Query 022094
Match_columns 302
No_of_seqs 165 out of 683
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.7 0.0098 3.3E-07 54.8 10.6 107 16-127 174-281 (332)
2 2j5d_A BNIP3 TM, BCL2/adenovir 23.7 80 0.0027 19.8 3.1 23 31-61 8-30 (45)
3 3zux_A Transporter, ASBTNM; tr 11.1 7.8E+02 0.027 21.6 11.4 65 49-114 46-114 (332)
4 1vf5_F Protein PET M; photosyn 9.2 3.4E+02 0.011 16.0 4.1 26 147-172 6-31 (35)
5 2nwl_A GLTPH, glutamate sympor 7.9 1E+03 0.034 21.8 7.6 53 49-101 55-111 (422)
6 2jwa_A Receptor tyrosine-prote 7.9 4.4E+02 0.015 16.3 4.0 14 19-34 27-40 (44)
7 1v54_G Cytochrome C oxidase po 7.4 2.3E+02 0.0079 20.2 2.2 21 41-61 14-34 (85)
8 4ev6_A Magnesium transport pro 6.1 5.3E+02 0.018 22.6 4.5 19 47-65 285-304 (339)
9 1q90_G Cytochrome B6F complex 5.9 2.3E+02 0.0079 16.9 1.2 11 258-268 6-16 (37)
10 1q90_M Cytochrome B6F complex 5.8 5.5E+02 0.019 15.5 4.3 22 76-97 10-31 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.69 E-value=0.0098 Score=54.81 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhcccCCCChhHHhhhhHHHHHHHhhHHHHHHhhcccChhhhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 022094 16 KVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITFLVGSILGWIVV 94 (302)
Q Consensus 16 ~v~ll~~vG~~~~~~k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~ 94 (302)
.+++=+.+|.+++....++ .+...+.+..+. .+.+=..+...++.+ .+.+.+. +.+....++..++++.+||.++
T Consensus 174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s-~~~illiv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVS-VAAIVLIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHH-HHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH-HHHHHHHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888887211222 133333333222 111112222223322 3333322 2333335567788999999999
Q ss_pred HHhCCCCCCcceeeeeeccCCCCCchhHHHHhh
Q 022094 95 QFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (302)
Q Consensus 95 ~~~~~~~~~r~~~~~~~~f~N~~~lpl~l~~al 127 (302)
|++|.+++++....+.++.+|+ .+++++..+.
T Consensus 250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~ 281 (332)
T 3zux_A 250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH 281 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence 9999999888888888999999 5889888877
No 2
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=23.72 E-value=80 Score=19.83 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=15.3
Q ss_pred ccCCCChhHHhhhhHHHHHHHhhHHHHHHhh
Q 022094 31 HVNILGEDARKHINNLVFYVFNPALVASNLA 61 (302)
Q Consensus 31 k~~il~~~~~~~ls~lv~~v~lP~Lif~~l~ 61 (302)
|.|+++.+..| +++|.++.+++.
T Consensus 8 kggi~sa~flk--------~~~psll~shiL 30 (45)
T 2j5d_A 8 KGGIFSAEFLK--------VFLPSLLLSHLL 30 (45)
T ss_dssp CCSCSCHHHHH--------HHHHHHHHHHHH
T ss_pred cCCeeehHHHH--------HHhhHHHHHHHH
Confidence 55666666554 778888777664
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=11.13 E-value=7.8e+02 Score=21.57 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=36.6
Q ss_pred HHHhhHHHHHHhhcccChhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeeeeeccC
Q 022094 49 YVFNPALVASNLANTITYESMLKL----WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAG 114 (302)
Q Consensus 49 ~v~lP~Lif~~l~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~f~ 114 (302)
...+..++|..- -+++.+++.+. .......+..+++.-++++.+.+++..++.....++..+..+
T Consensus 46 ~~~l~~~mf~~G-~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P 114 (332)
T 3zux_A 46 PWLLGIIMFGMG-LTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCP 114 (332)
T ss_dssp HHHHHHHHHHHH-HHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCC
Confidence 345565555444 34566666532 333333345566677888988888877665544333333333
No 4
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=9.22 E-value=3.4e+02 Score=16.02 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHhhHHhhcCC
Q 022094 147 AYVSLSMAVGAIYLWSYVYNIVRASS 172 (302)
Q Consensus 147 ~Y~~i~~~~~~~~~wt~G~~ll~~~~ 172 (302)
+.++.-.+.-+++=|++|+.+++-.+
T Consensus 6 f~~A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 6 LYAALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeec
Confidence 44555556667888999999998654
No 5
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=7.90 E-value=1e+03 Score=21.81 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHhhHHHHHHhhcccC---hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022094 49 YVFNPALVASNLANTIT---YESMLKL-WFMPFNVLITFLVGSILGWIVVQFTRPPS 101 (302)
Q Consensus 49 ~v~lP~Lif~~l~~~~~---~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 101 (302)
+...|-|+|.++...+. .+++.++ .....+..++.+++..+|.++..+++...
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~ 111 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 111 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34556667777764332 3445444 45566677788888888999888887543
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.87 E-value=4.4e+02 Score=16.31 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhcccCC
Q 022094 19 LITALGSYLALDHVNI 34 (302)
Q Consensus 19 ll~~vG~~~~~~k~~i 34 (302)
+...+|+|++ |+++
T Consensus 27 ~~l~~~~~~R--RR~~ 40 (44)
T 2jwa_A 27 LGVVFGILIK--RRQQ 40 (44)
T ss_dssp HHHHHHHHHH--HHCS
T ss_pred HHHHHHhhee--hhhh
Confidence 3344466666 6543
No 7
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=7.42 E-value=2.3e+02 Score=20.22 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHhhHHHHHHhh
Q 022094 41 KHINNLVFYVFNPALVASNLA 61 (302)
Q Consensus 41 ~~ls~lv~~v~lP~Lif~~l~ 61 (302)
+.=-++.+.+++||+++..+.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n 34 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLN 34 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788887776654
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.14 E-value=5.3e+02 Score=22.62 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHhhc-ccC
Q 022094 47 VFYVFNPALVASNLAN-TIT 65 (302)
Q Consensus 47 v~~v~lP~Lif~~l~~-~~~ 65 (302)
+.-+|+|..+++++.+ ++.
T Consensus 285 it~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhhccCcCC
Confidence 3457889888888865 654
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.93 E-value=2.3e+02 Score=16.89 Aligned_cols=11 Identities=55% Similarity=1.253 Sum_probs=6.1
Q ss_pred HHHHHHhcchh
Q 022094 258 LAGFIIGLVPL 268 (302)
Q Consensus 258 ~~gliv~~vp~ 268 (302)
+.|+++|++|.
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 44566666653
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.81 E-value=5.5e+02 Score=15.47 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022094 76 PFNVLITFLVGSILGWIVVQFT 97 (302)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~ 97 (302)
....+..+++|..+|+++.|+-
T Consensus 10 A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 10 ALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4445566778888888888763
Done!