Query 022094
Match_columns 302
No_of_seqs 165 out of 683
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9E-54 1.9E-58 391.0 14.7 292 1-302 2-298 (408)
2 PF03547 Mem_trans: Membrane t 100.0 5.8E-36 1.3E-40 285.8 21.3 272 10-302 2-290 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 1.3E-26 2.9E-31 216.8 15.3 218 6-302 2-224 (321)
4 PRK09903 putative transporter 99.9 2.8E-25 6.1E-30 207.3 17.8 209 11-302 6-215 (314)
5 COG0679 Predicted permeases [G 99.9 4.7E-25 1E-29 205.5 17.3 208 7-302 2-210 (311)
6 TIGR00841 bass bile acid trans 96.9 0.031 6.7E-07 51.7 14.3 132 14-163 140-275 (286)
7 COG0385 Predicted Na+-dependen 95.9 0.29 6.3E-06 45.8 14.2 136 16-170 169-307 (319)
8 PF13593 DUF4137: SBF-like CPA 95.9 0.16 3.5E-06 47.6 12.5 110 15-129 165-281 (313)
9 TIGR00832 acr3 arsenical-resis 94.1 0.53 1.1E-05 44.4 10.6 109 15-127 182-299 (328)
10 PF05684 DUF819: Protein of un 89.3 7.2 0.00016 37.6 12.4 90 13-105 24-117 (378)
11 TIGR00807 malonate_madL malona 77.7 26 0.00057 28.0 8.7 80 15-98 38-117 (125)
12 PF05684 DUF819: Protein of un 76.4 49 0.0011 31.9 12.1 133 16-167 242-375 (378)
13 COG3329 Predicted permease [Ge 74.2 78 0.0017 29.7 12.3 22 247-268 213-234 (372)
14 PF03817 MadL: Malonate transp 70.2 45 0.00097 26.7 8.3 79 15-97 38-116 (125)
15 TIGR00783 ccs citrate carrier 64.9 54 0.0012 31.2 9.4 80 17-99 207-292 (347)
16 PF03616 Glt_symporter: Sodium 54.8 2E+02 0.0044 27.5 12.2 34 139-172 154-187 (368)
17 PF03812 KdgT: 2-keto-3-deoxyg 54.1 1.1E+02 0.0025 28.6 9.3 106 13-126 170-276 (314)
18 PF03601 Cons_hypoth698: Conse 52.2 1.4E+02 0.0031 27.8 9.9 129 16-165 28-167 (305)
19 KOG1650 Predicted K+/H+-antipo 43.3 93 0.002 33.0 7.8 93 31-126 295-387 (769)
20 COG3763 Uncharacterized protei 43.2 45 0.00098 24.1 3.8 25 72-96 3-27 (71)
21 PF05982 DUF897: Domain of unk 40.9 3.2E+02 0.0069 25.9 11.2 21 248-268 174-194 (327)
22 COG2855 Predicted membrane pro 40.0 2E+02 0.0044 27.3 8.7 133 18-164 41-175 (334)
23 PRK01844 hypothetical protein; 39.5 55 0.0012 23.8 3.8 25 72-96 3-27 (72)
24 COG2991 Uncharacterized protei 39.3 33 0.00071 24.9 2.6 26 6-33 3-28 (77)
25 PF03956 DUF340: Membrane prot 38.9 52 0.0011 28.5 4.4 89 65-169 47-136 (191)
26 PRK10669 putative cation:proto 37.3 4.4E+02 0.0096 26.5 13.1 113 49-169 279-392 (558)
27 PRK12460 2-keto-3-deoxyglucona 37.2 2E+02 0.0043 27.1 8.2 100 15-123 167-267 (312)
28 TIGR03802 Asp_Ala_antiprt aspa 37.1 99 0.0021 31.5 6.8 112 11-127 9-140 (562)
29 KOG1965 Sodium/hydrogen exchan 35.7 90 0.0019 31.8 6.0 67 14-80 41-134 (575)
30 TIGR00793 kdgT 2-keto-3-deoxyg 34.7 1.4E+02 0.003 28.0 6.6 106 13-126 170-276 (314)
31 PRK03818 putative transporter; 34.6 2.6E+02 0.0056 28.4 9.3 93 73-171 91-185 (552)
32 PF11299 DUF3100: Protein of u 34.1 3.5E+02 0.0077 24.4 9.5 90 14-103 21-114 (241)
33 COG0798 ACR3 Arsenite efflux p 33.2 4.4E+02 0.0094 25.1 14.0 47 80-127 254-300 (342)
34 TIGR00783 ccs citrate carrier 33.1 4.4E+02 0.0096 25.2 10.5 94 31-126 5-108 (347)
35 PRK04972 putative transporter; 32.6 2.7E+02 0.0059 28.3 9.1 147 12-163 12-178 (558)
36 COG0679 Predicted permeases [G 32.6 3.9E+02 0.0084 24.7 9.5 93 16-111 169-263 (311)
37 PRK11339 abgT putative aminobe 31.3 2.1E+02 0.0045 28.8 7.7 48 17-65 93-140 (508)
38 PRK11677 hypothetical protein; 30.8 61 0.0013 26.5 3.3 20 79-98 6-25 (134)
39 PF03977 OAD_beta: Na+-transpo 29.5 4.3E+02 0.0092 25.3 9.0 80 15-97 213-297 (360)
40 COG5505 Predicted integral mem 28.9 4.1E+02 0.009 25.1 8.6 95 31-131 47-146 (384)
41 TIGR00210 gltS sodium--glutama 28.7 4.9E+02 0.011 25.3 9.7 104 20-130 251-363 (398)
42 TIGR00946 2a69 he Auxin Efflux 28.0 4.6E+02 0.01 24.1 9.3 93 17-112 184-277 (321)
43 PF02673 BacA: Bacitracin resi 27.8 2.8E+02 0.0061 25.2 7.5 59 40-98 179-241 (259)
44 PF06295 DUF1043: Protein of u 26.8 59 0.0013 26.2 2.6 21 79-99 2-22 (128)
45 PRK05326 potassium/proton anti 26.4 4.8E+02 0.01 26.3 9.7 53 18-73 248-300 (562)
46 TIGR03802 Asp_Ala_antiprt aspa 26.2 7E+02 0.015 25.3 11.0 123 16-156 421-548 (562)
47 COG1301 GltP Na+/H+-dicarboxyl 26.2 5.8E+02 0.013 25.0 9.7 62 39-100 38-103 (415)
48 PRK00523 hypothetical protein; 25.6 1.4E+02 0.003 21.8 4.0 24 73-96 5-28 (72)
49 PLN03159 cation/H(+) antiporte 24.7 6.8E+02 0.015 26.8 10.7 87 35-124 311-400 (832)
50 PF03390 2HCT: 2-hydroxycarbox 24.4 4.4E+02 0.0096 25.8 8.4 71 31-101 286-361 (414)
51 COG0475 KefB Kef-type K+ trans 23.5 6.7E+02 0.015 24.1 10.6 64 37-101 264-328 (397)
52 COG3105 Uncharacterized protei 23.3 1.1E+02 0.0024 24.9 3.5 20 79-98 11-30 (138)
53 PF06826 Asp-Al_Ex: Predicted 23.2 4.6E+02 0.01 22.1 12.1 127 15-156 28-157 (169)
54 PRK05274 2-keto-3-deoxyglucona 21.9 2.3E+02 0.0051 26.7 6.0 98 17-122 176-274 (326)
55 PRK12554 undecaprenyl pyrophos 21.4 6E+02 0.013 23.3 8.4 53 1-62 148-207 (276)
56 PF03390 2HCT: 2-hydroxycarbox 21.2 7.9E+02 0.017 24.1 11.1 127 18-154 63-200 (414)
57 COG2056 Predicted permease [Ge 21.0 2.8E+02 0.0061 26.8 6.2 35 68-104 186-220 (444)
58 COG1380 Putative effector of m 20.5 4.5E+02 0.0098 21.3 6.5 77 14-98 39-116 (128)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9e-54 Score=391.03 Aligned_cols=292 Identities=42% Similarity=0.759 Sum_probs=230.1
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHH
Q 022094 1 MGALDLFIASS--IPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFN 78 (302)
Q Consensus 1 ~~~~~~~~~s~--~~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~ 78 (302)
|++++.+-.+- .++++++++..+||++++++.|+++++++|.+|++++++|+|||||+++++++|.+++.+||++|++
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 67788776666 8999999999999999965669999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHH
Q 022094 79 VLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAI 158 (302)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~ 158 (302)
..+++++|.++||++.+++|.|++.|++.+.+|+|+|+|+||+.++.|+|.++++|||+.|.|.++|+.|+++++.++.+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHhhcCCccc-ccC--CCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCcccccccchhhhhH
Q 022094 159 YLWSYVYNIVRASSTGI-SRE--SRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQ 235 (302)
Q Consensus 159 ~~wt~G~~ll~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (302)
++|||||+++.+++.++ +.. ++-|.++.+.+ .++....++++..+++..+.- ++++++.- .+.+.++
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~-~~s~e~~~~~~~k~~ll~~~e-n~~~~~~g--------~~~~~~~ 231 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVP-QPSVESDEDSTCKTLLLASKE-NRNNQVVG--------REGKVKR 231 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccC-CCCcccccccccccccccccc-cCCCceee--------ccccceE
Confidence 99999999887664321 111 11111110000 011111111222222211100 01111110 1111111
Q ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHHhcchhhhhhhcCCCCchhhHHHHHHHhcCccccceeccC
Q 022094 236 QVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGYGNHPQTQLQL 302 (302)
Q Consensus 236 ~~~~~~~~~~~~~~~nPp~ia~~~gliv~~vp~l~~~~~~~~~pl~~i~~~l~~lG~~~vPl~mlvL 302 (302)
+.+...++..+|++++||++|+++|+++|.+||||+++|++++|+++++|+++.+|++++||+|+||
T Consensus 232 ~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvL 298 (408)
T KOG2722|consen 232 RSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVL 298 (408)
T ss_pred EEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhh
Confidence 1111112223689999999999999999999999999999999999999999999999999999986
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=5.8e-36 Score=285.78 Aligned_cols=272 Identities=29% Similarity=0.474 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHH
Q 022094 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSIL 89 (302)
Q Consensus 10 s~~~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 89 (302)
++++++++++++++||+++ |+|+++++..+.+|++++|+++|||+|++++++.+.+++.++|.+++.+++.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 99999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhhHHhh
Q 022094 90 GWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVR 169 (302)
Q Consensus 90 ~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~~ll~ 169 (302)
++++.|++|.++++++.+..+++|+|++++|+|+++++ ||+ +|+.|+.+|.+++++++|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999 554 79999999999999999999999998
Q ss_pred cCCcccccC-CCCC-CCCCccCCCCC-CCCCCC--------C-CC-CCC-CCCcCC-CCcccccCCCccccc--ccchhh
Q 022094 170 ASSTGISRE-SRTI-DEPFSKSVADG-SISGTG--------S-CS-EPL-LSSKEF-LTPADQLALPCTISE--VKGSYS 232 (302)
Q Consensus 170 ~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~--------~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 232 (302)
.++++.+.+ ++.+ .++.++...++ +...++ + ++ ++. ...++. .+..++.+ .+.+.+ ...+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 225 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS-TSPSPSNSTGAEQK 225 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-cCCcccccchhhhh
Confidence 765432211 1111 11111100000 000000 0 00 000 000000 00000000 000000 011111
Q ss_pred hhHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcchhhhhhhcCCCCchhhHHHHHHHhcCccccceeccC
Q 022094 233 MKQQVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGYGNHPQTQLQL 302 (302)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~nPp~ia~~~gliv~~vp~l~~~~~~~~~pl~~i~~~l~~lG~~~vPl~mlvL 302 (302)
.++..+....+.-++.++|||++|+++|++++++|+.+++++. .++.++++++|++++|++|++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~l 290 (385)
T PF03547_consen 226 SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVL 290 (385)
T ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHH
Confidence 1112222222222578999999999999999999999987666 6899999999999999999864
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.94 E-value=1.3e-26 Score=216.76 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHH
Q 022094 6 LFIASSIPVLKVLLITALGSYL-ALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFL 84 (302)
Q Consensus 6 ~~~~s~~~vl~v~ll~~vG~~~-~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~ 84 (302)
+++..+++++++|+++++||++ + |+|+++++..+.+|++++|+++||++|+++.+....+.....+...+.....++
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999 9 999999999999999999999999999999985222233333444444556667
Q ss_pred HHHHHHHHHHH-HhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhh---hHHHHHHHHHhHHHH
Q 022094 85 VGSILGWIVVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYG---LAYVSLSMAVGAIYL 160 (302)
Q Consensus 85 ~~~~l~~~~~~-~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g---~~Y~~i~~~~~~~~~ 160 (302)
..++++|.+.| .+|.++++++.+.+++.|+|++++|+|+++++ ||+ +| +.|+..+.+.+++..
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~~ 146 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLMT 146 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchhH
Confidence 77888999988 77888888999999999999999999999998 775 35 789999999999999
Q ss_pred HHHhhHHhhcCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCcccccccchhhhhHHHHHH
Q 022094 161 WSYVYNIVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLF 240 (302)
Q Consensus 161 wt~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (302)
|++|+.+.+..+++ +++ .. ++.+ +..++.
T Consensus 147 ~~~~~~~~~~~~~~-----~~~-------------------------------~~-----------~~~~----~~~~~~ 175 (321)
T TIGR00946 147 IALGLFLVSEDGAG-----GEG-------------------------------SG-----------ESTR----LMLIFV 175 (321)
T ss_pred HHHHHHHhcccccc-----ccc-------------------------------cc-----------hhHH----HHHHHH
Confidence 99999776543210 000 00 0011 111122
Q ss_pred HHhhhhcccCCHHHHHHHHHHHHhcchhhhhhhcCCCCchhhHHHHHHHhcCccccceeccC
Q 022094 241 FAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGYGNHPQTQLQL 302 (302)
Q Consensus 241 ~~~~~~~~~~nPp~ia~~~gliv~~vp~l~~~~~~~~~pl~~i~~~l~~lG~~~vPl~mlvL 302 (302)
+ ++-+.||+++|+++|+++...+. . .|.++.++++++|++++|++|+++
T Consensus 176 ~----~~~~~nP~iia~i~Gl~~~~~~i--------~-lP~~l~~~l~~lg~~~~plaLl~l 224 (321)
T TIGR00946 176 W----KKLIKFPPLWAPLLSVILSLVGF--------K-MPGLILKSISILSGATTPMALFSL 224 (321)
T ss_pred H----HHHHhCCChHHHHHHHHHHHHhh--------c-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 24578999999999999977652 2 348999999999999999999864
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.93 E-value=2.8e-25 Score=207.30 Aligned_cols=209 Identities=15% Similarity=0.188 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHHH
Q 022094 11 SIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILG 90 (302)
Q Consensus 11 ~~~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 90 (302)
+++++++|+++++||+++ |+|+++++..+.+|++++|+++||++|+++.+. +.+++..-+...+...+.++.+++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456799999999999999 999999999999999999999999999999875 55555423344565777777888888
Q ss_pred HHHHH-HhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhhHHhh
Q 022094 91 WIVVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVR 169 (302)
Q Consensus 91 ~~~~~-~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~~ll~ 169 (302)
|++.| .+|.++++++...+.++++|+||+|+|+++++ ||++ .. .|+.|+.++ ..+|++.|++|..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~--~~-~~~~~a~~~-~~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDS--VS-TGLVVAIIS-IIVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCch--hh-hhhHHHHHH-HHHHHHHHHHHHHHHc
Confidence 88875 55666667778889999999999999999998 7752 10 155555554 4689999999999987
Q ss_pred cCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCcccccccchhhhhHHHHHHHHhhhhccc
Q 022094 170 ASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKINLKSM 249 (302)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (302)
..+.+ + + + + +..++.+ ++-+
T Consensus 152 ~~~~~-----~-~--------------------------------~------------~--~~~~~~l--------~~~~ 171 (314)
T PRK09903 152 PSSGA-----D-G--------------------------------K------------K--NSNLSAL--------ISAA 171 (314)
T ss_pred ccccc-----c-c--------------------------------c------------c--chHHHHH--------HHHH
Confidence 53210 0 0 0 0 0001111 2347
Q ss_pred CCHHHHHHHHHHHHhcchhhhhhhcCCCCchhhHHHHHHHhcCccccceeccC
Q 022094 250 FAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGYGNHPQTQLQL 302 (302)
Q Consensus 250 ~nPp~ia~~~gliv~~vp~l~~~~~~~~~pl~~i~~~l~~lG~~~vPl~mlvL 302 (302)
.||+++|+++|+++.+. +-.. |.++.++++++|++++|++|+.+
T Consensus 172 ~nP~iia~~~gl~~~l~--------~i~l-P~~i~~~l~~lg~~~~PlaL~~i 215 (314)
T PRK09903 172 KEPVVWAPVLATILVLV--------GVKI-PAAWDPTFNLIAKANSGVAVFAA 215 (314)
T ss_pred hchHHHHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998443 3333 48999999999999999999753
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.93 E-value=4.7e-25 Score=205.49 Aligned_cols=208 Identities=22% Similarity=0.304 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHH
Q 022094 7 FIASSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVG 86 (302)
Q Consensus 7 ~~~s~~~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (302)
+...+.+++++|+++++||+++ |.+.++++..+.+|++++|+++|||+|+++.++...++ .++..++. .++..++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~-~~~~~~~~ 77 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVA-SLVATLLA 77 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHH-HHHHHHHH
Confidence 4567889999999999999999 99999999999999999999999999999998643333 44444444 55555555
Q ss_pred HHHHHHHHH-HhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhh
Q 022094 87 SILGWIVVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVY 165 (302)
Q Consensus 87 ~~l~~~~~~-~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~ 165 (302)
.++++++.| .++.++++++.+.++..|+|++++|+|+..++ ||+ +|+.|+.+|....++..|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~ 144 (311)
T COG0679 78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGV 144 (311)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHH
Confidence 555666665 45667777788999999999999999999987 886 6999999999999999999999
Q ss_pred HHhhcCCcccccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcCCCCcccccCCCcccccccchhhhhHHHHHHHHhhh
Q 022094 166 NIVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKIN 245 (302)
Q Consensus 166 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (302)
..+...+.+. + +..+...
T Consensus 145 ~~l~~~~~~~----------------------------------------------------~------~~~~~~~---- 162 (311)
T COG0679 145 ILLARSGGGT----------------------------------------------------N------KSLLSVL---- 162 (311)
T ss_pred HHHHHhcCCc----------------------------------------------------h------hHHHHHH----
Confidence 9988654200 0 0011111
Q ss_pred hcccCCHHHHHHHHHHHHhcchhhhhhhcCCCCchhhHHHHHHHhcCccccceeccC
Q 022094 246 LKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGYGNHPQTQLQL 302 (302)
Q Consensus 246 ~~~~~nPp~ia~~~gliv~~vp~l~~~~~~~~~pl~~i~~~l~~lG~~~vPl~mlvL 302 (302)
++-+.||+++|.++|+++...+ -.. +.++.++++++|++++|++|+++
T Consensus 163 ~~~~~nP~i~a~i~g~~~~~~~--------i~l-P~~~~~~~~~l~~a~~pl~li~l 210 (311)
T COG0679 163 KKLLTNPLIIALILGLLLNLLG--------ISL-PAPLDTAVDLLASAASPLALIAL 210 (311)
T ss_pred HHHHhCcHHHHHHHHHHHHHcC--------CCC-cHHHHHHHHHHHHhhhhHHHHHH
Confidence 3568999999999999996554 223 36899999999999999999753
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.92 E-value=0.031 Score=51.66 Aligned_cols=132 Identities=12% Similarity=0.109 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCCChhHHhh---hhHHHHHHHhhHHHHHHhhcccChhhh-hHHHHHHHHHHHHHHHHHHH
Q 022094 14 VLKVLLITALGSYLALDHVNILGEDARKH---INNLVFYVFNPALVASNLANTITYESM-LKLWFMPFNVLITFLVGSIL 89 (302)
Q Consensus 14 vl~v~ll~~vG~~~~~~k~~il~~~~~~~---ls~lv~~v~lP~Lif~~l~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l 89 (302)
...+++=+.+|..++ |.. ++..+. +..+.. +.+=++++..++.+ .+.+ .+.+.+.+..++..++++.+
T Consensus 140 ~~~v~vPl~lG~~~r--~~~---p~~~~~~~~~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HKL---PQIAKIILKVGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHH--HHh---HHHHHHHHhCchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 566777788899988 431 122222 222211 22223333333332 1222 22344445466778899999
Q ss_pred HHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHH
Q 022094 90 GWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSY 163 (302)
Q Consensus 90 ~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~ 163 (302)
||+..|.+|.+++++....+.++.+|++ +++++..+. |++ +...-+..|...+++.+.++-+-+
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~--~~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP--EVAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888889999999999 888887765 652 222234456666666665554433
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.93 E-value=0.29 Score=45.81 Aligned_cols=136 Identities=18% Similarity=0.105 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhhcccCCCChhHH--hhhhHHHHHHHhhHHHHHHhhcccChhhhhHHH-HHHHHHHHHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLALDHVNILGEDAR--KHINNLVFYVFNPALVASNLANTITYESMLKLW-FMPFNVLITFLVGSILGWI 92 (302)
Q Consensus 16 ~v~ll~~vG~~~~~~k~~il~~~~~--~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~ 92 (302)
++++=...|-+++ + ++.+-.. +..-..+-...+=+.+...++.+ .+++.... .+.+..++...+++.+||+
T Consensus 169 ~vllP~~LG~~~r--~--~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy~ 242 (319)
T COG0385 169 QVLLPFVLGQLLR--P--LLPKWVERLKKALPPVSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGYF 242 (319)
T ss_pred HHHHHHHHHHHHH--H--HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677766 2 1222111 12223333444455555555543 22333222 3444456777899999999
Q ss_pred HHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhhHHhhc
Q 022094 93 VVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRA 170 (302)
Q Consensus 93 ~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~~ll~~ 170 (302)
.+|+++.++++|....++.+-+|.+ ++.++..+- |+++ ....=..+|...+++.-=-++-+.-++
T Consensus 243 ~ar~~g~~~a~~iti~ie~g~qn~~-lg~alA~~f-------~~~~-----~~alP~aif~~~q~~~~a~la~~~~~~ 307 (319)
T COG0385 243 GARLLGFDKADEITIAIEGGMQNLG-LGAALAAAF-------FGNP-----LMALPLAIFSVWQNMSGAVLAGLYARR 307 (319)
T ss_pred HHHHhCCChhheeeEEEeeccccHH-HHHHHHHhc-------CCCc-----hhHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986 344443331 3311 344556667766666655555555444
No 8
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.87 E-value=0.16 Score=47.57 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhhcccCCCChh--HHhhhhHHHHHHHhhHHHHHHhhcccChhh-----hhHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNILGED--ARKHINNLVFYVFNPALVASNLANTITYES-----MLKLWFMPFNVLITFLVGS 87 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~il~~~--~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~-----l~~~~~~~~~~~~~~~~~~ 87 (302)
..+++=..+|-.++ |. +.+. ..|...+.+-...+-.++++++...+..+. ...+..+...++....+.+
T Consensus 165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 45566667788877 32 2221 123345555667777777777765432221 1223334444566677778
Q ss_pred HHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhh
Q 022094 88 ILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCK 129 (302)
Q Consensus 88 ~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~ 129 (302)
.++|...|.++.++++|-...+|++ +.+..+|+|++..+++
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F~gs-~Ksl~~gvpl~~~lf~ 281 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLFCGS-QKSLALGVPLASILFP 281 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEEEcC-cCcchhHHHHHHHHcc
Confidence 8999999999999988876665555 8889999999998833
No 9
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.08 E-value=0.53 Score=44.41 Aligned_cols=109 Identities=10% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhhc--cc---CCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhH----HHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALD--HV---NILGEDARKHINNLVFYVFNPALVASNLANTITYESMLK----LWFMPFNVLITFLV 85 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~--k~---~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~----~~~~~~~~~~~~~~ 85 (302)
..+++=...|..++.. |+ ++..++..+.++.+.. +.+=..++...+.+ .+.+.+ ...+....++...+
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~--~~~i~~~~~~i~~~~~~v~l~~~~ 258 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQ--GETIIELPLDIALIAIPLLIYFYI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHH
Confidence 3445556677777721 11 2222233333444333 22233344444332 222222 22333334577889
Q ss_pred HHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhh
Q 022094 86 GSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (302)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al 127 (302)
++.+||+++|.+|.++++|....++++.+|.+ +++++..+.
T Consensus 259 ~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~-lai~lA~~~ 299 (328)
T TIGR00832 259 MFFLTFALAKKLGLPYSITAPAAFTGASNNFE-LAIAVAISL 299 (328)
T ss_pred HHHHHHHHHHHhCcChhhhhhheehhhhhhHH-HHHHHHHHh
Confidence 99999999999999999999999999999975 445554544
No 10
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=89.30 E-value=7.2 Score=37.58 Aligned_cols=90 Identities=13% Similarity=0.245 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH----HHHHHHHHHHHHHHHH
Q 022094 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL----WFMPFNVLITFLVGSI 88 (302)
Q Consensus 13 ~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~----~~~~~~~~~~~~~~~~ 88 (302)
.+-.+.++...|.++. -.|++|.+....+.+.+....+|..++-=+.+. +.+++.+. ....+.+.+.+++|..
T Consensus 24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445678888899999 899996666667777777777777776665543 44444443 3344445566777777
Q ss_pred HHHHHHHHhCCCCCCcc
Q 022094 89 LGWIVVQFTRPPSHFRG 105 (302)
Q Consensus 89 l~~~~~~~~~~~~~~r~ 105 (302)
+++.+.+..--|+.+|.
T Consensus 101 va~~l~~~~l~~~~wk~ 117 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKI 117 (378)
T ss_pred HHHHHHhhcccchHHHH
Confidence 77777664322444443
No 11
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=77.68 E-value=26 Score=27.97 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVV 94 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (302)
+-+++++....+++ |+|++++++.+.+..-. ...+|-.+-.+-.+++ ...+..=+...+.++.+.+++++.-.++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQNV-VAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhchh-HHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999 99999999999886543 3445655444434442 22333334445556667777777666666
Q ss_pred HHhC
Q 022094 95 QFTR 98 (302)
Q Consensus 95 ~~~~ 98 (302)
|+-|
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 6544
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=76.42 E-value=49 Score=31.90 Aligned_cols=133 Identities=16% Similarity=0.207 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhh-cccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLAL-DHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVV 94 (302)
Q Consensus 16 ~v~ll~~vG~~~~~-~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (302)
.+.....+|..... +.++.+ .+...+..+..|+| |..+...-+...+.+-..+.+++++...+-.++-..+.
T Consensus 242 ~il~~tt~~l~~~~~~~~~~l--~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~~ 314 (378)
T PF05684_consen 242 LILTVTTLGLATSFPPFRKLL--RGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLILG 314 (378)
T ss_pred HHHHHHHHHHHHhccchhhcC--CchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666652 223333 56677888888876 45666666777777754455556666667777777888
Q ss_pred HHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhhHH
Q 022094 95 QFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNI 167 (302)
Q Consensus 95 ~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~~l 167 (302)
|++|.|.+ ....++-.|.|.-.-. .+++.. +++ +-..-|+....+-+...|.+=+..|..+
T Consensus 315 kl~k~~l~----~~~vAS~AnIGGpaTA--~a~A~a----~~~--~Lv~pgvL~gvlGyaiGty~G~~va~~l 375 (378)
T PF05684_consen 315 KLFKIDLF----ELLVASNANIGGPATA--PAVAAA----KGP--SLVPPGVLMGVLGYAIGTYLGLAVAQLL 375 (378)
T ss_pred HHHCCCHH----HHHHHhhcccCCcchH--HHHHHh----cCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998774 2234444555544433 344333 441 2233577777777777777777666543
No 13
>COG3329 Predicted permease [General function prediction only]
Probab=74.17 E-value=78 Score=29.72 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred cccCCHHHHHHHHHHHHhcchh
Q 022094 247 KSMFAPSTIGALAGFIIGLVPL 268 (302)
Q Consensus 247 ~~~~nPp~ia~~~gliv~~vp~ 268 (302)
..|+||.+...+.|+++|++-.
T Consensus 213 Esflnpal~lllggl~iGlitG 234 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLITG 234 (372)
T ss_pred HHHcCchHHHHHHHHHHhheec
Confidence 4599999999999999999863
No 14
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=70.17 E-value=45 Score=26.74 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVV 94 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (302)
+-+++++.+..++. |+|++++++.+.+..-. ...+|-.+-.+-.+++- ..+..=+...+.++...++++++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNVv-~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNVV-AALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhhH-HhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999 99999999999886543 34556655444344321 2222223334445566666666666666
Q ss_pred HHh
Q 022094 95 QFT 97 (302)
Q Consensus 95 ~~~ 97 (302)
|+-
T Consensus 114 r~g 116 (125)
T PF03817_consen 114 RIG 116 (125)
T ss_pred hcC
Confidence 643
No 15
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=64.87 E-value=54 Score=31.23 Aligned_cols=80 Identities=6% Similarity=0.095 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHh---hhhHHHHHHHhhHHHH-HHhhcccChhhhhHHH--HHHHHHHHHHHHHHHHH
Q 022094 17 VLLITALGSYLALDHVNILGEDARK---HINNLVFYVFNPALVA-SNLANTITYESMLKLW--FMPFNVLITFLVGSILG 90 (302)
Q Consensus 17 v~ll~~vG~~~~~~k~~il~~~~~~---~ls~lv~~v~lP~Lif-~~l~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~ 90 (302)
...++.+|.+++ ..|+++++..+ +..|++.+-+++.++. ..++. .+++++.+.. ...+..+...+-..+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~-t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSY-IDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc-CCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345677788888 99999988755 4565666666666555 33332 3777777754 22232333333345566
Q ss_pred HHHHHHhCC
Q 022094 91 WIVVQFTRP 99 (302)
Q Consensus 91 ~~~~~~~~~ 99 (302)
+++.|+++.
T Consensus 284 ~lvGKllG~ 292 (347)
T TIGR00783 284 AFLGKLMGM 292 (347)
T ss_pred HHHHHHhCC
Confidence 778888765
No 16
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=54.83 E-value=2e+02 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=24.1
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHhhHHhhcCC
Q 022094 139 DTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRASS 172 (302)
Q Consensus 139 ~~~~~~g~~Y~~i~~~~~~~~~wt~G~~ll~~~~ 172 (302)
+.+.+-|+.++.+-.+...+.==-++-++++++.
T Consensus 154 ~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 154 EGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4577788888888887776665455666777654
No 17
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=54.15 E-value=1.1e+02 Score=28.61 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHH-HHHHHHHHHHHHHHHH
Q 022094 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFM-PFNVLITFLVGSILGW 91 (302)
Q Consensus 13 ~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~ 91 (302)
+.+..++=+.+|.++. -+|+|.++.+++-.- +.+|.+-| ++....+..++.+-..- .+.+++.+++.....+
T Consensus 170 ~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~~-~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 170 SLVAALLPIIIGMILG-----NLDPDFRKFLAPGVP-ILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3445556677899887 789999998877553 55676655 45566777777765433 2334566666666677
Q ss_pred HHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHh
Q 022094 92 IVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPA 126 (302)
Q Consensus 92 ~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~a 126 (302)
+.-|+++..+..-+ .-.++.-+|...-|-.+.++
T Consensus 243 ~~dr~i~~~~g~aG-~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 243 LADRLILKGNGVAG-AAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHcCCCCcee-ehHHhhhhhhhhhhHHHHHh
Confidence 88887654444343 44678888988888888765
No 18
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=52.17 E-value=1.4e+02 Score=27.80 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhhcc-cCCCChhHHhh---hhHHHHHHHhhHHHHHHhhcccChhhhhHHHH-HHHHHHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLALDH-VNILGEDARKH---INNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILG 90 (302)
Q Consensus 16 ~v~ll~~vG~~~~~~k-~~il~~~~~~~---ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~ 90 (302)
.+++-+.+|..++ . .--.++...+. -+|..+++..=+ +.-+++..++.+... ..+...+.....+.++
T Consensus 28 ~~~~AillG~~i~--n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL-----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~ 100 (305)
T PF03601_consen 28 ALLIAILLGMLIG--NLFFGLPARFKPGIKFSSKKLLRLGIVL-----LGFRLSFSDILALGWKGLLIIIIVVILTFLLT 100 (305)
T ss_pred HHHHHHHHHHHHh--hhccCCcHHHHhHHHHHHHHHHHHHHHH-----HCccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3456667777776 3 22223333333 334555554322 345667788887765 3444566777788888
Q ss_pred HHHH-HHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCC-----CCCCCchhhhhhhhHHHHHHHHHhHHHHHHHh
Q 022094 91 WIVV-QFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKG-----SPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYV 164 (302)
Q Consensus 91 ~~~~-~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~-----~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G 164 (302)
+++. |++|.|++..- ..+++ .++||.+. ..-..+++....++.-+.++..+..+++=.+|
T Consensus 101 ~~lg~r~~~l~~~~~~--Lia~G------------tsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~ 166 (305)
T PF03601_consen 101 YWLGRRLFGLDRKLAI--LIAAG------------TSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLG 166 (305)
T ss_pred HHHHHHHhCCCHHHHH--HHHhh------------cccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHH
Confidence 8888 99999886443 23333 23444321 12333455666777778888776655443344
Q ss_pred h
Q 022094 165 Y 165 (302)
Q Consensus 165 ~ 165 (302)
.
T Consensus 167 ~ 167 (305)
T PF03601_consen 167 H 167 (305)
T ss_pred H
Confidence 3
No 19
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=43.26 E-value=93 Score=33.00 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=60.8
Q ss_pred ccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeee
Q 022094 31 HVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGC 110 (302)
Q Consensus 31 k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~ 110 (302)
|.+-+...-...+..++..+++|+.+..+-.+. +...+..+........+..+.-++.....+..+|.|- |..+.++
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~--~~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPL--RDSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hHHHHHH
Confidence 666666678888999999999999988776654 4455555444444344444555555555566777776 4555566
Q ss_pred eccCCCCCchhHHHHh
Q 022094 111 CAAGNLGNMPLIIIPA 126 (302)
Q Consensus 111 ~~f~N~~~lpl~l~~a 126 (302)
..+++=|.+-+-+...
T Consensus 372 ~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 372 LLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 6666666666665444
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.24 E-value=45 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 72 LWFMPFNVLITFLVGSILGWIVVQF 96 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (302)
.|...++.+++.++|++.|++++|-
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888999999999873
No 21
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=40.94 E-value=3.2e+02 Score=25.87 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.0
Q ss_pred ccCCHHHHHHHHHHHHhcchh
Q 022094 248 SMFAPSTIGALAGFIIGLVPL 268 (302)
Q Consensus 248 ~~~nPp~ia~~~gliv~~vp~ 268 (302)
.+.|+.++-.+-|+++|.+-.
T Consensus 174 ~l~~~sv~LLlGgliIG~~~g 194 (327)
T PF05982_consen 174 SLTNKSVVLLLGGLIIGFLAG 194 (327)
T ss_pred HHcCchHHHHHHHHHHhheeC
Confidence 489999999999999988753
No 22
>COG2855 Predicted membrane protein [Function unknown]
Probab=40.02 E-value=2e+02 Score=27.27 Aligned_cols=133 Identities=10% Similarity=0.040 Sum_probs=73.2
Q ss_pred HHHHHHHHHhh-hcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022094 18 LLITALGSYLA-LDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPF-NVLITFLVGSILGWIVVQ 95 (302)
Q Consensus 18 ~ll~~vG~~~~-~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~ 95 (302)
.+-+.+|..++ ..+.+.-.+.+...-+|...++..= =+.-+++.+++.+...-.+ ...+....++++++++.|
T Consensus 41 ~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIv-----LlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~ 115 (334)
T COG2855 41 TLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIV-----LLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGK 115 (334)
T ss_pred HHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHH-----HHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444 1133333344445556666655421 1234677888887743333 244566777889999999
Q ss_pred HhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHh
Q 022094 96 FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYV 164 (302)
Q Consensus 96 ~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G 164 (302)
+++.|++.- ...+|+.+=||.=-+.-++. ..+.+++....++.-+.++.....++.=.++
T Consensus 116 ~lgld~~~a--~Lia~GssICGasAiaA~~p-------vika~~~eva~aIa~V~lfgtia~llyP~l~ 175 (334)
T COG2855 116 LLGLDKKLA--LLIAAGSSICGASAIAATAP-------VIKAEEEEVAVAIAVVVLFGTLAMLLYPLLY 175 (334)
T ss_pred HhCCCHHHH--HHHHccchhhHHHHHHHhCC-------cCCCCccccceehhhHHHHHHHHHHHHHHHH
Confidence 999888633 33444433333222222111 2445566777888888888876655443333
No 23
>PRK01844 hypothetical protein; Provisional
Probab=39.50 E-value=55 Score=23.79 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 72 LWFMPFNVLITFLVGSILGWIVVQF 96 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (302)
.|...++.+++.++|.+.|++++|.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678888999999999874
No 24
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.28 E-value=33 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 022094 6 LFIASSIPVLKVLLITALGSYLALDHVN 33 (302)
Q Consensus 6 ~~~~s~~~vl~v~ll~~vG~~~~~~k~~ 33 (302)
.++.++...+-+.+.|.+||+.. |+-
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~k--rk~ 28 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFK--RKS 28 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhhee--ccc
Confidence 46667777788889999999987 653
No 25
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=38.86 E-value=52 Score=28.52 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=41.8
Q ss_pred ChhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhh
Q 022094 65 TYESMLKL-WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQT 143 (302)
Q Consensus 65 ~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~ 143 (302)
..+++++. |...+..+...+-+.+.+++..+++..+- +.....+++|+=...=|.-+.+. .|. +
T Consensus 47 ~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~--~~~lav~sG~GwYSlsg~~i~~~--------~~~-----~ 111 (191)
T PF03956_consen 47 ILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSL--KESLAVASGFGWYSLSGVLITQL--------YGP-----E 111 (191)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHccCcHHHhHHHHHHhh--------hCH-----H
Confidence 44555533 23334344444455555666666664443 33334455555443333333221 221 1
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhHHhh
Q 022094 144 YGLAYVSLSMAVGAIYLWSYVYNIVR 169 (302)
Q Consensus 144 ~g~~Y~~i~~~~~~~~~wt~G~~ll~ 169 (302)
-| ..+++.++.-.++-.-.-+-+.+
T Consensus 112 ~G-~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 112 LG-TIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 45566666666665555444444
No 26
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.34 E-value=4.4e+02 Score=26.47 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=54.7
Q ss_pred HHHhhHHHHHHhhcccChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhh
Q 022094 49 YVFNPALVASNLANTITYESMLKLWFMPFNVL-ITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (302)
Q Consensus 49 ~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al 127 (302)
.+++| +.|.++.-+++...+.+.+...+..+ +.++.=++..++.+|.++.+. |..+..+...+.-|-+.+.+..-
T Consensus 279 ~~f~p-lFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~--~~a~~~gl~l~~~Gef~lii~~~- 354 (558)
T PRK10669 279 DAFAV-LFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSR--RTALTIAASLAQIGEFAFILAGL- 354 (558)
T ss_pred HHHHH-HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHhcccchHHHHHHH-
Confidence 56777 56677777777776654432222122 222222334455567776654 33344455555556555554332
Q ss_pred hhcCCCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHhhHHhh
Q 022094 128 CKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVR 169 (302)
Q Consensus 128 ~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~~~~~wt~G~~ll~ 169 (302)
..+. ....+ +.. ..+.-+.+.....+.++|.+..+...
T Consensus 355 ~~~~-gii~~--~~~-~~~v~~~~~t~~~~P~l~~~~~~~~~ 392 (558)
T PRK10669 355 GMAL-NLLPQ--AGQ-NLVLAGAILSIMLNPVLFTLLERYLA 392 (558)
T ss_pred HHhC-CCCCH--HHH-HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2221 12221 111 23344444555556677777666554
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=37.16 E-value=2e+02 Score=27.06 Aligned_cols=100 Identities=21% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGWIV 93 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~ 93 (302)
+.+.+=+.+|.+++ . ++++.++.+.+=+- +.+|-.+| .+...++.+++.+..+ -.+..++...+...+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~Gi~-f~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKGGP-LLIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhccce-EeHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 44667778899887 3 55555554444322 24444333 4566778888887743 4444667778888899999
Q ss_pred HHHhCCCCCCcceeeeeeccCCCCCchhHH
Q 022094 94 VQFTRPPSHFRGLIVGCCAAGNLGNMPLII 123 (302)
Q Consensus 94 ~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l 123 (302)
.|++|.+++. + ...++.-+|..-=|-.+
T Consensus 240 ~rllg~~~~~-g-~li~stAGnAIcgpAAV 267 (312)
T PRK12460 240 DRLVGGTGIA-G-AAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHhCCChhH-H-HHHHHHhhHHHHHHHHH
Confidence 9998765542 2 22333355654444443
No 28
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=37.10 E-value=99 Score=31.45 Aligned_cols=112 Identities=14% Similarity=0.037 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCC--ChhH--------------HhhhhHHHHHHHhhHHHHHHhhcccCh---hhhhH
Q 022094 11 SIPVLKVLLITALGSYLALDHVNIL--GEDA--------------RKHINNLVFYVFNPALVASNLANTITY---ESMLK 71 (302)
Q Consensus 11 ~~~vl~v~ll~~vG~~~~~~k~~il--~~~~--------------~~~ls~lv~~v~lP~Lif~~l~~~~~~---~~l~~ 71 (302)
-++++-+|+++++||++. |.++- +=.+ .-.+...+-++++=. .+..+.-+..+ +.+++
T Consensus 9 ~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~l-Fvy~vG~~~Gp~Ff~~l~~ 85 (562)
T TIGR03802 9 SNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFAL-FIFAIGYEVGPQFFASLKK 85 (562)
T ss_pred HCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHH-HHHHhhhccCHHHHHHHHh
Confidence 477899999999999998 54331 1110 011333333444332 23333322222 23333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhh
Q 022094 72 -LWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (302)
Q Consensus 72 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al 127 (302)
-|...+.+++..+++.++++.+.+++..+...-.. +++-+..|+-.|+-.. +++
T Consensus 86 ~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~G-l~aGalT~tp~l~aA~-~a~ 140 (562)
T TIGR03802 86 DGLREIILALVFAVSGLITVYALAKIFGLDKGTAAG-LAAGGLTQSAVIGTAG-DAI 140 (562)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHhchhhccHHHHHHH-HHH
Confidence 24555667778888888999999999988764433 3677778888887773 555
No 29
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=35.66 E-value=90 Score=31.76 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCCChhHHh----------------hhhH-----------HHHHHHhhHHHHHHhhcccCh
Q 022094 14 VLKVLLITALGSYLALDHVNILGEDARK----------------HINN-----------LVFYVFNPALVASNLANTITY 66 (302)
Q Consensus 14 vl~v~ll~~vG~~~~~~k~~il~~~~~~----------------~ls~-----------lv~~v~lP~Lif~~l~~~~~~ 66 (302)
++.+.+.+.+|+++..+|..|+++.... ..++ +-+.+++|..||.+-.+--..
T Consensus 41 i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l~k~ 120 (575)
T KOG1965|consen 41 ILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSLKKK 120 (575)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccceechh
Confidence 4556677888888885555588887654 3344 888999999999887543222
Q ss_pred hhhhHHHHHHHHHH
Q 022094 67 ESMLKLWFMPFNVL 80 (302)
Q Consensus 67 ~~l~~~~~~~~~~~ 80 (302)
.-..++.-+..+++
T Consensus 121 ~fF~n~~si~~fa~ 134 (575)
T KOG1965|consen 121 QFFRNIGSILLFAI 134 (575)
T ss_pred hhhhhhHHHHHhhh
Confidence 33333333444333
No 30
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=34.65 E-value=1.4e+02 Score=28.05 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 022094 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGW 91 (302)
Q Consensus 13 ~vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 91 (302)
..+-..+=+.+|+++. -+|++.++.+++-. .+.+|.+-| .+....+.+++.+-.. -.+.+++.+++.....+
T Consensus 170 ~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 170 VFVGAVLPFLVGFALG-----NLDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHHHHHHHh-----cCCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3445556667899887 78999888877654 355566555 3556667777766532 23335666777777788
Q ss_pred HHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHh
Q 022094 92 IVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPA 126 (302)
Q Consensus 92 ~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~a 126 (302)
+..|++...+..-| .-.++.-+|...-|-.+.++
T Consensus 243 ~~dr~~~g~~g~aG-~A~sstAGnAvatPaavA~a 276 (314)
T TIGR00793 243 LADKFIGGGDGTAG-IAASSSAGAAVATPVLIAEM 276 (314)
T ss_pred HHHHHhcCCCCchh-hHHHHHHHHhhhhHHHHHHh
Confidence 88888753333334 33667788888888887664
No 31
>PRK03818 putative transporter; Validated
Probab=34.60 E-value=2.6e+02 Score=28.39 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 022094 73 WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLS 152 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~ 152 (302)
+...+.+++..+++.++++.+.++++.+...-. =+++-+..|+-.|+-.. +++ ++.+ .. .+....-++.|...|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~aGa~T~tp~l~aa~-~~~-~~~~--~~-~~~~~~~a~gYa~~Y 164 (552)
T PRK03818 91 LRLNLFAVLIVILGGLVTAILHKLFGIPLPVML-GIFSGAVTNTPALGAGQ-QIL-RDLG--TP-GDLVDQMGMGYAMAY 164 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHhhccccccHHHHHHH-HHH-hccC--CC-ccccCCcchhhHhHh
Confidence 444555777778888889988888998765332 22455556666666553 333 2100 00 000012456777777
Q ss_pred HHHhHHHHHH--HhhHHhhcC
Q 022094 153 MAVGAIYLWS--YVYNIVRAS 171 (302)
Q Consensus 153 ~~~~~~~~wt--~G~~ll~~~ 171 (302)
-+.--..... +...+++.+
T Consensus 165 p~g~i~~il~~~~~~~~~~~~ 185 (552)
T PRK03818 165 PFGICGILLSMWLIRLIFRIN 185 (552)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 6543333322 456666544
No 32
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.15 E-value=3.5e+02 Score=24.37 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhcc----cCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHHH
Q 022094 14 VLKVLLITALGSYLALDH----VNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSIL 89 (302)
Q Consensus 14 vl~v~ll~~vG~~~~~~k----~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 89 (302)
.++++--+.+|..+..++ +++++++..+.-++++.-..+|...=.....--+.+++.+..+..++==+..+-.+++
T Consensus 21 llPmlyA~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~GnlGTill 100 (241)
T PF11299_consen 21 LLPMLYALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFGNLGTILL 100 (241)
T ss_pred hHHHHHHHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhcchhhHHH
Confidence 356666666676666323 4789999999999999988888765444433335677777766555432223333444
Q ss_pred HHHHHHHhCCCCCC
Q 022094 90 GWIVVQFTRPPSHF 103 (302)
Q Consensus 90 ~~~~~~~~~~~~~~ 103 (302)
+.=++-+++.+|+-
T Consensus 101 aLPiAllLGlkREa 114 (241)
T PF11299_consen 101 ALPIALLLGLKREA 114 (241)
T ss_pred HhHHHHHhcccHHh
Confidence 55555555665653
No 33
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=33.20 E-value=4.4e+02 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhh
Q 022094 80 LITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (302)
Q Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al 127 (302)
++.+...+.++++..|..+.|-++.... .-++-||.--+-+++.-++
T Consensus 254 ~iy~~~~~~i~~~i~k~lgl~y~~~~~~-~ft~aSNnfeLAiAvAi~l 300 (342)
T COG0798 254 LIYFLLMFFISYFIAKALGLPYEDAAAL-VFTGASNNFELAIAVAIAL 300 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhce-eeeeccccHHHHHHHHHHh
Confidence 4566677889999999999887755543 3444455544555554444
No 34
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=33.07 E-value=4.4e+02 Score=25.17 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=57.9
Q ss_pred ccCCCChhHHhhhhHHH-----HHHHhhHHHHHHhhcccChhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 022094 31 HVNILGEDARKHINNLV-----FYVFNPALVASNLANTITYESMLKL--WFMPFNVLITFLVGSILGWIVVQFTRPPSHF 103 (302)
Q Consensus 31 k~~il~~~~~~~ls~lv-----~~v~lP~Lif~~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 103 (302)
..|+++++..+..+++. .|++.-||+.-|+..- +.+.|.+- .++|. .++..+.+++++.++..++..+..+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p~-il~g~~~a~~~g~lvG~l~G~~~~~ 82 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIPP-ALIGMVLAVIVGILVGTLFGLGFDH 82 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 67899999999888854 5789999999998653 44444443 22232 3345555566666666666554432
Q ss_pred c--ceeeeeeccCC-CCCchhHHHHh
Q 022094 104 R--GLIVGCCAAGN-LGNMPLIIIPA 126 (302)
Q Consensus 104 r--~~~~~~~~f~N-~~~lpl~l~~a 126 (302)
- ....-..+-+| .|-+|++.+.+
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~ 108 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYS 108 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHH
Confidence 2 22223333333 56899988766
No 35
>PRK04972 putative transporter; Provisional
Probab=32.63 E-value=2.7e+02 Score=28.29 Aligned_cols=147 Identities=7% Similarity=-0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCChhHHhh----------------hhHHHHHHHhhHHHHHHhhcccChhhhhHH---
Q 022094 12 IPVLKVLLITALGSYLALDHVNILGEDARKH----------------INNLVFYVFNPALVASNLANTITYESMLKL--- 72 (302)
Q Consensus 12 ~~vl~v~ll~~vG~~~~~~k~~il~~~~~~~----------------ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~--- 72 (302)
++.+.+|+.+++||++. |.++-+-+--.. +...+-++.+ +|.+..+.-+..++=+..+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl-~lF~~~vG~~~Gp~F~~~l~~~ 88 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGF-MLFIFCVGVEAGPNFFSIFFRD 88 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHH-HHHHHHHhhhhhHHHHHHHHHh
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHH
Q 022094 73 -WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSL 151 (302)
Q Consensus 73 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i 151 (302)
+...+.+++..+++.++++.+.++++.+...-... ++-+..|+-.|+... +++....-++-.......+-++.|...
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~aGa~T~tp~l~~a~-~~~~~~~~~~~~~~~~~~~~~vgYa~~ 166 (558)
T PRK04972 89 GKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGM-LAGSMTSTPVLVGAG-DTLRHSGAESRQLSLALDNLSLGYALT 166 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-hhccccCcHHHHHHH-HHHhccCccccchhcccCccchhHHhH
Q ss_pred HHHHhHHHHHHH
Q 022094 152 SMAVGAIYLWSY 163 (302)
Q Consensus 152 ~~~~~~~~~wt~ 163 (302)
|.+..-...+..
T Consensus 167 y~~g~i~~i~~~ 178 (558)
T PRK04972 167 YLIGLVSLIVGA 178 (558)
T ss_pred HHHHHHHHHHHH
No 36
>COG0679 Predicted permeases [General function prediction only]
Probab=32.60 E-value=3.9e+02 Score=24.72 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHH--HHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLI--TFLVGSILGWIV 93 (302)
Q Consensus 16 ~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~ 93 (302)
+.+.-..+|..++ ..|+--++....--+..-+...||-++.-= -++......+...-.+.... -.++.-++++++
T Consensus 169 P~i~a~i~g~~~~--~~~i~lP~~~~~~~~~l~~a~~pl~li~lG-~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 169 PLIIALILGLLLN--LLGISLPAPLDTAVDLLASAASPLALIALG-LSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred cHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHhhhhHHHHHHh-hhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3455566677766 666666666666677777777787665432 22222222222111222222 366777778888
Q ss_pred HHHhCCCCCCcceeeeee
Q 022094 94 VQFTRPPSHFRGLIVGCC 111 (302)
Q Consensus 94 ~~~~~~~~~~r~~~~~~~ 111 (302)
.++++.+...+.+.+...
T Consensus 246 ~~~~~l~~~~~~v~vl~~ 263 (311)
T COG0679 246 AKLLGLSGLALQVLVLLS 263 (311)
T ss_pred HHHcCCChHHHHHHHHHh
Confidence 888888777665544433
No 37
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=31.27 E-value=2.1e+02 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccC
Q 022094 17 VLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTIT 65 (302)
Q Consensus 17 v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~ 65 (302)
+.+++.+|...+ .|.|.++.--++.+.+.--+..+|..+|..+..+..
T Consensus 93 ~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a 140 (508)
T PRK11339 93 AILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS 140 (508)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence 333444444333 289999999999999888888888888887776543
No 38
>PRK11677 hypothetical protein; Provisional
Probab=30.82 E-value=61 Score=26.52 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 022094 79 VLITFLVGSILGWIVVQFTR 98 (302)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~ 98 (302)
+++..++|+++|+++.|+..
T Consensus 6 a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 44778889999999999754
No 39
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=29.50 E-value=4.3e+02 Score=25.27 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhcccCCCC---hhHHhhhhHHHHHHHhhHHHHHHhh-cc-cChhhhhHHHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNILG---EDARKHINNLVFYVFNPALVASNLA-NT-ITYESMLKLWFMPFNVLITFLVGSIL 89 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~il~---~~~~~~ls~lv~~v~lP~Lif~~l~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~l 89 (302)
.+++.....|-++| ..|..+ +..++.+.+.+. +++=-.+=.+.. +. ++++.+.-+..-.+...+.++-|.+.
T Consensus 213 ~pLig~Lm~Gnl~r--Esgv~~rLs~taqn~l~nivT-i~LGl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tagGvl~ 289 (360)
T PF03977_consen 213 APLIGMLMFGNLLR--ESGVVERLSKTAQNELMNIVT-IFLGLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAGGVLF 289 (360)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45667777899988 887733 444444444443 222221111111 11 23444433222222223445556666
Q ss_pred HHHHHHHh
Q 022094 90 GWIVVQFT 97 (302)
Q Consensus 90 ~~~~~~~~ 97 (302)
+++...+.
T Consensus 290 ~k~mn~f~ 297 (360)
T PF03977_consen 290 AKLMNLFS 297 (360)
T ss_pred HHHHHHHh
Confidence 66666544
No 40
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=28.88 E-value=4.1e+02 Score=25.13 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=57.5
Q ss_pred ccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-
Q 022094 31 HVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL----WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRG- 105 (302)
Q Consensus 31 k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~- 105 (302)
-.|.++ ....-+.-+-|-.+|++|+--+.+- +..++.+. ..+.+.+.+..++|+.+++.+.+-+.. +-+|.
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~g-d~Wka~ 122 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKSFIG-DLWKAG 122 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHhhh
Confidence 678885 6667778888889999998877552 44444433 455555667778888888887775443 33332
Q ss_pred eeeeeeccCCCCCchhHHHHhhhhcC
Q 022094 106 LIVGCCAAGNLGNMPLIIIPAVCKEK 131 (302)
Q Consensus 106 ~~~~~~~f~N~~~lpl~l~~al~~~~ 131 (302)
..+.++--+ |.+-+.-+|+..+.+
T Consensus 123 gmi~gSytG--GSaNmAAmqaaLeVP 146 (384)
T COG5505 123 GMISGSYTG--GSANMAAMQAALEVP 146 (384)
T ss_pred hheeeeeeC--CcchHHHHHhhhcCC
Confidence 222233222 244455556654443
No 41
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=28.70 E-value=4.9e+02 Score=25.31 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=54.1
Q ss_pred HHHHHHHhhh--c--ccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHH-HHHHHHHHHHHHHHH-HHH
Q 022094 20 ITALGSYLAL--D--HVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFM-PFNVLITFLVGSILG-WIV 93 (302)
Q Consensus 20 l~~vG~~~~~--~--k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~-~~~ 93 (302)
.+.+|.+.+. + |...++++..+.++.+...+++=+ +++ ++++.++.+++.- .+..+...+...+.. |+.
T Consensus 251 am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~----Alm-sL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~ 325 (398)
T TIGR00210 251 CLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAI----ALM-SLQLWELADLAGPIALILLVQVMFMALYAIFVT 325 (398)
T ss_pred HHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHH----HHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555552 2 222355558888888888877533 333 3466677766433 332333444444444 344
Q ss_pred HHHhCCCCCCcceeeeeeccCCC-C--CchhHHHHhhhhc
Q 022094 94 VQFTRPPSHFRGLIVGCCAAGNL-G--NMPLIIIPAVCKE 130 (302)
Q Consensus 94 ~~~~~~~~~~r~~~~~~~~f~N~-~--~lpl~l~~al~~~ 130 (302)
.|.++.+ +.+.++.+.-++-. | --++..+++++++
T Consensus 326 fr~mg~~--ydaaV~~ag~~G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 326 FRLMGKD--YDAAVLCAGHCGFGLGATPTAIANMQAVTER 363 (398)
T ss_pred HHhccch--HHHHHHhcccccccccchHHHHHHHHHHHhc
Confidence 4555433 34333222222222 2 4567888999888
No 42
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=27.99 E-value=4.6e+02 Score=24.08 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 17 VLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESML-KLWFMPFNVLITFLVGSILGWIVVQ 95 (302)
Q Consensus 17 v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (302)
.+.-+.+|..+. -.|+--++....--+.+-+...|+-++.-=. .+...+.. +++......++=.++.-++++.+.+
T Consensus 184 ~iia~i~Gl~~~--~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~-~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 184 PLWAPLLSVILS--LVGFKMPGLILKSISILSGATTPMALFSLGL-ALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred ChHHHHHHHHHH--HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHH-hhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677766 5555445566666667777777876665322 22222232 2333444345556666777788888
Q ss_pred HhCCCCCCcceeeeeec
Q 022094 96 FTRPPSHFRGLIVGCCA 112 (302)
Q Consensus 96 ~~~~~~~~r~~~~~~~~ 112 (302)
.++.+...++..+..++
T Consensus 261 ~~~l~~~~~~~~vl~aa 277 (321)
T TIGR00946 261 LIGLRGLELSVAILQAA 277 (321)
T ss_pred HhCCChHHHHHHHHHHc
Confidence 88887776665554444
No 43
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=27.78 E-value=2.8e+02 Score=25.18 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=34.3
Q ss_pred HhhhhHHHHHHHhhHHHHHHhhcccChh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022094 40 RKHINNLVFYVFNPALVASNLANTITYE----SMLKLWFMPFNVLITFLVGSILGWIVVQFTR 98 (302)
Q Consensus 40 ~~~ls~lv~~v~lP~Lif~~l~~~~~~~----~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 98 (302)
++.-.++.+.+.+|+.+-..+.+-.+.. +..++....+..+++.+++++.-+.+.|+.+
T Consensus 179 r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~ 241 (259)
T PF02673_consen 179 REEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLK 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778888999999888876532211 1223333344344555666665555556555
No 44
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.80 E-value=59 Score=26.22 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 022094 79 VLITFLVGSILGWIVVQFTRP 99 (302)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~ 99 (302)
+++..++|+++|+++.|+...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 456778899999999987653
No 45
>PRK05326 potassium/proton antiporter; Reviewed
Probab=26.44 E-value=4.8e+02 Score=26.32 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHH
Q 022094 18 LLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLW 73 (302)
Q Consensus 18 ~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~ 73 (302)
+.....|..+. ....-.++..+...+.+..++.|. +|..+.-.+++..+.+.+
T Consensus 248 la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~ 300 (562)
T PRK05326 248 LAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIA 300 (562)
T ss_pred HHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH
Confidence 34456677776 444445555555666666677766 577777667777766543
No 46
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=26.24 E-value=7e+02 Score=25.34 Aligned_cols=123 Identities=8% Similarity=-0.035 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhhcc---cCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLALDH---VNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLK-LWFMPFNVLITFLVGSILGW 91 (302)
Q Consensus 16 ~v~ll~~vG~~~~~~k---~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~ 91 (302)
.++.=+.+|++-+ + .+-+++.+...+.++=+.+|+=|.=+++=.+- .+.+++ -|.+.+.+++..++..++++
T Consensus 421 ~l~~gl~~g~~~~--~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f--~~~l~~~G~~~~~~g~~~~~~~~~~~~ 496 (562)
T TIGR03802 421 ALISGLVFGWLRS--KHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQA--VTAIKEMGLTLFLLGIVVTILPLIITM 496 (562)
T ss_pred HHHHHHHHHHhcc--cCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444445566543 3 22388888888999999888887644432221 122222 34455557777777778888
Q ss_pred HHH-HHhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHh
Q 022094 92 IVV-QFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVG 156 (302)
Q Consensus 92 ~~~-~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~ 156 (302)
++. +++|.+...-. =.++-+..|+-.|+.. +...+ ++ .-++.|...|-+..
T Consensus 497 ~~~~~~~~~~~~~~~-G~~aG~~t~t~~l~~a--~~~~~-------~~----~~~~gYa~~Yp~~~ 548 (562)
T TIGR03802 497 LIGKYVLKYDPALLL-GALAGARTATPALGAV--LERAG-------SS----VPALGYTITYALGN 548 (562)
T ss_pred HHHHHHhCCCHHHHH-HHhhccCCCcHHHHHH--HHhcC-------CC----CcccchHhHHHHHH
Confidence 888 57887664221 1234444454444444 22211 10 13567888877644
No 47
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=26.17 E-value=5.8e+02 Score=24.98 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHhhhhHHHHHHHhhHHHHHHhhcccCh---hhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 022094 39 ARKHINNLVFYVFNPALVASNLANTITY---ESMLKL-WFMPFNVLITFLVGSILGWIVVQFTRPP 100 (302)
Q Consensus 39 ~~~~ls~lv~~v~lP~Lif~~l~~~~~~---~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 100 (302)
..+.+-+++-.+..|-.+++-+..--+. +.+.++ +...++..+...++.++|..++.+++..
T Consensus 38 lg~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~~A~~iGl~~~~~~~Pg 103 (415)
T COG1301 38 LGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPG 103 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445556666777787766644332233 333333 4445556677778888999999888754
No 48
>PRK00523 hypothetical protein; Provisional
Probab=25.57 E-value=1.4e+02 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022094 73 WFMPFNVLITFLVGSILGWIVVQF 96 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~ 96 (302)
|...++.++..++|.+.|++++|.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788899999998874
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=24.67 E-value=6.8e+02 Score=26.83 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=44.7
Q ss_pred CChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH--H-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeee
Q 022094 35 LGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL--W-FMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCC 111 (302)
Q Consensus 35 l~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 111 (302)
+..+....+..++..+++|...... .-.++...+.+. | .+.+..++.++.=++-+++.+++++.|.+ ..+..+.
T Consensus 311 ~~~~l~ekle~~~~~lflPlFFv~v-Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~--eal~lG~ 387 (832)
T PLN03159 311 LGVTLIEKLEDFVSGLLLPLFFAIS-GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR--EGITLGF 387 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHH
Confidence 3455567788888899999877654 444455555432 1 22221222222223445556677776654 2233344
Q ss_pred ccCCCCCchhHHH
Q 022094 112 AAGNLGNMPLIII 124 (302)
Q Consensus 112 ~f~N~~~lpl~l~ 124 (302)
..+.-|-+.+.+.
T Consensus 388 lm~~kG~~~Lii~ 400 (832)
T PLN03159 388 LMNTKGLVEMIVL 400 (832)
T ss_pred HHhcccHHHHHHH
Confidence 4333454554443
No 50
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=24.39 E-value=4.4e+02 Score=25.82 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=43.5
Q ss_pred ccCCCChhH---HhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022094 31 HVNILGEDA---RKHINNLVFYVFNPALVASNLANTITYESMLKLWFM--PFNVLITFLVGSILGWIVVQFTRPPS 101 (302)
Q Consensus 31 k~~il~~~~---~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (302)
-.|+++++- .++..|++.+-++|.+++--=....+++++.+..-. .+.++...+...+-++++.|+++.-+
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YP 361 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYP 361 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 577888654 667888998888888776433333466666655321 22233334444556777778876544
No 51
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=23.49 E-value=6.7e+02 Score=24.13 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=43.6
Q ss_pred hhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022094 37 EDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFM-PFNVLITFLVGSILGWIVVQFTRPPS 101 (302)
Q Consensus 37 ~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (302)
++-.+++..+-.-+++|- .|.++.-+.+++.+.+.+.. .....+..+.=.+..++.+|.++.++
T Consensus 264 ~~l~~~i~~~~~~~fipl-FFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 264 HELEEKIEPFGDGLFIPL-FFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHhHHhHHHHHH-HHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 677788888877788875 56677777788887777666 33334444444566777788887443
No 52
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=1.1e+02 Score=24.88 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 022094 79 VLITFLVGSILGWIVVQFTR 98 (302)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~ 98 (302)
+.+..++|+++|++++|+.+
T Consensus 11 a~igLvvGi~IG~li~Rlt~ 30 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTN 30 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 34677889999999999764
No 53
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=23.21 E-value=4.6e+02 Score=22.14 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhhcccCC-CChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH-HHHHHHHHHHHHHHHHHHHH
Q 022094 15 LKVLLITALGSYLALDHVNI-LGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITFLVGSILGWI 92 (302)
Q Consensus 15 l~v~ll~~vG~~~~~~k~~i-l~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~ 92 (302)
..++.=+.+|++-+ +... ++.+....+.++-+.+|+=|.=.++=. ++ .+.+++. +...+.+++..+++.++++.
T Consensus 28 G~L~vgL~~G~~~~--~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~-~F-~~~l~~~G~~~~~~~~~i~~~~~~~~~~ 103 (169)
T PF06826_consen 28 GVLFVGLILGALGR--TGPIFLPISAPSFLRQLGLALFLAAVGLSAGP-GF-FSSLKRGGLKLLLLGVIITLVPLLIALV 103 (169)
T ss_pred HHHHHHHHHHHhhh--ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666667788765 4333 477777778888887777665333211 11 1222222 44556677888888999999
Q ss_pred HHH-HhCCCCCCcceeeeeeccCCCCCchhHHHHhhhhcCCCCCCCchhhhhhhhHHHHHHHHHh
Q 022094 93 VVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVG 156 (302)
Q Consensus 93 ~~~-~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al~~~~~~~fg~~~~~~~~g~~Y~~i~~~~~ 156 (302)
+.| ++|.+...-. =.++-+..|+-.|+... +++.++ +.+ +-++.|...|-+..
T Consensus 104 ~~~~~~~l~~~~~~-G~~aGa~T~tp~L~~A~-~~~~~~-----~~~----~~~vgYa~~Yp~g~ 157 (169)
T PF06826_consen 104 IGRYLFKLNPGIAA-GILAGALTSTPALAAAQ-EAISDS-----GIP----AIAVGYAVTYPFGV 157 (169)
T ss_pred HHHHHcCCCHHHHH-HHHHccccCcHHHHHHH-HhhhcC-----CCc----hhhhhHHHHHHHHH
Confidence 998 7887765322 22444455555555443 222221 110 12477887777643
No 54
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=21.89 E-value=2.3e+02 Score=26.71 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 022094 17 VLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITFLVGSILGWIVVQ 95 (302)
Q Consensus 17 v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~ 95 (302)
..+.+.+|..++ - ++++.++.+.+= .++.+|+.+|. +....+.+++..- +.-++..++..++...+++++.|
T Consensus 176 allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~R 248 (326)
T PRK05274 176 AVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADR 248 (326)
T ss_pred HHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhh
Confidence 337778888887 2 444444333332 34488887776 6667777666555 33344445555566666788889
Q ss_pred HhCCCCCCcceeeeeeccCCCCCchhH
Q 022094 96 FTRPPSHFRGLIVGCCAAGNLGNMPLI 122 (302)
Q Consensus 96 ~~~~~~~~r~~~~~~~~f~N~~~lpl~ 122 (302)
+++.+++..+.. ..++-+|..-=|-.
T Consensus 249 l~~~~~g~~g~a-~~ttaG~aic~pAA 274 (326)
T PRK05274 249 LIGGGNGVAGAA-AGSTAGNAVATPAA 274 (326)
T ss_pred eeecCCCcchHH-HHHHHHHHHHHHHH
Confidence 886544433332 34444554433333
No 55
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.40 E-value=6e+02 Score=23.32 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhc
Q 022094 1 MGALDLFIASSIPVLKVL-------LITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLAN 62 (302)
Q Consensus 1 ~~~~~~~~~s~~~vl~v~-------ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~ 62 (302)
|+..+.++.-+-|.+-++ .-+..|.++. ++ ++.-.++.+.+.+|+++-..+.+
T Consensus 148 ~~~~dAl~IGl~Q~~AliPGiSRSG~TI~a~l~~G------~~---r~~Aa~fSFllsiP~i~gA~~l~ 207 (276)
T PRK12554 148 LTWKDAIIIGLAQALALIPGVSRSGATIIAGLLLG------LT---REAAARFSFLLAIPAVFGAGLLE 207 (276)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCchHHHHHHHHcC------CC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345565655555554443 2333333332 12 34556777888899998777754
No 56
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=21.25 E-value=7.9e+02 Score=24.11 Aligned_cols=127 Identities=18% Similarity=0.235 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhcccCCCChhHHhhhhHHH-----HHHHhhHHHHHHhhcccChhhhhHH--HHHHHHHHHHHHHHHHHH
Q 022094 18 LLITALGSYLALDHVNILGEDARKHINNLV-----FYVFNPALVASNLANTITYESMLKL--WFMPFNVLITFLVGSILG 90 (302)
Q Consensus 18 ~ll~~vG~~~~~~k~~il~~~~~~~ls~lv-----~~v~lP~Lif~~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~ 90 (302)
++...+.-++. ..|+++++..+..+++. .|++.-|||.-|+..- +.+.+.+- .++|. .+...+.+++++
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p~-il~g~~~a~~~g 138 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIPP-ILGGVIGAFLLG 138 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34445556666 78999999999888876 5789999999998653 44444443 22222 344555555555
Q ss_pred HHHHHHhCCCCCCc--ceeee-eeccCCCCCchhHHHHhhhhcCCCCCC-CchhhhhhhhHHHHHHHH
Q 022094 91 WIVVQFTRPPSHFR--GLIVG-CCAAGNLGNMPLIIIPAVCKEKGSPFG-SPDTCQTYGLAYVSLSMA 154 (302)
Q Consensus 91 ~~~~~~~~~~~~~r--~~~~~-~~~f~N~~~lpl~l~~al~~~~~~~fg-~~~~~~~~g~~Y~~i~~~ 154 (302)
.++..++..+..+- ....- +.+-.+.|-+|++.+.+= ..| +.++-.+..++.+.+-++
T Consensus 139 ~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~------~~g~~~~~~~s~~ipa~~lgNi 200 (414)
T PF03390_consen 139 GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE------ALGQDAEEYFSQLIPALTLGNI 200 (414)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHH
Confidence 55555555433211 11122 222233568888876552 233 344444455555555554
No 57
>COG2056 Predicted permease [General function prediction only]
Probab=21.01 E-value=2.8e+02 Score=26.85 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q 022094 68 SMLKLWFMPFNVLITFLVGSILGWIVVQFTRPPSHFR 104 (302)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r 104 (302)
++.+.|.......+.+++|.+++.++.+ |+||+++
T Consensus 186 ~~~~V~~am~ip~lgMi~GLl~ai~~~Y--rKpReY~ 220 (444)
T COG2056 186 SVNQVPKAMWIPGLGMIVGLLLAIFVSY--RKPREYQ 220 (444)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhh--cCCcccc
Confidence 3444566666566888888888877754 6677765
No 58
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=20.54 E-value=4.5e+02 Score=21.29 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHHHHHHHHHHHHHHHHHH-HHHH
Q 022094 14 VLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSI-LGWI 92 (302)
Q Consensus 14 vl~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~ 92 (302)
++-+|++...|.. |.+|+.+.+.--++.+.+ +|.|+-+= +....+ ..-.++|.+.+..++++++.++ .||.
T Consensus 39 mvLLfllL~~~iv----~l~wv~~~a~~Ll~~m~l-lFVPa~Vg--Vm~y~~-~l~~~~~~Il~~~iiST~lv~~vtg~~ 110 (128)
T COG1380 39 MVLLFLLLALKIV----KLEWVERGATFLLRNMAL-LFVPAGVG--VMNYFD-LLAADGLPILVVIIISTLLVLLVTGWV 110 (128)
T ss_pred HHHHHHHHHhCCc----cHHHHHHHHHHHHHHHHH-HHhcchHH--HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 667777776666666665 67777532 222111 1222344455545555555444 5555
Q ss_pred HHHHhC
Q 022094 93 VVQFTR 98 (302)
Q Consensus 93 ~~~~~~ 98 (302)
.-+..|
T Consensus 111 ~~~l~~ 116 (128)
T COG1380 111 VQLLIR 116 (128)
T ss_pred HHHHHH
Confidence 555443
Done!