BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022092
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W9D|L Chain L, Structure Of Fab Fragment Of The Icsm 18 - Anti-Prp
           Therapeutic Antibody   At 1.57 A Resolution
          Length = 212

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 173 AAVKRERAMAYAFSHQWRANPNPLG---KYELGKAD 205
           ++++ E A  Y F HQWR+NP   G   K E+ +AD
Sbjct: 75  SSMEAEDAATY-FCHQWRSNPYTFGGGTKLEIKRAD 109


>pdb|2W9E|L Chain L, Structure Of Icsm 18 (Anti-Prp Therapeutic Antibody) Fab
           Fragment Complexed With Human Prp Fragment 119-231
          Length = 212

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 173 AAVKRERAMAYAFSHQWRANPNPLG---KYELGKAD 205
           ++++ E A  Y F HQWR+NP   G   K E+ +AD
Sbjct: 75  SSMEAEDAATY-FCHQWRSNPYTFGGGTKLEIKRAD 109


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 48  FAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRR-LKGTIRLQGVSQRHSVQKQATTTLS 106
           + + +   M + +  +I IQ   R + AR  + R LK  + LQ   +R   +++      
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE------ 905

Query: 107 YLHTWSKLQAEIRA----RRLCMVKEGRLRQ--KKLENQLK----LDAKLNSLEIDWSGG 156
                 KL+ E R+    ++L +  E ++ Q  +K++ Q K    L  K+N+LEI +S  
Sbjct: 906 ----LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 157 PETMEEILSRINQREKAA 174
            E +   + R+   E+ A
Sbjct: 962 TEKLRSDVERLRMSEEEA 979


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,317,827
Number of Sequences: 62578
Number of extensions: 252921
Number of successful extensions: 599
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)