Query 022094
Match_columns 302
No_of_seqs 165 out of 683
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 13:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 25.2 16 0.0012 19.8 1.5 28 247-274 5-32 (34)
2 d2r6gf2 f.58.1.1 (F:261-504) M 15.7 2.2E+02 0.016 21.5 9.2 36 75-110 24-60 (244)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 12.4 99 0.0072 15.8 3.0 20 144-163 2-21 (30)
4 d1v54g_ f.23.2.1 (G:) Mitochon 10.4 70 0.0051 21.2 2.2 22 40-61 13-34 (84)
5 d1q90r_ f.23.12.1 (R:) ISP sub 7.7 87 0.0063 17.6 1.5 28 247-274 10-37 (39)
6 d1q90g_ f.23.26.1 (G:) PetG su 6.6 99 0.0072 16.0 1.2 11 258-268 6-16 (30)
7 d1jb0m_ f.23.19.1 (M:) Subunit 6.0 1.1E+02 0.0084 15.8 1.3 12 258-269 9-20 (31)
8 d1oedc_ f.36.1.1 (C:) Acetylch 5.4 1.6E+02 0.011 22.5 2.5 17 45-61 3-19 (260)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.2 2.9E+02 0.021 16.3 3.3 22 40-62 6-27 (64)
10 d1oede_ f.36.1.1 (E:) Acetylch 4.8 1.6E+02 0.012 22.5 2.3 16 46-61 4-19 (260)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.24 E-value=16 Score=19.77 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.0
Q ss_pred cccCCHHHHHHHHHHHHhcchhhhhhhc
Q 022094 247 KSMFAPSTIGALAGFIIGLVPLIRKSMI 274 (302)
Q Consensus 247 ~~~~nPp~ia~~~gliv~~vp~l~~~~~ 274 (302)
++|||=-..+.+-|+.+|..-|+-+.|.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5678888999999999998887766654
No 2
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=15.65 E-value=2.2e+02 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCCCcceeeee
Q 022094 75 MPFNVLITFLVGSILGWIVVQFTR-PPSHFRGLIVGC 110 (302)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~r~~~~~~ 110 (302)
....+++...++..+|+.++..+. .+.+.|+.+...
T Consensus 24 t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~ 60 (244)
T d2r6gf2 24 TVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVL 60 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 344455666666666666666543 333444443333
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.45 E-value=99 Score=15.76 Aligned_cols=20 Identities=15% Similarity=0.379 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHhHHHHHHH
Q 022094 144 YGLAYVSLSMAVGAIYLWSY 163 (302)
Q Consensus 144 ~g~~Y~~i~~~~~~~~~wt~ 163 (302)
+.+.|+++|.-.-.++++.+
T Consensus 2 e~i~yv~ifac~i~lfffai 21 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHH
Confidence 36788888877666666543
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.35 E-value=70 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=14.7
Q ss_pred HhhhhHHHHHHHhhHHHHHHhh
Q 022094 40 RKHINNLVFYVFNPALVASNLA 61 (302)
Q Consensus 40 ~~~ls~lv~~v~lP~Lif~~l~ 61 (302)
.+.--++.+.+++||+++..+.
T Consensus 13 ~~lWkkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 13 ARTWRFLTFGLALPSVALCTLN 34 (84)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334477778888888776553
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.70 E-value=87 Score=17.58 Aligned_cols=28 Identities=11% Similarity=-0.011 Sum_probs=20.7
Q ss_pred cccCCHHHHHHHHHHHHhcchhhhhhhc
Q 022094 247 KSMFAPSTIGALAGFIIGLVPLIRKSMI 274 (302)
Q Consensus 247 ~~~~nPp~ia~~~gliv~~vp~l~~~~~ 274 (302)
+++||=-+.+++-+...++.-|.-.+|.
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 5667777888888888888777665554
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.59 E-value=99 Score=16.01 Aligned_cols=11 Identities=55% Similarity=1.253 Sum_probs=7.4
Q ss_pred HHHHHHhcchh
Q 022094 258 LAGFIIGLVPL 268 (302)
Q Consensus 258 ~~gliv~~vp~ 268 (302)
+.|+++|++|.
T Consensus 6 l~GivlGlipi 16 (30)
T d1q90g_ 6 LCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHhhHHH
Confidence 45777777774
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.02 E-value=1.1e+02 Score=15.81 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=7.0
Q ss_pred HHHHHHhcchhh
Q 022094 258 LAGFIIGLVPLI 269 (302)
Q Consensus 258 ~~gliv~~vp~l 269 (302)
+++++++++|.+
T Consensus 9 ~valvial~pg~ 20 (31)
T d1jb0m_ 9 YVALVIALLPAV 20 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666666653
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.39 E-value=1.6e+02 Score=22.53 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHhhHHHHHHhh
Q 022094 45 NLVFYVFNPALVASNLA 61 (302)
Q Consensus 45 ~lv~~v~lP~Lif~~l~ 61 (302)
..++|+.+||.+++.+.
T Consensus 3 ~y~~n~~~P~~~~~~l~ 19 (260)
T d1oedc_ 3 FYVINFITPCVLISFLA 19 (260)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEEEhHHHHHHHHHHHH
Confidence 36789999999988875
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.24 E-value=2.9e+02 Score=16.33 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=14.4
Q ss_pred HhhhhHHHHHHHhhHHHHHHhhc
Q 022094 40 RKHINNLVFYVFNPALVASNLAN 62 (302)
Q Consensus 40 ~~~ls~lv~~v~lP~Lif~~l~~ 62 (302)
.+.|+- +.-+++|.-.++++..
T Consensus 6 mk~lT~-it~iflP~t~i~gifG 27 (64)
T d2iuba2 6 MKVLTI-IATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHH-HHHHHHHHHHHTTSCC
T ss_pred HHHHHH-HHHHHHHHHHHHhhhc
Confidence 344443 3458889888888864
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.81 E-value=1.6e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=13.8
Q ss_pred HHHHHHhhHHHHHHhh
Q 022094 46 LVFYVFNPALVASNLA 61 (302)
Q Consensus 46 lv~~v~lP~Lif~~l~ 61 (302)
.++++.+||.+++.+.
T Consensus 4 Y~~~lilP~~li~~ls 19 (260)
T d1oede_ 4 YIINIIAPCVLISSLV 19 (260)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Confidence 5789999999998875
Done!