Q Consensus 147 ~~~~ 150 (303)
.+|.
T Consensus 153 ~~S~ 156 (388)
T TIGR02023 153 ANSP 156 (388)
T ss_pred CCcH
Confidence 7663
No 94
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.33 E-value=1.9e-11 Score=103.25 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcC-CCCceEEecC-cccccCCCCCCCCCCC--CCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 81 (303)
.+||+|||||++|+++|..|++.|++|+++|+...+|| .|... .++...+... ..+..--..++..... ...++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 57999999999999999999999999999999987765 45322 1222111110 0000000111111101 123577
Q ss_pred HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeec----CCCCceeEEEEeeCEEEEccCCCC
Q 022090 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL----LSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~----~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
++...|.+.+.+.+... ++++.|+++..++++..+-+..... .+..++... +.++.||+|||+++
T Consensus 105 ~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~-i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT-IEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE-EEcCEEEEEeCCCc
Confidence 88888888888888665 8899999987655222232332210 000001257 89999999999755
No 95
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.33 E-value=4.2e-11 Score=108.88 Aligned_cols=132 Identities=18% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-------ccCcC---CCC---------ceEEe------cCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------IWKKY---SYD---------RLRLH------LAK 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-------~w~~~---~~~---------~~~~~------~~~ 60 (303)
..+||+|||||++|+++|..|+++|++|+|+||.+..|. .+... .++ ..... ...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 458999999999999999999999999999999876542 11110 001 00000 000
Q ss_pred ccc--cCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090 61 QFC--QLPHLPF--PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (303)
Q Consensus 61 ~~~--~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (303)
... .+..... +........+.++.++|.+.+++.|++. +.+++|+++..++ +.+.+...++ .+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i 151 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-I 151 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-E
Confidence 000 0100000 0001112367888899999998888765 8899999987654 4443333332 46 8
Q ss_pred eeCEEEEccCCCC
Q 022090 137 SGRFLVVASGETT 149 (303)
Q Consensus 137 ~ad~vIlAtG~~~ 149 (303)
.++.||+|+|.++
T Consensus 152 ~A~~VI~A~G~~s 164 (428)
T PRK10157 152 EAKTVILADGVNS 164 (428)
T ss_pred ECCEEEEEeCCCH
Confidence 9999999999754
No 96
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.32 E-value=1.1e-13 Score=113.01 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=85.8
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH---
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 85 (303)
||+|||||++|+++|..|++.+.+++++|+.+..+..... .+..... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--IPSPLLV-----------------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--HHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--ccccccc-----------------cccccccccccccc
Confidence 7999999999999999999999999999887642210000 0000000 00000001110
Q ss_pred -HHHHHHHHcCCCceeEeCeEEEEEEEeCCC---CeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccc
Q 022090 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (303)
Q Consensus 86 -~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~ 161 (303)
.+.+.+...+++. ++++++.+++..... ..+.+...... +..+ +.||+||+||| +.|..|.+||.+.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~----~~~~-~~~d~lviAtG--~~~~~~~i~g~~~ 132 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPESKRVVCPAVTIQVVETG----DGRE-IKYDYLVIATG--SRPRTPNIPGEEV 132 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEESTTEEEETCEEEEEEETT----TEEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred cccccccccceEEE--eeccccccccccccccccCcccceeeccC----CceE-ecCCeeeecCc--cccceeecCCCcc
Confidence 1222223445443 678899999876621 12233222211 2267 89999999999 7788888998632
Q ss_pred cccCCCCCccEEecccCCCCCCCCCCeEEEEC
Q 022090 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (303)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG 193 (303)
.. ....+.++..+.. ....+++++|||
T Consensus 133 ~~----~~~~~~~~~~~~~-~~~~~~~v~VvG 159 (201)
T PF07992_consen 133 AY----FLRGVDDAQRFLE-LLESPKRVAVVG 159 (201)
T ss_dssp EC----BTTSEEHHHHHHT-HSSTTSEEEEES
T ss_pred cc----ccccccccccccc-cccccccccccc
Confidence 10 0122333333333 222345999999
No 97
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.32 E-value=1.4e-11 Score=109.06 Aligned_cols=135 Identities=21% Similarity=0.205 Sum_probs=83.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc-----------------------C---CCCceEEecC--
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----------------------Y---SYDRLRLHLA-- 59 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~-----------------------~---~~~~~~~~~~-- 59 (303)
+||+|||||++|+++|..|+++|++|+|||+.+........ . ..........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999997643211000 0 0000111111
Q ss_pred ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (303)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (303)
.....+. ...+........+..+.+.|.+.+++.++.. +++++++++..+. +..++.+.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~g-- 154 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGEDG-- 154 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccCC--
Confidence 0000011 0001111223467899999999999888544 9999999998876 4455555554333
Q ss_pred eeEEEEeeCEEEEccCCCCC
Q 022090 131 EIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 131 ~~~~~~~ad~vIlAtG~~~~ 150 (303)
+..+ +++|.||.|+|.+|.
T Consensus 155 ~~~~-i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 155 EEET-IEADLVVGADGAHSK 173 (356)
T ss_dssp EEEE-EEESEEEE-SGTT-H
T ss_pred ceeE-EEEeeeecccCcccc
Confidence 4457 899999999998773
No 98
>PRK08244 hypothetical protein; Provisional
Probab=99.32 E-value=6.9e-11 Score=109.67 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=84.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-------------------ccCc-----CCCCceEEecCcccc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQFC 63 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~~ 63 (303)
+||+||||||+|+++|..|++.|++|+|+|+.+.... .|.. ..+............
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 7999999999999999999999999999999764321 0000 001111111000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
.+...+.+..+....++..+.+.+.+.++..+++. ++++++++++.++ +..++.+.+..+ ..+ +++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~-i~a~~vVg 153 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPDG----LRT-LTSSYVVG 153 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCCc----cEE-EEeCEEEE
Confidence 11111101111122467788888888888777655 9999999998765 456666654221 147 89999999
Q ss_pred ccCCCC
Q 022090 144 ASGETT 149 (303)
Q Consensus 144 AtG~~~ 149 (303)
|+|.+|
T Consensus 154 ADG~~S 159 (493)
T PRK08244 154 ADGAGS 159 (493)
T ss_pred CCCCCh
Confidence 999866
No 99
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.32 E-value=5.5e-12 Score=119.69 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=104.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||+||+||+||-+|.+.|+.|+++||.+..||...+. .|.+. ....+.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-ipnmk-----------------------ldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-IPNMK-----------------------LDKFVVQR 1840 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-CCccc-----------------------hhHHHHHH
Confidence 4799999999999999999999999999999999999986543 22221 11234555
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
-.+...+.|+++ ..|+++-. .+..+. -. -+.|.||+|+|+ ..|+-.++||.+.
T Consensus 1841 rv~ll~~egi~f--~tn~eigk----------~vs~d~--------l~-~~~daiv~a~gs-t~prdlpv~grd~----- 1893 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRF--VTNTEIGK----------HVSLDE--------LK-KENDAIVLATGS-TTPRDLPVPGRDL----- 1893 (2142)
T ss_pred HHHHHHhhCceE--Eeeccccc----------cccHHH--------Hh-hccCeEEEEeCC-CCCcCCCCCCccc-----
Confidence 555666667766 56655521 122221 12 356899999996 4677777888764
Q ss_pred CCCc-----cEEecc--------cCCCCCCCCCCeEEEECCCccHHHHHHHHhhccCc
Q 022090 167 TGTG-----EVIHST--------QYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (303)
Q Consensus 167 ~~~g-----~~~~~~--------~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 211 (303)
+| ..+|.. .-.+....++|+|+|||+|-+|-|+...-.+.|.+
T Consensus 1894 --kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1894 --KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred --cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 22 112211 00112334689999999999999999988888865
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.31 E-value=3.6e-11 Score=101.17 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=86.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-CccCcCC-CCceEEecC-cccccCCCCCCCCCCC--CCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 81 (303)
.+||+|||||++|+++|..|+++|.+|+|+||+..+| +.|.... ++.+.+..+ ..+......++...-. ...++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5899999999999999999999999999999998775 4664321 222111111 0111111112111111 123567
Q ss_pred HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecC---CC-CceeEEEEeeCEEEEccCCCC
Q 022090 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL---SP-GREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~---~~-~~~~~~~~~ad~vIlAtG~~~ 149 (303)
++...+...+.+.+++. ++++.|+++..+++. ...-|.+.... .+ ..+... +.++.||.|||+.+
T Consensus 101 el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a 170 (254)
T TIGR00292 101 EFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence 88888888888888665 889999999876532 12223332110 00 001257 89999999999643
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.31 E-value=1e-10 Score=109.53 Aligned_cols=137 Identities=19% Similarity=0.273 Sum_probs=87.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc------------------------CCCCceEEecCc-
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAK- 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~------------------------~~~~~~~~~~~~- 60 (303)
..+||+|||||++|+++|..|++.|++|+|+|+.+......+. ............
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998754321110 001112221111
Q ss_pred -ccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 61 -QFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 61 -~~~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
....+.. ...+..++ ...++..+.+.|.+.+.++ +++ ++++++|++++.++ +.+++++.+.++ +..+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~- 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD--DGVTVTLTDADG---QRET- 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE-
Confidence 1111110 00001111 2235667888888877665 544 49999999998876 557777764211 2357
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+++|+||.|+|.+|.
T Consensus 161 i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 VRARYVVGCDGANSF 175 (538)
T ss_pred EEEEEEEecCCCchh
Confidence 899999999998774
No 102
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.30 E-value=6e-11 Score=106.93 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C--------------------ccCc------CC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKK------YS 50 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g--------------------~w~~------~~ 50 (303)
|+. ...+||+|||||++|+++|..|+++|++|+|+|+.+... + .|.. ..
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 533 456899999999999999999999999999999976321 1 0100 00
Q ss_pred CCceEEecCc--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC
Q 022090 51 YDRLRLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127 (303)
Q Consensus 51 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~ 127 (303)
+..+.+.... ....+..... +.......++..+.+.+.+.+++.+++. +++++|+++..++ +.++|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g-- 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG-- 153 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence 1111111100 0001110000 0001112456788888888888777655 8899999998765 5677777653
Q ss_pred CCceeEEEEeeCEEEEccCCCCC
Q 022090 128 PGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 128 ~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|+|.++.
T Consensus 154 -----~~-~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 154 -----RR-LEAALAIAADGAAST 170 (392)
T ss_pred -----CE-EEeCEEEEecCCCch
Confidence 46 899999999997663
No 103
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=111.87 Aligned_cols=179 Identities=22% Similarity=0.256 Sum_probs=110.0
Q ss_pred EEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCC-CCCHHHHHHH
Q 022090 10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEH 86 (303)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 86 (303)
++|||+|++|+++|..|.+. +.+++++.+..... |... +.+..... ......+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS-------YYRC--------------PLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC-------CCCC--------------ccchHHhcccCCHHHhccc
Confidence 58999999999999998886 45888887766432 1000 00000000 0011111111
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCccccccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~~~~~~~ 166 (303)
.. +....++.. +.+++|++++... ..|.+.++ + +.+|++++||| +.|..++ +. +
T Consensus 60 ~~-~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~~--~---- 113 (415)
T COG0446 60 PR-FNRATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--IS--D---- 113 (415)
T ss_pred ch-hHHhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--cc--c----
Confidence 11 113445544 8889999998765 45666653 4 78999999999 6666554 11 1
Q ss_pred CCCccEEecccCCCCC-----CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhh-HHHHHHHHhhC
Q 022090 167 TGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM-VYLGVVLFKYV 238 (303)
Q Consensus 167 ~~~g~~~~~~~~~~~~-----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~-~~~~~~~~~~l 238 (303)
.............. ....++++|||+|..|+|+|..+.++|.+|++++..+ ++++... ..++..+.+.+
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~~~~~l 188 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEELAELL 188 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHHHHHHH
Confidence 11112222111111 1114899999999999999999999999999999999 7777765 44444444433
No 104
>PRK08013 oxidoreductase; Provisional
Probab=99.30 E-value=5e-11 Score=107.69 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=84.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---C----------------------ccCc------CCCCceE
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKK------YSYDRLR 55 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g----------------------~w~~------~~~~~~~ 55 (303)
.+||+||||||+|+++|..|++.|++|+|+|+.+... | .|.. ..+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 3799999999999999999999999999999976421 1 1111 0111111
Q ss_pred EecCcccccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090 56 LHLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (303)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (303)
...................+ ...++..+.+.|.+.+... +++. +++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 11111000000000000111 1245778888888877765 4444 8999999997765 4567777654
Q ss_pred eEEEEeeCEEEEccCCCCC
Q 022090 132 IEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 132 ~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +++|.||.|+|.+|.
T Consensus 153 -~~-i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 -SM-LTARLVVGADGANSW 169 (400)
T ss_pred -CE-EEeeEEEEeCCCCcH
Confidence 57 899999999998774
No 105
>PRK06184 hypothetical protein; Provisional
Probab=99.28 E-value=1.8e-10 Score=107.12 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=84.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------ccCc------------------CCCCceEEecC-cc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ 61 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~~------------------~~~~~~~~~~~-~~ 61 (303)
.+||+||||||+|+++|..|+++|++|+|+|+.+.... .+.. ..++....... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999764421 1100 01111111111 00
Q ss_pred cccCCCC----CC---CCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 62 FCQLPHL----PF---PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 62 ~~~~~~~----~~---~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
....... +. +.......++..+.+.|.+.+...+++. ++++++++++.++ +.+++.+.+..++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~ 154 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPAGE----ET 154 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence 0000000 00 0001122456677778888887777554 9999999998765 4466666432221 57
Q ss_pred EEeeCEEEEccCCCCC
Q 022090 135 YYSGRFLVVASGETTN 150 (303)
Q Consensus 135 ~~~ad~vIlAtG~~~~ 150 (303)
+++|+||.|+|.+|.
T Consensus 155 -i~a~~vVgADG~~S~ 169 (502)
T PRK06184 155 -VRARYLVGADGGRSF 169 (502)
T ss_pred -EEeCEEEECCCCchH
Confidence 899999999998763
No 106
>PLN02463 lycopene beta cyclase
Probab=99.28 E-value=6.7e-11 Score=107.45 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-----CccCc------------CCCCceEEecCcccccCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----SIWKK------------YSYDRLRLHLAKQFCQLPHL 68 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-----g~w~~------------~~~~~~~~~~~~~~~~~~~~ 68 (303)
..+||+|||||++|+++|..|++.|++|+++|+.+... +.|.. ..++...+....... ...
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~--~~~ 104 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK--KDL 104 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC--ccc
Confidence 35799999999999999999999999999999975321 22221 011111111000000 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
... -...++..+.+++.+.+...++.. .+.+|++++..+ +.+.|++.++ .+ ++++.||.|+|..
T Consensus 105 --~~~-y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~ 168 (447)
T PLN02463 105 --DRP-YGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFS 168 (447)
T ss_pred --cCc-ceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCC
Confidence 000 122468889999988887777653 357888888765 5677887764 47 8999999999975
Q ss_pred CC
Q 022090 149 TN 150 (303)
Q Consensus 149 ~~ 150 (303)
+.
T Consensus 169 s~ 170 (447)
T PLN02463 169 RC 170 (447)
T ss_pred cC
Confidence 53
No 107
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.28 E-value=1.2e-10 Score=105.78 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=82.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C-----------------ccCc-----CCCCceEEecC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S-----------------IWKK-----YSYDRLRLHLA 59 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g-----------------~w~~-----~~~~~~~~~~~ 59 (303)
..+||+|||||++|+++|..|++.|++|+|+|+.+... | .|.. .....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 35899999999999999999999999999999987532 1 1110 00111111111
Q ss_pred c--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 60 K--QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 60 ~--~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
. ....+.......... ....+..+.+.|.+.+... ++. +++++++++++.++ +.+.|.+.+++ +..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~--~~~~v~~~~~~----~~~~- 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ--DAATVTLEIEG----KQQT- 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC--CeeEEEEccCC----cceE-
Confidence 0 001111100000001 1123346777777766655 444 48899999997765 55777776432 1247
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+++|.||.|+|.+|.
T Consensus 168 i~adlvIgADG~~S~ 182 (415)
T PRK07364 168 LQSKLVVAADGARSP 182 (415)
T ss_pred EeeeEEEEeCCCCch
Confidence 899999999998774
No 108
>PRK06834 hypothetical protein; Provisional
Probab=99.26 E-value=1.6e-10 Score=106.67 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=84.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-------CccCc--------CCCCceE-----E---ecCcccc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----L---HLAKQFC 63 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-------g~w~~--------~~~~~~~-----~---~~~~~~~ 63 (303)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +.+.. ..++.+. . .......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 3799999999999999999999999999999976421 11110 0011000 0 0000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
.+...+....+.....+..+.+.|.+.+++.++.+ +++++|++++.++ +.+.+++.++ .+ +++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence 11111100011222456778888888888777555 9999999998865 4577766543 46 89999999
Q ss_pred ccCCCCC
Q 022090 144 ASGETTN 150 (303)
Q Consensus 144 AtG~~~~ 150 (303)
|+|.+|.
T Consensus 151 ADG~~S~ 157 (488)
T PRK06834 151 CDGGRSL 157 (488)
T ss_pred ecCCCCC
Confidence 9998663
No 109
>PRK10015 oxidoreductase; Provisional
Probab=99.26 E-value=1.8e-10 Score=104.78 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=82.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc------cCcCC----CCceE---------------EecCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKKYS----YDRLR---------------LHLAK 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~~~----~~~~~---------------~~~~~ 60 (303)
..+||+|||||++|+++|..|++.|++|+++|+.+..|.. ..... .+.+. .....
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 4589999999999999999999999999999998765421 00000 11100 00000
Q ss_pred c--cccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090 61 Q--FCQLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (303)
Q Consensus 61 ~--~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (303)
. ...+.... .+........+..+..+|.+.++..+.+. +.+++|+.+..++ +.+.....++ .+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i 151 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-L 151 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-E
Confidence 0 00000000 00000112357888888988888888665 8889999987654 3444332221 57 8
Q ss_pred eeCEEEEccCCCC
Q 022090 137 SGRFLVVASGETT 149 (303)
Q Consensus 137 ~ad~vIlAtG~~~ 149 (303)
.++.||+|+|.++
T Consensus 152 ~A~~VI~AdG~~s 164 (429)
T PRK10015 152 EANVVILADGVNS 164 (429)
T ss_pred ECCEEEEccCcch
Confidence 9999999999755
No 110
>PRK07190 hypothetical protein; Provisional
Probab=99.26 E-value=1.8e-10 Score=106.20 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=84.9
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------C----------CCCceEE
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------Y----------SYDRLRL 56 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~----------~~~~~~~ 56 (303)
|++ ..+||+||||||+|+++|..|+++|++|+|+|+.+.....-+. . .+.....
T Consensus 1 m~~--~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 1 MST--QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCC--ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 653 3579999999999999999999999999999998754211000 0 0000000
Q ss_pred ecCcccccCCC--C-CCCCC-C--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090 57 HLAKQFCQLPH--L-PFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (303)
Q Consensus 57 ~~~~~~~~~~~--~-~~~~~-~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (303)
........... + ..+.. . ....++..+.+.|.+.++..++++ +++++|++++.++ +.+.+.+.++
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g----- 149 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG----- 149 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence 00011100000 0 00000 0 112356677778888888777665 9999999998876 4466665443
Q ss_pred eeEEEEeeCEEEEccCCCC
Q 022090 131 EIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 131 ~~~~~~~ad~vIlAtG~~~ 149 (303)
.+ +.+++||.|+|.+|
T Consensus 150 --~~-v~a~~vVgADG~~S 165 (487)
T PRK07190 150 --ER-IQSRYVIGADGSRS 165 (487)
T ss_pred --cE-EEeCEEEECCCCCH
Confidence 47 89999999999766
No 111
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.26 E-value=8.9e-11 Score=105.83 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--CCC--------CceE----EecCcccccCCCCC---
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSY--------DRLR----LHLAKQFCQLPHLP--- 69 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--~~~--------~~~~----~~~~~~~~~~~~~~--- 69 (303)
.+||+||||||||++||+.|++.|++|+++|+.+.+|.--.. ..+ +... .........++...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999998877641110 000 0000 00000000001000
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 70 -FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 70 -~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
.+.......++..+.++|...+++.|.+. +.++.+..+..++ +...+....+. .+ +++++||.|+|.+
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~ 151 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN 151 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence 00000112358899999999999999877 8999999998876 33444443321 47 8999999999964
Q ss_pred C
Q 022090 149 T 149 (303)
Q Consensus 149 ~ 149 (303)
+
T Consensus 152 s 152 (396)
T COG0644 152 S 152 (396)
T ss_pred h
Confidence 4
No 112
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.25 E-value=3.1e-10 Score=106.60 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=86.0
Q ss_pred CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--------------CCCC----------ceE-Eec
Q 022090 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLR-LHL 58 (303)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--------------~~~~----------~~~-~~~ 58 (303)
.+..+||+|||||++|+++|..|++.|++|+|+|+.+......+. ...+ ... ...
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence 345689999999999999999999999999999998754321100 0000 000 000
Q ss_pred CcccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 59 AKQFCQLPHLPFP-SSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
......+...+.. ..++.+ .++..+..+|.+.+.+.+. ..++++++|++++.++ +.+++.+.+.++ ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~v~v~~~~~~g----~~~- 171 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD--DGVTLTVETPDG----PYT- 171 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC--CEEEEEEECCCC----cEE-
Confidence 1111111111100 111111 3566788888888776531 3458999999998765 456666554221 147
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+++|+||.|+|.+|.
T Consensus 172 i~ad~vVgADG~~S~ 186 (547)
T PRK08132 172 LEADWVIACDGARSP 186 (547)
T ss_pred EEeCEEEECCCCCcH
Confidence 899999999997664
No 113
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.25 E-value=1.1e-10 Score=105.14 Aligned_cols=133 Identities=19% Similarity=0.293 Sum_probs=84.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------------------ccCc-----CCCCceEEecCcc-
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKK-----YSYDRLRLHLAKQ- 61 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------------------~w~~-----~~~~~~~~~~~~~- 61 (303)
..+||+|||||++|+++|..|++.|++|+|+|+.+..+. .|.. ..+..+.+.....
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 457999999999999999999999999999999864321 1211 0111222211110
Q ss_pred ccc-----CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 62 FCQ-----LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 62 ~~~-----~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
... +........ +....++..+.+.+.+.+..++... +++++|++++.++ +.|.|++.++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 153 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT- 153 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence 000 000000000 1112456788888888777665333 7899999998765 5688877653 56
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+++|.||.|+|.+|.
T Consensus 154 ~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 154 LSARLVVGADGRNSP 168 (388)
T ss_pred EEEeEEEEecCCCch
Confidence 899999999997663
No 114
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.25 E-value=1.8e-10 Score=103.66 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=82.9
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC----ceEEec--Cccc-----ccCCCCCCCCCCCC-
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD----RLRLHL--AKQF-----CQLPHLPFPSSYPM- 76 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~----~~~~~~--~~~~-----~~~~~~~~~~~~~~- 76 (303)
||+|||||++|+++|..|++.|++|+|+|+++..++.+....+. .+.+.. .... ..++........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988776532211111 010000 0000 00010000001111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
..++..+.+++.+.+...++. .+..+|..+.... .+.|.|++.++ .+ ++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence 256788999998888877754 3466788887652 35677877653 46 89999999999765
No 115
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.24 E-value=1.5e-10 Score=104.63 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=84.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCC---------------------ccCc-----CCCCceEEec
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHL 58 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg---------------------~w~~-----~~~~~~~~~~ 58 (303)
++||+|||||++|+++|..|++.| ++|+|+|+.+.... .|.. .....+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 379999999999999999999995 99999999764210 1100 0011111111
Q ss_pred Ccc-------cccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090 59 AKQ-------FCQLPHLP-FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (303)
Q Consensus 59 ~~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (303)
... ...+.... ....+....++..+.+.|.+.+...++.. +++++|++++.++ +.+.|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g----- 151 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG----- 151 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC-----
Confidence 000 00000000 00011123567889999998888777655 8999999998765 5677777653
Q ss_pred eeEEEEeeCEEEEccCCCCC
Q 022090 131 EIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 131 ~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|+|.+|.
T Consensus 152 --~~-~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 --SV-LEARLLVAADGARSK 168 (403)
T ss_pred --CE-EEeCEEEEcCCCChH
Confidence 46 899999999997653
No 116
>PRK07045 putative monooxygenase; Reviewed
Probab=99.24 E-value=1.8e-10 Score=103.64 Aligned_cols=135 Identities=22% Similarity=0.279 Sum_probs=84.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC--ccCcC-------------------CCCceEEecCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS--IWKKY-------------------SYDRLRLHLAK 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg--~w~~~-------------------~~~~~~~~~~~ 60 (303)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. ++ .+... ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 4579999999999999999999999999999988754 21 11110 00111111111
Q ss_pred c-cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 61 ~-~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
. ...+..... +..+....++..+.+.+.+.+... ++ .++++++|++++.++++..+.|++.++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDADGTVTSVTLSDG-------ER-VA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EE
Confidence 0 110110000 011111245677888777766543 44 459999999998876333456776553 46 89
Q ss_pred eCEEEEccCCCCC
Q 022090 138 GRFLVVASGETTN 150 (303)
Q Consensus 138 ad~vIlAtG~~~~ 150 (303)
+|.||.|+|.+|.
T Consensus 154 ~~~vIgADG~~S~ 166 (388)
T PRK07045 154 PTVLVGADGARSM 166 (388)
T ss_pred CCEEEECCCCChH
Confidence 9999999998773
No 117
>PRK06185 hypothetical protein; Provisional
Probab=99.23 E-value=2.3e-10 Score=103.60 Aligned_cols=137 Identities=18% Similarity=0.351 Sum_probs=83.3
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-----CC--------------ccCcC------CCCceEEecC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----AS--------------IWKKY------SYDRLRLHLA 59 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-----gg--------------~w~~~------~~~~~~~~~~ 59 (303)
...+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..- .+..+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 35689999999999999999999999999999997532 11 11110 0111111111
Q ss_pred cc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 60 KQ-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 60 ~~-~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
.. . ..+...+.+..+..+.++..+.+.+.+.+... ++. ++++++|+++..++ +....|.+...++ ..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g----~~~- 155 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG----PGE- 155 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC----cEE-
Confidence 11 0 11111111111222356778888888877664 544 48899999998765 2222244432211 146
Q ss_pred EeeCEEEEccCCCC
Q 022090 136 YSGRFLVVASGETT 149 (303)
Q Consensus 136 ~~ad~vIlAtG~~~ 149 (303)
+.++.||.|+|.+|
T Consensus 156 i~a~~vI~AdG~~S 169 (407)
T PRK06185 156 IRADLVVGADGRHS 169 (407)
T ss_pred EEeCEEEECCCCch
Confidence 89999999999876
No 118
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.23 E-value=9.1e-11 Score=106.21 Aligned_cols=131 Identities=16% Similarity=0.264 Sum_probs=81.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-------------CC--------------ccCc----C--CCCce
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------------AS--------------IWKK----Y--SYDRL 54 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-------------gg--------------~w~~----~--~~~~~ 54 (303)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|.. . .+..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 69999999999999999999999999999997621 00 1100 0 01111
Q ss_pred EEecCccc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090 55 RLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (303)
Q Consensus 55 ~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (303)
........ ..+...... .......++..+.+.+.+.++..+++ +++++++++++.++ +.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG--DDWLLTLADG------ 152 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC--CeEEEEECCC------
Confidence 11111100 001000000 00011234567777777777666654 48899999998765 5588877654
Q ss_pred eEEEEeeCEEEEccCCCCC
Q 022090 132 IEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 132 ~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|+|.+|.
T Consensus 153 -~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 -RQ-LRAPLVVAADGANSA 169 (405)
T ss_pred -CE-EEeCEEEEecCCCch
Confidence 46 899999999998764
No 119
>PRK06126 hypothetical protein; Provisional
Probab=99.23 E-value=4.5e-10 Score=105.54 Aligned_cols=140 Identities=17% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc-------------------cCc---CCCC------ceE
Q 022090 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK---YSYD------RLR 55 (303)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~-------------------w~~---~~~~------~~~ 55 (303)
.+..++|+|||||++|+++|..|+++|++|+|+|+.+..... |.. ..++ ...
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~ 83 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAY 83 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceE
Confidence 345689999999999999999999999999999997642210 000 0000 000
Q ss_pred Ee--cCcccccCCC--C----CC--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCe
Q 022090 56 LH--LAKQFCQLPH--L----PF--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNM 117 (303)
Q Consensus 56 ~~--~~~~~~~~~~--~----~~--------~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~ 117 (303)
.. ....+..+.. . .. .. ......++..+...|.+.+++. +++. +++++|++++.++ +.
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~ 159 (545)
T PRK06126 84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--DG 159 (545)
T ss_pred EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--Ce
Confidence 00 0000000000 0 00 00 0012245677888888877764 5444 9999999998765 44
Q ss_pred EEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 118 WNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 118 ~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+++.+.+..++ +..+ +.+|+||.|+|.+|.
T Consensus 160 v~v~~~~~~~g--~~~~-i~ad~vVgADG~~S~ 189 (545)
T PRK06126 160 VTATVEDLDGG--ESLT-IRADYLVGCDGARSA 189 (545)
T ss_pred EEEEEEECCCC--cEEE-EEEEEEEecCCcchH
Confidence 66666542222 3357 899999999998763
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.22 E-value=2e-10 Score=103.25 Aligned_cols=133 Identities=21% Similarity=0.311 Sum_probs=86.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CCC---C----------------CccCc------CCCCceEEecCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCY---A----------------SIWKK------YSYDRLRLHLAK 60 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~~---g----------------g~w~~------~~~~~~~~~~~~ 60 (303)
.+||+|||||++|+++|..|++.|++|+|+|+. ... | |.+.. ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 479999999999999999999999999999998 211 1 01000 011111111111
Q ss_pred c-cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEe
Q 022090 61 Q-FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYS 137 (303)
Q Consensus 61 ~-~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ 137 (303)
. ...+...... .......++.++.+.|.+.+...+. +.++++++|+.++.++ +..++++. ++ ++ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~~~~~~~v~~~~~~~--~~v~v~l~~dG-------~~-~~ 150 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPN-VTLRFGAEVEAVEQDG--DGVTVTLSFDG-------ET-LD 150 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCC-cEEEcCceEEEEEEcC--CceEEEEcCCC-------cE-Ee
Confidence 1 1111111111 1112235688999999998887652 3348999999999887 45667776 43 47 89
Q ss_pred eCEEEEccCCCCC
Q 022090 138 GRFLVVASGETTN 150 (303)
Q Consensus 138 ad~vIlAtG~~~~ 150 (303)
||.||.|+|.+|.
T Consensus 151 a~llVgADG~~S~ 163 (387)
T COG0654 151 ADLLVGADGANSA 163 (387)
T ss_pred cCEEEECCCCchH
Confidence 9999999998773
No 121
>PRK06753 hypothetical protein; Provisional
Probab=99.22 E-value=2.6e-10 Score=102.07 Aligned_cols=127 Identities=19% Similarity=0.247 Sum_probs=81.1
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc-------------------cCc-----CCCCceEEecCccccc
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAKQFCQ 64 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~~ 64 (303)
+|+|||||++|+++|..|++.|++|+|+|+++..... |.. .....+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998754311 000 00111111111100 0
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 65 LPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 65 ~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
+...++... .....++..+.+.|.+.+.. ..++++++|++++.++ +.+.|++.++ .+ +.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vig 146 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCIG 146 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEEE
Confidence 001111111 11234677887777766542 2458999999998654 5678877664 56 89999999
Q ss_pred ccCCCCC
Q 022090 144 ASGETTN 150 (303)
Q Consensus 144 AtG~~~~ 150 (303)
|+|.+|.
T Consensus 147 adG~~S~ 153 (373)
T PRK06753 147 ADGIHSK 153 (373)
T ss_pred CCCcchH
Confidence 9997664
No 122
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.5e-10 Score=92.00 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=84.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC-CccCcC-CCCceEEecCcccc-cCCCCCCCCCCCCC--CCHHH
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYPMF--VSRAQ 82 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g-g~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 82 (303)
.||+|+||||+||+||+.|++.|.+|+|||++..+| |.|.-. .++.+.+..+.... .--..++.+.-..+ .+..+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 599999999999999999999999999999986655 588754 34555554443211 00111111111112 24566
Q ss_pred HHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCe------EEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNM------WNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 83 l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~------~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
+...+...+-+.+... +..+.|+++-..++... |+.....+-. +.... +++++||-|||+
T Consensus 111 ~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh--vDPl~-i~a~~VvDaTGH 176 (262)
T COG1635 111 FASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH--VDPLT-IRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhcccc--cCcce-eeEEEEEeCCCC
Confidence 6777776666677554 77788888876653221 3222211111 12256 899999999996
No 123
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.20 E-value=1.7e-10 Score=104.19 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=83.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC------ccCc--------CC----------CCceEEecC---
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YS----------YDRLRLHLA--- 59 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg------~w~~--------~~----------~~~~~~~~~--- 59 (303)
+.||+|||||++|+++|..|++.|++|+|+|+.+..+. .+.. .. ...+.....
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 47999999999999999999999999999999875432 1110 00 011111100
Q ss_pred cccccCCCC-CCCCC--CC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 60 KQFCQLPHL-PFPSS--YP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 60 ~~~~~~~~~-~~~~~--~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
.....++.. .+... .+ ....+.++.+.|.+.+...+ ...+++++++++++.++ +.+.+.+.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~~~~~~~v~~i~~~~--~~v~v~~~~g-------~~- 152 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHP-LVEFRTSTHVVGIEQDG--DGVTVFDQQG-------NR- 152 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcC-CcEEEeCCEEEEEecCC--CceEEEEcCC-------CE-
Confidence 000000000 00000 01 12467788888888776654 13348899999998654 4577776554 56
Q ss_pred EeeCEEEEccCCCCCC
Q 022090 136 YSGRFLVVASGETTNP 151 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~p 151 (303)
+.+|.||.|+|.+|..
T Consensus 153 ~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 153 WTGDALIGCDGVKSVV 168 (396)
T ss_pred EecCEEEECCCcChHH
Confidence 8999999999987643
No 124
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.19 E-value=1.3e-10 Score=95.21 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=79.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcc--------------------------
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ-------------------------- 61 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~-------------------------- 61 (303)
.+|+|||+|++|++||..|+..|.+|++|||...+||-...+.-+....+....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 479999999999999999999999999999999999854332222211111111
Q ss_pred --cccCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 62 --FCQLPHL---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 62 --~~~~~~~---~~~~~--~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
...+... +.++. |...+.-..+..++. -++++ .++++|+.+...+ +.|++..+++. ..
T Consensus 82 ~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~ 146 (331)
T COG3380 82 PAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH 146 (331)
T ss_pred ccccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC------cc
Confidence 1111111 11111 111222233333222 24455 8999999998875 78999997753 45
Q ss_pred EEeeCEEEEccCC
Q 022090 135 YYSGRFLVVASGE 147 (303)
Q Consensus 135 ~~~ad~vIlAtG~ 147 (303)
..+|.||+|.=.
T Consensus 147 -~~~d~vvla~PA 158 (331)
T COG3380 147 -TQFDDVVLAIPA 158 (331)
T ss_pred -cccceEEEecCC
Confidence 789999999863
No 125
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.19 E-value=3e-10 Score=102.02 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=82.7
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC--------CccCc-----------CCCCc-----------eEEec
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--------SIWKK-----------YSYDR-----------LRLHL 58 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g--------g~w~~-----------~~~~~-----------~~~~~ 58 (303)
||+|||||++|+++|..|+++|++|+|+|+.+..+ ..... ..++. +....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999987532 10100 00111 11111
Q ss_pred Ccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 59 ~~~--~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
... ...+....... ......++..+.+.|.+.+.+.+ .. ++++++|++++..+ +.+.+.+.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~--~~~~v~~~~g-------~~ 149 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS--DHVELTLDDG-------QQ 149 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC--CeeEEEECCC-------CE
Confidence 100 00011000000 01112457788888888887765 44 48999999998765 5677777654 46
Q ss_pred EEeeCEEEEccCCCCC
Q 022090 135 YYSGRFLVVASGETTN 150 (303)
Q Consensus 135 ~~~ad~vIlAtG~~~~ 150 (303)
+.+|.||.|+|.+|.
T Consensus 150 -~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 150 -LRARLLVGADGANSK 164 (385)
T ss_pred -EEeeEEEEeCCCCCH
Confidence 899999999997663
No 126
>PRK07588 hypothetical protein; Provisional
Probab=99.19 E-value=2.6e-10 Score=102.73 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=82.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC--C-c---cCcC------------------CCCceEEecCc--c
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q 61 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g--g-~---w~~~------------------~~~~~~~~~~~--~ 61 (303)
.||+|||||++|+++|..|++.|++|+|+|+.+... | . |... ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 389999999999999999999999999999876432 1 1 1110 01111111111 1
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090 62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (303)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (303)
...++...+..... ...++..+...|.+.+.. + ..++++++|++++.++ +.++|.+.++ .+ +++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence 11111111111111 124567777777664432 3 4459999999998765 5688887764 46 789
Q ss_pred CEEEEccCCCCCCC
Q 022090 139 RFLVVASGETTNPF 152 (303)
Q Consensus 139 d~vIlAtG~~~~p~ 152 (303)
|.||.|+|.+|.-+
T Consensus 148 d~vIgADG~~S~vR 161 (391)
T PRK07588 148 DLVIGADGLHSHVR 161 (391)
T ss_pred CEEEECCCCCccch
Confidence 99999999877533
No 127
>PRK07538 hypothetical protein; Provisional
Probab=99.19 E-value=2.1e-09 Score=97.61 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=82.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----Cc--cCc--------CC----------CCceEEecCc--c
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YS----------YDRLRLHLAK--Q 61 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g~--w~~--------~~----------~~~~~~~~~~--~ 61 (303)
.||+|||||++|+++|..|++.|++|+|||+.+... |. +.. .. .......... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 389999999999999999999999999999987432 11 000 00 0111111110 0
Q ss_pred cccCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 62 FCQLPHLPFPS--SYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 62 ~~~~~~~~~~~--~~~~-~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
....+ ..... .++. ..++..+.+.|.+.+.+ .+. ..++++++|++++.++ +...+.+.++..+ +..+ ++
T Consensus 81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~ 153 (413)
T PRK07538 81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR 153 (413)
T ss_pred Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence 00000 00000 1111 24678888888777654 453 2359999999998765 3345555443221 2257 89
Q ss_pred eCEEEEccCCCCC
Q 022090 138 GRFLVVASGETTN 150 (303)
Q Consensus 138 ad~vIlAtG~~~~ 150 (303)
+|.||.|+|.+|.
T Consensus 154 adlvIgADG~~S~ 166 (413)
T PRK07538 154 GDVLIGADGIHSA 166 (413)
T ss_pred eeEEEECCCCCHH
Confidence 9999999998774
No 128
>PRK11445 putative oxidoreductase; Provisional
Probab=99.18 E-value=5.7e-10 Score=99.03 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC---------CC-ccCc--------CCC-CceEEecCcc----cc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------AS-IWKK--------YSY-DRLRLHLAKQ----FC 63 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~---------gg-~w~~--------~~~-~~~~~~~~~~----~~ 63 (303)
++||+||||||+|+++|..|++. ++|+++|+.+.. |+ .+.. ... +......+.. ..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 37999999999999999999999 999999987642 21 1110 000 0000000000 00
Q ss_pred cCCC-CCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEE
Q 022090 64 QLPH-LPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (303)
Q Consensus 64 ~~~~-~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~v 141 (303)
.+.. .......+. ..++.++.+.+.+.+ ..+++ +++++.+++++.++ +.|.|...+.+ +..+ +++|.|
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~v 149 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYL 149 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEE
Confidence 0000 000001111 256888888777643 34544 48999999998765 56888764321 2247 899999
Q ss_pred EEccCCCCC
Q 022090 142 VVASGETTN 150 (303)
Q Consensus 142 IlAtG~~~~ 150 (303)
|.|+|.+|.
T Consensus 150 V~AdG~~S~ 158 (351)
T PRK11445 150 VGADGANSM 158 (351)
T ss_pred EECCCCCcH
Confidence 999998764
No 129
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.18 E-value=4.2e-10 Score=100.76 Aligned_cols=131 Identities=15% Similarity=0.254 Sum_probs=84.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC-------C----------------CccCc-----CCCCceEEecC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA 59 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~-------g----------------g~w~~-----~~~~~~~~~~~ 59 (303)
+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 68999999999999999999999999999986311 1 11210 01222222111
Q ss_pred c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
. ....+.... ........++.++...|.+.+...+. ..++++++++++..++ +.+.|.+.+ .+ ++
T Consensus 82 ~g~~~~~~~~~~-~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~ 148 (374)
T PRK06617 82 KASEILDLRNDA-DAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK 148 (374)
T ss_pred CCceEEEecCCC-CCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence 1 111111100 00011224688899999888877652 3347899999997765 557777754 36 89
Q ss_pred eCEEEEccCCCCCC
Q 022090 138 GRFLVVASGETTNP 151 (303)
Q Consensus 138 ad~vIlAtG~~~~p 151 (303)
+|.||.|+|.+|.-
T Consensus 149 adlvIgADG~~S~v 162 (374)
T PRK06617 149 CNLLIICDGANSKV 162 (374)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987753
No 130
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.18 E-value=3.5e-10 Score=101.93 Aligned_cols=133 Identities=19% Similarity=0.303 Sum_probs=82.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC---------------------ccCc------CCCCce
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS---------------------IWKK------YSYDRL 54 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg---------------------~w~~------~~~~~~ 54 (303)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. ++ .|.. ..+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4589999999999999999999999999999987521 11 1110 001111
Q ss_pred EEe-cCcccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCce
Q 022090 55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (303)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (303)
... .......+....... ......++..+.+.|.+.++.. ++.. +++++|+++..++ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 110 000000000000000 0011245677888887777665 5544 8899999987665 5577877653
Q ss_pred eEEEEeeCEEEEccCCCCC
Q 022090 132 IEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 132 ~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +++|.||.|+|.+|.
T Consensus 154 -~~-~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 -EE-IQAKLVIGADGANSQ 170 (391)
T ss_pred -CE-EEeCEEEEeCCCCch
Confidence 46 899999999997663
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.16 E-value=5.3e-10 Score=100.60 Aligned_cols=130 Identities=14% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---CccCcC----------------CCCc-----------eEE
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKY----------------SYDR-----------LRL 56 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g~w~~~----------------~~~~-----------~~~ 56 (303)
.+||+|||||++|+++|..|++.|++|+|+|+.+... ..|..+ ..+. +..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 4799999999999999999999999999999987542 122210 0000 000
Q ss_pred ecCcccccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090 57 HLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (303)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (303)
... ....+.........+ ...++..+.+.+.+.++..+ +.. + +++|+++...+ +.+.|++.++
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g------- 151 (388)
T PRK07608 85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG------- 151 (388)
T ss_pred EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC-------
Confidence 000 000000000001111 11346788888888887765 443 5 88899987655 5577777654
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022090 133 EEYYSGRFLVVASGETTN 150 (303)
Q Consensus 133 ~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QV-LRADLVVGADGAHSW 168 (388)
T ss_pred CE-EEeeEEEEeCCCCch
Confidence 46 899999999997664
No 132
>PRK09126 hypothetical protein; Provisional
Probab=99.16 E-value=6.6e-10 Score=100.13 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=79.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC--------CC---ccCc--------CCCC-----------ceEE
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYD-----------RLRL 56 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~--------gg---~w~~--------~~~~-----------~~~~ 56 (303)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. |. .+.. ..++ ....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 479999999999999999999999999999998642 21 1100 0111 1111
Q ss_pred ecCccc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (303)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (303)
...... ..++.... ........++..+.+.+.+.+.. .++. ++++++|++++.++ +.+.|.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 110000 00100000 00011113455666666555433 4544 49999999998765 4577777654
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022090 133 EEYYSGRFLVVASGETTN 150 (303)
Q Consensus 133 ~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 152 RR-LTARLLVAADSRFSA 168 (392)
T ss_pred CE-EEeCEEEEeCCCCch
Confidence 46 899999999997664
No 133
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.16 E-value=1e-09 Score=98.92 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC----ccCcC--------------CCCceEEecCcccc-cCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IWKKY--------------SYDRLRLHLAKQFC-QLPHL 68 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg----~w~~~--------------~~~~~~~~~~~~~~-~~~~~ 68 (303)
+||+||||||+|+++|..|+++|++|+++|+....+. ..... ....+....+.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 4899999999999999999999999999999754322 11100 01111111111100 00100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEe-CCCCeEEEEEeecC----CCCceeEEEEeeCEEEE
Q 022090 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD-EATNMWNVKASNLL----SPGREIEEYYSGRFLVV 143 (303)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~-~~~~~~~v~~~~~~----~~~~~~~~~~~ad~vIl 143 (303)
..+..+....++..+.++|.+.+.+.|.+. +.. +++++... ...+.+.|+..... .+ +..+ ++++.||.
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg 154 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG 154 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence 001111123678899999999998888765 555 46666542 22355666653211 01 2257 89999999
Q ss_pred ccCCCC
Q 022090 144 ASGETT 149 (303)
Q Consensus 144 AtG~~~ 149 (303)
|+|.+|
T Consensus 155 ADG~~S 160 (398)
T TIGR02028 155 ADGANS 160 (398)
T ss_pred CCCcch
Confidence 999765
No 134
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.16 E-value=6.5e-10 Score=99.40 Aligned_cols=122 Identities=24% Similarity=0.324 Sum_probs=82.2
Q ss_pred cEEEECCcHHHHHHHHHH--hhCCCCeEEEecCCCC--CC--ccCcC-------------CCCceEEecCcccccCCCCC
Q 022090 9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP 69 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l--~~~g~~v~iie~~~~~--gg--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 69 (303)
||+|||||+||+++|.+| ++.|.+|+|+|++... +. +|..- .++...+..+..-...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 799999999999999999 7779999999998765 22 23221 1111111111110000
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 70 FPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 70 ~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
..++ ...++..+.+++.+.+...+ . ++++..|++|+..+ +.+.|.+.++ .+ ++++.||.|+|..
T Consensus 77 --~~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 77 --IDYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS 141 (374)
T ss_pred --cccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence 0011 13578889999888887433 2 38889999998876 4677777765 57 8999999999954
Q ss_pred C
Q 022090 149 T 149 (303)
Q Consensus 149 ~ 149 (303)
+
T Consensus 142 ~ 142 (374)
T PF05834_consen 142 S 142 (374)
T ss_pred c
Confidence 3
No 135
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.16 E-value=8.9e-10 Score=100.56 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=82.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CCccCcCC--------------CCceEEecCccc-ccCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKYS--------------YDRLRLHLAKQF-CQLPH 67 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg~w~~~~--------------~~~~~~~~~~~~-~~~~~ 67 (303)
.+||+||||||+|+++|..|++.|++|+|+|+.... ||...... ...+.+..+... ..+..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 589999999999999999999999999999987421 21100000 011111111110 00110
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeC-CCCeEEEEEeecC----CCCceeEEEEeeCEEE
Q 022090 68 LPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFLV 142 (303)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~----~~~~~~~~~~~ad~vI 142 (303)
...+..+-...++..+.++|.+.+.+.|.+. +.. .+++++... .++.+.|.+.+.. .+ +..+ ++++.||
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~VI 192 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAVI 192 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEEE
Confidence 0001011112688999999999998888764 544 577776432 2345667664320 01 2257 8999999
Q ss_pred EccCCCC
Q 022090 143 VASGETT 149 (303)
Q Consensus 143 lAtG~~~ 149 (303)
.|+|.+|
T Consensus 193 gADG~~S 199 (450)
T PLN00093 193 GADGANS 199 (450)
T ss_pred EcCCcch
Confidence 9999766
No 136
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.16 E-value=3.9e-10 Score=103.06 Aligned_cols=136 Identities=17% Similarity=0.275 Sum_probs=82.9
Q ss_pred CcEEEECCcHHHHHHHHHHhh----CCCCeEEEecCC--CCC--------C---------------------ccCc----
Q 022090 8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKK---- 48 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~----~g~~v~iie~~~--~~g--------g---------------------~w~~---- 48 (303)
+||+|||||++|+++|..|++ .|++|+|+|+.+ ..- + .|..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999943 211 1 1110
Q ss_pred --CCCCceEEecCcc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceeEeCeEEEEEEEe-----CCCCeE
Q 022090 49 --YSYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW 118 (303)
Q Consensus 49 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l-~~~i~~~~~V~~i~~~-----~~~~~~ 118 (303)
..+..+....... ...+.............++..+...|.+.+...+- ...++++++|++++.+ +.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 0011111111110 01111110000011124677888888887776541 2345899999999753 223456
Q ss_pred EEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (303)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p 151 (303)
+|.+.++ ++ +++|.||.|+|.+|.-
T Consensus 161 ~v~~~~g-------~~-i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDG-------QV-LYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCC-------CE-EEeeEEEEecCCCChh
Confidence 7777654 57 8999999999987743
No 137
>PRK07236 hypothetical protein; Provisional
Probab=99.15 E-value=1.7e-09 Score=97.26 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC----CC-c--cCc--------CCCCceEEecCc---cccc---
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS-I--WKK--------YSYDRLRLHLAK---QFCQ--- 64 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~----gg-~--w~~--------~~~~~~~~~~~~---~~~~--- 64 (303)
...+|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . +.. ...+......+. .+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4579999999999999999999999999999997632 11 0 100 000000000000 0000
Q ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090 65 --LPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (303)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (303)
+...+.+ .....+..+.+.+.+ .+. ...++++++|++++.++ +.++|.+.++ .+ +.+|.||
T Consensus 85 ~~~~~~~~~---~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~vI 147 (386)
T PRK07236 85 RVVQRRPMP---QTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADLLV 147 (386)
T ss_pred CEeeccCCC---ccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEE
Confidence 0000000 011244455554443 222 12458999999998765 5678887764 56 8999999
Q ss_pred EccCCCCCC
Q 022090 143 VASGETTNP 151 (303)
Q Consensus 143 lAtG~~~~p 151 (303)
.|.|.+|.-
T Consensus 148 gADG~~S~v 156 (386)
T PRK07236 148 GADGGRSTV 156 (386)
T ss_pred ECCCCCchH
Confidence 999987753
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.15 E-value=1.1e-09 Score=98.60 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC---C----C--------------ccCc-----CCCCceEEecCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK 60 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~---g----g--------------~w~~-----~~~~~~~~~~~~ 60 (303)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + + .|.. .....+.+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 369999999999999999999999999999998641 1 1 1100 011112111111
Q ss_pred ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090 61 QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139 (303)
Q Consensus 61 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 139 (303)
....+.......... ...++..+.+.+.+.+...+.+. ++++++++++..+ .+...|++...+ +..+ +++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G----~~~~-i~ad 153 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG----EEHR-LDCD 153 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC----eEEE-EEeC
Confidence 111111100000000 11234566666666666666555 9999999887522 233445553211 3357 8999
Q ss_pred EEEEccCCCCCC
Q 022090 140 FLVVASGETTNP 151 (303)
Q Consensus 140 ~vIlAtG~~~~p 151 (303)
.||.|+|.+|.-
T Consensus 154 ~vVgADG~~S~v 165 (392)
T PRK08243 154 FIAGCDGFHGVS 165 (392)
T ss_pred EEEECCCCCCch
Confidence 999999987743
No 139
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.15 E-value=3.6e-10 Score=101.50 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=81.6
Q ss_pred cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCC----------ccCc--------CCCC----------ceEEecC
Q 022090 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYD----------RLRLHLA 59 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg----------~w~~--------~~~~----------~~~~~~~ 59 (303)
||+|||||++|+++|..|+++| ++|+|+|+.+...- .+.. ..++ .......
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999764211 1100 0000 1111000
Q ss_pred cc--cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 60 KQ--FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 60 ~~--~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
.. ...+....+...... ..++.++.+.|.+.+... +++. +++++|+++..++ +.++|.+.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG-------QQ- 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence 00 000000000000011 145778888888888764 6555 8899999998765 5577877653 46
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+.+|.||.|+|.+|.
T Consensus 149 ~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 149 LRAKLLIAADGANSK 163 (382)
T ss_pred EEeeEEEEecCCChH
Confidence 899999999997663
No 140
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.13 E-value=9.9e-10 Score=99.47 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=79.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC-CC--CC---------------------CccCcC------CCCceEE
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL 56 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~-~~--~g---------------------g~w~~~------~~~~~~~ 56 (303)
.+||+|||||++|+++|..|++.|++|+|+|+. +. .+ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999986 21 11 111110 0111111
Q ss_pred ecCccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCcee
Q 022090 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (303)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (303)
...... ..+....... .......+..+...|.+.+... ++. ++++++|++++.++ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 111100 0010000000 0011123556666666666553 344 48899999998765 4567777654
Q ss_pred EEEEeeCEEEEccCCCCC
Q 022090 133 EEYYSGRFLVVASGETTN 150 (303)
Q Consensus 133 ~~~~~ad~vIlAtG~~~~ 150 (303)
++ +++|.||.|+|.+|.
T Consensus 153 ~~-~~a~lvIgADG~~S~ 169 (405)
T PRK08850 153 QA-LTAKLVVGADGANSW 169 (405)
T ss_pred CE-EEeCEEEEeCCCCCh
Confidence 56 899999999997664
No 141
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.12 E-value=8.6e-10 Score=99.43 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=82.3
Q ss_pred EEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEec---Ccc---------------cccCC------
Q 022090 11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL---AKQ---------------FCQLP------ 66 (303)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~---~~~---------------~~~~~------ 66 (303)
+|||||++|+++|..|++.|.+|+|+|+++..|+.+....--.+.... ... +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998887643211000000000 000 00000
Q ss_pred -----CCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEE
Q 022090 67 -----HLPFP--S---SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (303)
Q Consensus 67 -----~~~~~--~---~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (303)
..++. . .++.......+.+.+.+.+++.++.. ++++.|+++...+ +.|.+.... .. +
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i 147 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG--------GE-Y 147 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC--------cE-E
Confidence 00000 0 01111235778888888888888665 8999999997654 567776632 46 8
Q ss_pred eeCEEEEccCCCCCC
Q 022090 137 SGRFLVVASGETTNP 151 (303)
Q Consensus 137 ~ad~vIlAtG~~~~p 151 (303)
.+|.||+|+|..+.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999976644
No 142
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.12 E-value=3.1e-09 Score=101.03 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=86.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCC--C----ccCc-----------------C-CCCceEEecCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYA--S----IWKK-----------------Y-SYDRLRLHLAK 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~g--g----~w~~-----------------~-~~~~~~~~~~~ 60 (303)
..+||+||||||+||++|..|++. |++|+|+|+.+... | .+.. . ....+....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 467999999999999999999995 99999999876321 1 1100 0 00111111100
Q ss_pred -----ccc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecC---
Q 022090 61 -----QFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL--- 126 (303)
Q Consensus 61 -----~~~---~~~~~~~~-~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~--- 126 (303)
.+. .+...+.. ..++ ...++..+.+.|.+.+...+....+++++++++++.++.. ...+|++.+..
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 000 00000000 0111 1245677888888888776654445889999999876422 34667776421
Q ss_pred CCCceeEEEEeeCEEEEccCCCCC
Q 022090 127 SPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 127 ~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++ +.++ +++|+||.|+|.+|.
T Consensus 191 ~g--~~~t-v~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EG--EEET-VRAKYVVGCDGARSR 211 (634)
T ss_pred CC--ceEE-EEeCEEEECCCCchH
Confidence 11 2357 899999999998774
No 143
>PLN02697 lycopene epsilon cyclase
Probab=99.12 E-value=1.8e-09 Score=99.73 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---CccCcCCCCceEEec------CcccccCCCC-CCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRLHL------AKQFCQLPHL-PFPSSYP 75 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g~w~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~ 75 (303)
..+||+|||||++|+++|..|++.|++|+++|+..... |.|... ...+.+.. +.....++.. +.....+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 35899999999999999999999999999999864433 344321 11110000 0000000000 0000001
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEE-EEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 76 -MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 76 -~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
...++..+.+.+.+.+...++. .++++|+.+..++ +.+.+ ...++ .+ +.++.||+|+|..+
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence 1257888889998888777754 4677898887654 33443 33332 56 89999999999866
No 144
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.11 E-value=1.5e-09 Score=97.75 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=77.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC------C-C-ccCc--------C----------CCCceEEecCcc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------Y----------SYDRLRLHLAKQ 61 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~------g-g-~w~~--------~----------~~~~~~~~~~~~ 61 (303)
+||+|||||++|+++|..|++.|++|+|+|+.+.. + + .+.. . ....+.......
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 69999999999999999999999999999998741 1 1 1100 0 011111111111
Q ss_pred cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEe-ecCCCCceeEEEEeeC
Q 022090 62 FCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYSGR 139 (303)
Q Consensus 62 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ad 139 (303)
...+.........+. ...+..+...|.+.+...+... +++++++.+...+ .....|++. ++ +..+ +++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~-i~ad 153 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDG-----ERHR-LDCD 153 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECC-----eEEE-EEeC
Confidence 111110000000010 1134456666666666666544 8888877765422 133456664 33 2247 8999
Q ss_pred EEEEccCCCCC
Q 022090 140 FLVVASGETTN 150 (303)
Q Consensus 140 ~vIlAtG~~~~ 150 (303)
.||.|+|.+|.
T Consensus 154 lvIGADG~~S~ 164 (390)
T TIGR02360 154 FIAGCDGFHGV 164 (390)
T ss_pred EEEECCCCchh
Confidence 99999998774
No 145
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=1.6e-09 Score=97.68 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCC-----C------CccCc--------CCCCc----------e
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYDR----------L 54 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~-----g------g~w~~--------~~~~~----------~ 54 (303)
.+||+|||||++|+++|..|+++ |++|+|+|+.... + +.+.. ..++. +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 9999999995211 0 01100 01111 1
Q ss_pred EEecCcccc--cCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCc
Q 022090 55 RLHLAKQFC--QLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (303)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (303)
......... .+.......... ....+..+...+.+.+... ++. ++++++|+++...+ +.|.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 100000000 000000000000 1234566667776666543 444 48899999997654 5688877654
Q ss_pred eeEEEEeeCEEEEccCCCC
Q 022090 131 EIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 131 ~~~~~~~ad~vIlAtG~~~ 149 (303)
.. +.+|.||.|+|.++
T Consensus 154 --~~-~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 --ET-LTGRLLVAADGSHS 169 (395)
T ss_pred --CE-EEeCEEEEecCCCh
Confidence 46 89999999999765
No 146
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.09 E-value=1.9e-09 Score=97.48 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=82.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC---C---ccCc--------CCCC----------ceEEecCccc-
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S---IWKK--------YSYD----------RLRLHLAKQF- 62 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g---g---~w~~--------~~~~----------~~~~~~~~~~- 62 (303)
.+|+|||||++|+++|..|++.|++|+|+|+.+... . .+.. ..++ .+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 589999999999999999999999999999987532 1 0110 0000 1111100000
Q ss_pred --ccCCCCCCC-CCC-CC--CCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEE
Q 022090 63 --CQLPHLPFP-SSY-PM--FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (303)
Q Consensus 63 --~~~~~~~~~-~~~-~~--~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (303)
......... ..+ .. ..++..+.+.|.+.+... ++. ++++++|++++.++ +.+++++.++.++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~- 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG--NSITATIIRTNSV----ET- 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence 000000000 000 11 236788888888877653 444 48999999997654 5577776543322 46
Q ss_pred EeeCEEEEccCCCCC
Q 022090 136 YSGRFLVVASGETTN 150 (303)
Q Consensus 136 ~~ad~vIlAtG~~~~ 150 (303)
+++|.||.|+|.+|.
T Consensus 154 ~~adlvIgADG~~S~ 168 (400)
T PRK06475 154 VSAAYLIACDGVWSM 168 (400)
T ss_pred EecCEEEECCCccHh
Confidence 899999999998774
No 147
>PRK05868 hypothetical protein; Validated
Probab=99.09 E-value=3.2e-09 Score=94.97 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=77.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc------cCc------------------CCCCceEEecCcc--
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK------------------YSYDRLRLHLAKQ-- 61 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~------w~~------------------~~~~~~~~~~~~~-- 61 (303)
+||+|||||++|+++|..|++.|++|+|+|+.+..... +.. .....+.......
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 58999999999999999999999999999998654310 000 0111111111110
Q ss_pred cccCCC-CCCCCC--CCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 62 FCQLPH-LPFPSS--YPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 62 ~~~~~~-~~~~~~--~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
...... .+.... .+. ...+.++.+.+.+.+ ..+ ..++++++|++++.++ +..+|++.++ .+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~--v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPS--VEYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCC--cEEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence 000000 000000 000 112455555544322 224 3459999999997654 5677877765 46 79
Q ss_pred eCEEEEccCCCCCC
Q 022090 138 GRFLVVASGETTNP 151 (303)
Q Consensus 138 ad~vIlAtG~~~~p 151 (303)
+|.||.|+|.+|.-
T Consensus 149 adlvIgADG~~S~v 162 (372)
T PRK05868 149 FDLVIGADGLHSNV 162 (372)
T ss_pred eCEEEECCCCCchH
Confidence 99999999987743
No 148
>PRK06996 hypothetical protein; Provisional
Probab=99.09 E-value=1.7e-09 Score=97.76 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=83.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCC----CCeEEEecCCCCC---------------------CccCcCCC--CceEEec
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSY--DRLRLHL 58 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g----~~v~iie~~~~~g---------------------g~w~~~~~--~~~~~~~ 58 (303)
..+||+||||||+|+++|..|++.| .+|+++|+.+... |.|..... ..+....
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4579999999999999999999987 4699999975221 12221111 1111111
Q ss_pred Ccc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 59 AKQ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 59 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
... .....+...+. .....++..+.+.|.+.+...++.. ++++++++++.+. +.+++.+.++.++ .+
T Consensus 90 ~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g~----~~ 160 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQGA----RT 160 (398)
T ss_pred CCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCcc----eE
Confidence 000 00011111110 0112467889999998888877544 8899999987654 5678877654221 57
Q ss_pred EEeeCEEEEccCC
Q 022090 135 YYSGRFLVVASGE 147 (303)
Q Consensus 135 ~~~ad~vIlAtG~ 147 (303)
+++|.||.|+|.
T Consensus 161 -i~a~lvIgADG~ 172 (398)
T PRK06996 161 -LRARIAVQAEGG 172 (398)
T ss_pred -EeeeEEEECCCC
Confidence 899999999995
No 149
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=1.7e-09 Score=97.15 Aligned_cols=132 Identities=12% Similarity=0.138 Sum_probs=78.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-----CC--C-----ccCc--------CCCCce-----------EE
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC-----YA--S-----IWKK--------YSYDRL-----------RL 56 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-----~g--g-----~w~~--------~~~~~~-----------~~ 56 (303)
+||+|||||++|+++|..|++.|++|+|||+.+. .| + .+.. ..++.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998641 11 0 1110 011111 10
Q ss_pred ecC-cccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 57 HLA-KQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 57 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
... .....+....... .......+..+...+.+.+...+ ...++++++|++++.++ +.++|++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~-~i~i~~~~~v~~~~~~~--~~~~v~~~~g-------~~ 153 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYP-NLTLMCPEKLADLEFSA--EGNRVTLESG-------AE 153 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCC-CeEEECCCceeEEEEcC--CeEEEEECCC-------CE
Confidence 000 0000000000000 00111233455555655555442 23448899999998765 4577887764 56
Q ss_pred EEeeCEEEEccCCCCC
Q 022090 135 YYSGRFLVVASGETTN 150 (303)
Q Consensus 135 ~~~ad~vIlAtG~~~~ 150 (303)
+++|.||.|+|.+|.
T Consensus 154 -~~~~lvIgADG~~S~ 168 (384)
T PRK08849 154 -IEAKWVIGADGANSQ 168 (384)
T ss_pred -EEeeEEEEecCCCch
Confidence 899999999998774
No 150
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.08 E-value=1.1e-09 Score=97.07 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
.+...+...+.+.+++.|.+. +.+++|++++.++ +.|+ |.+.+ .. +.+|.||+|+|.++
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccc
Confidence 346889999999999888666 9999999999887 6677 88876 46 89999999999644
No 151
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.06 E-value=2.4e-09 Score=97.26 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=78.8
Q ss_pred cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCc------cCc--------CCCC--------------ceEEec-
Q 022090 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYD--------------RLRLHL- 58 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~------w~~--------~~~~--------------~~~~~~- 58 (303)
+|+|||||++||++|..|+++| ++|+|+|+.+..+.. +.. ...+ ......
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 7999999999999999999998 599999998765421 111 0000 000000
Q ss_pred CcccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEe
Q 022090 59 AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (303)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (303)
......+.........+ ....+.++.+.|.+.+.. ..++++++|++++..+ +.|.|.+.++ .+ ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 147 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-YR 147 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-EE
Confidence 00000000000000111 124567777777665432 2348899999998765 5588888764 46 89
Q ss_pred eCEEEEccCCCCC
Q 022090 138 GRFLVVASGETTN 150 (303)
Q Consensus 138 ad~vIlAtG~~~~ 150 (303)
+|.||+|+|.+|.
T Consensus 148 ad~vVgADG~~S~ 160 (414)
T TIGR03219 148 CDLLIGADGIKSA 160 (414)
T ss_pred eeEEEECCCccHH
Confidence 9999999998764
No 152
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.04 E-value=8.9e-09 Score=94.23 Aligned_cols=136 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCCCCccC--------cCC-------C-Cce-------------EEe-
Q 022090 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------Y-DRL-------------RLH- 57 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~gg~w~--------~~~-------~-~~~-------------~~~- 57 (303)
||+|||+|.+|+++|..++++| .+|+|+||.+..||.-. ... . ... ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999887665311 100 0 000 000
Q ss_pred --------cC----cccc-cCCC----------CCCCCC-CC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEE
Q 022090 58 --------LA----KQFC-QLPH----------LPFPSS-YP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASY 111 (303)
Q Consensus 58 --------~~----~~~~-~~~~----------~~~~~~-~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~ 111 (303)
.. ..+. .... ..++.. .+ .......+.+.+.+.+++.+++. ++++.|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeEE
Confidence 00 0000 0000 000000 00 11244678888888888888765 99999999987
Q ss_pred eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+++...+.|...+..+ +... +.++.||+|||.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence 6533344444443211 2245 789999999997664
No 153
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.04 E-value=3e-09 Score=85.09 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=75.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC-ccCcC-CCCceEEecCcccc----cCCCCCCCCCCCCCCCH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR 80 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (303)
.+||+||||||+||+||+.|++.|++|++||++..+|| .|... .++.+.+..+.... ..++.++.+. -...+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g-~~v~d~ 95 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG-YYVADS 95 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE-EEES-H
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe-EEEEcH
Confidence 47999999999999999999999999999999887775 68653 46666665543211 1111111110 011356
Q ss_pred HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEe------ecCCCCceeEEEEeeCEEEEccCC
Q 022090 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKAS------NLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~------~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
.++...|...+-+.|... +..+.|+++-..++ ++. -|..+ .+.. ..... ++++.||-|||+
T Consensus 96 ~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glH--vDPl~-i~ak~ViDaTGH 163 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLH--VDPLT-IRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T---B-EE-EEESEEEE---S
T ss_pred HHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcC--CCcce-EEEeEEEeCCCC
Confidence 677777777666666554 77788888876652 221 12211 1101 12257 899999999996
No 154
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=8.1e-09 Score=95.95 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
+...+...+...+...|... +.+++|+++..++ +.|.|.+.++. + ++.+ +.++.||.|+|.++
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~-g--~~~~-i~a~~VVnAaG~wa 215 (502)
T PRK13369 153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD-G--ETRT-VRARALVNAAGPWV 215 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC-C--CEEE-EEecEEEECCCccH
Confidence 34556666666677778665 8889999998764 56888776643 2 3357 89999999999755
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.02 E-value=6e-09 Score=71.68 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=64.3
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD 88 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 88 (303)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+... -..++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~---------------------------------~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG---------------------------------FDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT---------------------------------SSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh---------------------------------cCHHHHHHHH
Confidence 5899999999999999999999999999998864211 1136778888
Q ss_pred HHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee
Q 022090 89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN 124 (303)
Q Consensus 89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 124 (303)
+..++.+++. ++++.+++++.+++ + .+|++++
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~~-~-~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDGD-G-VEVTLED 79 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEETT-S-EEEEEET
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeCC-E-EEEEEec
Confidence 8888888766 99999999998873 3 5577765
No 156
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.02 E-value=1.1e-08 Score=95.11 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
...+||+|||||+.|+++|..|+++|.+|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3468999999999999999999999999999999875544
No 157
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.01 E-value=2.3e-10 Score=104.09 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=35.3
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCC---CceEEe------c----CcccccCCCCCCC--CC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY---DRLRLH------L----AKQFCQLPHLPFP--SS 73 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~---~~~~~~------~----~~~~~~~~~~~~~--~~ 73 (303)
||+|||||++|++||..+++.|.+|+|+|+...+||....... ...... . ...+......+.+ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999997654321 111100 0 0000000000000 00
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 74 ~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
+ ....+...+...+.+.+.+.+++. ++++.|.++..++ ...+.|.+.+..+ ..+ +.++.+|-|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g----~~~-i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSG----RKE-IRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-ccccccccccccc----ccc-cccccccccccc
Confidence 0 012344566667777777778777 9999999998765 3345565554221 167 899999999994
No 158
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.00 E-value=2.4e-08 Score=92.79 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=36.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 357999999999999999999999999999999987776
No 159
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.00 E-value=6.6e-09 Score=93.24 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
+...+...+.+.++..+... +.+++|+++..++ +.+.|.+.+ .+ +.+|.||+|+|.++
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWT 200 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcch
Confidence 45677777877788777665 8889999998754 557776644 36 89999999999754
No 160
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.99 E-value=4.7e-09 Score=97.44 Aligned_cols=132 Identities=15% Similarity=0.186 Sum_probs=77.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-CCCCccCcCCCCceE----E---ecCc---------ccccCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR----L---HLAK---------QFCQLPHL 68 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-~~gg~w~~~~~~~~~----~---~~~~---------~~~~~~~~ 68 (303)
..+||+|||||+||++||..+++.|.+|+++|++. .+|+.-.....-... . .... ...++...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999983 555321110000000 0 0000 00001000
Q ss_pred CC---CCCC--CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEE
Q 022090 69 PF---PSSY--PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (303)
Q Consensus 69 ~~---~~~~--~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vI 142 (303)
.. |..+ ....++..+...+.+.+... ++. .++.+|+++..++ +....|.+.++ .. +.|+.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence 00 1000 11345566777777777655 444 3567788876654 22333555543 57 8999999
Q ss_pred EccCCCC
Q 022090 143 VASGETT 149 (303)
Q Consensus 143 lAtG~~~ 149 (303)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999644
No 161
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=1e-08 Score=91.94 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=33.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~ 42 (303)
++||+|||||+.|+++|..|++.|.+|+|+|++...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 479999999999999999999999999999998643
No 162
>PLN02661 Putative thiazole synthesis
Probab=98.97 E-value=5.8e-09 Score=90.58 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=76.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCC-ccCcCC-CCceEEecC-cccccCCCCCCCC--CCCCCCCH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPS--SYPMFVSR 80 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~ 80 (303)
.+||+|||||++|+++|..|++. |++|+++|++...|| .|.... +....+..+ ..+..--..++.. .+....+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 57999999999999999999986 899999999887665 664321 111111110 0000000111111 11111123
Q ss_pred HHHHHHHHHHHH-HcCCCceeEeCeEEEEEEEeCCCCeEEEEE------eecCCCC-ceeEEEEeeCEEEEccCCC
Q 022090 81 AQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKA------SNLLSPG-REIEEYYSGRFLVVASGET 148 (303)
Q Consensus 81 ~~l~~~l~~~~~-~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~------~~~~~~~-~~~~~~~~ad~vIlAtG~~ 148 (303)
.++...+.+.+. +.++.. +.++.++++..++ +...-|.+ .++.+.. .+... +.++.||+|||+.
T Consensus 172 ~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh~ 243 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCCC
Confidence 444455555443 345544 8888888887654 22222221 2211100 01246 8999999999953
No 163
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.97 E-value=1e-09 Score=72.74 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=41.2
Q ss_pred EECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCc
Q 022090 12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60 (303)
Q Consensus 12 IIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~ 60 (303)
|||||++||++|..|++.|++|+|+|+++.+||.+....++....+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~ 49 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGA 49 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeecc
Confidence 8999999999999999999999999999999999887655665554443
No 164
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.97 E-value=1.3e-08 Score=92.63 Aligned_cols=136 Identities=17% Similarity=0.218 Sum_probs=79.1
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC-------C--C-------CceE-------------Ee--
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-------S--Y-------DRLR-------------LH-- 57 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~-------~--~-------~~~~-------------~~-- 57 (303)
||+|||+|.+|++||..|+++|.+|+|+||.+..||.-... . . ++.. .+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999999877632110 0 0 0000 00
Q ss_pred --------cC---ccc----ccCCC-----C---CCCC---C------CC-----CCCCHHHHHHHHHHHHHHcCCCcee
Q 022090 58 --------LA---KQF----CQLPH-----L---PFPS---S------YP-----MFVSRAQFIEHLDHYVSHFNIGPSI 100 (303)
Q Consensus 58 --------~~---~~~----~~~~~-----~---~~~~---~------~~-----~~~~~~~l~~~l~~~~~~~~l~~~i 100 (303)
.+ ..+ ..|.. + +... . .. .......+...+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i-- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI-- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence 00 000 00000 0 0000 0 00 11246778888999999988555
Q ss_pred EeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 101 RYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 101 ~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++++.++++..++ +...-+...+..++ +... +.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence 9999999999875 23333444422222 4457 899999999997654
No 165
>PLN02985 squalene monooxygenase
Probab=98.93 E-value=4.1e-08 Score=91.18 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=77.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC----C---------------ccCc------CCCCceEEecCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK 60 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g----g---------------~w~~------~~~~~~~~~~~~ 60 (303)
..+||+|||||++|+++|..|++.|.+|+|+|+..... | .|.. .....+......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 35799999999999999999999999999999975211 1 1110 011111111111
Q ss_pred c--cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEE
Q 022090 61 Q--FCQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (303)
Q Consensus 61 ~--~~~~~~~~--~~~~~-~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (303)
. ...++... .+... ....++..+.+.+.+.+... ++.. .. .+++++..++ +....|+....++ +..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~-gtvv~li~~~-~~v~gV~~~~~dG---~~~~ 194 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EE-GTVKSLIEEK-GVIKGVTYKNSAG---EETT 194 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Ee-eeEEEEEEcC-CEEEEEEEEcCCC---CEEE
Confidence 1 01111100 00000 11345678888888887765 3332 43 4566665443 2222344432211 2246
Q ss_pred EEeeCEEEEccCCCCC
Q 022090 135 YYSGRFLVVASGETTN 150 (303)
Q Consensus 135 ~~~ad~vIlAtG~~~~ 150 (303)
+.+|.||.|+|.+|.
T Consensus 195 -~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 -ALAPLTVVCDGCYSN 209 (514)
T ss_pred -EECCEEEECCCCchH
Confidence 789999999998774
No 166
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.92 E-value=1.9e-08 Score=92.55 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHH----cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 79 SRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~----~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+...+...+.+.+++ .|....++++++|++++... ++.|.|.+.+ .+ +.+++||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence 456677777777777 66545569999999998764 3568887765 36 899999999997653
No 167
>PRK07121 hypothetical protein; Validated
Probab=98.92 E-value=6.2e-08 Score=89.92 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.+|+++|.+++++|.+|+|+||....||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999887665
No 168
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.92 E-value=2.2e-08 Score=90.35 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
+...+.+.+.+.+++.|... +++++|.+++..+ +.|.|.+.+ .+ +.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence 45677778888888777655 8899999987755 457676654 36 89999999999754
No 169
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.91 E-value=3.2e-08 Score=92.79 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=34.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
..+||+|||||+.|+++|+.|+++|.+|+|+|+++...
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~ 42 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT 42 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 35899999999999999999999999999999976443
No 170
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.91 E-value=4.7e-08 Score=89.74 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g 43 (303)
...+||+|||||++|+++|..|++. +.+|+|+||.+.+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 3567999999999999999999998 89999999944443
No 171
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=7.6e-08 Score=87.31 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
...+...+.+.+++.|... +++++|++++.++ +.|++.+.++... +..+ +++|.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~--~~~~-i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAEH--PSRT-LEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCCC--ccce-EecCEEEECCCcCh
Confidence 3466666777777778665 8889999998755 5577665543210 0136 89999999999755
No 172
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.89 E-value=5.4e-08 Score=91.89 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=78.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC---CCCccC-------c--------C-----------CCCceEE
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC---YASIWK-------K--------Y-----------SYDRLRL 56 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~---~gg~w~-------~--------~-----------~~~~~~~ 56 (303)
++.+|+|||||++|+++|..|++.|++|+|||+.+. ..|.+. . . .......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 457999999999999999999999999999999751 111110 0 0 0000000
Q ss_pred e---c---CcccccCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC
Q 022090 57 H---L---AKQFCQLPHLPFPS--SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL 126 (303)
Q Consensus 57 ~---~---~~~~~~~~~~~~~~--~~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~ 126 (303)
. . ......+....... ..+ ...++.++.+.|.+. .+.. .++++++|++++..+ +.++|.+.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 0 00001111110000 011 124577777777443 2322 247888999998765 5677877664
Q ss_pred CCCceeEEEEeeCEEEEccCCCCC
Q 022090 127 SPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 127 ~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+ +.+|.||.|.|.+|.
T Consensus 233 ------~t-i~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 ------QR-YEGDLLVGADGIWSK 249 (668)
T ss_pred ------CE-EEcCEEEECCCCCcH
Confidence 56 899999999998773
No 173
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.89 E-value=1e-07 Score=88.10 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=75.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||||++|+.+|..|++.|.+|+++++.+.+. +. + ..++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il----------------------~~---------~--~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL----------------------PT---------E--DAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC----------------------Cc---------C--CHHHHHH
Confidence 4689999999999999999999999999999886431 00 0 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.+++. +++++|++++....++...+...++ +..+ +.+|.||+|+| ..|+..
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence 777777778766 8999999997522123233333333 2257 89999999999 666543
No 174
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.89 E-value=8.6e-08 Score=88.45 Aligned_cols=137 Identities=15% Similarity=0.226 Sum_probs=79.9
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC--CCCccCc--C---CCC---ceE-E-ecCcccc-------c--
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKK--Y---SYD---RLR-L-HLAKQFC-------Q-- 64 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~--~gg~w~~--~---~~~---~~~-~-~~~~~~~-------~-- 64 (303)
..+||+|||+|++|+++|..|+++|.+|+|+||.+. .||.-.. . ... ... . .....+. .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999999873 4542110 0 000 000 0 0000000 0
Q ss_pred -------------------C--CCCCCCCC----C--C--C---CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEe
Q 022090 65 -------------------L--PHLPFPSS----Y--P--M---FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYD 112 (303)
Q Consensus 65 -------------------~--~~~~~~~~----~--~--~---~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~ 112 (303)
+ ...++... . . . ......+...+.+.+++.+++. +++++|+++..+
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~~ 160 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALELD 160 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEec
Confidence 0 00000000 0 0 0 0013567778888888888665 999999999875
Q ss_pred CCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 113 EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 113 ~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
+ +....|...+... +... +.++.||+|||.+.
T Consensus 161 ~-g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~ 192 (466)
T PRK08274 161 D-GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE 192 (466)
T ss_pred C-CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence 3 2333344432111 2256 89999999999654
No 175
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.88 E-value=2.3e-08 Score=89.24 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=71.7
Q ss_pred cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC--ccCcCCCCce--E---------EecCcccccCCCCCCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDRL--R---------LHLAKQFCQLPHLPFPSS 73 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg--~w~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~ 73 (303)
||+|||||+||+++|..|++. |++|+++|+.+..++ +|..-...-- . ..-+.....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999987776 4432100000 0 000000000000000000
Q ss_pred C-CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 74 Y-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 74 ~-~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
. .....+.++.+++.+.+ +.. ++++++|++++ . +.+ ++.++ .+ ++++.||.|+|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~--~~v--~l~dg-------~~-~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A--DGV--DLAPG-------TR-INARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C--CEE--EECCC-------CE-EEeeEEEECCCCCC
Confidence 0 11234667777765433 222 47788998883 2 233 34443 57 89999999999654
No 176
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.88 E-value=3.2e-09 Score=86.58 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=94.3
Q ss_pred cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|||||+||.+||..|+.+ ..+++++..++.+-..-+ -..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn--------------------------------~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN--------------------------------YQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh--------------------------------HHHHHHH
Confidence 368999999999999999987 458888877654321111 1123333
Q ss_pred HHHHH------HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCCCcc
Q 022090 87 LDHYV------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (303)
Q Consensus 87 l~~~~------~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~g~~ 160 (303)
+.++- ..++- .|..-+.++..- +.....+.+.++ .. +.|++|++||| .+|..- .+|.+
T Consensus 49 lekfdv~eq~~~elg~----~f~~~~~~v~~~-~s~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq-~E~~n 112 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGP----DFRRFLNDVVTW-DSSEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQ-VEGIN 112 (334)
T ss_pred HHhcCccccchhhhcc----cHHHHHHhhhhh-ccccceEEecCC-------ce-eeEEEEEEecC--CCccee-ecCCC
Confidence 32210 00111 111111111111 113355666665 56 89999999999 666432 22222
Q ss_pred ccccCCCCCccEEecccCCCC-----CCCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhH
Q 022090 161 SFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (303)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~ 228 (303)
. .++...+..+. ...+.|+|+|+|.|-+++|++.++... +|+|....+ +|-..+.+
T Consensus 113 ~---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~-~IsaTFfd 173 (334)
T KOG2755|consen 113 P---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDE-GISATFFD 173 (334)
T ss_pred c---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecch-hhhhcccC
Confidence 1 23433333332 233579999999999999999999754 899988777 66554433
No 177
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.88 E-value=1.1e-07 Score=87.68 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=77.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|++|+.+|..|.+.|.+|+++|+.+.+. +. ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL----------------------PG-----------EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC----------------------CC-----------CCHHHHHH
Confidence 4689999999999999999999999999999987431 00 01256667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.+++. +++++|++++.++ +...+...++ +..+ +.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGG-----ETET-LTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCC-----cEEE-EEeCEEEEecC--CcccCC
Confidence 777777777665 9999999998754 4455555433 2246 89999999999 656544
No 178
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.88 E-value=1.2e-08 Score=89.89 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=73.4
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEE-ecCCCCCCccCcCCCCceEEecC-------------------cccccCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLA-------------------KQFCQLPHL 68 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~ii-e~~~~~gg~w~~~~~~~~~~~~~-------------------~~~~~~~~~ 68 (303)
||+|||||+||+.||..+++.|.+|+++ .+.+.++..- |.+++.-... ....++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~---Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS---CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S---SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc---chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 7999999999999999999999999999 4444444321 1122111000 000000000
Q ss_pred ---CCCCCCC--CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 69 ---PFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 69 ---~~~~~~~--~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
.-|..+. ...++..+..++++.++....-. ..+.+|+++..++ ...+-|.+.++ .. +.++.||+
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vVl 146 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT--IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVVL 146 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEEE
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE--EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEEE
Confidence 0011111 24578899999999888743222 4578899998766 34455666654 67 89999999
Q ss_pred ccCC
Q 022090 144 ASGE 147 (303)
Q Consensus 144 AtG~ 147 (303)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9995
No 179
>PRK08275 putative oxidoreductase; Provisional
Probab=98.86 E-value=1.2e-07 Score=89.25 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=81.8
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCC-CCccCcC--CCCc-eE--EecCcccc---------
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQFC--------- 63 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~-gg~w~~~--~~~~-~~--~~~~~~~~--------- 63 (303)
|......+||+|||+|.||++||..+++. |.+|+|+||.+.. +|.+... .... +. ...+..+.
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 43334458999999999999999999987 6899999998753 2221100 0000 00 00000000
Q ss_pred -------------------cC--CCCCCCC---C---------CC----CCCCHHHHHHHHHHHHHHcCCCceeEeCeEE
Q 022090 64 -------------------QL--PHLPFPS---S---------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV 106 (303)
Q Consensus 64 -------------------~~--~~~~~~~---~---------~~----~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V 106 (303)
.+ -..++.. . .. .......+...|.+.+++.++++ ++++.+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v 160 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA 160 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence 00 0000000 0 00 01135577888888888777665 999999
Q ss_pred EEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+++..++++...-+...+..++ +... +.++.||+|||..+.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 161 TRLLTDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR 201 (554)
T ss_pred EEEEEcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence 9997753222222332221111 3346 889999999997553
No 180
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.85 E-value=2.8e-08 Score=91.44 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+...+...+.+.+++.|+.+ +.++.|++++.. +.+.|.+.+ .+ +.+|.||+|+|.++.
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~---~~~~v~t~~--------g~-v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEEG---QPAVVRTPD--------GQ-VTADKVVLALNAWMA 238 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEeeC---CceEEEeCC--------cE-EECCEEEEccccccc
Confidence 45667777777777788665 889999998742 346676654 36 899999999997654
No 181
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=91.35 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
+..++...+.+.+.+.|... +++++|+.+++..+ +.+.+.+.+++ .+ ++|+.||.|.|..+.
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~------~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGE------ET-LEAKFVINAAGLYAD 212 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCc------EE-EEeeEEEECCchhHH
Confidence 34566777777777777666 99999999999872 25666666542 45 799999999997664
No 182
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=1.3e-07 Score=89.40 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=37.7
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
|+-....+||+|||+|.|||+||..+++.|.+|+|+||....+|
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 55445568999999999999999999999999999999865443
No 183
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.84 E-value=3.8e-08 Score=94.51 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+...+...+.+.+.. ++.. +++++|+++...+ +.|.|.+.++ .. +.+|.||+|+|..+.
T Consensus 405 v~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 405 LCPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG-------TL-ASAPVVVLANGHDAA 464 (662)
T ss_pred eCHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC-------cE-EECCEEEECCCCCcc
Confidence 3445677777776666 6554 8899999998765 5688776543 45 689999999997553
No 184
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.84 E-value=9.1e-08 Score=86.72 Aligned_cols=36 Identities=39% Similarity=0.523 Sum_probs=32.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC 41 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~~ 41 (303)
..+||+|||||++|+++|++|++. |. +|+|+|+...
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 467999999999999999999995 85 9999999763
No 185
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.83 E-value=5e-08 Score=82.58 Aligned_cols=144 Identities=20% Similarity=0.290 Sum_probs=94.2
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC--CC---------------------------ccCcCC-
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--AS---------------------------IWKKYS- 50 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~--gg---------------------------~w~~~~- 50 (303)
|+++....+|+|||||.-|+++|.+|+++|.++.++|+-+.. -| .|+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 445556679999999999999999999999999999986521 11 122110
Q ss_pred -------CCceEEe--c------------------------Cc-ccccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 022090 51 -------YDRLRLH--L------------------------AK-QFCQLP-HLPFPSSYP-------MFVSRAQFIEHLD 88 (303)
Q Consensus 51 -------~~~~~~~--~------------------------~~-~~~~~~-~~~~~~~~~-------~~~~~~~l~~~l~ 88 (303)
.....+. . +. ---.|| ..++|+++. .+....+-+..++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 0000000 0 00 001234 445555543 3445678888889
Q ss_pred HHHHHcCCCceeEeCeEEEEEEEeCCC-CeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 89 HYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 89 ~~~~~~~l~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
..+++.|..+ +.+..|..+...+.. ....|.+.++ .. +.++.+|+++|++-....|
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcC
Confidence 9999988766 899999988865433 3455666654 56 8999999999975544444
No 186
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.83 E-value=4.7e-08 Score=87.28 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
+||+|||||++|+++|..|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999764
No 187
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.82 E-value=9.6e-08 Score=88.75 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=78.2
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCccCcCC---------CCceEEecC-------cccccCCCCC-
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKKYS---------YDRLRLHLA-------KQFCQLPHLP- 69 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~~~---------~~~~~~~~~-------~~~~~~~~~~- 69 (303)
+||+|||||++|+.+|..+++.|.+|+++|++.. +|.+..... ...+..... ....++....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 6999999999999999999999999999998743 222111000 001000000 0000011110
Q ss_pred --CCCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEcc
Q 022090 70 --FPSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVAS 145 (303)
Q Consensus 70 --~~~~~--~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAt 145 (303)
-|..+ ....++..+..++++.++..+... .++..|+.+..++++..+.|.+.++ .. +.|+.||+||
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILAT 150 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIITT 150 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEcc
Confidence 01111 124467788888888888773222 4556777776543234556666554 46 8999999999
Q ss_pred CCCC
Q 022090 146 GETT 149 (303)
Q Consensus 146 G~~~ 149 (303)
|.+.
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9654
No 188
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.82 E-value=8.7e-08 Score=91.06 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999875444
No 189
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.82 E-value=8e-08 Score=88.56 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
+...+...+.+.+++.|... +++++|++++.++ ++.|.+.+.+..++ +..+ +.+++||+|+|.++
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcch
Confidence 45677777777777777655 9999999998754 24587765432221 1246 89999999999755
No 190
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=9e-08 Score=89.82 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC-CCCccCc--CCC-------Cce-------------EEe
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK--YSY-------DRL-------------RLH 57 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~-~gg~w~~--~~~-------~~~-------------~~~ 57 (303)
|+.....+||+|||+|.||++||..+ +.|.+|+|+||... .||+-.. ..+ +.. ..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 55555568999999999999999999 89999999999764 4442111 000 000 000
Q ss_pred ----------cC---cccccCCCCCCCC-----------C---CCC-----CCCHHHHHHHHHHHHHHcCCCceeEeCeE
Q 022090 58 ----------LA---KQFCQLPHLPFPS-----------S---YPM-----FVSRAQFIEHLDHYVSHFNIGPSIRYQRS 105 (303)
Q Consensus 58 ----------~~---~~~~~~~~~~~~~-----------~---~~~-----~~~~~~l~~~l~~~~~~~~l~~~i~~~~~ 105 (303)
.+ .++.. -..++.. . ++. -.....+...|.+.+++.+++. ++++.
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~ 156 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEK-FGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVM 156 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeE
Confidence 00 00000 0011110 0 000 0134677788888777777655 99999
Q ss_pred EEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 106 VESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 106 V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++++..++.....-+...+...+ +... +.++.||+|||.+..
T Consensus 157 v~~Li~~~~~~v~Gv~~~~~~~g--~~~~-i~AkaVIlATGG~~~ 198 (543)
T PRK06263 157 AIKLIVDENREVIGAIFLDLRNG--EIFP-IYAKATILATGGAGQ 198 (543)
T ss_pred eeeeEEeCCcEEEEEEEEECCCC--cEEE-EEcCcEEECCCCCCC
Confidence 99987754211222333221111 2256 899999999997653
No 191
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.82 E-value=1e-07 Score=86.45 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
.+.+++|||||+.|+..|..+++.|.+|+|+|+.+.+- +.+ .+++.+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL----------------------p~~-----------D~ei~~ 218 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL----------------------PGE-----------DPEISK 218 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------CcC-----------CHHHHH
Confidence 46789999999999999999999999999999988641 111 137888
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~ 155 (303)
.+.+..++.++.. ++++.++.++..+ +...+.+.++.. .+ +++|.|++|+| ..|+...
T Consensus 219 ~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~ 276 (454)
T COG1249 219 ELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDG 276 (454)
T ss_pred HHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCC
Confidence 8888888766555 8999999998766 336666666532 26 88999999999 6666554
No 192
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.82 E-value=1.3e-07 Score=86.34 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=86.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC------------------------------------
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY------------------------------------ 49 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~------------------------------------ 49 (303)
..+||+|||||+.|+.+|..++.+|++|+++|+++...|+-...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 56899999999999999999999999999999999766643221
Q ss_pred --CCCceEEecC----ccc--------ccCCCC----C-------------CCC----C------CC-CCCCHHHHHHHH
Q 022090 50 --SYDRLRLHLA----KQF--------CQLPHL----P-------------FPS----S------YP-MFVSRAQFIEHL 87 (303)
Q Consensus 50 --~~~~~~~~~~----~~~--------~~~~~~----~-------------~~~----~------~~-~~~~~~~l~~~l 87 (303)
..+.+....+ ..+ +.+... | .|. . ++ ...+...+....
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~ 170 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAAN 170 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHH
Confidence 0000000000 000 000000 0 000 0 00 011223444444
Q ss_pred HHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 88 ~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
...+...|-.. ...++|+++..+. +.|-|...+..++ +..+ ++++.||.|||.++
T Consensus 171 a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~tg--~~~~-ira~~VVNAaGpW~ 225 (532)
T COG0578 171 ARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRETG--ETYE-IRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCCC--cEEE-EEcCEEEECCCccH
Confidence 55566667665 7889999999887 4888998886655 5567 89999999999744
No 193
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.81 E-value=1.1e-07 Score=85.22 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ... ...+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~-~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SLM-PPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hhC-CHHHHHH
Confidence 46899999999999999999999999999998764310 000 1245566
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
+.+.+++.++.. +++++|+++..++ +.+.+.+.++ .+ +.+|.||+|+|.
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~ 237 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCC
Confidence 777777778665 8899999997654 4577777654 57 899999999993
No 194
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.6e-07 Score=87.38 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=34.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
..+||+|||+|.|||+||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 35799999999999999999999999999999975433
No 195
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.5e-07 Score=87.64 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 357999999999999999999999999999999864443
No 196
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.80 E-value=3.9e-07 Score=84.00 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~~-----------d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL----------------------PRE-----------EPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC----------------------Ccc-----------CHHHHHH
Confidence 4689999999999999999999999999999876431 000 1255667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+..+++. +++++|++++.++ +.+.+.+...++ ..+ +.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~----~~~-i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGG----QGE-VEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCC----ceE-EEeCEEEEeEC--CCcCCC
Confidence 777777777665 8999999997654 345555543211 157 89999999999 666554
No 197
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.79 E-value=2.9e-07 Score=87.43 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
No 198
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=3.2e-07 Score=84.44 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll----------------------~~-----------~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL----------------------PG-----------EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------cc-----------ccHHHHHH
Confidence 4689999999999999999999999999999876431 00 01356677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.+++. +++++|++++.++ ..+.+.. ++ +..+ +.+|.||+|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence 777777778666 8999999997654 3333332 21 2247 89999999999 666543
No 199
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.78 E-value=2.8e-07 Score=87.63 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 357999999999999999999999999999999875554
No 200
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=3.6e-07 Score=84.24 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL----------------------PG-----------EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC----------------------Cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999976531 00 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.++.. +++++|++++.++ +.+.+...+++ +..+ +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence 777777778665 9999999998765 35666655431 2257 89999999999 556543
No 201
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.77 E-value=1.8e-07 Score=87.72 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc--CCC-------Cce-------------EEe------
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--YSY-------DRL-------------RLH------ 57 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~--~~~-------~~~-------------~~~------ 57 (303)
..+||+|||+|.||++||..+++.|.+|+|+||....+|.-.. ..+ ++. ..+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3589999999999999999999999999999998866542110 000 000 000
Q ss_pred ----cC---cccccCCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEE
Q 022090 58 ----LA---KQFCQLPHLPFPSS--------------YP------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (303)
Q Consensus 58 ----~~---~~~~~~~~~~~~~~--------------~~------~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~ 110 (303)
.+ .++.. -..++... .+ .-.....+...|.+.+++.++.. +.++.|+++.
T Consensus 95 ~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li 171 (541)
T PRK07804 95 LVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLL 171 (541)
T ss_pred HHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeE
Confidence 00 00000 00111100 00 01135678888888888877554 8899999997
Q ss_pred EeCCCCeEEEEEee---cCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 111 YDEATNMWNVKASN---LLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 111 ~~~~~~~~~v~~~~---~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.++++...-+...+ +..+ .... +.++.||+|||.++.
T Consensus 172 ~~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 172 TDGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ 211 (541)
T ss_pred EcCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence 65422222333321 0111 1246 899999999997664
No 202
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=3.1e-07 Score=86.88 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
+.||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 46999999999999999999999999999999876543
No 203
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.77 E-value=4.1e-08 Score=87.10 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 81 AQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 81 ~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
..+.+.+.+++... +.. ++++++|++|++.. ++.|.|.+.+..++ +..+ +.+++|++..|..+.
T Consensus 181 G~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHhCCCcE--EEecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhH
Confidence 34445555555444 544 49999999999876 56799998765443 4467 899999999997653
No 204
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=3.7e-07 Score=87.05 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
.+||+|||+|.|||+||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999865543
No 205
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=3e-07 Score=86.57 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++.|.+|+|+||....++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999865444
No 206
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.74 E-value=2e-07 Score=85.37 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. + ..++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~---------~--~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL----------------------PR---------E--EPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC----------------------CC---------C--CHHHHHH
Confidence 4689999999999999999999999999999976531 00 0 1255666
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+..++.. +++++|++++.++ +...+.. ++ .+ +.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~-~g-------~~-i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVT-ED-------ET-YRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEE-CC-------eE-EEcCEEEEeeC--CCCCcc
Confidence 777777778765 8899999997643 3444443 22 56 89999999999 655543
No 207
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.74 E-value=5.5e-07 Score=85.46 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~ 41 (303)
.+||+|||+|.||++||..+++. |.+|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 57999999999999999999998 999999999864
No 208
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.5e-07 Score=86.71 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~ 42 (303)
+||+|||+|.||++||..+++.|.+|+|+||....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999997643
No 209
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.73 E-value=6.9e-08 Score=83.88 Aligned_cols=142 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCCcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCCCCCccCcC-C---------CC---------------
Q 022090 4 QAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASIWKKY-S---------YD--------------- 52 (303)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~~gg~w~~~-~---------~~--------------- 52 (303)
....+||+|||||||||++|.+|.+. .++|+++|+...+||..-.. + .+
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTS 152 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccc
Confidence 34568999999999999999999764 56899999999998732110 0 11
Q ss_pred -ceEEecCcccccCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCC--
Q 022090 53 -RLRLHLAKQFCQLPHL-PFPSSYPMF-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS-- 127 (303)
Q Consensus 53 -~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~-- 127 (303)
.+...........|.. |+... ..| .+-.++..||-+.++.+|+++ .-+..+..+-.++++...-+.+.+-+-
T Consensus 153 d~~~fLt~~~~i~vPv~~pm~Nh-GNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVPSPMDNH-GNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred cceeeeccCceeecCCCcccccC-CcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccccC
Confidence 1111111111111111 11111 122 356899999999999999876 666666666666655544454443110
Q ss_pred -CC-c----eeEEEEeeCEEEEccCCCC
Q 022090 128 -PG-R----EIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 128 -~~-~----~~~~~~~ad~vIlAtG~~~ 149 (303)
+. + +-.+ +.++.-|.|-|.+.
T Consensus 230 ~G~pKd~FerGme-~hak~TifAEGc~G 256 (621)
T KOG2415|consen 230 DGAPKDTFERGME-FHAKVTIFAEGCHG 256 (621)
T ss_pred CCCccccccccce-ecceeEEEeccccc
Confidence 00 0 1135 78888899988643
No 210
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.72 E-value=2.8e-07 Score=87.10 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.6
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987544
No 211
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.72 E-value=2.8e-07 Score=85.45 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=78.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc--CcCCC-------Cce--------E----EecC------
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW--KKYSY-------DRL--------R----LHLA------ 59 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w--~~~~~-------~~~--------~----~~~~------ 59 (303)
.+||+|||+|.|||+||..+++.|. |+|+||.+..+|.- ....+ ++. . ...+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3699999999999999999999997 99999987554421 11000 000 0 0000
Q ss_pred --------cccccCCCCCCCC--------------CCC-----CCCCHHHHHHHHHHHHHH-cCCCceeEeCeEEEEEEE
Q 022090 60 --------KQFCQLPHLPFPS--------------SYP-----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASY 111 (303)
Q Consensus 60 --------~~~~~~~~~~~~~--------------~~~-----~~~~~~~l~~~l~~~~~~-~~l~~~i~~~~~V~~i~~ 111 (303)
..+.. -..++.. .++ .......+...|.+.+++ .++.+ ++++.++++..
T Consensus 81 ~~~~~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~ 157 (488)
T TIGR00551 81 VSDARSAVQWLVD-QGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLI 157 (488)
T ss_pred HHhHHHHHHHHHH-cCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeec
Confidence 00000 0001100 000 011346788888887776 46555 89999999876
Q ss_pred eCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 112 ~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
++ +...-+...+.. +... +.++.||+|||.++.
T Consensus 158 ~~-g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 158 ET-GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK 190 (488)
T ss_pred cC-CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence 53 222224444321 2246 899999999997664
No 212
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.71 E-value=2.3e-07 Score=85.62 Aligned_cols=64 Identities=14% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcC-CCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 81 AQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 81 ~~l~~~l~~~~~~~~-l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
..+.+.+.+.+++.+ ++. +++++|++++..+ ++.|.+.+.+..++ +..+ +.+++||+|+|.++.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~G--~~~~-i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKTG--EKRT-VRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCCC--ceEE-EEcCEEEECCCcchH
Confidence 456666666676665 444 9999999998754 34588876542221 1136 899999999998653
No 213
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=1e-06 Score=81.49 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------------------A--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------------------c--CCHHHHHH
Confidence 46999999999999999999999999999998764310 0 01256666
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.++.. +++++|++++.++ +...+...++.+ +... +.+|.|++|+| ..|+..
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence 677777777665 8999999998654 344555544211 2257 89999999999 666654
No 214
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.70 E-value=7.7e-07 Score=84.07 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.+|+++|..++++|.+|+|+||.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 468999999999999999999999999999999987776
No 215
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.70 E-value=8.1e-07 Score=81.96 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+. + .+ ..++.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~---------~~--d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL----------------------P---------NE--DAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------C---------cc--CHHHHHH
Confidence 4689999999999999999999999999999876421 0 00 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.+++. +++++|++++.++ +...+.+...+ + +..+ +++|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~-g--~~~~-i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKD-G--KAQE-LEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecC-C--CeEE-EEeCEEEECcC--cccCCC
Confidence 777777778766 9999999997654 34555554111 1 2247 89999999999 555543
No 216
>PRK06370 mercuric reductase; Validated
Probab=98.70 E-value=4.3e-07 Score=83.73 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~----------------------~-----------~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP----------------------R-----------EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc----------------------c-----------cCHHHHHH
Confidence 46899999999999999999999999999998775310 0 01255667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.++..+++. +++++|.+++..+ +...+.....++ ..+ +.+|.||+|+| ..|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~----~~~-i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGG----APE-ITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCC----ceE-EEeCEEEECcC--CCcCCC
Confidence 777777778665 8999999998654 334454432111 157 89999999999 666543
No 217
>PRK12839 hypothetical protein; Provisional
Probab=98.69 E-value=1.6e-06 Score=81.68 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=38.9
Q ss_pred CCC-CCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 1 MKE-QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 1 M~~-~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
|++ .+..+||+|||+|.+|+++|..|++.|.+|+|+|+...+||.
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 542 234689999999999999999999999999999999877764
No 218
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.69 E-value=3.1e-07 Score=84.62 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------------------F-----------LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------------------c-----------CCHHHHHH
Confidence 47899999999999999999999999999998765310 0 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.+++.++.. ++++.|++++..+ +.+.+.+.++ .+ +++|.||+|+| ..|+.
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNT 274 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCccc
Confidence 777777777665 8899999998654 4466665443 46 89999999999 55554
No 219
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.69 E-value=2.1e-07 Score=84.06 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=74.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.+. .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987653210 001245667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
+.+..++.++.. ++++.|++++. + +.+.+.+.++ .+ +.+|.||+|+| ..|+
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIG--ISAN 242 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCC--CChh
Confidence 777777778665 88999999865 2 3455666554 56 89999999999 5554
No 220
>PLN02815 L-aspartate oxidase
Probab=98.69 E-value=4.8e-07 Score=85.33 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.|||+||..+++.| +|+|+||....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999886665
No 221
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=3e-07 Score=86.89 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.||++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 47999999999999999999987 489999999875453
No 222
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.68 E-value=5.1e-07 Score=82.34 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.||++||..+. .|.+|+|+||.+..|+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 579999999999999999985 7999999999887665
No 223
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=6.5e-07 Score=82.68 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=36.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCcc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIW 46 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w 46 (303)
..+++|||||++||++|..|.+. |.+|+|+|+.+.+||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 57999999999999999999985 68999999999999853
No 224
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.67 E-value=1.4e-06 Score=81.27 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=38.3
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
|.+....+||+|||+| +|+++|.++++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 6666667899999999 999999999999999999999886554
No 225
>PRK06116 glutathione reductase; Validated
Probab=98.67 E-value=4.2e-07 Score=83.49 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=77.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~~-----------~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------------RGF-----------DPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------------ccc-----------CHHHHHH
Confidence 4689999999999999999999999999999876421 000 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.+++. +++++|.+++.++ ++.+.+.+.++ .+ +.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence 777777778665 8999999998754 23356666543 56 89999999999 555544
No 226
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=6.7e-07 Score=85.18 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
.+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999987554
No 227
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.66 E-value=5e-07 Score=85.41 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=36.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|++|+++|..++++|.+|+|+||....||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 468999999999999999999999999999999987775
No 228
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.65 E-value=5.1e-08 Score=89.18 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
.++..+.++|.+.+...|++. +.+ .|+.+..++++....|.+.++ .+ +++|.+|-|||..+
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~~s 211 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGRRS 211 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGGG-
T ss_pred EeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCccc
Confidence 468999999999999999874 444 688888777333345666554 67 99999999999533
No 229
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.65 E-value=6e-07 Score=77.40 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=111.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+++++|||||..||..+.-..+.|.+|+++|-.+.+|+... .++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHHH
Confidence 57899999999999999999999999999999888775421 167777
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCC--C--Ccc-c
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI--R--GLC-S 161 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~--~--g~~-~ 161 (303)
++..+...++.+ ++++.|+.++.+.+ +...+.+.+..++ +.++ +++|.+++|+| .+|..-.+ . |++ .
T Consensus 258 ~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GLgle~iGi~~D 329 (506)
T KOG1335|consen 258 FQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGLGLEKIGIELD 329 (506)
T ss_pred HHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCCChhhcccccc
Confidence 788888888887 99999999998873 3677777765554 5577 99999999999 66654432 1 111 1
Q ss_pred cccCCCCCccEEecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhccC
Q 022090 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (303)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 210 (303)
+ .++++...++.. +-.++-.||--.-|--+|....+.|.
T Consensus 330 ~------r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 330 K------RGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred c------ccceeccccccc----cCCceEEecccCCcchhhhhhhhhch
Confidence 2 344433332222 22478889987777777776666554
No 230
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.64 E-value=2.9e-08 Score=68.21 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=38.2
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecCeeeeehhhHHHHHH
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp~~~~~~~~~ 233 (303)
+++|||+|.+|+|+|..|+++|.+||+++|++ +++|..+...+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~ 45 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKI 45 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHH
Confidence 68999999999999999999999999999999 6666655544433
No 231
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.63 E-value=2.3e-07 Score=83.39 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
.++||+|||||++|+++|+.|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999987544
No 232
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.63 E-value=8.5e-07 Score=81.76 Aligned_cols=105 Identities=15% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. +. + ..++.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il----------------------~~---------~--d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC----------------------PG---------T--DTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC----------------------CC---------C--CHHHHHH
Confidence 5789999999999999999999999999999876431 00 0 1245666
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..++.+++. ++++.|++++.++ +...+.+....++ +... +.+|.|++|+| ..|+.
T Consensus 221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence 777777777665 9999999997654 3455544321111 2257 89999999999 55554
No 233
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.63 E-value=2e-06 Score=80.99 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=39.3
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
|..+...+||+|||+|++|+++|..++++|.+|+|+||....||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 55556678999999999999999999999999999999887665
No 234
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.63 E-value=1.2e-06 Score=88.87 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+||+|||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999999999999999999887764
No 235
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.62 E-value=6.4e-07 Score=82.17 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=75.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL----------------------RG-----------FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC----------------------cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01256667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.+++.++.. ++++.|.+++..+ +...+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence 777777778665 8999999997654 3355665443 56 89999999999 55554
No 236
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=7.1e-07 Score=84.40 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=34.9
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCC---CCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g---~~v~iie~~~~~gg 44 (303)
..+||+|||+|.|||+||..+++.| .+|+|+||....++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 3579999999999999999999998 89999999876554
No 237
>PTZ00367 squalene epoxidase; Provisional
Probab=98.61 E-value=7.5e-07 Score=83.45 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..+||+|||||++|+++|..|++.|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999999999975
No 238
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.61 E-value=2.9e-06 Score=80.28 Aligned_cols=40 Identities=18% Similarity=0.545 Sum_probs=36.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+||+|||+|.+|+++|..++++|.+|+|+|+.+..||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 4689999999999999999999999999999998877763
No 239
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.60 E-value=8.8e-07 Score=80.51 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=31.3
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
||+|||||++|+++|.+|++.|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 899999999999999999999999999999753
No 240
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.5e-06 Score=82.20 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++. .+|+|+||....++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 357999999999999999999986 99999999865444
No 241
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.60 E-value=1.1e-07 Score=82.86 Aligned_cols=36 Identities=39% Similarity=0.511 Sum_probs=32.9
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
.+|+|||||++|+++|..|.++|++|+|+|+...+-
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 589999999999999999999999999999876443
No 242
>PRK07846 mycothione reductase; Reviewed
Probab=98.60 E-value=1.7e-06 Score=79.49 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=71.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~~-----------d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL----------------------RHL-----------DDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------ccc-----------CHHHHHH
Confidence 4689999999999999999999999999999876431 000 1244455
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.. ..++ .+++++++++++.++ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 213 l~~l~-~~~v--~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRW--DVRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCe--EEEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence 54433 2354 448899999997654 3455655443 56 89999999999 555544
No 243
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.59 E-value=6.7e-08 Score=89.35 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=39.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 48 (303)
.+||+|||||++||+||..|+++|++|+|+||++.+||..+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEE
Confidence 479999999999999999999999999999999999995544
No 244
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.59 E-value=9e-07 Score=83.63 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.|||+||..+++. |.+|+|+||....++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 357999999999999999999987 479999999876554
No 245
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.59 E-value=1.6e-06 Score=82.19 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.7
Q ss_pred EEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (303)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~ 42 (303)
|+|||+|.|||+||..+++.|.+|+|+||.+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998733
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.59 E-value=2e-07 Score=90.79 Aligned_cols=112 Identities=13% Similarity=0.266 Sum_probs=71.8
Q ss_pred cEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCC---C-Cc--cCcC--------------------CCCceEEecCc
Q 022090 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-SI--WKKY--------------------SYDRLRLHLAK 60 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~---g-g~--w~~~--------------------~~~~~~~~~~~ 60 (303)
+|+|||||++|+++|..|++. |++|+|+|+++.. | |. +... .+.........
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999998753 2 11 1100 00011100000
Q ss_pred ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeC
Q 022090 61 QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGR 139 (303)
Q Consensus 61 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad 139 (303)
... ...... ....+.++.+.|.+.+.+.+++. +++++|+++.. .. ..+|
T Consensus 82 ~~~------~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~---------------------~~-~~~D 131 (765)
T PRK08255 82 RRI------RSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA---------------------LA-ADAD 131 (765)
T ss_pred EEE------EECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh---------------------hh-cCCC
Confidence 000 000001 12568999999999998888655 88887765421 12 4689
Q ss_pred EEEEccCCCCC
Q 022090 140 FLVVASGETTN 150 (303)
Q Consensus 140 ~vIlAtG~~~~ 150 (303)
.||.|+|.+|.
T Consensus 132 ~VVgADG~~S~ 142 (765)
T PRK08255 132 LVIASDGLNSR 142 (765)
T ss_pred EEEEcCCCCHH
Confidence 99999997663
No 247
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.59 E-value=6.4e-07 Score=79.52 Aligned_cols=132 Identities=18% Similarity=0.326 Sum_probs=90.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhC-------------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~-------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (303)
.+|+|+|||+.|..+|..|.+. ..+|+++|+.+.+- +.++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p~~~----- 208 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------PMFP----- 208 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------cCCC-----
Confidence 3799999999999999999764 13889999987641 2222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+++.+|.++..++.|+++ ++++.|++++.+. |++.+++ ++ +.++.+|-|+|....|..-
T Consensus 209 ------~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 209 ------PKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK 267 (405)
T ss_pred ------HHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence 377889999999999877 9999999998766 6666542 36 8999999999976555544
Q ss_pred CCCCccccccCCCCCccEEecccCCCCCCCCCCeEEEECCC
Q 022090 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195 (303)
Q Consensus 155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ViG~G 195 (303)
.+-|.+.-. .|++.-....... ...+|.++|-.
T Consensus 268 ~l~~~e~dr-----~Grl~V~~~L~~~---~~~~IFa~GD~ 300 (405)
T COG1252 268 DLSGLETDR-----RGRLVVNPTLQVP---GHPDIFAAGDC 300 (405)
T ss_pred hcChhhhcc-----CCCEEeCCCcccC---CCCCeEEEecc
Confidence 432233110 3555544433321 12467777743
No 248
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.58 E-value=1.2e-06 Score=80.48 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=76.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il----------------------~~~-----------d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL----------------------RSF-----------DSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------ccc-----------CHHHHHH
Confidence 4689999999999999999999999999999876531 000 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+..++.. ++++.|++++.+. .+...+.+.++ + .. +.+|.||+|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-----~-~~-i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG-----K-SI-DDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC-----c-EE-EEcCEEEEeeC--CCcCcc
Confidence 777777778766 8999999997654 23345555442 1 46 89999999999 555543
No 249
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.58 E-value=1.7e-06 Score=81.16 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 457999999999999999999887 89999999886665
No 250
>PLN02507 glutathione reductase
Probab=98.58 E-value=1e-06 Score=81.87 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=76.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+- +. ...++.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL----------------------RG-----------FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC----------------------cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.+++. ++++.|++++..+ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence 777777778665 8999999997654 3455655443 56 89999999999 555543
No 251
>PRK07208 hypothetical protein; Provisional
Probab=98.58 E-value=1.8e-07 Score=86.66 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=40.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~ 49 (303)
.++||+|||||++||++|..|.++|++|+|+|+++.+||.+...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 45799999999999999999999999999999999999976543
No 252
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.58 E-value=2.6e-06 Score=78.48 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP----------------------L-----------EDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc----------------------c-----------hhHHHHHH
Confidence 46899999999999999999999999999998765320 0 01255666
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++. ++. ++++++.+++..+. ....+...++ +..+ +.+|.||+|+| ..|+..
T Consensus 216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~-----~~~~-i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGG-----KTET-IEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCC-----ceEE-EEeCEEEEccC--CccCCC
Confidence 66666655 554 88999999976542 2333333222 2257 89999999999 666654
No 253
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.57 E-value=2.7e-06 Score=80.35 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.||++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999876554
No 254
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=7.8e-08 Score=88.33 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=37.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
.+++|+|||||+|||+||+.|.+.|++|+|+|.++.+||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 467999999999999999999999999999999999998
No 255
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.57 E-value=1.1e-06 Score=80.96 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=76.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||+|..|+.+|..|++.|.+|+++++.+.+.. .+ ..++.+.
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~~--d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------GE--DADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------CC--CHHHHHH
Confidence 46899999999999999999999999999998764310 00 1245667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.++.. ++++++++++.++ +.+.+.+.++ .+ +++|.|++|+| ..|+..
T Consensus 224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence 777777778665 8899999997654 4455665543 56 89999999999 555543
No 256
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=4.9e-06 Score=78.25 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=36.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+||+|||+| +|+++|..+++.|.+|+|+||.+.+||.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 46899999999 8999999999999999999999888874
No 257
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.56 E-value=6.5e-07 Score=83.99 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=33.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+||+|||+|.||++||..+. .|.+|+|+||.+..||
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4689999999999999999996 5999999999886655
No 258
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=1.8e-06 Score=79.72 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=73.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.+ ..++.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il----------------------~~~-----------d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI----------------------PAA-----------DKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC----------------------CcC-----------CHHHHHH
Confidence 4689999999999999999999999999999887531 000 1245566
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+.. +. +++++.|+.++..+ +...+...++.+ +..+ +.+|.||+|+| ..|+..
T Consensus 221 ~~~~l~~~-v~--i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FN--IMLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eE--EEcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence 66655544 44 48899999997654 345565544211 1257 89999999999 566544
No 259
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.55 E-value=3.1e-06 Score=81.00 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=34.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
..+||+|||+|.|||+||..+++.|.+|+|+|+.+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 35799999999999999999999999999999876543
No 260
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.55 E-value=9.7e-07 Score=80.98 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-. . .+ ..++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------~---~~--~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP---------------------------D---SF--DKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc---------------------------h---hc--CHHHHHH
Confidence 46899999999999999999999999999988764210 0 00 1367778
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
+.+.+++.+++. +++++|++++.++ ..+.+...+ .+ +.+|.||+|+| ..|+
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~d~vi~a~G--~~p~ 247 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK--------GE-YEADVVIVATG--VKPN 247 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC--------CE-EEcCEEEECcC--CCcC
Confidence 888888888765 8999999996432 334444432 46 89999999999 5444
No 261
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.55 E-value=1.5e-06 Score=80.95 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
.+||+|||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999886555
No 262
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=1.4e-06 Score=79.89 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=74.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + .+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~---------~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL----------------------P---------RE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC----------------------C---------Cc--CHHHHHH
Confidence 4689999999999999999999999999999876421 0 00 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.+++.+++. +++++|.+++.++ +.+.+...+ .+ +.+|.|++|+| ..|+.
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence 777788888766 8899999998654 445554433 35 78999999999 55554
No 263
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.54 E-value=1.1e-06 Score=80.09 Aligned_cols=99 Identities=17% Similarity=0.304 Sum_probs=73.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +.+ ..++.++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~~--~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KLF--DEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------ccc--CHHHHHH
Confidence 46899999999999999999999999999998764310 000 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.+++.+++. ++++.|.+++.++ . . +...++ .+ +.+|.||+|+| ..|+.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~--~-~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE--R-V-KVFTSG-------GV-YQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC--C-E-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence 777778888766 8899999997543 2 2 344433 56 89999999999 55543
No 264
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.52 E-value=5.3e-06 Score=78.11 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+||+|||+|.+|+++|..|++.|.+|+|+|+....||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 4689999999999999999999999999999998776663
No 265
>PRK14727 putative mercuric reductase; Provisional
Probab=98.51 E-value=2.2e-06 Score=79.29 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-----------------------~-----------~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-----------------------R-----------EDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-----------------------c-----------chHHHHHH
Confidence 4689999999999999999999999999998743210 0 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.++.. +++++|++++.++ +.+.+...+ .+ +.+|.||+|+| ..|+..
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCcc
Confidence 777778778766 8899999997654 445555433 45 78999999999 555443
No 266
>PRK14694 putative mercuric reductase; Provisional
Probab=98.51 E-value=2.1e-06 Score=79.28 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||+|+.|+.+|..|++.|.+|+++++...+. . ...++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-----------------------~-----------~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-----------------------Q-----------EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-----------------------C-----------CCHHHHHH
Confidence 4689999999999999999999999999998643210 0 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..++.+++. ++++.|.+++.++ +.+.+...+ .+ +.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCcC
Confidence 777777778766 8899999997654 445554432 46 89999999999 555543
No 267
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.50 E-value=2.3e-06 Score=78.61 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. . ..++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~----------~-d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL----------------------RH----------L-DEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc----------------------cc----------c-CHHHHHH
Confidence 4689999999999999999999999999999876421 00 0 0244455
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+ .++. ++++++|++++.++ +...+.+.++ .+ +++|.|++|+| ..|+..
T Consensus 216 l~~~~~-~gI~--i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWD--IRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCE--EEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCCC
Confidence 554433 3544 48899999998654 3455665443 46 89999999999 555543
No 268
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.48 E-value=1.3e-06 Score=79.95 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=72.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+... ...++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999987643200 01256667
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..++.++.. ++++.|++++. ..+.+.++ .. +.+|.|++|+| ..|+.
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~------~~v~~~~g-------~~-~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING------NEVTFKSG-------KV-EHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC------CEEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence 777777778765 88999998852 13555443 46 89999999999 55543
No 269
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.47 E-value=8e-06 Score=77.29 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=36.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 46 (303)
.+||+|||+|.+|+++|..++++|.+|+|+|+....||+.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999988777754
No 270
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.47 E-value=2.8e-06 Score=78.55 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=74.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC---CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (303)
+.+++|||||+.|+.+|..+... |.+|+|+++.+.+. +.+ ..++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il----------------------~~~-----------d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL----------------------RGF-----------DSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc----------------------ccc-----------CHHH
Confidence 46899999999999999766544 99999999877531 000 1366
Q ss_pred HHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 84 ~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
.+.+.+..++.++.. ++++.+++++..+ ++...+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence 777778788778665 8999999997654 23345555443 46 89999999999 55554
No 271
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=5.1e-07 Score=81.35 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC----------CCCCccCcCCCCceEE-------ecCcccccCCCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN----------CYASIWKKYSYDRLRL-------HLAKQFCQLPHLP 69 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~----------~~gg~w~~~~~~~~~~-------~~~~~~~~~~~~~ 69 (303)
.+||+|||||+||+.||...++.|.++.++.-+. .+||.-..+....+-. .......+|.-+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4899999999999999999999999998887643 2333211110000000 0000111111110
Q ss_pred C---C--CCCCCCCCHHHHHHHHHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEE
Q 022090 70 F---P--SSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (303)
Q Consensus 70 ~---~--~~~~~~~~~~~l~~~l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIl 143 (303)
. | .......++..+..++++.++.. ++. .++..|+++..++....+-|.+..+ .. +.|+.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEE
Confidence 0 1 01112344556666677766654 332 5667787777655233466777665 57 89999999
Q ss_pred ccCCCC
Q 022090 144 ASGETT 149 (303)
Q Consensus 144 AtG~~~ 149 (303)
+||.+-
T Consensus 153 TTGTFL 158 (621)
T COG0445 153 TTGTFL 158 (621)
T ss_pred eecccc
Confidence 999644
No 272
>PTZ00058 glutathione reductase; Provisional
Probab=98.47 E-value=2.7e-06 Score=79.72 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=74.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. + ..++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il----------------------~~---------~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL----------------------RK---------F--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc----------------------cc---------C--CHHHHHH
Confidence 5789999999999999999999999999999876421 00 0 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..++.+++. +++..|.+++.++. +...+...++ + .+ +++|.|++|+| ..|+.
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~~-~~v~v~~~~~-----~-~~-i~aD~VlvA~G--r~Pn~ 338 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVKE-KNLTIYLSDG-----R-KY-EHFDYVIYCVG--RSPNT 338 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecCC-CcEEEEECCC-----C-EE-EECCEEEECcC--CCCCc
Confidence 777777778765 89999999976542 2344443332 1 57 89999999999 55553
No 273
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.46 E-value=6.6e-07 Score=80.31 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
.+|+|||||++|+.+|..|++.|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
No 274
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.46 E-value=1.8e-06 Score=84.64 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=76.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-. ... ..+..+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~~l-d~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------EQL-DQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------hhc-CHHHHHH
Confidence 45899999999999999999999999999998764210 000 1255677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.++..++.+ ++++.++++..+.......+.+.++ .+ +.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence 777888888766 9999999997643223445666554 56 89999999999 55553
No 275
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.46 E-value=3.9e-06 Score=77.63 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=74.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||||+.|+.+|..|++.|.+|+++++...+ +.+ ..++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~~-----------d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-----------------------RGF-----------DQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc-----------------------ccc-----------CHHHHHH
Confidence 458999999999999999999999999999864211 000 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..+..+++. ++++.++.+...+ +...+...++.. ..+ +.+|.||+|+| ..|+.
T Consensus 226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i~~D~vl~a~G--~~pn~ 281 (484)
T TIGR01438 226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN----GIE-EEYDTVLLAIG--RDACT 281 (484)
T ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc----ceE-EEeCEEEEEec--CCcCC
Confidence 777778778766 8898888887654 344555544321 147 89999999999 55554
No 276
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.46 E-value=4.3e-07 Score=80.47 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=37.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+++|||||++|+++|..|++.|++|.++|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 368999999999999999999999999999999999986
No 277
>PRK13748 putative mercuric reductase; Provisional
Probab=98.43 E-value=3.5e-06 Score=79.68 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+. . ...++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-----------------------~-----------~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-----------------------R-----------EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-----------------------c-----------cCHHHHHH
Confidence 4689999999999999999999999999998753210 0 01256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+..+..++.. ++++.|++++.++ +.+.+...+ .+ +.+|.||+|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence 777777778766 8899999997654 445555433 36 89999999999 666543
No 278
>PRK07233 hypothetical protein; Provisional
Probab=98.42 E-value=6.9e-07 Score=81.57 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=37.3
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 48 (303)
+|+|||||++||++|..|++.|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 6999999999999999999999999999999999997543
No 279
>PLN02576 protoporphyrinogen oxidase
Probab=98.40 E-value=7e-07 Score=83.09 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=38.1
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCCCCc
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASI 45 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~gg~ 45 (303)
+..+||+|||||++||++|..|.+. |.+|+|+|+++.+||.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 4567999999999999999999999 9999999999999984
No 280
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.40 E-value=5.7e-06 Score=76.91 Aligned_cols=100 Identities=17% Similarity=0.044 Sum_probs=73.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+++|||+|+.|+.+|..|++.|.+|+++++...+ +.+ ..++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~~-----------d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-----------------------RGF-----------DRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-----------------------ccC-----------CHHHHHH
Confidence 458999999999999999999999999999864211 000 1246677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.+++.+++. ++++.+.+++..+ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence 777777778665 8898888887654 3345655443 46 79999999999 555543
No 281
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.40 E-value=2.6e-06 Score=83.30 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=74.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+-. ... ...+...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~l-d~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQL-DQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hhc-CHHHHHH
Confidence 46899999999999999999999999999998764210 000 1245566
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..+..++.+ ++++.++++..+. ....|.+.++ .+ +.+|.||+|+| .+|+.
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence 777777788766 8898888886533 3345666654 57 89999999999 55554
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.39 E-value=3.8e-06 Score=75.99 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+++|||+|+.|+.+|..|+++|++|+++|+.+.+++... . ..+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------------------------------~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-------------------------------D-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-------------------------------h-HHHHHH
Confidence 36999999999999999999999999999999987653310 0 367788
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEE-EEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
+.+..+.++++. +++..+.+++......... +...++ .. +++|.+++++| ..|+
T Consensus 184 ~~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeec--cccc
Confidence 888888888655 8999999998765211111 233332 56 89999999999 5553
No 283
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.38 E-value=4.9e-07 Score=83.02 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=35.9
Q ss_pred CcEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCcc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIW 46 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w 46 (303)
++|+|||||++||+||..|++.| ++|+|+|+++.+||..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 37999999999999999999987 8999999999999843
No 284
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.38 E-value=2.2e-06 Score=74.09 Aligned_cols=137 Identities=21% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC-----------CCCCccCc------CCCC--------ceEEecCc-
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-----------CYASIWKK------YSYD--------RLRLHLAK- 60 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~-----------~~gg~w~~------~~~~--------~~~~~~~~- 60 (303)
..||+|||||.+|.++|..|++.|-+|.++||+- +.||.... .+.+ +..+....
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk 124 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK 124 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence 5799999999999999999999999999999964 33331100 0000 01111111
Q ss_pred -ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEee
Q 022090 61 -QFCQLPHLPFPSSYPM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (303)
Q Consensus 61 -~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 138 (303)
.-..||...++.+... -.+...+.+.+++.+.....-. ..+.+|.++-.++ +-..-|+.++..+ ++.+ ..|
T Consensus 125 ~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~--~eeGtV~sLlee~-gvvkGV~yk~k~g---ee~~-~~A 197 (509)
T KOG1298|consen 125 EVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR--LEEGTVKSLLEEE-GVVKGVTYKNKEG---EEVE-AFA 197 (509)
T ss_pred eeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE--EeeeeHHHHHhcc-CeEEeEEEecCCC---ceEE-Eec
Confidence 1111222222222211 1123456666776665442111 4455666665554 1222344444333 3356 678
Q ss_pred CEEEEccCCCCC
Q 022090 139 RFLVVASGETTN 150 (303)
Q Consensus 139 d~vIlAtG~~~~ 150 (303)
-.-|+|+|.+|+
T Consensus 198 pLTvVCDGcfSn 209 (509)
T KOG1298|consen 198 PLTVVCDGCFSN 209 (509)
T ss_pred ceEEEecchhHH
Confidence 889999999874
No 285
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.37 E-value=3.7e-06 Score=71.07 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=34.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..|+|||+|.|||+++..+...|-.|+++|++..+||.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 36999999999999999999998789999999988884
No 286
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.37 E-value=1.1e-06 Score=76.52 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=99.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC--------CccCcCCCCceEEecCcccccCCCCCCCC----
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHLPFPS---- 72 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g--------g~w~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (303)
+.-.+|||+|.+..+++...... +.+|.++-..+.+. ..|.+. .+. ..-.+.+-+|..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-dpn-------~~k~lrfkqwsGkeRs 249 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-DPN-------SAKKLRFKQWSGKERS 249 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecC-CCC-------hhhheeecccCCccce
Confidence 45789999999999888776654 66888887665433 123321 000 000001111100
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 73 ----SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 73 ----~~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
-...|.+.+++-. +..-|+.+ ..+..|..++..+ ..|.++++ .+ |.||.++||||
T Consensus 250 iffepd~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG-- 308 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG-- 308 (659)
T ss_pred eEecCCcceeChhHCcc-----cccCceEE--EeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC--
Confidence 0012233333222 12223333 6667777776655 56788776 67 99999999999
Q ss_pred CCCCCCC-CCCc-cccccCCCCCccEEecc-cCCCCC--CCCCCeEEEECCCccHHHHHHHHhhc----cCceEEEeecC
Q 022090 149 TNPFTPD-IRGL-CSFCSSATGTGEVIHST-QYKNGK--PYGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVVRSP 219 (303)
Q Consensus 149 ~~p~~p~-~~g~-~~~~~~~~~~g~~~~~~-~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~vt~~~r~~ 219 (303)
.+|...+ |... +.. +.+-.++|.. +|..-. ....+.|.|||+|+.|-|+|+.|.+. |.+|+.+.-..
T Consensus 309 ~~Pk~l~~~~~A~~ev----k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek 384 (659)
T KOG1346|consen 309 VRPKKLQVFEEASEEV----KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK 384 (659)
T ss_pred cCcccchhhhhcCHHh----hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc
Confidence 6665433 2111 111 0011233332 222111 11237899999999999999999874 55776664443
No 287
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=2.6e-06 Score=71.99 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=54.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC--ceEEecCcccccCCCCCCCCCCCCCCCHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (303)
++|++|||||.+|+.+|..|+++|.+|.|+|+++++||.......+ ++.++.-. | .-...+...+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYG--------p----HIFHT~~~~Vw 68 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYG--------P----HIFHTDNKRVW 68 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeecc--------C----ceeecCchHHH
Confidence 3799999999999999999999999999999999999976544222 22222100 0 01123456888
Q ss_pred HHHHHHHHHc
Q 022090 85 EHLDHYVSHF 94 (303)
Q Consensus 85 ~~l~~~~~~~ 94 (303)
+|+..+.+-.
T Consensus 69 dyv~~F~e~~ 78 (374)
T COG0562 69 DYVNQFTEFN 78 (374)
T ss_pred HHHhhhhhhh
Confidence 9988887644
No 288
>PLN02268 probable polyamine oxidase
Probab=98.36 E-value=5e-07 Score=82.63 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=35.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
++|+|||||++||+||+.|.+.|++|+|+|+++.+||-
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999999983
No 289
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.35 E-value=8.3e-06 Score=77.68 Aligned_cols=110 Identities=18% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+.+|+|||||+.|+..|..|.+.|.+|+++|+.+.+. +. -..++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll----------------------~~-----------~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL----------------------PL-----------LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc----------------------cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999987532 00 01245566
Q ss_pred HHHHH-HHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecC---CCC-----ceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPG-----REIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~-~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~-----~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+.+.. +..++.. ++++.|.+++..+......+...+.. ..+ .+..+ +.+|.|++|+| ..|+..
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN 430 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence 66643 4566655 89999999976542222444433211 000 01137 89999999999 556543
No 290
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.33 E-value=1.2e-05 Score=76.23 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.5
Q ss_pred cEEEECCcHHHHHHHHHHh----hCCCCeEEEecCCC
Q 022090 9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC 41 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~----~~g~~v~iie~~~~ 41 (303)
||+|||+|.|||+||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 291
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.33 E-value=1e-06 Score=81.93 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=36.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 46 (303)
.||+|||||++||++|..|+++|++|+|+|+++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999999999843
No 292
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.33 E-value=8.1e-06 Score=76.27 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=35.9
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
...+||+|||||.|||.||..+++.|.+|+|+||....+|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 4568999999999999999999999999999999875543
No 293
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.33 E-value=9.6e-07 Score=81.41 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=36.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI 45 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~ 45 (303)
++||+|||||++||++|..|.++ |++|+|+|+++.+||.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 36999999999999999999999 9999999999999884
No 294
>PLN02676 polyamine oxidase
Probab=98.33 E-value=1.1e-06 Score=81.16 Aligned_cols=47 Identities=34% Similarity=0.478 Sum_probs=41.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYD 52 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~ 52 (303)
..+||+|||||++||++|..|+++|. +|+|+|+++.+||.+....+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~ 72 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA 72 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC
Confidence 46799999999999999999999998 699999999999976654343
No 295
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.32 E-value=7.7e-06 Score=76.27 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
..+||+|||+|.||++||..++ +.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4589999999999999999997 569999999875
No 296
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=6.7e-07 Score=80.49 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=35.9
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
++|+|+|||+|||+||..|+++|++|+|+|+++.+||
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999999998
No 297
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.32 E-value=2.8e-05 Score=77.34 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
.+||+|||+|.+||++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999764
No 298
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.32 E-value=7.2e-06 Score=74.96 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeE-EEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
...+.+.|.+.+++.++++ +++++|+++..+++.+.. .|...+. ... +.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~------~~~-i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG------THR-ITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC------cEE-EEcCEEEEcCCCcc
Confidence 4567888888888888666 999999999765312322 1232221 146 89999999999654
No 299
>PLN02546 glutathione reductase
Probab=98.30 E-value=1.1e-05 Score=75.58 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=73.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|+.|+.+|..|...|.+|+++++.+.+.. .+ ..++.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~----------------------~~-----------d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR----------------------GF-----------DEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc----------------------cc-----------CHHHHHH
Confidence 46899999999999999999999999999998764310 00 1256677
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..++.+++. ++++.+.++...+ ++...+...++ .. ..+|.||+|+| ..|+.
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNT 352 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCC
Confidence 777777778766 8899999987643 23344443321 33 45899999999 55554
No 300
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.29 E-value=1.8e-05 Score=72.11 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred CcEEEECCcHHHHHHHHHHhh--------------CCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~--------------~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (303)
.+|+|||||+.|+.+|..|++ .+.+|+++++.+.+. +.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll----------------------~~------ 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL----------------------GS------ 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc----------------------cc------
Confidence 389999999999999999876 368899999876431 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 74 ~~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
+ ...+.+++.+..++.+++. ++++.|++++.+ .|.+.++ ++ +++|.+|.|+|.
T Consensus 226 ---~--~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 ---F--DQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGV 278 (424)
T ss_pred ---C--CHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCC
Confidence 0 1256677788888888766 889999888632 2555554 56 899999999994
No 301
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.28 E-value=1.1e-06 Score=81.99 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=35.1
Q ss_pred EEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (303)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 46 (303)
|+|||||++||+||..|++.|++|+|+|+++.+||..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999999853
No 302
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.28 E-value=1.3e-06 Score=81.15 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.3
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 47 (303)
+||+|||||++||++|..|+++|++|+|+|+++.+||+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 5899999999999999999999999999999999998543
No 303
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.27 E-value=1.5e-06 Score=77.15 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=36.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 46 (303)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 699999999999999999999999999999999999853
No 304
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.26 E-value=1.4e-06 Score=77.40 Aligned_cols=39 Identities=28% Similarity=0.464 Sum_probs=35.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASI 45 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~ 45 (303)
..+|+|||||.|||+||.+|.+.|+ +++|+|..+++||-
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4689999999999999999998765 89999999999983
No 305
>PLN02568 polyamine oxidase
Probab=98.23 E-value=2e-06 Score=80.27 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=37.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC-----CCeEEEecCCCCCCccC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWK 47 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~iie~~~~~gg~w~ 47 (303)
.+||+|||||++||++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 479999999999999999999887 89999999999999654
No 306
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.22 E-value=1.7e-06 Score=77.93 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=36.5
Q ss_pred cEEEECCcHHHHHHHHHHhhCC--CCeEEEecCCCCCCccC
Q 022090 9 EVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWK 47 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g--~~v~iie~~~~~gg~w~ 47 (303)
+|+|||||++||++|+.|++++ .+++|||+++.+||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 6999999999999999999999 89999999999999544
No 307
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.22 E-value=1.9e-05 Score=73.84 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||||+.|+.+|..|+..+.+|+++++.+.+. . ...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHH
Confidence 4689999999999999999999999999998765321 0 012
Q ss_pred HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
+...++. .++.. ++++.++++..++ +....|.+.++.++ +..+ +.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCch
Confidence 3333333 46554 8999998886543 12223555543222 2257 89999999999 555543
No 308
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=9e-06 Score=72.18 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~ 39 (303)
..+||+|||||.||+.+|...++.|.+.+++..+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999999888764
No 309
>PRK10262 thioredoxin reductase; Provisional
Probab=98.21 E-value=2.5e-05 Score=68.53 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999875321 00134455
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+..+..+++. ++++.++++..++ .+.-.|.+.+...++ +..+ +.+|.||+|+| ..|+.
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence 555556666555 8899999987543 222235444321100 2257 89999999999 55544
No 310
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.19 E-value=1.9e-06 Score=79.52 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=34.2
Q ss_pred CcEEEECCcHHHHHHHHHHhhC------CCCeEEEecCCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYAS 44 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~------g~~v~iie~~~~~gg 44 (303)
++|+|||||++||++|..|.+. |.+|+|+|+++.+||
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 4799999999999999999986 379999999999998
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.18 E-value=2.3e-05 Score=67.73 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=65.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
..+|+|||+|.+|+.+|..|++.+.+|+++++.+... . ...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~----~~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------A----EKI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------c----CHH
Confidence 4689999999999999999999999999999865310 0 011
Q ss_pred HHHHHHHc-CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 87 l~~~~~~~-~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
+.+.++.. +++. ++++.+.++..++ ....+.+.+...+ +..+ +.+|.||+|+| ..|+
T Consensus 182 ~~~~l~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~~~ 239 (300)
T TIGR01292 182 LLDRLRKNPNIEF--LWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIG--HEPN 239 (300)
T ss_pred HHHHHHhCCCeEE--EeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeC--CCCC
Confidence 22333333 6554 8889999987543 3233444332111 2267 89999999999 4444
No 312
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.13 E-value=2.9e-06 Score=77.20 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=39.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 47 (303)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 468999999999999999999999999999999999999765
No 313
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.13 E-value=3.8e-06 Score=74.48 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=38.9
Q ss_pred CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
..+.+.+||+|+|+|.+||++|..|.+.|++|+|+|.++.+||
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3345678999999999999999999999999999999998887
No 314
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.13 E-value=3.3e-06 Score=77.69 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.0
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
+|+|||||++||++|..|.++|++|+|+|+++.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999988883
No 315
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.10 E-value=4e-05 Score=71.69 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||||..|+.+|..|+..+.+|+++++.+.+. . ..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------------------~--------~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------------------A--------DQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------------------c--------cHH
Confidence 4689999999999999999999999999998876421 0 012
Q ss_pred HHHHHHH-cCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~-~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.... .++.. ++++.++++..++ +..-.+.+.+..++ +..+ +.+|.|++|+| ..|+.
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~-g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG-DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence 3333332 36554 9999999997653 22223455443222 3357 89999999999 55543
No 316
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.09 E-value=9.4e-06 Score=72.65 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.3
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~ 42 (303)
.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999976544
No 317
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.06 E-value=3e-05 Score=68.39 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCC--CeEEEecCCCCCCccCcCCCCce--EEecCcccccCCCCCCC-------CC-
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFP-------SS- 73 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~iie~~~~~gg~w~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~- 73 (303)
..++|+|||||.++..++..|.+.+. +|+++-|+...--.- +..+ ..-.|.....|...+.. ..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 45789999999999999999999875 789998876421000 0000 00000000000000000 00
Q ss_pred --CCCCCCHHHHHHHH-HH-HHHHc--CCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccC
Q 022090 74 --YPMFVSRAQFIEHL-DH-YVSHF--NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (303)
Q Consensus 74 --~~~~~~~~~l~~~l-~~-~~~~~--~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG 146 (303)
...-.+. ++.+.+ +. |.++. .-...++.+++|++++..+ ++.|.+.+.+..++ +..+ +.+|.||+|||
T Consensus 265 ~~ny~~i~~-~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilATG 338 (341)
T PF13434_consen 265 HTNYGGIDP-DLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILATG 338 (341)
T ss_dssp GGTSSEB-H-HHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE---
T ss_pred hhcCCCCCH-HHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEcCC
Confidence 0001112 222211 11 11111 1234567899999999887 44899999886554 4567 89999999999
No 318
>PLN02529 lysine-specific histone demethylase 1
Probab=98.06 E-value=6.4e-06 Score=79.00 Aligned_cols=40 Identities=38% Similarity=0.383 Sum_probs=37.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..++|+|||||++|+++|..|+++|++|+|+|+++.+||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999999999999888874
No 319
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.05 E-value=6.4e-06 Score=74.15 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..+||+|||||..|.-||..++-+|.++.++|+++...|+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 3589999999999999999999999999999999866664
No 320
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.05 E-value=4.4e-05 Score=68.08 Aligned_cols=107 Identities=20% Similarity=0.227 Sum_probs=83.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
...|+++|+|..|+.+|..|...+.+|+++++.+.. .++ .-...+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------~~~------------------------lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------LPR------------------------LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------hhh------------------------hhhHHHHHH
Confidence 457999999999999999999999999999988742 100 112356666
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~~~ 157 (303)
...+.+..++.. +.++.+.+++.++.+....|.+.++ .+ +.+|.||+++| ..|+.+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence 777777778766 8999999998877555566777765 67 89999999999 777777655
No 321
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.04 E-value=6.8e-05 Score=67.28 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=30.8
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~ 42 (303)
||+|||+|.|||++|..|.+. ++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999998 999999998744
No 322
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.01 E-value=6.4e-06 Score=70.37 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=37.5
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
|..+.+..+|+|||+|++||+||..|.++ .+|++||.+..+||-
T Consensus 2 ~~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 2 MNQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 33445678999999999999999988875 799999999999983
No 323
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.00 E-value=7.6e-06 Score=75.58 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=34.6
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999999887
No 324
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.00 E-value=0.00012 Score=61.12 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=34.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCC------CCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g------~~v~iie~~~~~gg 44 (303)
..++|+|+|||+.|+++|+.|.+++ .+++|||+....||
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 4579999999999999999999996 78999999876654
No 325
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.98 E-value=3.9e-05 Score=70.89 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
..+...++..+...++++|..+ ..++.|++|.... ++.|-|.+..+ . +++.++|.|+|.+.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence 3456788889999999999776 9999999998765 45566777663 4 89999999999644
No 326
>PLN02487 zeta-carotene desaturase
Probab=97.97 E-value=1.2e-05 Score=75.40 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCcc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w 46 (303)
+++|+|||||++|+++|..|.+.|++|+|+|+.+..||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999999888743
No 327
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.95 E-value=1.3e-05 Score=77.36 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=37.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3579999999999999999999999999999999988874
No 328
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.94 E-value=4.5e-05 Score=64.55 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~ 40 (303)
.+++|+|+|||.+|+++|.++.++ +. +|.|+|..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 578999999999999999999876 54 899999865
No 329
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.91 E-value=1.6e-05 Score=74.91 Aligned_cols=40 Identities=35% Similarity=0.482 Sum_probs=36.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--CCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--~~gg~ 45 (303)
..+||+|||+|.+||+||..+++.|.+|+|+||.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 35899999999999999999999999999999998 56663
No 330
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.89 E-value=5.6e-05 Score=64.61 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=32.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~ 40 (303)
.++||+|||||..|.+.|..|+++ |++|+++|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 468999999999999999999875 79999999987
No 331
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.88 E-value=0.00013 Score=61.82 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.3
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~~g 43 (303)
..+|+||||||+.|++.|++|.-+ +.+|.++|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 468999999999999999999877 88999999988665
No 332
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.88 E-value=0.00013 Score=64.74 Aligned_cols=59 Identities=19% Similarity=0.403 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
..+...+.++++.+|.++ +|+++|+.+...+. ....|.+.++ .+ +.+|+||+|.|+.++
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~~-~~~~v~~~~g-------~~-i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIEDN-EVLGVKLTKG-------EE-IEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecCC-ceEEEEccCC-------cE-EecCEEEEccCcchH
Confidence 567777888888888666 99999999998762 2345666554 57 999999999997443
No 333
>PLN02612 phytoene desaturase
Probab=97.87 E-value=2.1e-05 Score=74.29 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=36.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~ 45 (303)
.+++|+|||||++|+++|..|.++|++|+++|+++.+||.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 3578999999999999999999999999999999888873
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.86 E-value=0.00024 Score=65.29 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998865
No 335
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.85 E-value=0.00015 Score=64.66 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=63.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhh----CC--CCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCH
Q 022090 7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~----~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
..+|+|||+|++|+.+|..|++ .| .+|+++. .+.+. +. ..
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l----------------------~~-----------~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL----------------------PG-----------FP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc----------------------cc-----------CC
Confidence 3589999999999999999975 34 4788883 22110 00 01
Q ss_pred HHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 81 ~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
..+...+.+.+++.+++. +.++.+++++.. .+.+.++ .+ +.+|.||+|+|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~~------~v~~~~g-------~~-i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPDG------ALILADG-------RT-LPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEE--EeCCeeEEEcCC------eEEeCCC-------CE-EecCEEEEccCC
Confidence 245667777778888766 888889887422 3555443 56 899999999994
No 336
>PRK12831 putative oxidoreductase; Provisional
Probab=97.81 E-value=0.00035 Score=64.44 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..++|+|||+|..|+-+|..|.+.|.+|+++.+..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34699999999999999999999999999998754
No 337
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.80 E-value=0.0002 Score=61.18 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=35.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC--CCCCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI 45 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~--~~gg~ 45 (303)
..+||+|||+|.+||.+|..|++.|.+|+|+|+.. .+||+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 35799999999999999999999999999999753 56663
No 338
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.79 E-value=2.9e-05 Score=72.21 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=37.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~ 47 (303)
+||+|||+|++|+.+|..|++.|++|+++|+....|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5999999999999999999999999999999998888873
No 339
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.00034 Score=62.19 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~ 40 (303)
.+|+|||+|..|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99998764
No 340
>PLN03000 amine oxidase
Probab=97.77 E-value=4.1e-05 Score=74.26 Aligned_cols=43 Identities=30% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 48 (303)
...+|+|||||++|+++|..|.+.|++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3579999999999999999999999999999999999995543
No 341
>PLN02976 amine oxidase
Probab=97.72 E-value=4.9e-05 Score=76.66 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 48 (303)
..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3579999999999999999999999999999999999997654
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.72 E-value=0.00041 Score=65.48 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998763
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.71 E-value=6.3e-05 Score=69.79 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 344
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.71 E-value=3.4e-05 Score=66.80 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCY 42 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~~~ 42 (303)
||++|||+|++|+.+|.+|++.+ .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999997 699999997743
No 345
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.70 E-value=5.3e-05 Score=66.61 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=35.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCC--eEEEecCCCCCCcc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIW 46 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~--v~iie~~~~~gg~w 46 (303)
...+|+|+|||++||++|+.|++++.+ ++++|+.+.+||..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 357999999999999999999999765 56699999999843
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.65 E-value=0.0019 Score=63.35 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~ 40 (303)
.++|+|||||..|+-+|..|.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99998764
No 347
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.63 E-value=0.0012 Score=58.12 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=32.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecC--CCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE--NCYA 43 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~--~~~g 43 (303)
..+||+|+|||+.|+++|..|... ..++.++|.. +.++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 478999999999999999999865 4689999987 4444
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.57 E-value=0.0012 Score=60.94 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..+|+|||+|..|+.+|..|.+.|. +|+++++.+.. .+ +. ...
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~------------------------~~--~~-------~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE------------------------EM--PA-------SEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------cC--CC-------CHH---
Confidence 4689999999999999999999998 89999876421 00 00 011
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEee---------c-----CCCCceeEEEEeeCEEEEccCCCCCC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN---------L-----LSPGREIEEYYSGRFLVVASGETTNP 151 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~---------~-----~~~~~~~~~~~~ad~vIlAtG~~~~p 151 (303)
..+.+++.|++. ++++.+..+..++ .+.-.|.+.. + ..+ ...+ +.+|.||+|+| ..|
T Consensus 317 -~~~~~~~~GV~i--~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g--~~~~-i~~D~vi~a~G--~~p 387 (457)
T PRK11749 317 -EVEHAKEEGVEF--EWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEG--SEFT-LPADLVIKAIG--QTP 387 (457)
T ss_pred -HHHHHHHCCCEE--EecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCC--ceEE-EECCEEEECcc--CCC
Confidence 233445667665 8888888886543 1111122211 0 001 2257 89999999999 555
Q ss_pred C
Q 022090 152 F 152 (303)
Q Consensus 152 ~ 152 (303)
+
T Consensus 388 ~ 388 (457)
T PRK11749 388 N 388 (457)
T ss_pred C
Confidence 4
No 349
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00011 Score=62.48 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
++||+|||||.+|++|+..|.++|.++.|+.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4799999999999999999999999999998754
No 350
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.52 E-value=0.0021 Score=58.24 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC----CCCeEEEecCCCCCCcc
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIW 46 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~iie~~~~~gg~w 46 (303)
.++.=|||+|+|+|++|..|.+. |-+|+|+|+.+..||..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 35788999999999999999876 56999999999888744
No 351
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.51 E-value=0.0056 Score=56.60 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
.++|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999996 799998865
No 352
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.49 E-value=0.00014 Score=64.11 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=69.4
Q ss_pred cEEEECCcHHHHHHHHHHhhC--------------CCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (303)
.++||||||.|+..|.+|++. .++|+++|..+.+= +.
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL----------------------~m------- 270 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL----------------------NM------- 270 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH----------------------HH-------
Confidence 589999999999999999763 35789998877421 00
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 75 ~~~~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
-.+.+.+|.++...+.++.. +.++.|..+..+. ..+...++ +..+ +.|-.+|-|||...+|..-
T Consensus 271 ----Fdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~----I~~~~~~g-----~~~~-iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 271 ----FDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT----IHAKTKDG-----EIEE-IPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred ----HHHHHHHHHHHHhhhcccee--ecccEEEeecCcE----EEEEcCCC-----ceee-ecceEEEecCCCCCchhhh
Confidence 01245555555555667666 8888888885543 33333332 4467 8999999999976665544
Q ss_pred C
Q 022090 155 D 155 (303)
Q Consensus 155 ~ 155 (303)
.
T Consensus 335 ~ 335 (491)
T KOG2495|consen 335 D 335 (491)
T ss_pred h
Confidence 3
No 353
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.49 E-value=0.00015 Score=65.67 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
++||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999874
No 354
>PRK02106 choline dehydrogenase; Validated
Probab=97.45 E-value=0.00017 Score=68.25 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhh-CCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~iie~~~ 40 (303)
..+|++|||+|.+|+.+|.+|++ .|.+|+|+|+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 799999999985
No 355
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.40 E-value=0.0024 Score=56.21 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=37.9
Q ss_pred ceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCCC
Q 022090 98 PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (303)
Q Consensus 98 ~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p~ 155 (303)
++++-+++|.+++...+ +.+.+.+....++ +..+ +++|.||+|||- ...+|.
T Consensus 293 v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY--~~~~P~ 344 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGY--RRAVPS 344 (436)
T ss_pred eeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEeccc--ccCCch
Confidence 44577889999988763 5588888776554 5577 899999999994 344554
No 356
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.36 E-value=0.0018 Score=65.28 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4689999999999999999999996 57888875421 11
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
.+.+.+++.++.. +.++.++.+..++ ..-.|.+....+ ...+ +.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence 2334456667655 8888888886433 222334432100 1257 89999999999 55543
No 357
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00026 Score=60.37 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.6
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~g 43 (303)
..|-|||||.+|..+|++++++|++|.++|-.+.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 469999999999999999999999999999877544
No 358
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00024 Score=66.66 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
......+|++|||+|.+|..+|.+|++.|.+|+++|+..
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 344567999999999999999999998899999999974
No 359
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.32 E-value=0.0039 Score=60.18 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
.++|+|||+|..|+-+|..+.++|. +|+++.+.+
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3689999999999999999999997 699988764
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.32 E-value=0.014 Score=56.33 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
.++|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999987 599998764
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.28 E-value=0.0039 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
.++|+|||+|..|+.+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4689999999999999999999886 788776544
No 362
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.18 E-value=0.00099 Score=58.65 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC----CCCe-EEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA 81 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v-~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
+..|.|||+|+-|-.+|..|.+. |.+| -+|+.....+. .-.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---------------------------------iLPe 393 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---------------------------------ILPE 393 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---------------------------------hhHH
Confidence 46899999999999999999764 5555 34443221110 0112
Q ss_pred HHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCC
Q 022090 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (303)
Q Consensus 82 ~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~ 152 (303)
.+.+|-.+-+++.|+.+ +-|..|.++.... +...+.+.++ .+ ++.|.||+|+| -.|+
T Consensus 394 yls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN 450 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPN 450 (659)
T ss_pred HHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCc
Confidence 34455555667778777 8899999887765 5577778776 67 89999999999 5554
No 363
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.17 E-value=0.0066 Score=60.70 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4689999999999999999999999999998764
No 364
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.16 E-value=0.00059 Score=61.35 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=31.3
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
+||+|||+|++|+++|..|.+.|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 365
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.03 E-value=0.0025 Score=58.69 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|||+|.+|+-+|..|...+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 4689999999999999999999999999998864
No 366
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.99 E-value=0.00068 Score=63.75 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=30.2
Q ss_pred cEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~ 40 (303)
|++|||+|.+|+.+|.+|++.+ ++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 367
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.99 E-value=0.07 Score=49.64 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~~ 41 (303)
.++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4689999999999999988888875 7999987654
No 368
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.01 Score=51.49 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
.++|+|||||-+.+..|..|.+.+.+|+++-|.+.+- .. +.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence 3599999999999999999999999999998876521 01 22
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
+.+.++... ...+++++.+..+.-++ .-.|.+.+.. + +... +.+|.|+++.| ..|.+
T Consensus 184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~-~--~~~~-~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVK-G--EEKE-LPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecC-C--ceEE-EEeceEEEecC--CCCch
Confidence 333333321 34448999998886543 2234554432 1 4467 89999999999 55554
No 369
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.97 E-value=0.00079 Score=59.82 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=36.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg 44 (303)
+.+|++|||+|+.||.+|..|++.|.+|+++|++...||
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 468999999999999999999999999999999976666
No 370
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0015 Score=54.99 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.1
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC-------CCeEEEecC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS-------IPYVILERE 39 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-------~~v~iie~~ 39 (303)
..+|+|||+|..||+.|..+.+.. .+|+++...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 369999999999999999888843 578888653
No 371
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.91 E-value=0.011 Score=58.85 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhC-C-CCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~-g-~~v~iie~~~ 40 (303)
.++|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 46899999999999999998887 5 3899998865
No 372
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.91 E-value=0.048 Score=52.57 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
.++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999985 799998764
No 373
>PLN02785 Protein HOTHEAD
Probab=96.89 E-value=0.0014 Score=62.10 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=31.5
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..+|++|||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 35899999999999999999999 68999999976
No 374
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.88 E-value=0.00026 Score=56.59 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=39.4
Q ss_pred CcEEEECCcHHHHHHHHHHhhC--CCCeEEEecCCC-CCCccCcC-CCCceEEecCc
Q 022090 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC-YASIWKKY-SYDRLRLHLAK 60 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~iie~~~~-~gg~w~~~-~~~~~~~~~~~ 60 (303)
.||+|+|+|.+||++|+...++ ..+|.|+|..-. .||.|... .+..+....|.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPA 133 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPA 133 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChH
Confidence 5999999999999999999866 679999998754 45578653 34444444443
No 375
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.82 E-value=0.0052 Score=53.06 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=72.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
.+++++|+|||+.++..|--++..|.++.++=|.+.+= ..+ .+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------------R~F-----------D~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------------RGF-----------DEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------------cch-----------hHHHHH
Confidence 46899999999999999999999999998887766420 000 124555
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCCC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~p 154 (303)
.+.+..+..+++. +.++.++.+....+ +...+....+ .. ..+|.|+.|+| ..|+..
T Consensus 235 ~v~~~~~~~ginv--h~~s~~~~v~K~~~-g~~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk 290 (478)
T KOG0405|consen 235 LVTEHLEGRGINV--HKNSSVTKVIKTDD-GLELVITSHG-------TI-EDVDTLLWAIG--RKPNTK 290 (478)
T ss_pred HHHHHhhhcceee--cccccceeeeecCC-CceEEEEecc-------cc-ccccEEEEEec--CCCCcc
Confidence 5666666667666 88888988887663 3344444443 23 45899999999 555544
No 376
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.82 E-value=0.0013 Score=43.32 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=27.1
Q ss_pred EECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 191 VVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 191 ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
|||+|.+|+-+|..|++.+.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999987
No 377
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.76 E-value=0.026 Score=57.08 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILERE 39 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~ 39 (303)
.++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 57999999999999999999999985 6777654
No 378
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.64 E-value=0.0025 Score=57.76 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=34.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCc
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~ 48 (303)
..+||+|+|.|..-..+|..|++.|.+|+-+|+++..||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 4699999999999999999999999999999999999997764
No 379
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.59 E-value=0.0025 Score=49.69 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
+|+|||||..|.++|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998865
No 380
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0091 Score=51.42 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=73.6
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
+-+-+|||||+.+|.||-.|+-.|++|++.-|+-.+-| + ..++.+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~ 243 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAEL 243 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHH
Confidence 45789999999999999999999999998877643211 1 1377888
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~ 148 (303)
+.++.+..|+.+ .-....+.++..+ ++...|...+..++ ++.+ -.||.|+.|.|.-
T Consensus 244 v~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 244 VAEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNTG--EEGE-EEYDTVLWAIGRK 299 (503)
T ss_pred HHHHHHHhCCce--eecccceeeeecc-CCcEEEEeeccccc--cccc-chhhhhhhhhccc
Confidence 888888889875 4455566776655 35566766655443 3234 4689999999953
No 381
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.55 E-value=0.0025 Score=57.42 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=31.5
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
++|+|||+|.+|+++|..|++.|.+|+++++++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999877
No 382
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.51 E-value=0.0054 Score=57.96 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=67.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHHH
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (303)
...-+|||||.-|+.+|..|...|.++++++-.+.+- . ...+ ..-.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM--------------------e-----------rQLD-~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM--------------------E-----------RQLD-RTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH--------------------H-----------Hhhh-hHHHHH
Confidence 3457999999999999999999999999997654310 0 0000 012234
Q ss_pred HHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCCCC
Q 022090 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (303)
Q Consensus 87 l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p~~ 153 (303)
|+...++.++.+ +++...+.+.... ..-.+.++++ .. +.||.||.|+| -+|+.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG-------~~-i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG-------TE-IPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC-------Cc-ccceeEEEecc--ccccc
Confidence 566667778776 6666665554422 3445677765 56 89999999999 55543
No 383
>PRK13984 putative oxidoreductase; Provisional
Probab=96.49 E-value=0.11 Score=49.84 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC------CeEEEe
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE 37 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~------~v~iie 37 (303)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999988753 566653
No 384
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.48 E-value=0.0045 Score=56.74 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCeEEEECCCccHHHHHHHHh-hccCceEEEeecCe
Q 022090 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSPV 220 (303)
Q Consensus 185 ~~~~v~ViG~G~~g~e~a~~l~-~~g~~vt~~~r~~~ 220 (303)
.+++|+|||+|++|+.+|..|. +.|.+|+++++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999765 56999999999983
No 385
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.48 E-value=0.035 Score=55.61 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CC-CeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~iie~~~ 40 (303)
..++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 357899999999999999998876 76 799998765
No 386
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.44 E-value=0.018 Score=51.34 Aligned_cols=60 Identities=7% Similarity=-0.003 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCCC
Q 022090 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (303)
Q Consensus 79 ~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~p 151 (303)
...++.+.|...+++.++.+ +++++|++| ++ +.|.+.+... ... +.||.||+|||..+.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~------~~~-~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDG------QST-IEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCC------ceE-EecCEEEEcCCCcccc
Confidence 57899999999999988776 999999999 22 3488877532 146 8999999999975543
No 387
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.0055 Score=53.43 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
|......++|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4443344689999999999999999999999999999875
No 388
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.38 E-value=0.0033 Score=56.82 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=31.1
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~ 220 (303)
+|+|||+|.+|+|+|..|++.|.+|+++++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 689999999999999999999999999998873
No 389
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.35 E-value=0.0051 Score=49.09 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.4
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999875
No 390
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.25 E-value=0.051 Score=49.45 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=64.5
Q ss_pred EEECCcHHHHHHH-HHHh----hCCCCeEEEecCCCCCCccCcCCCCceEEecCcccccCCCCCCCCCCCCCCCHHHHHH
Q 022090 11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (303)
Q Consensus 11 vIIGaG~aGl~~A-~~l~----~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (303)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6688889998887 4443 359999999775421 11225777
Q ss_pred HHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEE-EEeecCCCCceeEEEEeeCEEEEccCCCC
Q 022090 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (303)
Q Consensus 86 ~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~ad~vIlAtG~~~ 149 (303)
.+.+..++.+... +.+++|.+++..+ +...+ ...++ +... +++|.||+|+|.+.
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g-----~~~~-i~AD~VVLAtGrf~ 318 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH-----GDIP-LRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC-----ceEE-EECCEEEEeCCCcc
Confidence 7877777777655 8999999998765 33332 22222 2257 89999999999643
No 391
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.21 E-value=0.15 Score=48.37 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCC-CCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~iie~~~ 40 (303)
.++|+|||+|..|+.+|..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 468999999999999999898888 5688887764
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.0071 Score=50.09 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
++++|||+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 3799999999999999999999999999999763
No 393
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.12 E-value=0.0053 Score=49.21 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
++|.|||.|+.|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999999999999998764
No 394
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.08 E-value=0.0076 Score=55.72 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCCeEEEECCCccHHHHHHHHhh--ccCceEEEeecC
Q 022090 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP 219 (303)
Q Consensus 185 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~vt~~~r~~ 219 (303)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46899999999999999999987 699999999998
No 395
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.02 E-value=0.0075 Score=56.30 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=33.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhC-CCCeEEEecCCCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY 42 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~iie~~~~~ 42 (303)
..||.+|||||.||+.+|.+|.+. ..+|+++|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999998 6799999987633
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.00 E-value=0.0055 Score=44.02 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=31.5
Q ss_pred CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.++++++|||+|..|..-+..|.+.|.+||++....
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 568999999999999999999999999999997763
No 397
>PRK07236 hypothetical protein; Provisional
Probab=95.91 E-value=0.0091 Score=53.78 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+|+|||+|.+|+.+|..|++.|.+|++++|.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4789999999999999999999999999999987
No 398
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.91 E-value=0.0097 Score=55.17 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+.++|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 345799999999999999999999999999998876
No 399
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.89 E-value=0.0085 Score=54.41 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.1
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999975
No 400
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.88 E-value=0.012 Score=50.62 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
.+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998764
No 401
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.86 E-value=0.0099 Score=58.75 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+++|+|||+|+.|+.+|..|++.|++||++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999864
No 402
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.83 E-value=0.01 Score=42.68 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..++|+|||+|..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999998873
No 403
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.82 E-value=0.0087 Score=52.73 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=29.0
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 68999999999999999999999999999987
No 404
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.81 E-value=0.012 Score=47.79 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+....|+|||+|++|+-+|..|++.|.+|.+++|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3456789999999999999999999999999999974
No 405
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.78 E-value=0.018 Score=46.92 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999998653
No 406
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.77 E-value=0.01 Score=53.66 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=31.8
Q ss_pred eeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCC
Q 022090 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (303)
Q Consensus 99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~ 147 (303)
.|++++.|++|+.++ +.+.|...++ .+ +.||+||+|+..
T Consensus 225 ~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~-~~ad~VI~a~p~ 263 (450)
T PF01593_consen 225 EIRLNTPVTRIERED--GGVTVTTEDG-------ET-IEADAVISAVPP 263 (450)
T ss_dssp GEESSEEEEEEEEES--SEEEEEETTS-------SE-EEESEEEE-S-H
T ss_pred eeecCCcceeccccc--cccccccccc-------eE-EecceeeecCch
Confidence 479999999999987 7788888876 46 899999999985
No 407
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.76 E-value=0.014 Score=50.89 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=31.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999875
No 408
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.012 Score=54.21 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.9
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
+|+|||.|.+|+++|..|.++|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998764
No 409
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.69 E-value=0.012 Score=53.18 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=32.8
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.++++|||||.+|++.|..|++.|.+|+++++.|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999999999999999999999999998
No 410
>PRK06847 hypothetical protein; Provisional
Probab=95.66 E-value=0.013 Score=52.44 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999986
No 411
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.66 E-value=0.028 Score=42.52 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCC-eEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~iie~~~ 40 (303)
..++++|||+|-+|-+++..|.+.|.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999997 99998864
No 412
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.63 E-value=0.022 Score=44.37 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILER 38 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~ 38 (303)
...+|+|||||..|..-|..|.+.|.+|+++.+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 357899999999999999999999999999954
No 413
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.57 E-value=0.016 Score=51.06 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.6
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
+|.|||.|+.||..|..|++.|++|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 79999999999999999999999999999875
No 414
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.56 E-value=0.021 Score=44.97 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+.+|+|+|+|.+|..||..|...|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999864
No 415
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.56 E-value=0.018 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 479999999999999999999999999999875
No 416
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.55 E-value=0.016 Score=52.36 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.4
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+.+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 417
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.015 Score=51.27 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=43.8
Q ss_pred CCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCCCCCccCcCCCC
Q 022090 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD 52 (303)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~~gg~w~~~~~~ 52 (303)
+..+||+|||.|..--.+|....+.|.+|+=+|+++..||.|....++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 456999999999999999999999999999999999999999876554
No 418
>PRK05868 hypothetical protein; Validated
Probab=95.53 E-value=0.014 Score=52.39 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=31.5
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
++|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 419
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.51 E-value=0.014 Score=51.54 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=29.7
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~ 218 (303)
.|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
No 420
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.47 E-value=0.019 Score=52.01 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=37.5
Q ss_pred EecccCCCCCCCCCCeEEEECCCccHHHHHHHHhhc-c-CceEEEeecC
Q 022090 173 IHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~vt~~~r~~ 219 (303)
..+..++.....+...|+|||+|.+|+-+|..|++. | .+|++++|..
T Consensus 17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 445556665555567899999999999999999985 8 4899999863
No 421
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.02 Score=49.38 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|+|||+|..|...|..|+..|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 422
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.024 Score=52.18 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999874
No 423
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.43 E-value=0.023 Score=53.00 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCCCCCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 1 M~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
|..+..-.+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44444556899999999999999999999999999998763
No 424
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.42 E-value=0.025 Score=43.57 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
|+|+|+|..|...|..|++.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998864
No 425
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.41 E-value=0.016 Score=46.80 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.7
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997765
No 426
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.39 E-value=0.029 Score=45.62 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~ 39 (303)
..++|+|||||-.|...|..|.+.|.+|+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999754
No 427
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.39 E-value=0.02 Score=44.55 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCCCCeEEEECCCccHHHHHHHHhhccCceEEEe
Q 022090 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216 (303)
Q Consensus 183 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~ 216 (303)
...+++|+|||+|..|..-+..|.+.|.+|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4568999999999999999999999999999984
No 428
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.23 Score=43.31 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=30.4
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
.+||+|||||-+|+.+|..|+---..|+++|-.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 57999999999999999999877668999986653
No 429
>PRK07233 hypothetical protein; Provisional
Probab=95.37 E-value=0.017 Score=52.73 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.5
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999999987
No 430
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.35 E-value=0.017 Score=51.76 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=29.9
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999864
No 431
>PRK06753 hypothetical protein; Provisional
Probab=95.35 E-value=0.018 Score=51.57 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=31.0
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999998
No 432
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.33 E-value=0.017 Score=51.65 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=30.7
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-+|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999999874
No 433
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.031 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=31.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 434
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.32 E-value=0.018 Score=51.95 Aligned_cols=38 Identities=34% Similarity=0.619 Sum_probs=33.2
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecCeeeee
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~~~lp 224 (303)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+..+.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~ 40 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLE 40 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccccc
Confidence 57999999999999999999999999999998423333
No 435
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.29 E-value=0.019 Score=52.72 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.2
Q ss_pred CeEEEECCCccHHHHHHHHhhcc--CceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g--~~vt~~~r~~ 219 (303)
++|+|||+|.+|+-+|..|++.| .+|++++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 47999999999999999999987 7899999875
No 436
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.024 Score=48.99 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
.+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 437
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.22 E-value=0.02 Score=51.77 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=31.7
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
++|+|||+|..|+-+|..|++.|.+|++++|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999987
No 438
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.19 E-value=0.021 Score=48.99 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.5
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999986
No 439
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.18 E-value=0.026 Score=45.99 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+.+++++|||+|.+|.--+..|.+.|.+||++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 567899999999999999999999999999997654
No 440
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.16 E-value=0.023 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=32.6
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.++++|||+|.+|+-.|..|.+.|.++++++|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 6899999999999999999999999999999986
No 441
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.16 E-value=0.019 Score=52.12 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=32.0
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+|+|||+|..|+-+|..|++.|.+|++++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3579999999999999999999999999999987
No 442
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.08 E-value=0.022 Score=46.24 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.6
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
...|+|||+|++|+-+|..|++.|.+|.+++++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999875
No 443
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.08 E-value=0.041 Score=48.10 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..+|+|||+|..|...|..|++.|.+|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3589999999999999999999999999999865
No 444
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.05 E-value=0.36 Score=45.97 Aligned_cols=66 Identities=11% Similarity=-0.038 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 80 ~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
...+...|.+.+.+.++.+ +.++.++++-.++++...-+...+..++ +... +.++.||+|||.+..
T Consensus 125 G~~i~~~L~~~~~~~gi~i--~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTF--LNEWYAVDLVKNQDGAVVGVIAICIETG--ETVY-IKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEE--EECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEE-EecCeEEECCCCccc
Confidence 5678888888777777655 8899999987653222333333221121 3356 899999999997663
No 445
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.05 E-value=0.022 Score=53.25 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=31.1
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||||.+|+-+|.+++++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999875
No 446
>PRK09126 hypothetical protein; Provisional
Probab=95.05 E-value=0.022 Score=51.26 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=31.4
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 447
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.04 E-value=0.035 Score=48.09 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=31.0
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.|||+|..|...|..|+..|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 448
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.04 E-value=0.027 Score=45.78 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCccHHHHHHHHhhccCceEEEeec
Q 022090 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (303)
Q Consensus 184 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~ 218 (303)
..+++++|||+|..|...+..|.+.|.+|+++.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 56899999999999999999999999999999654
No 449
>PRK07588 hypothetical protein; Provisional
Probab=95.02 E-value=0.025 Score=50.99 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=30.7
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999999886
No 450
>PRK07045 putative monooxygenase; Reviewed
Probab=95.01 E-value=0.025 Score=50.95 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.6
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 479999999999999999999999999999988
No 451
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.99 E-value=0.024 Score=50.63 Aligned_cols=28 Identities=46% Similarity=0.679 Sum_probs=25.0
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEE
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLV 215 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~ 215 (303)
.|+|||+|..|+|+|..+++.|.+|.++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 4899999999999999999999999999
No 452
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.99 E-value=0.072 Score=47.87 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeCeEEEEEEEeCCCCeEEEEEeecCCCCceeEEEEeeCEEEEccCCCCC
Q 022090 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (303)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~l~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ad~vIlAtG~~~~ 150 (303)
.+...+...+.+.+++ +.+. ++++.|++++.++ +.|.|.+.++ .. +.+|.||+|+|.++.
T Consensus 132 idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAG 191 (381)
T ss_pred cChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCcccc
Confidence 4556777777777776 7554 8999999998754 5688877654 46 799999999997553
No 453
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.98 E-value=0.032 Score=50.72 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.7
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
++|.|||.|..|+.+|..|+++|++|+.+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998764
No 454
>PLN02268 probable polyamine oxidase
Probab=94.96 E-value=0.024 Score=51.87 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=29.7
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999997654
No 455
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.94 E-value=0.025 Score=51.06 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=31.3
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 579999999999999999999999999999976
No 456
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.94 E-value=0.041 Score=49.20 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
...+|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35689999999999999999999999999999864
No 457
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.93 E-value=0.024 Score=50.78 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=30.6
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.|+|||+|.+|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999997
No 458
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.93 E-value=0.032 Score=47.87 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=30.1
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+++|||+|.+|.=+|..++++|++|-++++++
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~ 34 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN 34 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence 67999999999999999999999999999987
No 459
>PRK07208 hypothetical protein; Provisional
Probab=94.91 E-value=0.03 Score=52.01 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4689999999999999999999999999998865
No 460
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.87 E-value=0.043 Score=41.46 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
..+|+|||+|..|..+|..|.+.|+ +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3689999999999999999999999 799999865
No 461
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.87 E-value=0.049 Score=47.49 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=31.7
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
..+|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999875
No 462
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.86 E-value=0.027 Score=53.16 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=30.9
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||+|.+|+-+|..|+.+|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 479999999999999999999999999999865
No 463
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.038 Score=47.48 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.2
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999997653
No 464
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.85 E-value=0.066 Score=49.29 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..-+|+|||+|+.|.-+|..|++.|.+|.++++.+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999986
No 465
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.035 Score=51.59 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 185 ~~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+++++|||+|.+|+++|..|.++|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999999999999999999998776
No 466
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.84 E-value=0.028 Score=50.78 Aligned_cols=33 Identities=18% Similarity=0.501 Sum_probs=30.6
Q ss_pred CeEEEECCCccHHHHHHHHhhc--cCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~--g~~vt~~~r~~ 219 (303)
-+|+|||+|.+|+-+|..|++. |.+|++++|.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3799999999999999999999 99999999874
No 467
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.83 E-value=0.024 Score=51.32 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=25.7
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|++|+-+|..+++.|.+|++++|.+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~ 33 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK 33 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 58999999999999999999999999999986
No 468
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.83 E-value=0.019 Score=44.64 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=30.1
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|.|+|+|+.|.-+|..|+..|.+|+++.|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998875
No 469
>PRK08013 oxidoreductase; Provisional
Probab=94.82 E-value=0.027 Score=50.98 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=31.5
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|.-+|..|++.|.+|+++++.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 479999999999999999999999999999987
No 470
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.82 E-value=0.034 Score=50.19 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=32.0
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecCe
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~~ 220 (303)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999999883
No 471
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.78 E-value=0.044 Score=42.90 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.+||-|..|...|.+|.++|++|.++|+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 489999999999999999999999999999875
No 472
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.033 Score=50.81 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+||+|+|+|..|+-+|.+|+++|.+||+.++++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 589999999999999999999999999999987
No 473
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.77 E-value=0.031 Score=49.87 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.7
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999998754
No 474
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.77 E-value=0.028 Score=50.61 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.3
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999986
No 475
>PRK06184 hypothetical protein; Provisional
Probab=94.76 E-value=0.03 Score=52.30 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=31.5
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999987
No 476
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.76 E-value=0.045 Score=47.47 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
+|+|||+|..|...|..|.+.|.+|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999843
No 477
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.75 E-value=0.041 Score=51.21 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=31.4
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+++|||+|..|+-+|..|++.|.+|++++|.+
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 589999999999999999999999999999876
No 478
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.74 E-value=0.053 Score=47.70 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=30.9
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.|||+|..|...|..|.+.|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 489999999999999999999999999999864
No 479
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.74 E-value=0.029 Score=52.66 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=27.9
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
|+|+|||+|.+|+-.+..|.+.|.+++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 799999999999999999999999999999986
No 480
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.72 E-value=0.033 Score=50.41 Aligned_cols=32 Identities=41% Similarity=0.539 Sum_probs=30.6
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|+.|.-+|..|++.|.+|.+++|.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999976
No 481
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.71 E-value=0.042 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
...+|+|+|+|++|+.++..++..|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999875
No 482
>PRK08244 hypothetical protein; Provisional
Probab=94.70 E-value=0.031 Score=52.08 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=31.3
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999987
No 483
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.70 E-value=0.03 Score=50.27 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=30.4
Q ss_pred eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~ 219 (303)
.|+|||+|.+|+-+|..|++.| .+|++++|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999986
No 484
>PRK04148 hypothetical protein; Provisional
Probab=94.69 E-value=0.032 Score=41.84 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~~ 41 (303)
..++++||.| .|...|..|.+.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3579999999 999999999999999999998764
No 485
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.69 E-value=0.036 Score=46.82 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=31.9
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.-.|+|||+|.+|+-+|..+++.|.+|.+++|.+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999986
No 486
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.66 E-value=0.033 Score=50.10 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=31.3
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 479999999999999999999999999999987
No 487
>PRK06185 hypothetical protein; Provisional
Probab=94.64 E-value=0.034 Score=50.37 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999999986
No 488
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.63 E-value=0.029 Score=50.88 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=31.1
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 379999999999999999999999999999986
No 489
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.63 E-value=0.035 Score=50.45 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=30.1
Q ss_pred eEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 68999999999999999999999999999974
No 490
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.63 E-value=0.052 Score=47.13 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHhhCCCCeEEEec
Q 022090 9 EVIMVGAGTSGLATAACLSLQSIPYVILER 38 (303)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~iie~ 38 (303)
+|+|||+|..|...|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 491
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.63 E-value=0.036 Score=47.31 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+.+|+|||+|.+|..+|+-+.-.|.+|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 35689999999999999999999999999999873
No 492
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.62 E-value=0.033 Score=50.09 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.9
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
.+|+|||+|..|.-+|..|++.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999875
No 493
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.62 E-value=0.034 Score=53.37 Aligned_cols=33 Identities=42% Similarity=0.635 Sum_probs=31.1
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||+|.+|+-+|.+|+.+|.+|+++++.+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 579999999999999999999999999999875
No 494
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.61 E-value=0.035 Score=51.93 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=31.3
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||||.+|+-+|.+|+.+|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999986
No 495
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.61 E-value=0.057 Score=43.82 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCcEEEECCcHHHHHHHHHHhhCCC-CeEEEecCC
Q 022090 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (303)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~iie~~~ 40 (303)
..+|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 699999873
No 496
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.59 E-value=0.036 Score=50.39 Aligned_cols=32 Identities=31% Similarity=0.653 Sum_probs=30.1
Q ss_pred eEEEECCCccHHHHHHHHhhcc-CceEEEeecC
Q 022090 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (303)
Q Consensus 188 ~v~ViG~G~~g~e~a~~l~~~g-~~vt~~~r~~ 219 (303)
+|+|||+|..|+-+|..|++.| .+|++++|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999998 4999999987
No 497
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.58 E-value=0.04 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 186 ~~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
..+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999999999998765
No 498
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.58 E-value=0.035 Score=52.48 Aligned_cols=33 Identities=42% Similarity=0.559 Sum_probs=30.8
Q ss_pred CeEEEECCCccHHHHHHHHhhccCceEEEeecC
Q 022090 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (303)
Q Consensus 187 ~~v~ViG~G~~g~e~a~~l~~~g~~vt~~~r~~ 219 (303)
-.|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 479999999999999999999999999999874
No 499
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.58 E-value=0.059 Score=47.01 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999765
No 500
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.57 E-value=0.059 Score=46.88 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.8
Q ss_pred CcEEEECCcHHHHHHHHHHhhCCCCeEEEecCC
Q 022090 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (303)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~iie~~~ 40 (303)
.+|+|||+|..|...|..|.+.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999963
Done!