Query 022092
Match_columns 302
No_of_seqs 217 out of 584
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.1 4.3E-06 9.2E-11 50.2 3.2 21 60-80 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.6 0.00014 3E-09 78.3 7.9 65 57-125 670-735 (862)
3 smart00015 IQ Short calmodulin 97.6 6.6E-05 1.4E-09 47.1 3.0 22 59-80 2-23 (26)
4 KOG0520 Uncharacterized conser 96.9 0.0021 4.6E-08 70.0 7.3 72 58-129 808-887 (975)
5 KOG0160 Myosin class V heavy c 96.6 0.0057 1.2E-07 66.3 7.8 66 57-125 693-758 (862)
6 PTZ00014 myosin-A; Provisional 96.3 0.0044 9.6E-08 66.9 5.1 41 61-101 778-819 (821)
7 PF00612 IQ: IQ calmodulin-bin 94.3 0.044 9.5E-07 32.7 2.4 19 83-101 2-20 (21)
8 COG5022 Myosin heavy chain [Cy 94.1 0.088 1.9E-06 59.7 6.2 44 58-101 743-787 (1463)
9 KOG0164 Myosin class I heavy c 93.7 0.16 3.5E-06 54.6 6.7 54 60-124 696-750 (1001)
10 KOG2128 Ras GTPase-activating 93.0 0.21 4.5E-06 56.6 6.7 67 59-125 564-639 (1401)
11 smart00015 IQ Short calmodulin 90.9 0.2 4.4E-06 31.1 2.2 19 83-101 4-22 (26)
12 KOG0520 Uncharacterized conser 89.8 0.3 6.6E-06 53.8 3.7 64 61-124 834-930 (975)
13 PTZ00014 myosin-A; Provisional 87.3 1.3 2.8E-05 48.4 6.5 39 84-125 779-817 (821)
14 KOG4427 E3 ubiquitin protein l 83.1 1.1 2.3E-05 48.9 3.3 24 57-80 27-50 (1096)
15 KOG0942 E3 ubiquitin protein l 75.0 1.7 3.8E-05 47.9 2.0 26 57-82 26-51 (1001)
16 KOG2128 Ras GTPase-activating 73.8 5.2 0.00011 46.0 5.3 60 65-127 540-611 (1401)
17 KOG0161 Myosin class II heavy 66.1 8.4 0.00018 45.9 5.0 35 87-121 778-812 (1930)
18 KOG0377 Protein serine/threoni 65.3 7.5 0.00016 40.4 4.0 35 57-91 14-48 (631)
19 KOG0162 Myosin class I heavy c 65.0 5.3 0.00011 43.7 2.9 23 61-83 697-719 (1106)
20 KOG0163 Myosin class VI heavy 64.3 8.1 0.00018 42.6 4.1 28 59-86 812-840 (1259)
21 KOG0161 Myosin class II heavy 61.9 8.6 0.00019 45.9 4.1 41 60-100 773-817 (1930)
22 PF08763 Ca_chan_IQ: Voltage g 55.3 14 0.00031 25.4 2.7 20 60-79 9-28 (35)
23 COG5022 Myosin heavy chain [Cy 47.8 98 0.0021 36.4 9.2 29 61-89 794-823 (1463)
24 PF15157 IQ-like: IQ-like 37.3 30 0.00065 28.5 2.5 22 59-80 46-67 (97)
25 KOG0165 Microtubule-associated 35.6 52 0.0011 36.5 4.6 23 58-80 941-963 (1023)
26 PF09692 Arb1: Argonaute siRNA 34.9 49 0.0011 33.6 4.1 22 64-85 47-68 (396)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.07 E-value=4.3e-06 Score=50.19 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHh
Q 022092 60 DVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr 80 (302)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999885
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.62 E-value=0.00014 Score=78.32 Aligned_cols=65 Identities=28% Similarity=0.245 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022092 57 PVEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
.....+++.||..||||+.|+.|..++ +++.+|+++||.++|+. .+ ...+++.||..+|+...|+
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHH
Confidence 345668888999999999999999775 77889999999999981 12 3445555666655555544
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.59 E-value=6.6e-05 Score=47.05 Aligned_cols=22 Identities=50% Similarity=0.662 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHh
Q 022092 59 EDVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 59 ee~AAV~IQsafRGylARr~lr 80 (302)
.+.||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 4
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.90 E-value=0.0021 Score=70.01 Aligned_cols=72 Identities=25% Similarity=0.342 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhh-hhhhhhhhhhhhHHHHHHHhhhh-------HHHHHHHHHHHHHHHHhhhhhhh
Q 022092 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLS-------YLHTWSKLQAEIRARRLCMVKEG 129 (302)
Q Consensus 58 ree~AAV~IQsafRGylARr~lr~LK-giVrLQAlvRG~~VRrQa~~tlr-------~~~A~vrIQa~iRarr~R~s~eg 129 (302)
.-..||..||.-||||+.|+.|..++ -+|++|+.+||+.||++|..... ..-+|-++|+-+|++..+...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34569999999999999999999776 79999999999999999973222 24578889999999988876654
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.61 E-value=0.0057 Score=66.28 Aligned_cols=66 Identities=20% Similarity=0.092 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022092 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr~LKgiVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
+....+++.||+.+||+++|+....-...+.+|..+|++..|+++... ..+++.+|+.+|+..+|.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 466789999999999999998333335778999999999999999554 789999999999999987
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.34 E-value=0.0044 Score=66.92 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhHHHHHHHhhh-hhhhhhhhhhhhhHHHHHH
Q 022092 61 VAAIRIQTAFRAYKARKTFRRL-KGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~L-KgiVrLQAlvRG~~VRrQa 101 (302)
..|+.||+++|||++|+.|..+ .+++++|+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999999999999965 5889999999999998753
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.26 E-value=0.044 Score=32.66 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhhHHHHHH
Q 022092 83 KGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 83 KgiVrLQAlvRG~~VRrQa 101 (302)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999876
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.12 E-value=0.088 Score=59.74 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHh-hhhhhhhhhhhhhhhHHHHHH
Q 022092 58 VEDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 58 ree~AAV~IQsafRGylARr~lr-~LKgiVrLQAlvRG~~VRrQa 101 (302)
.-...|++||++|||++.|++|. +++.+..+|.+.+|..+|+.+
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 34578999999999999999988 566665556666655555444
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=93.65 E-value=0.16 Score=54.62 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhhh-hhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 022092 60 DVAAIRIQTAFRAYKARKTFRRLKGTI-RLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~LKgiV-rLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R 124 (302)
-.-|+.||.+|||+++|..|+.++.+. -++ ..|.+-++ ..+-.||.++|+.+.+
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~ 750 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQM 750 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhc
Confidence 357899999999999999999988544 334 55544433 2344578888886654
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.02 E-value=0.21 Score=56.62 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhhHHH---HHHHh--hhhhhhhhhhhhhhhHHHHHHHhhhh----HHHHHHHHHHHHHHHHhhh
Q 022092 59 EDVAAIRIQTAFRAYKA---RKTFR--RLKGTIRLQGVSQRHSVQKQATTTLS----YLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 59 ee~AAV~IQsafRGylA---Rr~lr--~LKgiVrLQAlvRG~~VRrQa~~tlr----~~~A~vrIQa~iRarr~R~ 125 (302)
.....+.||+++|||+. +..+. ..+.+|.+|++.||+++|+.+...+. |+.+.+.||+.+|++..|.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 56678999999999994 22222 45679999999999999999874443 6889999999999988764
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=90.92 E-value=0.2 Score=31.11 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhHHHHHH
Q 022092 83 KGTIRLQGVSQRHSVQKQA 101 (302)
Q Consensus 83 KgiVrLQAlvRG~~VRrQa 101 (302)
+.++.||+.+||+++|+.+
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4688899999999999887
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=89.78 E-value=0.3 Score=53.83 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhHHHHHHHhhh-h--hhh--------hhhhhhhhhHHHHHHH----------------------hhhhH
Q 022092 61 VAAIRIQTAFRAYKARKTFRRL-K--GTI--------RLQGVSQRHSVQKQAT----------------------TTLSY 107 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~L-K--giV--------rLQAlvRG~~VRrQa~----------------------~tlr~ 107 (302)
.=+|+||+++|||-.|+.|+.+ . ++. ++|+-.||+..|+-+. ...+.
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999944 2 221 3688888887775443 11223
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022092 108 LHTWSKLQAEIRARRLC 124 (302)
Q Consensus 108 ~~A~vrIQa~iRarr~R 124 (302)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 56899999999987766
No 13
>PTZ00014 myosin-A; Provisional
Probab=87.35 E-value=1.3 Score=48.38 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=33.0
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 022092 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (302)
Q Consensus 84 giVrLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRarr~R~ 125 (302)
-++.||+.+||+++|+.+.. ..++++.||+.+|++..++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 35578999999999999944 4789999999999988764
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=1.1 Score=48.90 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHh
Q 022092 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr 80 (302)
.+.+.||+.||..+|||++|+.|+
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999987
No 15
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.02 E-value=1.7 Score=47.87 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHhhh
Q 022092 57 PVEDVAAIRIQTAFRAYKARKTFRRL 82 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr~L 82 (302)
.++|.+||.||+.+|||++|+..+.+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999987744
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=73.78 E-value=5.2 Score=46.00 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHhhhHHHHHHHhhhhh--------hhhhhhhhhhhHHHHHHHhh-hhH---HHHHHHHHHHHHHHHhhhhh
Q 022092 65 RIQTAFRAYKARKTFRRLKG--------TIRLQGVSQRHSVQKQATTT-LSY---LHTWSKLQAEIRARRLCMVK 127 (302)
Q Consensus 65 ~IQsafRGylARr~lr~LKg--------iVrLQAlvRG~~VRrQa~~t-lr~---~~A~vrIQa~iRarr~R~s~ 127 (302)
+||+..|||..|-.++.... ++-+|+++||.++ +... ..| ..-++.+|+..|+..+|...
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 44999999999998885433 5568999999997 3222 222 34689999999999887653
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.06 E-value=8.4 Score=45.95 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=19.5
Q ss_pred hhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 022092 87 RLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121 (302)
Q Consensus 87 rLQAlvRG~~VRrQa~~tlr~~~A~vrIQa~iRar 121 (302)
.|||.|||+++|+.+...+..+.++..||.-+|..
T Consensus 778 ~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 778 LFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=65.33 E-value=7.5 Score=40.42 Aligned_cols=35 Identities=34% Similarity=0.246 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhh
Q 022092 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGV 91 (302)
Q Consensus 57 ~ree~AAV~IQsafRGylARr~lr~LKgiVrLQAl 91 (302)
.+.-.||+.||.-||+|.||...+..=...-+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 45578999999999999999887755455555554
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=65.00 E-value=5.3 Score=43.72 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhh
Q 022092 61 VAAIRIQTAFRAYKARKTFRRLK 83 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~LK 83 (302)
-=|.+||.|||.|++||.|-.||
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999887
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.27 E-value=8.1 Score=42.57 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhhhHHHHHHHh-hhhhhh
Q 022092 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTI 86 (302)
Q Consensus 59 ee~AAV~IQsafRGylARr~lr-~LKgiV 86 (302)
...+++++|+..||||+|++++ .+.+++
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~ 840 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIR 840 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 4568899999999999999998 455544
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.95 E-value=8.6 Score=45.87 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhh----hhhhhhhhhhhhhHHHHH
Q 022092 60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQ 100 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~lr~L----KgiVrLQAlvRG~~VRrQ 100 (302)
..-.+.+|+++||||+|+.|... .++..||.=+|-+...+.
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678899999999999999833 467778887777655544
No 22
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=55.32 E-value=14 Score=25.41 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 022092 60 DVAAIRIQTAFRAYKARKTF 79 (302)
Q Consensus 60 e~AAV~IQsafRGylARr~l 79 (302)
--||..||-.||-|.+|+.-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999863
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=47.81 E-value=98 Score=36.43 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhh-hhhhhhhh
Q 022092 61 VAAIRIQTAFRAYKARKTFRR-LKGTIRLQ 89 (302)
Q Consensus 61 ~AAV~IQsafRGylARr~lr~-LKgiVrLQ 89 (302)
.++++||..+|.+.-|..|+. +..+..||
T Consensus 794 ~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred HhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444442 23344444
No 24
>PF15157 IQ-like: IQ-like
Probab=37.32 E-value=30 Score=28.54 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHh
Q 022092 59 EDVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 59 ee~AAV~IQsafRGylARr~lr 80 (302)
-|.-+..||.+||-|++|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 4666889999999999997744
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=35.61 E-value=52 Score=36.54 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHh
Q 022092 58 VEDVAAIRIQTAFRAYKARKTFR 80 (302)
Q Consensus 58 ree~AAV~IQsafRGylARr~lr 80 (302)
..-.||+.||.+.|||.+|+.|+
T Consensus 941 nkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999988
No 26
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=34.86 E-value=49 Score=33.61 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.2
Q ss_pred HHHHHHhhhHHHHHHHhhhhhh
Q 022092 64 IRIQTAFRAYKARKTFRRLKGT 85 (302)
Q Consensus 64 V~IQsafRGylARr~lr~LKgi 85 (302)
-+||.++-.|.+||++...|..
T Consensus 47 ~RiE~~IQRyr~rRRl~~~R~~ 68 (396)
T PF09692_consen 47 ERIEECIQRYRARRRLDSERRQ 68 (396)
T ss_pred HHHHHHHHHHHHhcCCChHHHH
Confidence 3999999999999998865543
Done!