BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022094
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TFO|A Chain A, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|B Chain B, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|C Chain C, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
pdb|3TFO|D Chain D, Crystal Structure Of A Putative
3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From
Sinorhizobium Meliloti
Length = 264
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 32 VNILGEDARKHINNLVFYVFNPALVASNLANTITYESML 70
V + + R+ N+ NP +V S LA TIT+E +
Sbjct: 160 VRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEETM 198
>pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|B Chain B, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|C Chain C, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|D Chain D, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
Length = 329
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 159 YLWSYVYNIVRASSTGISRESRTIDEPFSKSVADGSISGTGSC 201
YL + A S ISR +RT + + ++ DGS +G G C
Sbjct: 6 YLQATTERFAVAGSFTISRGTRTHADVVTCTIRDGSFTGIGEC 48
>pdb|4A2L|A Chain A, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|B Chain B, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|C Chain C, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|D Chain D, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|E Chain E, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2L|F Chain F, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|A Chain A, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|B Chain B, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|C Chain C, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
pdb|4A2M|D Chain D, Structure Of The Periplasmic Domain Of The Heparin And
Heparan Sulphate Sensing Hybrid Two Component System
Bt4663 In Apo And Ligand Bound Forms
Length = 795
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 41 KHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGS 87
K I N + NP ++SN ++ +S +LW FN L + G+
Sbjct: 245 KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGT 291
>pdb|1V9C|A Chain A, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
pdb|1V9C|B Chain B, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
Length = 218
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 158 IYLWSYVYNIVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQ 217
+ L ++ + RA +TG +R + + K + DG+I G G+ LL+ E + +
Sbjct: 93 VELLAHPEVVARAKATGGTRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGAR 152
Query: 218 LAL 220
AL
Sbjct: 153 PAL 155
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 121 LIIIPAVCKEKGSPFGSPDTCQTYGLA----------YVSLSMAVGAIYLWSYVYNIV-- 168
+I +P V KG+ + DT +TY L SL YL+ NI+
Sbjct: 20 IITVPVVLLNKGTDDATADTRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVF 79
Query: 169 --RASSTGISRESRTIDEPFSKSVADGSISGTGS 200
++ + E+ T DE F S+ D SIS G
Sbjct: 80 NAEYGNSSVFLENSTFDE-FGHSINDYSISPDGQ 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,526
Number of Sequences: 62578
Number of extensions: 326843
Number of successful extensions: 661
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 5
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)