Query 022093
Match_columns 302
No_of_seqs 215 out of 961
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 4.3E-64 9.3E-69 465.3 22.6 255 38-302 10-298 (302)
2 COG5539 Predicted cysteine pro 100.0 4.4E-31 9.6E-36 244.7 7.6 251 36-300 7-305 (306)
3 PF02338 OTU: OTU-like cystein 99.8 2.6E-21 5.6E-26 158.3 5.4 102 192-296 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.5 9.4E-15 2E-19 134.3 4.7 103 186-300 110-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.3 1.1E-12 2.4E-17 120.7 5.8 80 215-301 157-244 (244)
6 KOG3991 Uncharacterized conser 99.2 2.8E-11 6.2E-16 110.0 5.5 78 215-302 174-256 (256)
7 KOG2605 OTU (ovarian tumor)-li 99.1 2.8E-11 6.2E-16 117.9 2.3 117 175-301 207-343 (371)
8 COG5539 Predicted cysteine pro 97.6 1.4E-05 3.1E-10 75.3 -0.0 98 190-300 116-230 (306)
9 PF05415 Peptidase_C36: Beet n 84.7 0.87 1.9E-05 36.5 2.7 59 191-257 3-69 (104)
10 PF14282 FlxA: FlxA-like prote 81.8 15 0.00033 29.8 9.1 62 42-104 17-78 (106)
11 PF04645 DUF603: Protein of un 69.5 14 0.0003 33.1 5.9 45 46-97 107-151 (181)
12 PF05412 Peptidase_C33: Equine 69.5 5.2 0.00011 33.0 3.1 58 191-256 4-61 (108)
13 PRK09784 hypothetical protein; 58.9 5.4 0.00012 37.8 1.6 24 181-204 195-218 (417)
14 PF08232 Striatin: Striatin fa 54.7 35 0.00075 29.0 5.7 44 51-99 25-68 (134)
15 PF06657 Cep57_MT_bd: Centroso 54.0 67 0.0015 24.9 6.7 45 47-98 27-71 (79)
16 PF07851 TMPIT: TMPIT-like pro 50.1 34 0.00075 33.5 5.5 41 46-97 41-81 (330)
17 PF05529 Bap31: B-cell recepto 49.4 50 0.0011 29.1 6.1 54 51-105 125-181 (192)
18 PF12999 PRKCSH-like: Glucosid 45.5 48 0.001 29.7 5.3 52 43-98 120-174 (176)
19 PRK11546 zraP zinc resistance 44.3 1.1E+02 0.0023 26.6 7.1 60 35-98 45-110 (143)
20 PF06785 UPF0242: Uncharacteri 41.5 71 0.0015 31.6 6.1 50 42-103 132-183 (401)
21 PF05104 Rib_recp_KP_reg: Ribo 40.3 14 0.00031 32.1 1.1 19 39-57 3-21 (151)
22 PF05381 Peptidase_C21: Tymovi 40.0 1.7E+02 0.0037 24.1 7.2 85 193-298 1-94 (104)
23 PRK10803 tol-pal system protei 38.2 75 0.0016 29.8 5.7 51 33-95 36-86 (263)
24 KOG4364 Chromatin assembly fac 37.5 2.1E+02 0.0046 30.9 9.2 18 87-104 295-312 (811)
25 PF04420 CHD5: CHD5-like prote 36.9 1.4E+02 0.003 26.0 6.8 55 48-102 37-91 (161)
26 PF08581 Tup_N: Tup N-terminal 34.6 1.4E+02 0.0031 23.2 5.8 43 46-96 34-76 (79)
27 PF02388 FemAB: FemAB family; 33.8 1.4E+02 0.003 29.7 7.1 51 43-95 241-291 (406)
28 TIGR02338 gimC_beta prefoldin, 33.5 1.7E+02 0.0037 23.6 6.5 44 40-95 63-106 (110)
29 PF02403 Seryl_tRNA_N: Seryl-t 33.0 1.7E+02 0.0036 23.2 6.3 21 75-95 72-92 (108)
30 PF10779 XhlA: Haemolysin XhlA 32.0 1.3E+02 0.0027 22.6 5.0 46 43-93 5-50 (71)
31 TIGR00513 accA acetyl-CoA carb 32.0 88 0.0019 30.5 5.2 42 49-98 8-49 (316)
32 PF06858 NOG1: Nucleolar GTP-b 31.9 54 0.0012 24.2 2.9 36 172-208 2-37 (58)
33 PRK05724 acetyl-CoA carboxylas 30.4 90 0.0019 30.5 5.0 42 49-98 8-49 (319)
34 PF05159 Capsule_synth: Capsul 29.9 1.1E+02 0.0024 28.1 5.3 56 235-301 5-64 (269)
35 cd00632 Prefoldin_beta Prefold 29.5 2.1E+02 0.0046 22.7 6.3 45 40-96 59-103 (105)
36 KOG2605 OTU (ovarian tumor)-li 28.8 28 0.0006 34.7 1.2 46 216-261 3-48 (371)
37 PF13801 Metal_resist: Heavy-m 28.7 2.7E+02 0.0059 21.3 7.7 66 35-104 43-114 (125)
38 COG3426 Butyrate kinase [Energ 28.5 51 0.0011 32.2 2.8 78 171-248 233-341 (358)
39 PF05667 DUF812: Protein of un 28.0 1.8E+02 0.0039 30.9 7.0 56 11-68 290-345 (594)
40 PF14335 DUF4391: Domain of un 28.0 79 0.0017 28.7 4.0 49 41-93 173-221 (221)
41 PF06810 Phage_GP20: Phage min 27.7 1.7E+02 0.0038 25.3 5.8 47 50-105 33-82 (155)
42 PF09304 Cortex-I_coil: Cortex 27.5 3E+02 0.0066 22.8 6.8 47 41-96 31-77 (107)
43 PF10224 DUF2205: Predicted co 27.0 2.1E+02 0.0046 22.4 5.6 35 46-92 18-52 (80)
44 PLN03230 acetyl-coenzyme A car 26.8 1.2E+02 0.0025 31.0 5.2 42 49-98 78-119 (431)
45 PF01920 Prefoldin_2: Prefoldi 26.7 2.6E+02 0.0056 21.5 6.3 44 40-95 58-101 (106)
46 CHL00198 accA acetyl-CoA carbo 26.4 1.2E+02 0.0026 29.7 5.0 43 49-99 11-53 (322)
47 smart00718 DM4_12 DM4/DM12 fam 26.3 59 0.0013 25.9 2.5 31 170-207 6-37 (95)
48 PF02996 Prefoldin: Prefoldin 26.3 2.1E+02 0.0045 22.8 5.8 48 39-98 72-119 (120)
49 COG0825 AccA Acetyl-CoA carbox 25.9 1.1E+02 0.0025 29.7 4.7 46 49-102 7-52 (317)
50 PRK11020 hypothetical protein; 25.5 2E+02 0.0043 24.2 5.4 22 44-65 31-52 (118)
51 COG2825 HlpA Outer membrane pr 24.8 4.2E+02 0.0092 23.3 7.9 34 36-69 43-76 (170)
52 PF15619 Lebercilin: Ciliary p 24.4 2.8E+02 0.0061 25.0 6.7 50 40-94 57-106 (194)
53 COG5481 Uncharacterized conser 24.1 3.1E+02 0.0068 20.5 6.0 49 43-93 10-61 (67)
54 KOG1962 B-cell receptor-associ 23.6 1.5E+02 0.0033 27.5 4.9 48 33-92 154-201 (216)
55 KOG3612 PHD Zn-finger protein 23.4 2.2E+02 0.0047 30.0 6.4 50 43-103 470-523 (588)
56 KOG2264 Exostosin EXT1L [Signa 23.4 1.7E+02 0.0036 31.3 5.6 54 15-68 55-110 (907)
57 KOG4809 Rab6 GTPase-interactin 23.0 1.8E+02 0.004 30.7 5.8 24 82-105 392-415 (654)
58 KOG1265 Phospholipase C [Lipid 22.2 3.4E+02 0.0074 30.5 7.8 27 43-69 1081-1107(1189)
59 KOG0642 Cell-cycle nuclear pro 21.9 1E+02 0.0022 32.4 3.7 52 43-99 33-84 (577)
60 PF15261 DUF4591: Domain of un 21.4 1.1E+02 0.0023 26.2 3.3 19 40-58 109-127 (134)
61 KOG2223 Uncharacterized conser 21.4 1.8E+02 0.0038 30.1 5.2 34 46-86 231-264 (586)
62 PF07106 TBPIP: Tat binding pr 20.8 4.1E+02 0.0089 22.8 7.0 47 46-95 88-134 (169)
63 PF01381 HTH_3: Helix-turn-hel 20.1 1.3E+02 0.0028 20.3 3.0 30 224-253 23-52 (55)
64 KOG4015 Fatty acid-binding pro 20.0 2E+02 0.0044 24.6 4.7 39 220-265 14-52 (133)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-64 Score=465.26 Aligned_cols=255 Identities=43% Similarity=0.728 Sum_probs=213.7
Q ss_pred ccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCC-CC
Q 022093 38 KQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN-GNE-KS 115 (302)
Q Consensus 38 ~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~-~~~-~~ 115 (302)
..+++++|++|||+|+|+||++||+|||+++||+| ++||+++++|++||.+|.+||.+||..+...... ..+ +.
T Consensus 10 ~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~ 85 (302)
T KOG2606|consen 10 DEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKEN 85 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCcccc
Confidence 34556999999999999999999999999999996 8899999999999999999999999999853321 111 22
Q ss_pred cchhhhhhhcccccccccCCCCCcchhhhHHHHHHHHHHHH-HHHHHHHh--ccCCCchhHHHHHHHHhccCCceEeeeC
Q 022093 116 NLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQS--NIVSDRTVEDEKLEKKLGPLGLTVNDIK 192 (302)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~Ka~~Rr~kr~a~~~~r~-eri~~e~~--~~~~~r~~E~~~l~~~L~~~gL~i~~Ip 192 (302)
..++++..++.+...+.++.|+.+|++|||.+++..++.++ ++|.++++ +.++.+..|.+.+.+.|...||.+++||
T Consensus 86 ~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip 165 (302)
T KOG2606|consen 86 LIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIP 165 (302)
T ss_pred chhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCC
Confidence 24555555666666665555667887777776665555555 78876544 7889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHHH
Q 022093 193 PDGHCLYRAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELELR 243 (302)
Q Consensus 193 ~DGnCLFrAIadQL~~~~~~-~------------------~fd~~~----------~~~feeY~~~m~~t~~WGG~lEL~ 243 (302)
+||||||+||+|||..++.. . +|-+|+ ..+|+.||+.|++|+.|||+|||.
T Consensus 166 ~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~ 245 (302)
T KOG2606|consen 166 ADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELK 245 (302)
T ss_pred CCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHH
Confidence 99999999999999987654 1 155543 357999999999999999999999
Q ss_pred HHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccCC
Q 022093 244 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 302 (302)
Q Consensus 244 ALS~~l~v~I~V~q~~~~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p~ 302 (302)
|||++|++||+||+.++|++.||++|.. .+||.|+||+|+||||+|||||.|.
T Consensus 246 AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 246 ALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred HHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 9999999999999999999999999862 5899999999999999999999873
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-31 Score=244.72 Aligned_cols=251 Identities=19% Similarity=0.158 Sum_probs=195.0
Q ss_pred cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 022093 36 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK 114 (302)
Q Consensus 36 ~~~~e~-~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~~~~~ 114 (302)
+..-+| |+.++.+||.|.++||.+||.++|+++.|.+ +.| |+..|..|+..|.++|+-|+..+.....+.++.
T Consensus 7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea 80 (306)
T COG5539 7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA 80 (306)
T ss_pred ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence 344455 8999999999999999999999999998875 322 999999999999999999999886433222221
Q ss_pred Ccchhhhh--hhc------------cccccccc-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHhcc----CCCchhHHH
Q 022093 115 SNLDNLVK--AVA------------GVTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE 175 (302)
Q Consensus 115 ~~~~~~~~--~~~------------~~~~~~~~-~~~~~~Ka~~Rr~kr~a~~~~r~eri~~e~~~~----~~~r~~E~~ 175 (302)
++.+++.+ ..+ +....... .+....+.++||++|..++.+....+++.++.+ +.-...++.
T Consensus 81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~ 160 (306)
T COG5539 81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL 160 (306)
T ss_pred CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence 12121111 100 11111111 233456999999999999998888777766554 444777888
Q ss_pred HHHHHhccCCceEeeeCCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHH
Q 022093 176 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYC 227 (302)
Q Consensus 176 ~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~-------------~-------------fd~~~--~~~feeY~ 227 (302)
.+...+..-++.-.+++|||+|+|.+|+|||..+.... . ||+.+ ...|++||
T Consensus 161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ 240 (306)
T COG5539 161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYV 240 (306)
T ss_pred CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHH
Confidence 88999999999999999999999999999998764321 0 55544 46899999
Q ss_pred HHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093 228 KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 300 (302)
Q Consensus 228 ~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~ 300 (302)
+.|..++.||+.+|++|||+.|++|+.++...+|.+.+++- +.+..+-+.|++|+|++| ||||+.
T Consensus 241 ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 241 NEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred hhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence 99999999999999999999999999999999998877642 235668899999999999 999975
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.83 E-value=2.6e-21 Score=158.27 Aligned_cols=102 Identities=35% Similarity=0.652 Sum_probs=73.6
Q ss_pred CCCCchHHHHHHHHHh----cCCCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 022093 192 KPDGHCLYRAVEDQLA----HLSGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY 256 (302)
Q Consensus 192 p~DGnCLFrAIadQL~----~~~~~~~--------fd~-~~~~~feeY~~--~m~~t~~WGG~lEL~ALS~~l~v~I~V~ 256 (302)
|||||||||||++||+ +....+. +-. .-.+.|..|+. +|+++++|||++||.|||++|+++|.||
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~ 80 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY 80 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence 7999999999999999 4333221 111 11134455544 5899999999999999999999999999
Q ss_pred eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 022093 257 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 296 (302)
Q Consensus 257 q~~~~~~~----ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHY 296 (302)
+...+... +...+. .....++|+|+|+.|.|..|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 81 SSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp CETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred EcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence 87554422 222111 23457899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.4e-15 Score=134.27 Aligned_cols=103 Identities=19% Similarity=0.394 Sum_probs=83.0
Q ss_pred ceEeeeCCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHHH
Q 022093 186 LTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALTH 247 (302)
Q Consensus 186 L~i~~Ip~DGnCLFrAIadQL~~~~~~~~-----------------fd~-~~~~~feeY~~~m~~t~~WGG~lEL~ALS~ 247 (302)
|..+.||.|..|||+||+.-++..-.... |.+ +++..-.+||.+|.+...|||.|||..||+
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~ 189 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD 189 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence 66789999999999999999887544321 333 246788999999999999999999999999
Q ss_pred hhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093 248 CLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 300 (302)
Q Consensus 248 ~l~v~I~V~q~~~~~~-~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~ 300 (302)
.|+|.|.||+.....+ .||++- .....+.|.|. |.|||++.
T Consensus 190 ~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 190 YYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred hhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence 9999999999876544 466431 23568999998 89999874
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.34 E-value=1.1e-12 Score=120.71 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=52.4
Q ss_pred cchhhh----HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEec-CCcCCCCCCCCCCeEEEEec
Q 022093 215 SAQSQV----ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMG-KEYSNGGSDSSGSSIILSYH 286 (302)
Q Consensus 215 fd~~~~----~~feeY~~~-m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~--~~~ig-~e~~~~~~~~~~~~I~L~Y~ 286 (302)
|.+|+. .+|++||.. |...+.-++|+.|.|||++|+++|.|+-.++. ...+. ..|..+ +....+.|+|.|.
T Consensus 157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~-~~~~~~~i~LLyr 235 (244)
T PF10275_consen 157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPD-NESQEPQITLLYR 235 (244)
T ss_dssp HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-S-STTSS-SEEEEEE
T ss_pred HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCc-cCCCCCEEEEEEc
Confidence 455654 679999975 89899999999999999999999999887754 11011 112100 1235789999999
Q ss_pred cCCCCCCCccccccC
Q 022093 287 RHAFGLGEHYNSVIP 301 (302)
Q Consensus 287 ~h~ygLGeHYnSl~p 301 (302)
+ .|||-++|
T Consensus 236 p------gHYdIly~ 244 (244)
T PF10275_consen 236 P------GHYDILYP 244 (244)
T ss_dssp T------BEEEEEEE
T ss_pred C------CccccccC
Confidence 6 59999987
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.8e-11 Score=109.98 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=59.4
Q ss_pred cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-Eec-CCcCCCCCCCCCCeEEEEeccCC
Q 022093 215 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMG-KEYSNGGSDSSGSSIILSYHRHA 289 (302)
Q Consensus 215 fd~~~~--~~feeY~~~-m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~-~ig-~e~~~~~~~~~~~~I~L~Y~~h~ 289 (302)
|.+|++ .+...||.. |+-.+.-.|||+|.|||+++++.|.|.-.+...- ..+ ..|. ..+.|.|.|.|..
T Consensus 174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp-- 247 (256)
T KOG3991|consen 174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP-- 247 (256)
T ss_pred hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence 566664 588999996 7777778999999999999999999977654221 222 2332 3567899999985
Q ss_pred CCCCCccccccCC
Q 022093 290 FGLGEHYNSVIPI 302 (302)
Q Consensus 290 ygLGeHYnSl~p~ 302 (302)
.|||-++|.
T Consensus 248 ----GHYdilY~~ 256 (256)
T KOG3991|consen 248 ----GHYDILYKK 256 (256)
T ss_pred ----CccccccCC
Confidence 799999983
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.8e-11 Score=117.93 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=85.4
Q ss_pred HHHHHHhccCCceEeeeCCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHHHHHHhhcCCccCc
Q 022093 175 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFENYCKEVESTAAWGG 238 (302)
Q Consensus 175 ~~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~~~~~~----------------~fd~~~~~~feeY~~~m~~t~~WGG 238 (302)
......+...|+.++.|..||+|+|||++||+++....+ .|..|+.++|..|+..++..+.||.
T Consensus 207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gn 286 (371)
T KOG2605|consen 207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGN 286 (371)
T ss_pred HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcc
Confidence 344455578899999999999999999999999965433 1777888999999999999999999
Q ss_pred HHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccC
Q 022093 239 ELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 301 (302)
Q Consensus 239 ~lEL~ALS~---~l~v~I~V~q~~~~~~~-ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p 301 (302)
++|++|+|. ....++.|.+...+.++ +.+.+. .....+++. |..-.||+++++
T Consensus 287 hie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h~~~~~~ 343 (371)
T KOG2605|consen 287 HIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVHYNTARH 343 (371)
T ss_pred hHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhhhhhccc
Confidence 999999996 44556666666655553 222211 112223333 334699998875
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.4e-05 Score=75.34 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=71.6
Q ss_pred eeCCCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccE
Q 022093 190 DIKPDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHI 253 (302)
Q Consensus 190 ~Ip~DGnCLFrAIadQL~~~~~~--------------~~fd~~~-~~~feeY~~~m~~t~~WG-G~lEL~ALS~~l~v~I 253 (302)
...+|..|+|+|++.-|+..... ..|.+.+ +.+--.||.++.....|| |.+||.+||+.|++.|
T Consensus 116 p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i 195 (306)
T COG5539 116 PGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRI 195 (306)
T ss_pred CCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceee
Confidence 33468899999999888763211 1154443 457789999999999999 9999999999999999
Q ss_pred EEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022093 254 MIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 300 (302)
Q Consensus 254 ~V~q~~~~~~-~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~ 300 (302)
+|+..+.... .+++. .....+.+.|. |.|||+..
T Consensus 196 ~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 196 HVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred eeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 9999885433 33321 12345677777 78999753
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=84.66 E-value=0.87 Score=36.54 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=45.3
Q ss_pred eCCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEEe
Q 022093 191 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIYS 257 (302)
Q Consensus 191 Ip~DGnCLFrAIadQL~~~~~~~~fd~~---~---~~~feeY~~~m~--~t~~WGG~lEL~ALS~~l~v~I~V~q 257 (302)
|..|.|||.-||+..|... |+-. + ..++..||..++ ++.+|-+ -+.+|+.++|.|.|--
T Consensus 3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVKV 69 (104)
T ss_pred ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEEE
Confidence 5679999999999999653 4332 1 257899999876 4778976 5689999999998733
No 10
>PF14282 FlxA: FlxA-like protein
Probab=81.80 E-value=15 Score=29.81 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=47.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022093 42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104 (302)
Q Consensus 42 ~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l 104 (302)
.+....+=.+.++.|+.+|..+.....-.++ .++.+++.+..+|..|++.|...+.+.-..-
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888899999999999998864221222 3356779999999999999998887766554
No 11
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=69.54 E-value=14 Score=33.10 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 97 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh 97 (302)
++-+++|...|..+|..|.+... ++.++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 67789999999999999998776 3566789999999999998764
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=69.54 E-value=5.2 Score=33.01 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=39.2
Q ss_pred eCCCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEE
Q 022093 191 IKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIY 256 (302)
Q Consensus 191 Ip~DGnCLFrAIadQL~~~~~~~~fd~~~~~~feeY~~~m~~t~~WGG~lEL~ALS~~l~v~I~V~ 256 (302)
=|+||+|-++.|+.-++.--+.. |.+ .|...-+.+..|.++--|.=+=+.++.|+.+.
T Consensus 4 PP~DG~CG~H~i~aI~n~m~~~~-~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat~~ 61 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNHMMGGE-FTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPATLD 61 (108)
T ss_pred CCCCCchHHHHHHHHHHHhhccC-CCc-------cccccCCChHHccChHHHHHHHHHccCceecc
Confidence 47899999999998886532211 222 23334456677888887777777778888774
No 13
>PRK09784 hypothetical protein; Provisional
Probab=58.90 E-value=5.4 Score=37.81 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.1
Q ss_pred hccCCceEeeeCCCCchHHHHHHH
Q 022093 181 LGPLGLTVNDIKPDGHCLYRAVED 204 (302)
Q Consensus 181 L~~~gL~i~~Ip~DGnCLFrAIad 204 (302)
-+.+||.-.+|.|||-||.|||.-
T Consensus 195 n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHH
Confidence 357899999999999999999863
No 14
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=54.69 E-value=35 Score=28.98 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 022093 51 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (302)
Q Consensus 51 kE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (302)
-|+.+|+++|..|--... .++..++.+...|..||..|++--..
T Consensus 25 iERaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999998864443 45688899999999999999865543
No 15
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=53.98 E-value=67 Score=24.87 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 47 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 47 ~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
...+-|..+|++....|..+.. +.+|+.+..++..|-..|+.|..
T Consensus 27 ~hm~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 27 GHMKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666776666665554 57899999999999999998764
No 16
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.07 E-value=34 Score=33.54 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 97 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh 97 (302)
+.+||+.+++|...++..+++++ .+-.+.+++|+.++++|.
T Consensus 41 I~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 67788888888888777776544 255667788888887776
No 17
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.40 E-value=50 Score=29.14 Aligned_cols=54 Identities=37% Similarity=0.521 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhccCChhH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022093 51 KEISQLQNKETELKKAAAKGSKAE---QKAKKKQVEEEISRLSAKLREKHAKELASLG 105 (302)
Q Consensus 51 kE~keLq~~i~~~Kk~a~kg~K~~---~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~ 105 (302)
+++..+++++..++|++....++. .+...+....|+++|+.+|+. ...|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 455666788888888775433311 113345678899999999988 566666664
No 18
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=45.54 E-value=48 Score=29.70 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHHHHHHH---HHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEISQLQNKET---ELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~---~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
.+|-+.+|+++......+. .+|.... ++.+++++++..++.+|+.+|....+
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i----~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELI----EEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777776665544321 1111111 12346788899999999999887654
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.32 E-value=1.1e+02 Score=26.60 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=42.8
Q ss_pred cccccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 35 SQKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 35 ~~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a------~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
+.|+...++.|.+.+..+--+|..++.+.+=.. ++.|. ++=+.+..||..|..+|.++|.
T Consensus 45 T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~----~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 45 TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS----SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888888888888876665543222 34453 5567899999999999988775
No 20
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=41.53 E-value=71 Score=31.65 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Q 022093 42 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE--KHAKELAS 103 (302)
Q Consensus 42 ~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~--rh~~EL~~ 103 (302)
+|.++++|+.|..-||.+.++++.... +-.+|-..|-+||.+ +-+++|.+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~------------Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECG------------EKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999987654 556777778666654 56667765
No 21
>PF05104 Rib_recp_KP_reg: Ribosome receptor lysine/proline rich region; InterPro: IPR007794 The ribosome receptor is an integral endoplasmic reticulum protein that has been suggested to be involved in secretion. This highly conserved region is found towards the C terminus of the transmembrane domain []. The function is unclear.; GO: 0015031 protein transport, 0030176 integral to endoplasmic reticulum membrane
Probab=40.30 E-value=14 Score=32.14 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.3
Q ss_pred cccHHHHHHhHHHHHHHHH
Q 022093 39 QETRDEMLSRHRKEISQLQ 57 (302)
Q Consensus 39 ~e~~eel~~RHrkE~keLq 57 (302)
+.|+||.|+.+|+|+--+|
T Consensus 3 EtSYEEaLAkQrke~~K~~ 21 (151)
T PF05104_consen 3 ETSYEEALAKQRKELEKTQ 21 (151)
T ss_pred cccHHHHHHHHHHHhhccc
Confidence 4678999999999994444
No 22
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=39.99 E-value=1.7e+02 Score=24.11 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcC--------CccCcH-HHHHHHHHhhcccEEEEeCCCCce
Q 022093 193 PDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVEST--------AAWGGE-LELRALTHCLRKHIMIYSGSFPDV 263 (302)
Q Consensus 193 ~DGnCLFrAIadQL~~~~~~~~fd~~~~~~feeY~~~m~~t--------~~WGG~-lEL~ALS~~l~v~I~V~q~~~~~~ 263 (302)
|.-+||--||+.|+.... +++..++..|--+ ...|=- -.+.|||..|+....|+...+ .+
T Consensus 1 P~~~CLL~A~s~at~~~~----------~~LW~~L~~~lPDSlL~n~ei~~~GLSTDhltaLa~~~~~~~~~hs~~~-~~ 69 (104)
T PF05381_consen 1 PALDCLLVAISQATSISP----------ETLWATLCEILPDSLLDNPEIRTLGLSTDHLTALAYRYHFQCTFHSDHG-VL 69 (104)
T ss_pred CCcceeHHhhhhhhCCCH----------HHHHHHHHHhCchhhcCchhhhhcCCcHHHHHHHHHHHheEEEEEcCCc-eE
Confidence 356899999999985421 2233333322111 123322 236899999999999998775 45
Q ss_pred EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccc
Q 022093 264 EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 298 (302)
Q Consensus 264 ~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnS 298 (302)
.+|-.- ....+.|.|.. |--.||..
T Consensus 70 ~~Gi~~-------as~~~~I~ht~---G~p~HFs~ 94 (104)
T PF05381_consen 70 HYGIKD-------ASTVFTITHTP---GPPGHFSL 94 (104)
T ss_pred EeecCC-------CceEEEEEeCC---CCCCcccc
Confidence 577532 24566666664 33468865
No 23
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.17 E-value=75 Score=29.84 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=36.7
Q ss_pred CccccccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 022093 33 DASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 33 ~~~~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (302)
.+.+.--...|.++.-|.+-+-+||.+|..|+..+. ++.-+++++..+|++
T Consensus 36 ~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~------------~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 36 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDID------------SLRGQIQENQYQLNQ 86 (263)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------------HHhhHHHHHHHHHHH
Confidence 333444456688999999999999999999988777 455555666555554
No 24
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=37.51 E-value=2.1e+02 Score=30.93 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022093 87 SRLSAKLREKHAKELASL 104 (302)
Q Consensus 87 ~~le~el~~rh~~EL~~l 104 (302)
++++..|+.+.+.|+..-
T Consensus 295 ekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 295 EKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666655544
No 25
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.88 E-value=1.4e+02 Score=25.97 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022093 48 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 102 (302)
Q Consensus 48 RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~ 102 (302)
+--++.++|+..|..+|+....-+-++.=.+=-.++.++.+|+.||++..+.-..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777776643222222222233677788888888876554443
No 26
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.60 E-value=1.4e+02 Score=23.18 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (302)
+..+-.|+-.++.++-.|-.+-. |-|..-.+||++|..+|+.|
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~--------kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHR--------KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555554444 56667777777777777665
No 27
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.80 E-value=1.4e+02 Score=29.74 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=36.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (302)
.+.+..=.+++..|+.+|..+.....+..| .+++++++.++++.+++++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 456666677788888888888776543333 256778899999998887765
No 28
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.50 E-value=1.7e+02 Score=23.55 Aligned_cols=44 Identities=16% Similarity=0.426 Sum_probs=32.2
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 022093 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 40 e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (302)
.+.+++.....+.+..+..+|..+.+ +.+.+..++..++..|.+
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek------------~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQR------------QEERLREQLKELQEKIQE 106 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877764 344677777777777765
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.99 E-value=1.7e+02 Score=23.19 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 022093 75 QKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 75 ~Kk~rK~v~~e~~~le~el~~ 95 (302)
-+..-+.+.+++..+|.++.+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777777776654
No 30
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.00 E-value=1.3e+02 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el 93 (302)
.+=+.||...++++..++..+.+.-...+ +.-+.++.++.+++..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34478999999999999998887766332 23477888888777654
No 31
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=31.98 E-value=88 Score=30.53 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 49 HrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
.-|.+.+|+.+|..|++.... ..-.+.+||..||..+.+..+
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457899999999999986552 234788999999998776544
No 32
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=31.86 E-value=54 Score=24.20 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=25.0
Q ss_pred hHHHHHHHHhccCCceEeeeCCCCchHHHHHHHHHhc
Q 022093 172 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 208 (302)
Q Consensus 172 ~E~~~l~~~L~~~gL~i~~Ip~DGnCLFrAIadQL~~ 208 (302)
+|.+++...---.+..++-+-+-|.|-| +|.+|+..
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 6777777666666777888889999999 88999864
No 33
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=30.42 E-value=90 Score=30.52 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 49 HrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
.-|.+.+|+.+|..|++....+ .-.+.+||.+||..+++-.+
T Consensus 8 fe~~i~~l~~~i~~l~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 8 FEKPIAELEAKIEELRAVAEDS--------DVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhccc--------cccHHHHHHHHHHHHHHHHH
Confidence 4577899999999999865521 24789999999998776543
No 34
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=29.95 E-value=1.1e+02 Score=28.10 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=37.4
Q ss_pred ccCcHH----HHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccC
Q 022093 235 AWGGEL----ELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 301 (302)
Q Consensus 235 ~WGG~l----EL~ALS~~l~v~I~V~q~~~~~~~ig~e~~~~~~~~~~~~I~L~Y~~h~ygLGeHYnSl~p 301 (302)
.|||.- .+..+|+.+++|+.++..|--. .++... ...+|.++.+... |.+|+|-.|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR-~~~~~~------~~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLR-SIGLGS------DGYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCccc-cccccc------cCCCCeEEEECCC----CccCCCCCc
Confidence 588863 3456689999999999876321 122211 1256788888764 889998765
No 35
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.48 E-value=2.1e+02 Score=22.73 Aligned_cols=45 Identities=11% Similarity=0.391 Sum_probs=31.8
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 022093 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (302)
Q Consensus 40 e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (302)
.+.+++.......+..|...|..+.++ -+.+..++..++.+|.+-
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~------------~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQ------------EEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 456777777788888888887776543 346777777777777654
No 36
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=28 Score=34.70 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=40.7
Q ss_pred chhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC
Q 022093 216 AQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFP 261 (302)
Q Consensus 216 d~~~~~~feeY~~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~ 261 (302)
.+++..+|+.|+.-+..+.+-|+.++|.+++.+|+.+...+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~ 48 (371)
T KOG2605|consen 3 REEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGM 48 (371)
T ss_pred ccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccc
Confidence 3445678999999999999999999999999999999999887654
No 37
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=28.71 E-value=2.7e+02 Score=21.35 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=47.7
Q ss_pred cccccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022093 35 SQKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 104 (302)
Q Consensus 35 ~~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a------~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l 104 (302)
+.+......++...|+++..++...+..++... ++.|. .+=..+.+++..+..++......=+-++
T Consensus 43 t~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 43 TPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALLEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555568889999999999998888877665 34554 5567888888888888887765555443
No 38
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=28.47 E-value=51 Score=32.15 Aligned_cols=78 Identities=27% Similarity=0.274 Sum_probs=49.6
Q ss_pred hhHHHHHHHHhccCCceEe------------eeCCCCch--HHHHHHHHHhcCCC--------CCC---------cchhh
Q 022093 171 TVEDEKLEKKLGPLGLTVN------------DIKPDGHC--LYRAVEDQLAHLSG--------GEE---------SAQSQ 219 (302)
Q Consensus 171 ~~E~~~l~~~L~~~gL~i~------------~Ip~DGnC--LFrAIadQL~~~~~--------~~~---------fd~~~ 219 (302)
..+.+.+..+-..-||.-+ --.||-.| -|.|.++|+..--. ..+ +...+
T Consensus 233 ~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f 312 (358)
T COG3426 233 YTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLF 312 (358)
T ss_pred ccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHH
Confidence 3455555555556666532 22455555 38899999864211 111 23333
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHh
Q 022093 220 VERFENYCKEVESTAAWGGELELRALTHC 248 (302)
Q Consensus 220 ~~~feeY~~~m~~t~~WGG~lEL~ALS~~ 248 (302)
..-+.+|+.++..--.+.|+.||.|||.-
T Consensus 313 ~~~I~~~v~~iapv~v~PGE~EleALA~G 341 (358)
T COG3426 313 VDAIEDRVSWIAPVIVYPGEDELEALAEG 341 (358)
T ss_pred HHHHHHHHhhhcceEecCCchHHHHHHhh
Confidence 35678889999888899999999999964
No 39
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.02 E-value=1.8e+02 Score=30.85 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=33.5
Q ss_pred hcccccccchhhhccCccccCCCccccccccHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q 022093 11 ILGTQMADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAA 68 (302)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~ 68 (302)
.-|+....++....+. ..+.........+.+.....+.+|+.+||.+|+.+...+.
T Consensus 290 ~k~s~f~~~ek~~~~~--~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~ 345 (594)
T PF05667_consen 290 DKGSRFTHSEKPQEAA--PAAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIE 345 (594)
T ss_pred ccccccccccchhhhh--hccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554422211 1122333334455566778889999999999988887764
No 40
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=28.01 E-value=79 Score=28.72 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=34.0
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 022093 41 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 93 (302)
Q Consensus 41 ~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el 93 (302)
+..+..++. .++..|+..|..+++.+.|-. |=.+|=++|.++.++++||
T Consensus 173 ~~~~~~~~~-~~i~~L~kei~~L~~~~~kEk---q~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIERL-EQIEKLEKEIAKLKKKIKKEK---QFNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcC
Confidence 445544443 467788888888888776322 2356778899999888775
No 41
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.71 E-value=1.7e+02 Score=25.35 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 022093 50 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 105 (302)
Q Consensus 50 rkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~---~rh~~EL~~l~ 105 (302)
+.++++....|..||+++. | =-++..+|+.|+.+.+ +.|+.+|..+.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~--d-------~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAK--D-------NEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHhccC--C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777776433 1 2478888899987766 57777777654
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.51 E-value=3e+02 Score=22.78 Aligned_cols=47 Identities=6% Similarity=0.252 Sum_probs=31.1
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 022093 41 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 96 (302)
Q Consensus 41 ~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~r 96 (302)
|.++| +..|.+++..+..+++=..+.. ++.-+++.+|+.+.+.|+.+
T Consensus 31 S~~eL-~kqkd~L~~~l~~L~~q~~s~~--------qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 31 SQGEL-AKQKDQLRNALQSLQAQNASRN--------QRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34554 6666666666666666555555 56678888888888877763
No 43
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.00 E-value=2.1e+02 Score=22.35 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 92 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~e 92 (302)
..+=.++.++||..+..|---+. .|..||.+|+.|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve------------~Vk~E~~kL~~E 52 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVE------------EVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 33444567777777777754443 788899988765
No 44
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=26.84 E-value=1.2e+02 Score=30.98 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 49 HrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
.-|.+.+|+.+|..|++.... ..-.+.+||.+||..+.+-.+
T Consensus 78 fe~pi~ele~ki~el~~~~~~--------~~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANK--------TGVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457889999999999986652 235789999999998766543
No 45
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.73 E-value=2.6e+02 Score=21.54 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=33.6
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 022093 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 40 e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (302)
.+.+++...-...++.++..|..+++. .+.+..++..++..|.+
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~------------~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQ------------LKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 356888888888899999998888754 44777777777777654
No 46
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=26.39 E-value=1.2e+02 Score=29.73 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 022093 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (302)
Q Consensus 49 HrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (302)
.-|.+.+|+.+|..|++....+ .-.+.+||.+|+..+.+...+
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~--------~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKN--------DKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhccc--------ccCHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999865421 247899999999988776544
No 47
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=26.34 E-value=59 Score=25.87 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=24.4
Q ss_pred chhHHHHHHHHhccCCceEeeeCCCC-chHHHHHHHHHh
Q 022093 170 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 207 (302)
Q Consensus 170 r~~E~~~l~~~L~~~gL~i~~Ip~DG-nCLFrAIadQL~ 207 (302)
|..=.+.|...|...|+ || .|+-|||..--.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 44456778888888886 77 999999987655
No 48
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.32 E-value=2.1e+02 Score=22.81 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=34.9
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 022093 39 QETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 98 (302)
Q Consensus 39 ~e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~ 98 (302)
+.|.++-...-.+-++.|+..+..+.+... .+.+++..++..|.+.+.
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~------------~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELA------------ELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHCHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc
Confidence 445666677777777778887777765444 788888888888887764
No 49
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=25.93 E-value=1.1e+02 Score=29.71 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022093 49 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 102 (302)
Q Consensus 49 HrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~ 102 (302)
+-|...+|+++|..+++.+..+ .-.+.++|.+||..+.+--..--.
T Consensus 7 fEkpi~ele~kI~~l~~~~~~~--------~~~~~~eI~~Le~~~~~~~~~iy~ 52 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEEN--------DVDLSDEIERLEKRLAELTKKIYS 52 (317)
T ss_pred hhhHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHhhHHHHhhhhhc
Confidence 4578899999999999887633 347999999999887765544433
No 50
>PRK11020 hypothetical protein; Provisional
Probab=25.45 E-value=2e+02 Score=24.16 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q 022093 44 EMLSRHRKEISQLQNKETELKK 65 (302)
Q Consensus 44 el~~RHrkE~keLq~~i~~~Kk 65 (302)
++.+.|.+|+..|..+|..+|.
T Consensus 31 ~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 31 EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666664
No 51
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.82 E-value=4.2e+02 Score=23.30 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=26.8
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 022093 36 QKKQETRDEMLSRHRKEISQLQNKETELKKAAAK 69 (302)
Q Consensus 36 ~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~k 69 (302)
......++.+.++|-.|+..+|..+.++.+...+
T Consensus 43 k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 43 KKVSADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444567899999999999888888888776664
No 52
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.35 E-value=2.8e+02 Score=25.02 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=34.2
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 022093 40 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 94 (302)
Q Consensus 40 e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~ 94 (302)
..+-.|+++|..|.+-|+.++-..+.... .-.++-|.++.++-++..++.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r-----~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQER-----ELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999998655544332 012455677777777777665
No 53
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.06 E-value=3.1e+02 Score=20.51 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCCh---hHHHhhhHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 93 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~~~Kk~a~kg~K---~~~Kk~rK~v~~e~~~le~el 93 (302)
+--++|-|+|-+|+-+-|.+|--.. -|- +-=||||=.+.+++.+||..+
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~~~--cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIATG--CDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhC--CcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 4458999999999998887775422 222 222466778889999988754
No 54
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.65 E-value=1.5e+02 Score=27.45 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=23.3
Q ss_pred CccccccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHH
Q 022093 33 DASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 92 (302)
Q Consensus 33 ~~~~~~~e~~eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~e 92 (302)
|...+...+.++=++.-.++++.+|.+...|+|++. +++.|..+|-.+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e------------~~~~EydrLlee 201 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE------------GLQDEYDRLLEE 201 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HcccHHHHHHHH
Confidence 333333333333334444444445555555555444 566666666544
No 55
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.43 E-value=2.2e+02 Score=30.00 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=24.2
Q ss_pred HHHHHhHHHHH----HHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEI----SQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 103 (302)
Q Consensus 43 eel~~RHrkE~----keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~ 103 (302)
+++.++|+.++ ..++..+..|++.+- .+.+..+.++|.+ |...|+++|++
T Consensus 470 e~~q~~~~~~l~~~~~~~~~em~~~r~tlE-------~k~~~n~~e~~kk----l~~~~qr~l~e 523 (588)
T KOG3612|consen 470 EELQQTSRRELPVPLRNFELEMAEMRKTLE-------QKHAENIKEEIKK----LAEEHQRALAE 523 (588)
T ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45555566555 333444555555544 2333333334433 34556666665
No 56
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.39 E-value=1.7e+02 Score=31.30 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=26.6
Q ss_pred ccccchhhhccCccccCCCcccccc--ccHHHHHHhHHHHHHHHHHHHHHHHhhhc
Q 022093 15 QMADTQEIEETPSEAHSGDASQKKQ--ETRDEMLSRHRKEISQLQNKETELKKAAA 68 (302)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~--e~~eel~~RHrkE~keLq~~i~~~Kk~a~ 68 (302)
|-|+.+.|+.+-.-.-|-.+--++. ..+-.|++--+-|+.+|++|-|.|..-..
T Consensus 55 qdA~~~~~~~~~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~ 110 (907)
T KOG2264|consen 55 QDALKQNIENLDPYDASCSGYSIGRILREQKRILASVSLELTELEVKRQELNSEIE 110 (907)
T ss_pred cccchhcccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6777777776532211111111111 11223556666777788777555544333
No 57
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.03 E-value=1.8e+02 Score=30.66 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022093 82 VEEEISRLSAKLREKHAKELASLG 105 (302)
Q Consensus 82 v~~e~~~le~el~~rh~~EL~~l~ 105 (302)
-+++|.+|+++|..-|..+..+.-
T Consensus 392 kkEec~kme~qLkkAh~~~ddar~ 415 (654)
T KOG4809|consen 392 KKEECSKMEAQLKKAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhc
Confidence 368999999999999999988653
No 58
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=22.16 E-value=3.4e+02 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 022093 43 DEMLSRHRKEISQLQNKETELKKAAAK 69 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~~~Kk~a~k 69 (302)
-.|...|-+|.|||+.+.+..+..-.|
T Consensus 1081 k~LK~~~e~e~kElk~~l~kkr~e~ik 1107 (1189)
T KOG1265|consen 1081 KALKESLEKETKELKKKLDKKRMEDIK 1107 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666666666655544443333
No 59
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=21.92 E-value=1e+02 Score=32.37 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=40.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 022093 43 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 99 (302)
Q Consensus 43 eel~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~rh~~ 99 (302)
|-..++---|+.+||++|.-|. |+.+.++--|+.+...+..||-.|++.|+.
T Consensus 33 E~dr~~WElERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred hhhhhheehhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 4445677789999999999985 333345567889999999999999998864
No 60
>PF15261 DUF4591: Domain of unknown function (DUF4591)
Probab=21.40 E-value=1.1e+02 Score=26.21 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.3
Q ss_pred ccHHHHHHhHHHHHHHHHH
Q 022093 40 ETRDEMLSRHRKEISQLQN 58 (302)
Q Consensus 40 e~~eel~~RHrkE~keLq~ 58 (302)
..+|.|.+||.+|+....+
T Consensus 109 s~Le~L~~RHe~ek~~Va~ 127 (134)
T PF15261_consen 109 SELEMLEQRHEREKQAVAA 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3479999999999887655
No 61
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.37 E-value=1.8e+02 Score=30.13 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEI 86 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~ 86 (302)
.++||+|--++.. +|.|-+-+++|+++|.+.++|
T Consensus 231 a~kHrqeyeei~~-------qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 231 AKKHRQEYEEIVK-------QAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5789999877543 333333334445555555444
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.85 E-value=4.1e+02 Score=22.79 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 022093 46 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 95 (302)
Q Consensus 46 ~~RHrkE~keLq~~i~~~Kk~a~kg~K~~~Kk~rK~v~~e~~~le~el~~ 95 (302)
++.-+.+.+.|.+.+.++.+..|-.+= ...-.++..+|..|+..|..
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el---~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEEL---REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888877652211 24445667777777777665
No 63
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.13 E-value=1.3e+02 Score=20.34 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHhhcccE
Q 022093 224 ENYCKEVESTAAWGGELELRALTHCLRKHI 253 (302)
Q Consensus 224 eeY~~~m~~t~~WGG~lEL~ALS~~l~v~I 253 (302)
..++.++.+...+=.--.+.+||++|++++
T Consensus 23 ~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 23 RSTISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred cchhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 355666666666777788999999999985
No 64
>KOG4015 consensus Fatty acid-binding protein FABP [Lipid transport and metabolism]
Probab=20.03 E-value=2e+02 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=27.8
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe
Q 022093 220 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM 265 (302)
Q Consensus 220 ~~~feeY~~~m~~t~~WGG~lEL~ALS~~l~v~I~V~q~~~~~~~i 265 (302)
.++|++|+..+- =.+.++=+|...+ |+.++..++..+.|
T Consensus 14 SENFdeymk~lG------V~~~~Rk~a~~~k-p~~~i~~~G~~~~~ 52 (133)
T KOG4015|consen 14 SENFDEYLKALG------VGWATRKIAKLAK-PVLEITQDGDKFTI 52 (133)
T ss_pred ccCHHHHHHhcC------CcHhHHHHHhhcC-CeEEEEEcCCEEEE
Confidence 478999999873 3566777888888 77777766654433
Done!